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OnClass.data-00000-of-00001

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OnClass.npz

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accuracies.json

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 {
-    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| bladder urothelial cell | 2706 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.96 | 0.99 | 0.99 | 0.99 |\n| fibroblast | 1417 | 0.96 | 0.97 | 0.97 | 0.96 | 0.00 | 0.93 | 0.96 | 0.96 | 0.97 |\n| monocyte | 506 | 0.88 | 0.92 | 0.94 | 0.94 | 0.00 | 0.91 | 0.90 | 0.92 | 0.95 |\n| CD8-positive, alpha-beta T cell | 436 | 0.85 | 0.88 | 0.88 | 0.73 | 0.00 | 0.84 | 0.83 | 0.88 | 0.90 |\n| macrophage | 323 | 0.85 | 0.89 | 0.92 | 0.92 | 0.00 | 0.91 | 0.88 | 0.89 | 0.93 |\n| myofibroblast cell | 315 | 0.85 | 0.91 | 0.92 | 0.90 | 0.00 | 0.78 | 0.87 | 0.86 | 0.90 |\n| CD4-positive, alpha-beta T cell | 215 | 0.68 | 0.73 | 0.77 | 0.47 | 0.00 | 0.70 | 0.78 | 0.86 | 0.84 |\n| mast cell | 170 | 0.99 | 0.99 | 0.98 | 0.99 | 0.00 | 0.98 | 0.99 | 0.99 | 0.99 |\n| plasma cell | 108 | 0.94 | 0.96 | 0.97 | 0.98 | 0.00 | 0.96 | 0.97 | 0.97 | 0.97 |\n| pericyte | 112 | 0.95 | 0.96 | 0.95 | 0.95 | 0.00 | 0.94 | 0.92 | 0.94 | 0.95 |\n| smooth muscle cell | 96 | 0.96 | 0.95 | 0.95 | 0.96 | 0.00 | 0.94 | 0.95 | 0.91 | 0.95 |\n| T cell | 62 | 0.40 | 0.11 | 0.36 | 0.12 | 0.00 | 0.44 | 0.38 | 0.49 | 0.54 |\n| B cell | 44 | 0.93 | 0.96 | 0.97 | 0.96 | 0.00 | 0.92 | 0.94 | 0.91 | 0.96 |\n| vein endothelial cell | 38 | 0.75 | 0.83 | 0.81 | 0.80 | 0.00 | 0.88 | 0.89 | 0.89 | 0.86 |\n| neutrophil | 20 | 1.00 | 0.98 | 1.00 | 0.80 | 0.00 | 0.82 | 0.88 | 0.89 | 0.98 |\n| natural killer cell | 18 | 0.59 | 0.44 | 0.58 | 0.58 | 0.00 | 0.58 | 0.58 | 0.59 | 0.61 |\n| endothelial cell of lymphatic vessel | 14 | 0.90 | 0.92 | 0.96 | 0.52 | 0.00 | 0.93 | 0.96 | 0.97 | 0.96 |\n| capillary endothelial cell | 14 | 0.00 | 0.55 | 0.57 | 0.55 | 0.00 | 0.81 | 0.75 | 0.64 | 0.60 |\n| erythrocyte | 10 | 0.80 | 0.43 | 0.90 | 0.46 | 0.00 | 0.15 | 0.95 | 0.77 | 0.95 |\n| mature NK T cell | 7 | 0.67 | 0.60 | 0.47 | 0.20 | 0.00 | 0.60 | 0.62 | 0.56 | 0.71 |\n| endothelial cell | 4 | 0.00 | 0.00 | 0.33 | 0.50 | 0.00 | 0.44 | 0.40 | 0.40 | 0.67 |\n| regulatory T cell | 4 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.40 | 0.40 | 0.67 | 0.00 |",
-    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| bladder urothelial cell | 24535 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.96 | 0.99 | 0.99 | 0.99 |\n| fibroblast | 12349 | 0.96 | 0.96 | 0.98 | 0.97 | 0.00 | 0.93 | 0.96 | 0.96 | 0.97 |\n| monocyte | 4349 | 0.88 | 0.91 | 0.95 | 0.95 | 0.00 | 0.91 | 0.91 | 0.91 | 0.95 |\n| CD8-positive, alpha-beta T cell | 3996 | 0.86 | 0.88 | 0.92 | 0.81 | 0.00 | 0.88 | 0.88 | 0.92 | 0.92 |\n| macrophage | 2829 | 0.84 | 0.87 | 0.93 | 0.93 | 0.00 | 0.90 | 0.88 | 0.88 | 0.93 |\n| myofibroblast cell | 2821 | 0.86 | 0.91 | 0.94 | 0.93 | 0.00 | 0.80 | 0.89 | 0.89 | 0.92 |\n| CD4-positive, alpha-beta T cell | 1974 | 0.66 | 0.70 | 0.80 | 0.62 | 0.00 | 0.72 | 0.81 | 0.89 | 0.86 |\n| mast cell | 1398 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.97 | 0.99 | 0.97 | 0.99 |\n| plasma cell | 1097 | 0.96 | 0.96 | 0.98 | 0.99 | 0.00 | 0.97 | 0.99 | 0.98 | 0.99 |\n| pericyte | 1072 | 0.96 | 0.96 | 0.97 | 0.96 | 0.00 | 0.95 | 0.96 | 0.97 | 0.97 |\n| smooth muscle cell | 957 | 0.95 | 0.96 | 0.98 | 0.97 | 0.00 | 0.95 | 0.96 | 0.95 | 0.97 |\n| T cell | 719 | 0.45 | 0.03 | 0.59 | 0.40 | 0.00 | 0.58 | 0.62 | 0.70 | 0.74 |\n| B cell | 440 | 0.94 | 0.95 | 0.95 | 0.96 | 0.00 | 0.94 | 0.96 | 0.98 | 0.97 |\n| vein endothelial cell | 400 | 0.82 | 0.86 | 0.91 | 0.84 | 0.00 | 0.94 | 0.96 | 0.97 | 0.94 |\n| neutrophil | 221 | 0.95 | 0.96 | 0.97 | 0.88 | 0.00 | 0.86 | 0.94 | 0.87 | 0.96 |\n| natural killer cell | 147 | 0.59 | 0.30 | 0.74 | 0.58 | 0.00 | 0.68 | 0.75 | 0.77 | 0.79 |\n| endothelial cell of lymphatic vessel | 113 | 0.89 | 0.88 | 0.92 | 0.65 | 0.00 | 0.96 | 0.99 | 0.99 | 0.96 |\n| capillary endothelial cell | 93 | 0.00 | 0.47 | 0.71 | 0.63 | 0.00 | 0.84 | 0.98 | 0.99 | 0.91 |\n| erythrocyte | 96 | 0.83 | 0.34 | 0.97 | 0.87 | 0.00 | 0.15 | 0.96 | 0.80 | 0.98 |\n| mature NK T cell | 88 | 0.54 | 0.32 | 0.72 | 0.34 | 0.00 | 0.77 | 0.91 | 0.93 | 0.92 |\n| endothelial cell | 33 | 0.00 | 0.00 | 0.34 | 0.52 | 0.00 | 0.67 | 0.97 | 0.99 | 0.86 |\n| regulatory T cell | 19 | 0.00 | 0.00 | 0.10 | 0.00 | 0.00 | 0.75 | 0.86 | 0.78 | 0.69 |"
+    "query_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| bladder urothelial cell | 2777 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.95 | 0.99 | 0.99 | 0.99 |\n| fibroblast | 1364 | 0.96 | 0.97 | 0.98 | 0.96 | 0.00 | 0.95 | 0.95 | 0.95 | 0.97 |\n| monocyte | 456 | 0.88 | 0.91 | 0.91 | 0.91 | 0.00 | 0.91 | 0.90 | 0.90 | 0.93 |\n| CD8-positive, alpha-beta T cell | 409 | 0.86 | 0.88 | 0.88 | 0.76 | 0.00 | 0.86 | 0.88 | 0.90 | 0.91 |\n| macrophage | 329 | 0.86 | 0.89 | 0.91 | 0.90 | 0.00 | 0.90 | 0.88 | 0.88 | 0.91 |\n| myofibroblast cell | 302 | 0.87 | 0.92 | 0.94 | 0.91 | 0.00 | 0.87 | 0.88 | 0.86 | 0.92 |\n| CD4-positive, alpha-beta T cell | 237 | 0.71 | 0.75 | 0.74 | 0.55 | 0.00 | 0.68 | 0.79 | 0.86 | 0.83 |\n| mast cell | 159 | 0.98 | 0.98 | 0.98 | 0.99 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| plasma cell | 133 | 0.95 | 0.96 | 0.98 | 0.99 | 0.00 | 0.97 | 0.99 | 0.97 | 0.99 |\n| pericyte | 108 | 0.95 | 0.95 | 0.94 | 0.96 | 0.00 | 0.95 | 0.95 | 0.91 | 0.96 |\n| smooth muscle cell | 109 | 0.93 | 0.97 | 0.97 | 0.96 | 0.00 | 0.94 | 0.96 | 0.94 | 0.96 |\n| T cell | 73 | 0.48 | 0.14 | 0.46 | 0.13 | 0.00 | 0.42 | 0.53 | 0.59 | 0.60 |\n| B cell | 51 | 0.99 | 0.99 | 0.94 | 0.99 | 0.00 | 0.94 | 0.91 | 0.94 | 0.98 |\n| vein endothelial cell | 41 | 0.80 | 0.86 | 0.87 | 0.77 | 0.00 | 0.92 | 0.87 | 0.89 | 0.89 |\n| neutrophil | 26 | 0.88 | 0.98 | 0.96 | 0.77 | 0.00 | 0.81 | 0.93 | 0.87 | 0.93 |\n| natural killer cell | 13 | 0.57 | 0.33 | 0.57 | 0.10 | 0.00 | 0.46 | 0.59 | 0.63 | 0.72 |\n| endothelial cell of lymphatic vessel | 13 | 0.89 | 0.92 | 0.92 | 0.50 | 0.00 | 0.80 | 0.92 | 0.89 | 0.92 |\n| capillary endothelial cell | 8 | 0.00 | 0.46 | 0.67 | 0.50 | 0.00 | 0.60 | 0.82 | 0.94 | 0.86 |\n| erythrocyte | 9 | 0.89 | 0.35 | 1.00 | 0.36 | 0.00 | 0.08 | 0.95 | 0.72 | 1.00 |\n| mature NK T cell | 13 | 0.67 | 0.38 | 0.70 | 0.25 | 0.00 | 0.56 | 0.69 | 0.80 | 0.88 |\n| endothelial cell | 4 | 0.00 | 0.00 | 0.00 | 0.67 | 0.00 | 0.50 | 0.29 | 0.00 | 0.40 |\n| regulatory T cell | 5 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
+    "ref_accuracy": "| Cell Type | N cells |  celltypist |  knn bbknn |  knn harmony |  knn on scvi |  onclass |  scanvi |  svm |  xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| bladder urothelial cell | 24464 | 0.99 | 0.99 | 0.99 | 0.99 | 0.00 | 0.95 | 0.99 | 0.99 | 0.99 |\n| fibroblast | 12402 | 0.95 | 0.96 | 0.98 | 0.97 | 0.00 | 0.95 | 0.96 | 0.95 | 0.97 |\n| monocyte | 4399 | 0.89 | 0.91 | 0.95 | 0.95 | 0.00 | 0.91 | 0.91 | 0.92 | 0.95 |\n| CD8-positive, alpha-beta T cell | 4023 | 0.86 | 0.88 | 0.92 | 0.85 | 0.00 | 0.86 | 0.89 | 0.92 | 0.92 |\n| macrophage | 2823 | 0.84 | 0.87 | 0.93 | 0.92 | 0.00 | 0.88 | 0.88 | 0.89 | 0.92 |\n| myofibroblast cell | 2834 | 0.86 | 0.90 | 0.94 | 0.93 | 0.00 | 0.87 | 0.89 | 0.87 | 0.92 |\n| CD4-positive, alpha-beta T cell | 1952 | 0.70 | 0.72 | 0.80 | 0.67 | 0.00 | 0.73 | 0.82 | 0.89 | 0.85 |\n| mast cell | 1409 | 0.98 | 0.99 | 0.99 | 0.99 | 0.00 | 0.99 | 0.99 | 0.97 | 0.99 |\n| plasma cell | 1072 | 0.95 | 0.96 | 0.98 | 0.99 | 0.00 | 0.98 | 0.99 | 0.98 | 0.99 |\n| pericyte | 1076 | 0.96 | 0.96 | 0.97 | 0.97 | 0.00 | 0.95 | 0.97 | 0.97 | 0.98 |\n| smooth muscle cell | 944 | 0.94 | 0.96 | 0.98 | 0.97 | 0.00 | 0.94 | 0.97 | 0.95 | 0.97 |\n| T cell | 708 | 0.45 | 0.08 | 0.58 | 0.30 | 0.00 | 0.52 | 0.64 | 0.70 | 0.72 |\n| B cell | 433 | 0.94 | 0.94 | 0.95 | 0.95 | 0.00 | 0.92 | 0.95 | 0.97 | 0.97 |\n| vein endothelial cell | 397 | 0.81 | 0.87 | 0.91 | 0.86 | 0.00 | 0.95 | 0.97 | 0.98 | 0.95 |\n| neutrophil | 215 | 0.88 | 0.97 | 0.97 | 0.84 | 0.00 | 0.80 | 0.98 | 0.89 | 0.94 |\n| natural killer cell | 152 | 0.60 | 0.21 | 0.71 | 0.45 | 0.00 | 0.62 | 0.77 | 0.75 | 0.80 |\n| endothelial cell of lymphatic vessel | 114 | 0.89 | 0.90 | 0.91 | 0.58 | 0.00 | 0.95 | 0.97 | 0.99 | 0.98 |\n| capillary endothelial cell | 99 | 0.00 | 0.50 | 0.74 | 0.64 | 0.00 | 0.80 | 0.95 | 0.99 | 0.93 |\n| erythrocyte | 97 | 0.87 | 0.33 | 0.97 | 0.80 | 0.00 | 0.09 | 0.92 | 0.77 | 0.93 |\n| mature NK T cell | 82 | 0.52 | 0.32 | 0.70 | 0.33 | 0.00 | 0.61 | 0.85 | 0.86 | 0.88 |\n| endothelial cell | 33 | 0.00 | 0.00 | 0.36 | 0.51 | 0.00 | 0.80 | 0.97 | 0.97 | 0.92 |\n| regulatory T cell | 18 | 0.00 | 0.00 | 0.11 | 0.00 | 0.00 | 0.72 | 0.90 | 0.92 | 0.43 |"
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