Eitan177 commited on
Commit
4b9653e
·
1 Parent(s): 2319b33

Update app.py

Browse files
Files changed (1) hide show
  1. app.py +4 -3
app.py CHANGED
@@ -59,7 +59,7 @@ with st.form('get signature'):
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  refdownload=False
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  file_to_lookat=st.file_uploader('VCF upload here',type=[".vcf"],accept_multiple_files=True)
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  remove_old_vcf()
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- dl(file_to_lookat)
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  sub=st.form_submit_button('submit input')
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  if sub and file_to_lookat !=[]:
@@ -101,8 +101,9 @@ if sub and file_to_lookat !=[]:
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  sig.sigProfilerExtractor("vcf", "output", "input", minimum_signatures=1, maximum_signatures=3,nmf_test_conv= 1000,nmf_tolerance= 1e-10,max_nmf_iterations=100000,min_nmf_iterations= 1000)
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  #show_pdf('output/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/SBS96_Decomposition_Plots.pdf')
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-
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-
 
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  components.iframe("https://cancer.sanger.ac.uk/signatures/sbs/", height=3000,width=800)
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  #show_pdf('output/ID83/Suggested_Solution/COSMIC_ID83_Decomposed_Solution/ID83_Decomposition_Plots.pdf')
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  components.iframe("https://cancer.sanger.ac.uk/signatures/id/",height=3000,width=800)
 
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  refdownload=False
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  file_to_lookat=st.file_uploader('VCF upload here',type=[".vcf"],accept_multiple_files=True)
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  remove_old_vcf()
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+
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  sub=st.form_submit_button('submit input')
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  if sub and file_to_lookat !=[]:
 
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  sig.sigProfilerExtractor("vcf", "output", "input", minimum_signatures=1, maximum_signatures=3,nmf_test_conv= 1000,nmf_tolerance= 1e-10,max_nmf_iterations=100000,min_nmf_iterations= 1000)
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  #show_pdf('output/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/SBS96_Decomposition_Plots.pdf')
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+ with st.form('signatures'):
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+ dl(file_to_lookat)
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+ sig=st.form_submit_button('use the above buttons to download the signatures')
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  components.iframe("https://cancer.sanger.ac.uk/signatures/sbs/", height=3000,width=800)
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  #show_pdf('output/ID83/Suggested_Solution/COSMIC_ID83_Decomposed_Solution/ID83_Decomposition_Plots.pdf')
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  components.iframe("https://cancer.sanger.ac.uk/signatures/id/",height=3000,width=800)