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{
"query_accuracy": "| Cell Type | N cells | celltypist | knn on bbknn | knn on harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| basal cell | 1021 | 0.99 | 0.98 | 0.98 | 0.99 | 0.00 | 0.89 | 0.98 | 0.97 | 0.99 |\n| neutrophil | 461 | 0.99 | 0.99 | 0.98 | 0.99 | 0.00 | 0.92 | 0.99 | 0.99 | 0.99 |\n| fibroblast | 169 | 0.96 | 0.95 | 0.97 | 0.96 | 0.00 | 0.95 | 0.97 | 0.96 | 0.97 |\n| CD8-positive, alpha-beta T cell | 126 | 0.90 | 0.93 | 0.92 | 0.87 | 0.00 | 0.95 | 0.92 | 0.95 | 0.94 |\n| ciliated columnar cell of tracheobronchial tree | 69 | 0.97 | 0.97 | 0.95 | 0.98 | 0.00 | 0.82 | 0.96 | 0.96 | 0.96 |\n| macrophage | 73 | 0.95 | 0.97 | 0.97 | 0.95 | 0.00 | 0.92 | 0.97 | 0.97 | 0.98 |\n| B cell | 66 | 0.96 | 0.97 | 0.99 | 0.97 | 0.00 | 0.98 | 0.98 | 0.98 | 0.98 |\n| endothelial cell | 54 | 0.96 | 0.95 | 0.96 | 0.97 | 0.00 | 0.95 | 0.97 | 0.97 | 0.97 |\n| serous cell of epithelium of trachea | 24 | 0.62 | 0.15 | 0.71 | 0.72 | 0.00 | 0.28 | 0.48 | 0.48 | 0.74 |\n| plasma cell | 28 | 0.95 | 0.95 | 0.95 | 0.96 | 0.00 | 0.95 | 0.95 | 0.95 | 0.95 |\n| CD4-positive, alpha-beta T cell | 33 | 0.78 | 0.78 | 0.78 | 0.69 | 0.00 | 0.82 | 0.82 | 0.93 | 0.89 |\n| mucus secreting cell | 34 | 0.85 | 0.83 | 0.87 | 0.85 | 0.00 | 0.78 | 0.77 | 0.78 | 0.86 |\n| tracheal goblet cell | 34 | 0.87 | 0.70 | 0.91 | 0.88 | 0.00 | 0.70 | 0.90 | 0.88 | 0.91 |\n| connective tissue cell | 10 | 0.86 | 0.00 | 0.95 | 0.46 | 0.00 | 0.87 | 0.91 | 0.82 | 0.95 |\n| smooth muscle cell | 17 | 0.78 | 0.80 | 0.86 | 0.91 | 0.00 | 0.60 | 0.82 | 0.82 | 0.82 |\n| mast cell | 17 | 0.94 | 0.94 | 0.97 | 0.97 | 0.00 | 0.94 | 0.94 | 0.97 | 0.94 |\n| monocyte | 6 | 0.77 | 0.91 | 0.91 | 0.67 | 0.00 | 0.71 | 1.00 | 0.83 | 0.91 |\n| natural killer cell | 9 | 0.62 | 0.78 | 0.80 | 0.00 | 0.00 | 0.76 | 0.74 | 0.80 | 0.70 |\n| granulocyte | 5 | 0.00 | 0.00 | 0.33 | 0.00 | 0.00 | 0.12 | 0.47 | 0.36 | 0.33 |\n| mature NK T cell | 5 | 0.22 | 0.00 | 0.50 | 0.00 | 0.00 | 0.50 | 0.67 | 0.80 | 0.44 |\n| T cell | 2 | 0.00 | 0.00 | 0.67 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| ionocyte | 1 | 0.67 | 0.00 | 0.67 | 0.67 | 0.00 | 0.07 | 0.67 | 1.00 | 0.67 |\n| regulatory T cell | 3 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 | 0.00 |\n| intermediate monocyte | 1 | 0.00 | 0.00 | 0.67 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| non-classical monocyte | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| innate lymphoid cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| plasmacytoid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |\n| myeloid dendritic cell | 0 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 |",
"ref_accuracy": "| Cell Type | N cells | celltypist | knn on bbknn | knn on harmony | knn on scvi | onclass | scanvi | svm | xgboost | Consensus Prediction |\n| --- | --- | --- | --- | --- | --- | --- | --- | --- | --- | --- |\n| basal cell | 9226 | 0.99 | 0.98 | 0.99 | 0.99 | 0.00 | 0.91 | 0.98 | 0.97 | 0.99 |\n| neutrophil | 4223 | 0.99 | 0.99 | 0.98 | 0.99 | 0.00 | 0.95 | 0.99 | 0.99 | 1.00 |\n| fibroblast | 1631 | 0.97 | 0.93 | 0.98 | 0.98 | 0.00 | 0.96 | 0.98 | 0.98 | 0.99 |\n| CD8-positive, alpha-beta T cell | 1076 | 0.88 | 0.91 | 0.94 | 0.90 | 0.00 | 0.95 | 0.98 | 0.99 | 0.96 |\n| ciliated columnar cell of tracheobronchial tree | 644 | 0.97 | 0.97 | 0.97 | 0.98 | 0.00 | 0.87 | 0.99 | 0.97 | 0.99 |\n| macrophage | 639 | 0.92 | 0.93 | 0.94 | 0.93 | 0.00 | 0.94 | 0.98 | 0.99 | 0.97 |\n| B cell | 561 | 0.96 | 0.96 | 0.97 | 0.97 | 0.00 | 0.98 | 1.00 | 0.99 | 0.99 |\n| endothelial cell | 532 | 0.98 | 0.98 | 0.98 | 0.99 | 0.00 | 0.96 | 0.99 | 0.99 | 0.99 |\n| serous cell of epithelium of trachea | 302 | 0.79 | 0.01 | 0.87 | 0.83 | 0.00 | 0.51 | 0.79 | 0.70 | 0.93 |\n| plasma cell | 264 | 0.97 | 0.97 | 0.99 | 0.98 | 0.00 | 0.99 | 1.00 | 0.99 | 1.00 |\n| CD4-positive, alpha-beta T cell | 245 | 0.64 | 0.64 | 0.78 | 0.66 | 0.00 | 0.88 | 0.95 | 0.97 | 0.86 |\n| mucus secreting cell | 236 | 0.77 | 0.67 | 0.86 | 0.85 | 0.00 | 0.78 | 0.85 | 0.82 | 0.91 |\n| tracheal goblet cell | 198 | 0.81 | 0.51 | 0.90 | 0.91 | 0.00 | 0.60 | 0.91 | 0.86 | 0.96 |\n| connective tissue cell | 142 | 0.80 | 0.00 | 0.91 | 0.95 | 0.00 | 0.90 | 0.93 | 0.90 | 0.98 |\n| smooth muscle cell | 114 | 0.78 | 0.81 | 0.88 | 0.91 | 0.00 | 0.57 | 0.91 | 0.91 | 0.88 |\n| mast cell | 102 | 0.97 | 0.97 | 0.97 | 0.99 | 0.00 | 0.96 | 1.00 | 1.00 | 1.00 |\n| monocyte | 75 | 0.60 | 0.62 | 0.74 | 0.58 | 0.00 | 0.79 | 0.95 | 0.97 | 0.88 |\n| natural killer cell | 55 | 0.63 | 0.60 | 0.72 | 0.35 | 0.00 | 0.79 | 0.92 | 0.90 | 0.93 |\n| granulocyte | 34 | 0.00 | 0.00 | 0.20 | 0.16 | 0.00 | 0.14 | 0.60 | 0.63 | 0.29 |\n| mature NK T cell | 32 | 0.28 | 0.06 | 0.69 | 0.44 | 0.00 | 0.65 | 0.93 | 0.98 | 0.92 |\n| T cell | 17 | 0.00 | 0.00 | 0.64 | 0.29 | 0.00 | 0.67 | 1.00 | 1.00 | 0.94 |\n| ionocyte | 17 | 0.78 | 0.00 | 0.88 | 0.94 | 0.00 | 0.13 | 1.00 | 1.00 | 0.94 |\n| regulatory T cell | 14 | 0.00 | 0.00 | 0.24 | 0.00 | 0.00 | 0.84 | 1.00 | 1.00 | 0.60 |\n| intermediate monocyte | 15 | 0.00 | 0.00 | 0.42 | 0.38 | 0.00 | 0.81 | 0.94 | 1.00 | 0.85 |\n| non-classical monocyte | 5 | 0.00 | 0.00 | 0.33 | 0.57 | 0.00 | 0.67 | 0.91 | 1.00 | 0.75 |\n| innate lymphoid cell | 2 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.50 | 1.00 | 0.80 | 1.00 |\n| plasmacytoid dendritic cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 0.67 | 1.00 | 1.00 | 1.00 |\n| myeloid dendritic cell | 1 | 0.00 | 0.00 | 0.00 | 0.00 | 0.00 | 1.00 | 1.00 | 1.00 | 1.00 |"
} |