Eitan177 commited on
Commit
d457ef4
·
1 Parent(s): 4b9653e

Update app.py

Browse files
Files changed (1) hide show
  1. app.py +7 -5
app.py CHANGED
@@ -61,8 +61,11 @@ with st.form('get signature'):
61
  remove_old_vcf()
62
 
63
  sub=st.form_submit_button('submit input')
64
-
65
- if sub and file_to_lookat !=[]:
 
 
 
66
  #if st.button('get reference genome'):
67
  st.write(os.path.dirname(SigProfilerMatrixGenerator.__file__))
68
  dirtest=os.path.dirname(SigProfilerMatrixGenerator.__file__)
@@ -101,9 +104,8 @@ if sub and file_to_lookat !=[]:
101
  sig.sigProfilerExtractor("vcf", "output", "input", minimum_signatures=1, maximum_signatures=3,nmf_test_conv= 1000,nmf_tolerance= 1e-10,max_nmf_iterations=100000,min_nmf_iterations= 1000)
102
 
103
  #show_pdf('output/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/SBS96_Decomposition_Plots.pdf')
104
- with st.form('signatures'):
105
- dl(file_to_lookat)
106
- sig=st.form_submit_button('use the above buttons to download the signatures')
107
  components.iframe("https://cancer.sanger.ac.uk/signatures/sbs/", height=3000,width=800)
108
  #show_pdf('output/ID83/Suggested_Solution/COSMIC_ID83_Decomposed_Solution/ID83_Decomposition_Plots.pdf')
109
  components.iframe("https://cancer.sanger.ac.uk/signatures/id/",height=3000,width=800)
 
61
  remove_old_vcf()
62
 
63
  sub=st.form_submit_button('submit input')
64
+
65
+ if sub:
66
+ st.session_state.submitted = True
67
+
68
+ if 'submitted' in st.session_state and file_to_lookat !=[]:
69
  #if st.button('get reference genome'):
70
  st.write(os.path.dirname(SigProfilerMatrixGenerator.__file__))
71
  dirtest=os.path.dirname(SigProfilerMatrixGenerator.__file__)
 
104
  sig.sigProfilerExtractor("vcf", "output", "input", minimum_signatures=1, maximum_signatures=3,nmf_test_conv= 1000,nmf_tolerance= 1e-10,max_nmf_iterations=100000,min_nmf_iterations= 1000)
105
 
106
  #show_pdf('output/SBS96/Suggested_Solution/COSMIC_SBS96_Decomposed_Solution/SBS96_Decomposition_Plots.pdf')
107
+ dl(file_to_lookat)
108
+
 
109
  components.iframe("https://cancer.sanger.ac.uk/signatures/sbs/", height=3000,width=800)
110
  #show_pdf('output/ID83/Suggested_Solution/COSMIC_ID83_Decomposed_Solution/ID83_Decomposition_Plots.pdf')
111
  components.iframe("https://cancer.sanger.ac.uk/signatures/id/",height=3000,width=800)