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scvi-tools
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tabula-sapiens-tongue-scanvi

TensorBoard
scvi-tools
biology
genomics
single-cell
model_cls_name:SCANVI
scvi_version:1.2.0
anndata_version:0.11.1
modality:rna
tissue:various
annotated:True
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  1. adata.h5ad +2 -2
  2. lightning_logs/version_0/events.out.tfevents.1733431783.Yoseflab-R13B.329818.10 +3 -0
  3. lightning_logs/version_0/events.out.tfevents.1733432762.Yoseflab-R13B.329818.14 +3 -0
  4. lightning_logs/version_0/events.out.tfevents.1733433016.Yoseflab-R13B.329818.18 +3 -0
  5. lightning_logs/version_0/events.out.tfevents.1733433448.Yoseflab-R13B.329818.22 +3 -0
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  16. lightning_logs/version_0/events.out.tfevents.1733439390.Yoseflab-R13B.337477.42 +3 -0
  17. lightning_logs/version_0/events.out.tfevents.1733439563.Yoseflab-R13B.337477.46 +3 -0
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  21. lightning_logs/version_0/events.out.tfevents.1733449425.Yoseflab-R13B.365372.66 +3 -0
  22. lightning_logs/version_0/hparams.yaml +1 -0
  23. lightning_logs/version_1/events.out.tfevents.1733434519.Yoseflab-R13B.337477.2 +3 -0
  24. lightning_logs/version_1/events.out.tfevents.1733441063.Yoseflab-R13B.365372.0 +3 -0
  25. lightning_logs/version_1/events.out.tfevents.1733441332.Yoseflab-R13B.365372.3 +3 -0
  26. lightning_logs/version_1/events.out.tfevents.1733441529.Yoseflab-R13B.365372.6 +3 -0
  27. lightning_logs/version_1/events.out.tfevents.1733441832.Yoseflab-R13B.365372.9 +3 -0
  28. lightning_logs/version_1/events.out.tfevents.1733442653.Yoseflab-R13B.365372.15 +3 -0
  29. lightning_logs/version_1/events.out.tfevents.1733443246.Yoseflab-R13B.365372.18 +3 -0
  30. lightning_logs/version_1/events.out.tfevents.1733443654.Yoseflab-R13B.365372.21 +3 -0
  31. lightning_logs/version_1/events.out.tfevents.1733444348.Yoseflab-R13B.365372.24 +3 -0
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  33. lightning_logs/version_1/events.out.tfevents.1733444824.Yoseflab-R13B.365372.30 +3 -0
  34. lightning_logs/version_1/events.out.tfevents.1733445106.Yoseflab-R13B.365372.33 +3 -0
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  42. lightning_logs/version_2/hparams.yaml +1 -0
  43. metrics.json +5 -0
  44. model.pt +2 -2
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+ "cell_wise_cv": "| Metric | Training Value | Validation Value |\n|-------------------------|----------------|------------------|\n| Mean Absolute Error | 1.08 | 1.10 |\n| Pearson Correlation | 0.89 | 0.89 |\n| Spearman Correlation | 0.87 | 0.87 |\n| R\u00b2 (R-Squared) | 0.77 | 0.76 |",
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+ "gene_wise_cv": "| Metric | Training Value |\n|-------------------------|----------------|\n| Mean Absolute Error | 16.27 |\n| Pearson Correlation | 0.63 |\n| Spearman Correlation | 0.68 |\n| R\u00b2 (R-Squared) | -1.28 |",
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+ "diff_exp": "| Index | gene_f1 | lfc_mae | lfc_pearson | lfc_spearman | roc_auc | pr_auc | n_cells |\n| --- | --- | --- | --- | --- | --- | --- | --- |\n| basal cell | 0.90 | 0.33 | 0.86 | 0.97 | 0.42 | 0.89 | 6281.00 |\n| keratinocyte | 0.87 | 0.85 | 0.73 | 0.97 | 0.23 | 0.90 | 3667.00 |\n| epithelial cell | 0.87 | 0.51 | 0.76 | 0.93 | 0.53 | 0.87 | 2114.00 |\n| leukocyte | 0.85 | 0.75 | 0.73 | 0.94 | 0.38 | 0.87 | 2109.00 |\n| fibroblast | 0.78 | 2.43 | 0.63 | 0.83 | 0.44 | 0.80 | 251.00 |\n| vein endothelial cell | 0.79 | 2.94 | 0.61 | 0.81 | 0.46 | 0.81 | 226.00 |\n| pericyte | 0.75 | 3.36 | 0.63 | 0.75 | 0.40 | 0.72 | 117.00 |\n| capillary endothelial cell | 0.78 | 3.76 | 0.65 | 0.76 | 0.43 | 0.74 | 101.00 |\n| tongue muscle cell | 0.73 | 5.22 | 0.57 | 0.59 | 0.37 | 0.70 | 60.00 |\n| endothelial cell of lymphatic vessel | 0.61 | 5.36 | 0.55 | 0.54 | 0.44 | 0.71 | 44.00 |\n| endothelial cell of artery | 0.67 | 4.92 | 0.61 | 0.65 | 0.40 | 0.71 | 40.00 |"
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