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scvi-tools
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tabula-sapiens-eye-scvi

TensorBoard
scvi-tools
biology
genomics
single-cell
model_cls_name:SCVI
scvi_version:1.2.0
anndata_version:0.11.1
modality:rna
tissue:various
annotated:True
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@@ -51,10 +51,10 @@ space might still be useful for analysis.
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  | Metric | Training Value | Validation Value |
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  |-------------------------|----------------|------------------|
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- | Mean Absolute Error | 1.97 | 2.19 |
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  | Pearson Correlation | 0.82 | 0.78 |
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  | Spearman Correlation | 0.81 | 0.79 |
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- | R² (R-Squared) | 0.59 | 0.46 |
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  The gene-wise coefficient of variation summarizes how well variation between different genes is
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  preserved by the generated model expression. This value is usually quite high.
@@ -63,10 +63,10 @@ preserved by the generated model expression. This value is usually quite high.
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  | Metric | Training Value |
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  |-------------------------|----------------|
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- | Mean Absolute Error | 13.33 |
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  | Pearson Correlation | 0.59 |
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- | Spearman Correlation | 0.60 |
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- | R² (R-Squared) | -0.39 |
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  </details>
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@@ -83,33 +83,33 @@ cell-type.
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  | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
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  | --- | --- | --- | --- | --- | --- | --- | --- |
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- | conjunctival epithelial cell | 0.98 | 0.88 | 0.77 | 0.96 | 0.25 | 0.91 | 4587.00 |
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- | corneal epithelial cell | 0.93 | 1.32 | 0.76 | 0.95 | 0.39 | 0.91 | 1488.00 |
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- | eye photoreceptor cell | 0.94 | 2.09 | 0.74 | 0.90 | 0.32 | 0.86 | 891.00 |
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- | keratocyte | 0.93 | 1.83 | 0.72 | 0.88 | 0.41 | 0.83 | 595.00 |
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- | retinal blood vessel endothelial cell | 0.90 | 2.79 | 0.60 | 0.88 | 0.41 | 0.84 | 466.00 |
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- | Mueller cell | 0.86 | 2.77 | 0.68 | 0.85 | 0.40 | 0.82 | 360.00 |
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- | stromal cell | 0.84 | 1.05 | 0.74 | 0.92 | 0.38 | 0.75 | 325.00 |
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- | T cell | 0.78 | 4.66 | 0.54 | 0.68 | 0.21 | 0.73 | 237.00 |
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- | microglial cell | 0.87 | 3.46 | 0.59 | 0.77 | 0.31 | 0.73 | 209.00 |
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- | radial glial cell | 0.86 | 2.11 | 0.71 | 0.85 | 0.47 | 0.81 | 195.00 |
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- | dendritic cell | 0.87 | 4.56 | 0.58 | 0.67 | 0.24 | 0.70 | 182.00 |
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- | melanocyte | 0.82 | 3.28 | 0.65 | 0.76 | 0.35 | 0.72 | 144.00 |
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- | stem cell | 0.82 | 2.80 | 0.66 | 0.73 | 0.37 | 0.63 | 144.00 |
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- | macrophage | 0.82 | 3.45 | 0.65 | 0.76 | 0.36 | 0.73 | 108.00 |
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- | endothelial cell | 0.81 | 3.65 | 0.66 | 0.76 | 0.36 | 0.71 | 105.00 |
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- | B cell | 0.84 | 5.53 | 0.55 | 0.62 | 0.26 | 0.72 | 102.00 |
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- | fibroblast | 0.76 | 3.36 | 0.68 | 0.74 | 0.35 | 0.65 | 95.00 |
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- | surface ectodermal cell | 0.66 | 4.59 | 0.61 | 0.62 | 0.38 | 0.69 | 54.00 |
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- | epithelial cell of lacrimal sac | 0.68 | 5.19 | 0.53 | 0.48 | 0.40 | 0.67 | 52.00 |
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- | retinal pigment epithelial cell | 0.86 | 5.64 | 0.57 | 0.62 | 0.34 | 0.75 | 49.00 |
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- | plasma cell | 0.59 | 5.37 | 0.54 | 0.50 | 0.29 | 0.79 | 46.00 |
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- | monocyte | 0.69 | 5.03 | 0.58 | 0.59 | 0.33 | 0.68 | 44.00 |
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- | fat cell | 0.82 | 3.73 | 0.66 | 0.76 | 0.34 | 0.68 | 44.00 |
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- | retinal bipolar neuron | 0.68 | 4.76 | 0.60 | 0.64 | 0.39 | 0.70 | 34.00 |
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- | erythroid lineage cell | 0.33 | 7.35 | 0.23 | 0.24 | 0.23 | 0.93 | 30.00 |
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- | CD4-positive, alpha-beta T cell | 0.40 | 6.72 | 0.44 | 0.35 | 0.31 | 0.54 | 23.00 |
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- | pigmented ciliary epithelial cell | 0.59 | 5.24 | 0.58 | 0.53 | 0.34 | 0.63 | 17.00 |
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  </details>
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  | Metric | Training Value | Validation Value |
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  |-------------------------|----------------|------------------|
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+ | Mean Absolute Error | 1.97 | 2.17 |
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  | Pearson Correlation | 0.82 | 0.78 |
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  | Spearman Correlation | 0.81 | 0.79 |
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+ | R² (R-Squared) | 0.60 | 0.49 |
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  The gene-wise coefficient of variation summarizes how well variation between different genes is
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  preserved by the generated model expression. This value is usually quite high.
 
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  | Metric | Training Value |
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  |-------------------------|----------------|
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+ | Mean Absolute Error | 13.52 |
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  | Pearson Correlation | 0.59 |
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+ | Spearman Correlation | 0.62 |
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+ | R² (R-Squared) | -0.40 |
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  </details>
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  | Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |
85
  | --- | --- | --- | --- | --- | --- | --- | --- |
86
+ | conjunctival epithelial cell | 0.98 | 0.79 | 0.81 | 0.96 | 0.25 | 0.91 | 4587.00 |
87
+ | corneal epithelial cell | 0.94 | 1.28 | 0.78 | 0.95 | 0.39 | 0.91 | 1488.00 |
88
+ | eye photoreceptor cell | 0.95 | 2.13 | 0.74 | 0.89 | 0.33 | 0.86 | 891.00 |
89
+ | keratocyte | 0.93 | 1.79 | 0.73 | 0.89 | 0.41 | 0.83 | 595.00 |
90
+ | retinal blood vessel endothelial cell | 0.89 | 2.69 | 0.62 | 0.88 | 0.42 | 0.84 | 466.00 |
91
+ | Mueller cell | 0.87 | 2.95 | 0.64 | 0.83 | 0.40 | 0.82 | 360.00 |
92
+ | stromal cell | 0.84 | 1.00 | 0.76 | 0.92 | 0.38 | 0.75 | 325.00 |
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+ | T cell | 0.80 | 4.62 | 0.54 | 0.69 | 0.20 | 0.73 | 237.00 |
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+ | microglial cell | 0.88 | 3.22 | 0.63 | 0.80 | 0.30 | 0.73 | 209.00 |
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+ | radial glial cell | 0.82 | 2.05 | 0.72 | 0.86 | 0.47 | 0.81 | 195.00 |
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+ | dendritic cell | 0.82 | 4.39 | 0.61 | 0.69 | 0.23 | 0.70 | 182.00 |
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+ | melanocyte | 0.80 | 3.31 | 0.65 | 0.76 | 0.35 | 0.72 | 144.00 |
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+ | stem cell | 0.79 | 2.80 | 0.66 | 0.73 | 0.36 | 0.63 | 144.00 |
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+ | macrophage | 0.83 | 3.46 | 0.65 | 0.76 | 0.36 | 0.73 | 108.00 |
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+ | endothelial cell | 0.80 | 3.84 | 0.64 | 0.76 | 0.36 | 0.71 | 105.00 |
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+ | B cell | 0.87 | 5.48 | 0.56 | 0.62 | 0.26 | 0.71 | 102.00 |
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+ | fibroblast | 0.77 | 3.62 | 0.65 | 0.72 | 0.36 | 0.66 | 95.00 |
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+ | surface ectodermal cell | 0.67 | 4.70 | 0.60 | 0.61 | 0.38 | 0.69 | 54.00 |
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+ | epithelial cell of lacrimal sac | 0.72 | 5.00 | 0.55 | 0.48 | 0.40 | 0.67 | 52.00 |
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+ | retinal pigment epithelial cell | 0.86 | 5.43 | 0.59 | 0.63 | 0.34 | 0.75 | 49.00 |
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+ | plasma cell | 0.56 | 5.35 | 0.55 | 0.50 | 0.30 | 0.80 | 46.00 |
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+ | monocyte | 0.72 | 5.33 | 0.56 | 0.57 | 0.34 | 0.68 | 44.00 |
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+ | fat cell | 0.78 | 3.93 | 0.63 | 0.73 | 0.36 | 0.69 | 44.00 |
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+ | retinal bipolar neuron | 0.69 | 4.88 | 0.59 | 0.65 | 0.38 | 0.69 | 34.00 |
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+ | erythroid lineage cell | 0.36 | 6.74 | 0.28 | 0.30 | 0.24 | 0.93 | 30.00 |
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+ | CD4-positive, alpha-beta T cell | 0.44 | 6.37 | 0.47 | 0.38 | 0.30 | 0.53 | 23.00 |
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+ | pigmented ciliary epithelial cell | 0.57 | 5.22 | 0.58 | 0.53 | 0.35 | 0.63 | 17.00 |
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  </details>
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