MEIRa / experiment.py
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import sys
import os
import time
import logging
import torch
## Uncomment the following line to make the code deterministic and use CUBLAS_WORKSPACE_CONFIG=:4096:8
torch.use_deterministic_algorithms(True)
import json
import numpy as np
import random
import wandb
from omegaconf import OmegaConf, open_dict
from os import path
from collections import OrderedDict, defaultdict
from transformers import get_linear_schedule_with_warmup
from transformers import AutoModel, AutoTokenizer
from data_utils.utils import load_dataset, load_eval_dataset
import pytorch_utils.utils as utils
from torch.profiler import profile, record_function, ProfilerActivity
from model.entity_ranking_model import EntityRankingModel
from model.mention_proposal import MentionProposalModule
from data_utils.tensorize_dataset import TensorizeDataset
from pytorch_utils.optimization_utils import get_inverse_square_root_decay
from utils_evaluate import coref_evaluation
from typing import Dict, Union, List, Optional
from omegaconf import DictConfig
import copy
logging.basicConfig(format="%(asctime)s - %(message)s", level=logging.INFO)
logger = logging.getLogger()
loss_acc_template_dict = {
"total": 0.0,
"ment_loss": 0.0,
"coref": 0.0,
"mention_count": 0.0,
"processed_docs": 0.0,
"ment_correct": 0.0,
"ment_total": 0.0,
"ment_tp": 0.0,
"ment_pp": 0.0,
"ment_ap": 0.0,
}
class Experiment:
"""Class for training and evaluating coreference models."""
def __init__(self, config: DictConfig):
self.config = config
print("Seeded: ", config.seed)
print("Cuda Available: ", torch.cuda.is_available())
# Whether to train or not
self.eval_model: bool = not self.config.train
# Initialize dictionary to track key training variables
self.train_info = {
"val_perf": 0.0,
"global_steps": 0,
"num_stuck_evals": 0,
"peak_memory": 0.0,
}
self.wandbdata = {}
# Initialize model path attributes
self.model_path = self.config.paths.model_path
self.best_model_path = self.config.paths.best_model_path
if not self.eval_model:
# Step 1 - Initialize model
self._build_model()
# Step 2 - Load Data - Data processing choices such as tokenizer will depend on the model
self._load_data()
# Step 3 - Resume training
self._setup_training()
# Step 4 - Loading the checkpoint also restores the training metadata
self._load_previous_checkpoint()
# All set to resume training
# But first check if training is remaining
if self._is_training_remaining():
self.train()
# Perform final evaluation
if path.exists(self.best_model_path):
# Step 1 - Initialize model
self._initialize_best_model()
# Step 2 - Load evaluation data
self._load_data()
# Step 3 - Perform evaluation
self.perform_final_eval()
else:
logger.info("No model accessible!")
sys.exit(1)
def _build_model(self) -> None:
"""Constructs the model with given config."""
model_params: DictConfig = self.config.model
train_config: DictConfig = self.config.trainer
self.model = EntityRankingModel(
model_config=model_params, train_config=train_config
)
if torch.cuda.is_available():
self.model.cuda(device=self.config.device)
# Print model
utils.print_model_info(self.model)
sys.stdout.flush()
def _load_data(self):
"""Loads and processes the training and evaluation data.
Loads the data concerning all the specified datasets for training and eval.
The first part of this method loads all the data from the preprocessed jsonline files.
In the second half, the loaded data is tensorized for consumption by the model.
Apart from loading and processing the data, the method also populates important
attributes such as:
num_train_docs_map (dict): Dictionary to maintain the number of training
docs per dataset which is useful for implementing sampling in joint training.
num_training_steps (int): Number of total training steps.
eval_per_k_steps (int): Number of gradient updates before each evaluation.
"""
self.data_iter_map, self.conll_data_dir, self.num_split_docs_map = (
{},
{},
{"train": {}, "dev": {}, "test": {}},
)
raw_data_map = {}
max_segment_len: int = self.config.model.doc_encoder.transformer.max_segment_len
model_name: str = self.config.model.doc_encoder.transformer.name
add_speaker_tokens: bool = self.config.model.doc_encoder.add_speaker_tokens
base_data_dir: str = path.abspath(self.config.paths.base_data_dir)
# Load data
for dataset_name, attributes in self.config.datasets.items():
num_train_docs: Optional[int] = attributes.get("num_train_docs", None)
num_dev_docs: Optional[int] = attributes.get("num_dev_docs", None)
num_test_docs: Optional[int] = attributes.get("num_test_docs", None)
singleton_file: Optional[str] = attributes.get("singleton_file", None)
external_md_file: Optional[str] = attributes.get("external_md_file", None)
if singleton_file is not None:
singleton_file = path.join(base_data_dir, singleton_file)
if path.exists(singleton_file):
logger.info(f"Singleton file found: {singleton_file}")
if external_md_file is not None:
external_md_file = path.join(base_data_dir, external_md_file)
if path.exists(external_md_file):
logger.info(
f"External mention detector file found: {external_md_file}"
)
# Data directory is a function of dataset name and tokenizer used
data_dir = path.join(path.join(base_data_dir, dataset_name), model_name)
# Check if speaker tokens are added
if add_speaker_tokens:
pot_data_dir = path.join(
path.join(path.join(base_data_dir, dataset_name)),
model_name + "_speaker",
)
if path.exists(pot_data_dir):
data_dir = pot_data_dir
# Datasets such as litbank have cross validation splits
if attributes.get("cross_val_split", None) is not None:
data_dir = path.join(data_dir, str(attributes.get("cross_val_split")))
logger.info("Data directory: %s" % data_dir)
# CoNLL data dir
if attributes.get("has_conll", False):
conll_dir = path.join(
path.join(path.join(base_data_dir, dataset_name)), "conll"
)
if attributes.get("cross_val_split", None) is not None:
# LitBank like datasets have cross validation splits
conll_dir = path.join(
conll_dir, str(attributes.get("cross_val_split"))
)
if path.exists(conll_dir):
self.conll_data_dir[dataset_name] = conll_dir
self.num_split_docs_map["train"][dataset_name] = num_train_docs
self.num_split_docs_map["dev"][dataset_name] = num_dev_docs
self.num_split_docs_map["test"][dataset_name] = num_test_docs
if self.eval_model:
print("In Eval Model DataLoader")
raw_data_map[dataset_name] = load_eval_dataset(
data_dir,
external_md_file=external_md_file,
max_segment_len=max_segment_len,
dataset_name=dataset_name,
)
else:
raw_data_map[dataset_name] = load_dataset(
data_dir,
singleton_file=singleton_file,
num_dev_docs=num_dev_docs,
num_test_docs=num_test_docs,
max_segment_len=max_segment_len,
dataset_name=dataset_name,
)
# Tensorize data
data_processor = TensorizeDataset(
self.model.get_tokenizer(),
remove_singletons=(not self.config.keep_singletons),
)
if self.eval_model:
for split in ["dev", "test"]:
self.data_iter_map[split] = {}
for dataset in raw_data_map:
for split in raw_data_map[dataset]:
self.data_iter_map[split][dataset] = data_processor.tensorize_data(
raw_data_map[dataset][split], training=False
)
else:
# Training
for split in ["train", "dev", "test"]:
self.data_iter_map[split] = {}
training = split == "train"
for dataset in raw_data_map:
self.data_iter_map[split][dataset] = data_processor.tensorize_data(
raw_data_map[dataset][split], training=training
)
# Estimate number of training steps
if self.config.trainer.eval_per_k_steps is None:
# Eval steps is 1 epoch (with subsampling) of all the datasets used in joint training
self.config.trainer.eval_per_k_steps = sum(
self.num_split_docs_map["train"].values()
)
self.config.trainer.num_training_steps = (
self.config.trainer.eval_per_k_steps * self.config.trainer.max_evals
)
logger.info(
f"Number of training steps: {self.config.trainer.num_training_steps}"
)
logger.info(f"Eval per k steps: {self.config.trainer.eval_per_k_steps}")
def _load_previous_checkpoint(self):
"""Loads the last checkpoint or best checkpoint."""
# Resume training
print("Model Path: ", self.model_path)
print("Model Initialised:", torch.cuda.memory_summary(self.config.device))
if path.exists(self.model_path):
self.load_model(self.model_path, last_checkpoint=True)
logger.info("Model loaded\n")
print(
"Loaded Model Returned:", torch.cuda.memory_summary(self.config.device)
)
else:
# Starting training
logger.info("Model initialized\n")
sys.stdout.flush()
def _is_training_remaining(self):
"""Check if training is done or remaining.
There are two cases where we don't resume training:
(a) The dev performance has not improved for the allowed patience parameter number of evaluations.
(b) Number of gradient updates is already >= Total training steps.
Returns:
bool: If true, we resume training. Otherwise do final evaluation.
"""
if self.train_info["num_stuck_evals"] >= self.config.trainer.patience:
return False
if self.train_info["global_steps"] >= self.config.trainer.num_training_steps:
return False
return True
def _setup_training(self):
"""Initialize optimizer and bookkeeping variables for training."""
# Dictionary to track key training variables
self.train_info = {
"val_perf": 0.0,
"global_steps": 0,
"num_stuck_evals": 0,
"peak_memory": 0.0,
"max_mem": 0.0,
}
# Initialize optimizers
self._initialize_optimizers()
def _initialize_optimizers(self):
"""Initialize model + optimizer(s). Check if there's a checkpoint in which case we resume from there."""
optimizer_config: DictConfig = self.config.optimizer
train_config: DictConfig = self.config.trainer
self.optimizer, self.optim_scheduler = {}, {}
if torch.cuda.is_available():
# Gradient scaler required for mixed precision training
self.scaler = torch.GradScaler("cuda")
else:
self.scaler = None
# Optimizer for clustering params
self.optimizer["mem"] = torch.optim.Adam(
self.model.get_params()[1], lr=optimizer_config.init_lr, eps=1e-6
)
if optimizer_config.lr_decay == "inv":
self.optim_scheduler["mem"] = get_inverse_square_root_decay(
self.optimizer["mem"], num_warmup_steps=0
)
else:
# No warmup steps for model params
self.optim_scheduler["mem"] = get_linear_schedule_with_warmup(
self.optimizer["mem"],
num_warmup_steps=0,
num_training_steps=train_config.num_training_steps,
)
if self.config.model.doc_encoder.finetune:
# Optimizer for document encoder
no_decay = [
"bias",
"LayerNorm.weight",
] # No weight decay for bias and layernorm weights
encoder_params = self.model.get_params(named=True)[0]
grouped_param = [
{
"params": [
p
for n, p in encoder_params
if not any(nd in n for nd in no_decay)
],
"lr": optimizer_config.fine_tune_lr,
"weight_decay": 1e-2,
},
{
"params": [
p for n, p in encoder_params if any(nd in n for nd in no_decay)
],
"lr": optimizer_config.fine_tune_lr,
"weight_decay": 0.0,
},
]
self.optimizer["doc"] = torch.optim.AdamW(
grouped_param, lr=optimizer_config.fine_tune_lr, eps=1e-6
)
# Scheduler for document encoder
num_warmup_steps = int(0.1 * train_config.num_training_steps)
if optimizer_config.lr_decay == "inv":
self.optim_scheduler["doc"] = get_inverse_square_root_decay(
self.optimizer["doc"], num_warmup_steps=num_warmup_steps
)
else:
self.optim_scheduler["doc"] = get_linear_schedule_with_warmup(
self.optimizer["doc"],
num_warmup_steps=num_warmup_steps,
num_training_steps=train_config.num_training_steps,
)
def agg(self, datadepdict):
agg_dict = defaultdict(float)
for dataset in datadepdict:
for key in datadepdict[dataset]:
agg_dict[key] += datadepdict[dataset][key]
agg_dict["loss_norm"] = (
agg_dict["coref"] / agg_dict["mention_count"]
+ agg_dict["ment_loss"] / agg_dict["ment_total"]
if agg_dict["mention_count"] > 0
else 0
)
agg_dict["ment_acc"] = agg_dict["ment_correct"] / agg_dict["ment_total"]
agg_dict["ment_prec"] = (
agg_dict["ment_tp"] / agg_dict["ment_pp"] if agg_dict["ment_pp"] > 0 else 0
)
agg_dict["ment_rec"] = (
agg_dict["ment_tp"] / agg_dict["ment_ap"] if agg_dict["ment_ap"] > 0 else 0
)
agg_dict["ment_f1"] = (
2
* (agg_dict["ment_prec"] * agg_dict["ment_rec"])
/ (agg_dict["ment_prec"] + agg_dict["ment_rec"])
if (agg_dict["ment_prec"] + agg_dict["ment_rec"]) > 0
else 0
)
return agg_dict
def train(self) -> None:
"""Method for training the model.
This method implements the training loop.
Within the training loop, the model is periodically evaluated on the dev set(s).
"""
model, optimizer, scheduler, scaler = (
self.model,
self.optimizer,
self.optim_scheduler,
self.scaler,
)
model.train()
optimizer_config, train_config = self.config.optimizer, self.config.trainer
start_time = time.time()
eval_time = {"total_time": 0, "num_evals": 0}
print("Started Training..")
while True:
logger.info("Steps done %d" % (self.train_info["global_steps"]))
train_data = self.runtime_load_dataset("train")
np.random.shuffle(train_data)
logger.info("Per epoch training steps: %d" % len(train_data))
logger.info("Per epoch training steps: %d" % len(train_data))
encoder_params, task_params = model.get_params()
stat_per_dataset = defaultdict(
lambda: copy.deepcopy(loss_acc_template_dict)
)
agg_stat = self.agg
# Training "epoch" -> May not correspond to actual epoch
for cur_document in train_data:
def handle_example(document: Dict) -> Union[None, float]:
self.train_info["global_steps"] += 1
for key in optimizer:
optimizer[key].zero_grad()
loss_dict: Dict = model.forward_training(document)
total_loss = loss_dict["total"]
if total_loss is None or torch.isnan(total_loss):
print("Problem with Loss. Should not occur often")
return None
total_loss.backward()
# Gradient clipping
try:
for name_ind, param_group in enumerate(
[encoder_params, task_params]
):
torch.nn.utils.clip_grad_norm_(
param_group,
optimizer_config.max_gradient_norm,
error_if_nonfinite=True,
)
except RuntimeError:
print("Non Finite Gradient")
return None
for key in optimizer:
self.wandbdata[key + "_lr"] = scheduler[key].get_last_lr()[0]
for key in optimizer:
optimizer[key].step()
scheduler[key].step()
loss_dict_items = {}
for key in loss_dict:
loss_dict_items[key] = loss_dict[key].item()
dataset_name = document["dataset_name"]
# print(f"Total loss {cur_document['doc_key']}: {total_loss.item()}")
for key in loss_dict_items:
stat_per_dataset[dataset_name][key] += loss_dict_items[key]
stat_per_dataset[dataset_name]["processed_docs"] += 1
return total_loss.item()
loss = handle_example(cur_document)
if self.train_info["global_steps"] % train_config.log_frequency == 0:
max_mem = (
(
torch.cuda.max_memory_allocated(self.config.device)
/ (1024**3)
)
if torch.cuda.is_available()
else 0.0
)
if self.train_info.get("max_mem", 0.0) < max_mem:
self.train_info["max_mem"] = max_mem
if loss is not None:
logger.info(
"{} {:.3f} Max mem {:.1f} GB".format(
cur_document["doc_key"],
loss,
max_mem,
)
)
sys.stdout.flush()
if torch.cuda.is_available():
torch.cuda.reset_peak_memory_stats()
if train_config.eval_per_k_steps and (
self.train_info["global_steps"] % train_config.eval_per_k_steps == 0
):
print("Eval needs to be done here")
coref_dict = {}
print(stat_per_dataset)
if self.config.use_wandb:
self._wandb_log(
split="train",
stat_per_dataset=stat_per_dataset,
agg_stat=agg_stat,
coref_dict=coref_dict,
step=self.train_info["global_steps"]
// train_config.eval_per_k_steps,
)
stat_per_dataset = defaultdict(
lambda: copy.deepcopy(loss_acc_template_dict)
)
macro_fscore = self.periodic_model_eval()
model.train()
# Get elapsed time
elapsed_time = time.time() - start_time
start_time = time.time()
logger.info(
"Steps: %d, Micro F1: %.1f, Max Micro F1: %.1f, Time: %.2f"
% (
self.train_info["global_steps"],
macro_fscore,
self.train_info["val_perf"],
elapsed_time,
)
)
# Check stopping criteria
if not self._is_training_remaining():
break
# Check stopping criteria
if not self._is_training_remaining():
break
logger.handlers[0].flush()
def runtime_load_dataset(self, split):
# Shuffle and load the training data
data = []
for dataset, dataset_data in self.data_iter_map[split].items():
np.random.shuffle(
dataset_data
) ### Commenting this so that we can have a deterministic training
if self.num_split_docs_map[split].get(dataset, None) is not None:
# Subsampling the data - This is useful in joint training
logger.info(
f"{dataset}: Subsampled {self.num_split_docs_map[split].get(dataset)}"
)
random_indices = range(self.num_split_docs_map[split].get(dataset))
data += [dataset_data[idx] for idx in random_indices]
else:
data += dataset_data
return data
def _wandb_log(self, split, stat_per_dataset, agg_stat, coref_dict, step=None):
for dataset_name in stat_per_dataset:
for metric_vals in stat_per_dataset[dataset_name]:
wandb.log(
data={
f"{split}/{dataset_name}/{metric_vals}": stat_per_dataset[
dataset_name
][metric_vals]
},
step=step,
)
if stat_per_dataset[dataset_name]["mention_count"] > 0.0:
ment_prec = (
stat_per_dataset[dataset_name]["ment_tp"]
/ stat_per_dataset[dataset_name]["ment_pp"]
if stat_per_dataset[dataset_name]["ment_pp"] > 0
else 0
)
ment_rec = (
stat_per_dataset[dataset_name]["ment_tp"]
/ stat_per_dataset[dataset_name]["ment_ap"]
if stat_per_dataset[dataset_name]["ment_ap"] > 0
else 0
)
ment_f1 = (
2 * (ment_prec * ment_rec) / (ment_prec + ment_rec)
if (ment_prec + ment_rec) > 0
else 0
)
wandb.log(
data={
f"{split}/{dataset_name}/loss_norm": stat_per_dataset[
dataset_name
]["coref"]
/ stat_per_dataset[dataset_name]["mention_count"]
+ stat_per_dataset[dataset_name]["ment_loss"]
/ stat_per_dataset[dataset_name]["ment_total"],
f"{split}/{dataset_name}/ment_acc": stat_per_dataset[
dataset_name
]["ment_correct"]
/ stat_per_dataset[dataset_name]["ment_total"],
f"{split}/{dataset_name}/ment_prec": ment_prec,
f"{split}/{dataset_name}/ment_rec": ment_rec,
f"{split}/{dataset_name}/ment_f1": ment_f1,
},
step=step,
)
else:
print("No mentions processed. Should not occur many times.")
if agg_stat:
for metric in agg_stat(stat_per_dataset):
wandb.log(
data={f"{split}/{metric}": agg_stat(stat_per_dataset)[metric]},
step=step,
)
for dataset in coref_dict:
for key in coref_dict[dataset]:
# Log result for individual metrics
if isinstance(coref_dict[dataset][key], dict):
wandb.log(
data={
f"{split}/{dataset}/{key}": coref_dict[dataset][key].get(
"fscore", 0.0
)
},
step=step,
)
# Log the overall F-score
wandb.log(
data={
f"{split}/{dataset}/CoNLL": coref_dict[dataset].get("fscore", 0.0)
},
step=step,
)
wandb.log(
data={
f"{split}/{dataset}/Micro-F1": coref_dict[dataset].get(
"f1_micro", 0.0
)
},
step=step,
)
wandb.log(
data={
f"{split}/{dataset}/Macro-F1": coref_dict[dataset].get(
"f1_macro", 0.0
)
},
step=step,
)
wandb.log(data=self.wandbdata, step=step)
@torch.no_grad()
def periodic_model_eval(self) -> float:
"""Method for evaluating and saving the model during the training loop.
Returns:
float: Average CoNLL F-score over all the development sets of datasets.
"""
self.model.eval()
## Dev Loss Calculations:
dev_data = self.runtime_load_dataset("dev")
np.random.shuffle(dev_data)
stat_per_dataset = defaultdict(lambda: copy.deepcopy(loss_acc_template_dict))
agg_stat = self.agg
for cur_document in dev_data:
def handle_example(document: Dict) -> Union[None, float]:
loss_dict: Dict = self.model.forward_training(document)
total_loss = loss_dict["total"]
if total_loss is None or torch.isnan(total_loss):
print("Problem with Loss. Should not occur many times")
return None
loss_dict_items = {}
for key in loss_dict:
loss_dict_items[key] = loss_dict[key].item()
dataset_name = document["dataset_name"]
for key in loss_dict_items:
stat_per_dataset[dataset_name][key] += loss_dict_items[key]
stat_per_dataset[dataset_name]["processed_docs"] += 1
return total_loss.item()
loss = handle_example(cur_document)
if loss is None:
continue
# Dev performance
coref_dict = {}
train_config = self.config.trainer
for dataset in self.data_iter_map["dev"]:
for go in [False]:
for tf in [False]:
result_dict = coref_evaluation(
self.config,
self.model,
self.data_iter_map,
dataset,
teacher_force=tf,
gold_mentions=go,
_iter="_"
+ str(
self.train_info["global_steps"]
// train_config.eval_per_k_steps
),
conll_data_dir=self.conll_data_dir,
)
coref_dict[dataset] = result_dict
if self.config.use_wandb:
self._wandb_log(
split="dev",
stat_per_dataset=stat_per_dataset,
agg_stat=agg_stat,
coref_dict=coref_dict,
step=self.train_info["global_steps"] // train_config.eval_per_k_steps,
)
# Calculate Mean F-score
fscore = sum([coref_dict[dataset]["fscore"] for dataset in coref_dict]) / len(
coref_dict
)
micro_fscore = sum(
[coref_dict[dataset]["f1_micro"] for dataset in coref_dict]
) / len(coref_dict)
macro_fscore = sum(
[coref_dict[dataset]["f1_macro"] for dataset in coref_dict]
) / len(coref_dict)
logger.info(
"Avg Macro F1: %.1f, Max Micro F1: %.1f"
% (macro_fscore, self.train_info["val_perf"])
)
logger.info("Avg Macro F1: %.1f" % (macro_fscore))
# Update model if dev performance improves
if macro_fscore > self.train_info["val_perf"]:
# Update training bookkeeping variables
self.train_info["num_stuck_evals"] = 0
self.train_info["val_perf"] = macro_fscore
# Save the best model
logger.info("Saving best model")
self.save_model(self.best_model_path, last_checkpoint=False)
else:
self.train_info["num_stuck_evals"] += 1
# Save model
if self.config.trainer.to_save_model:
self.save_model(self.model_path, last_checkpoint=True)
# Go back to training mode
self.model.train()
return macro_fscore
@torch.no_grad()
def perform_final_eval(self) -> None:
"""Method to evaluate the model after training has finished."""
self.model.eval()
base_output_dict = OmegaConf.to_container(self.config)
perf_summary = {"best_perf": self.train_info["val_perf"]}
if self.config.paths.model_dir:
perf_summary["model_dir"] = path.normpath(self.config.paths.model_dir)
logger.info(
"Max training memory: %.1f GB" % self.train_info.get("max_mem", 0.0)
)
logger.info("Validation performance: %.1f" % self.train_info["val_perf"])
perf_file_dict = {}
dataset_output_dict = {}
for split in ["dev", "test"]:
perf_summary[split] = {}
logger.info("\n")
logger.info("%s" % split.capitalize())
coref_dict = {}
for dataset in self.data_iter_map.get(split, []):
dataset_dir = path.join(self.config.paths.model_dir, dataset)
if not path.exists(dataset_dir):
os.makedirs(dataset_dir)
if dataset not in dataset_output_dict:
dataset_output_dict[dataset] = {}
if dataset not in perf_file_dict:
perf_file_dict[dataset] = path.join(dataset_dir, f"perf.json")
print("Dataset Name:", self.config.datasets[dataset].name)
logger.info("Dataset: %s\n" % self.config.datasets[dataset].name)
for go in [False]:
for tf in [False]:
result_dict = coref_evaluation(
self.config,
self.model,
self.data_iter_map,
dataset=dataset,
split=split,
teacher_force=tf,
gold_mentions=go,
final_eval=True,
conll_data_dir=self.conll_data_dir,
)
coref_dict[dataset] = result_dict
dataset_output_dict[dataset][split] = result_dict
perf_summary[split][dataset] = result_dict["f1_micro"]
if self.config.use_wandb:
self._wandb_log(
split=split,
stat_per_dataset={},
agg_stat=None,
coref_dict=coref_dict,
step=None,
)
sys.stdout.flush()
for dataset, output_dict in dataset_output_dict.items():
perf_file = perf_file_dict[dataset]
json.dump(output_dict, open(perf_file, "w"), indent=2)
logger.info("Final performance summary at %s" % path.abspath(perf_file))
summary_file = path.join(self.config.paths.model_dir, "perf.json")
json.dump(perf_summary, open(summary_file, "w"), indent=2)
logger.info("Performance summary file: %s" % path.abspath(summary_file))
def _initialize_best_model(self):
checkpoint = torch.load(
self.best_model_path,
map_location="cpu",
)
config = checkpoint["config"]
## Due to version changes -- these changes are necessary
# if
if self.config.get("override_encoder", False):
model_config = config.model
print(type(self.config.model.doc_encoder.transformer))
print(self.config.model.doc_encoder.transformer)
model_config.doc_encoder.transformer = (
self.config.model.doc_encoder.transformer
)
# Override memory
# For e.g., can test with a different bounded memory size
if self.config.get("override_memory", False):
model_config = config.model
model_config.memory = self.config.model.memory
with open_dict(config):
print("Config change")
config.model.mention_params.ext_ment = (
self.config.model.mention_params.ext_ment
)
config = utils.fill_missing_configs(config, self.config)
print("Type: ", config.model.memory.type)
self.config.model = config.model
self.train_info = checkpoint["train_info"]
if self.config.model.doc_encoder.finetune:
# Load the document encoder params if encoder is finetuned
doc_encoder_dir = path.join(
path.dirname(self.best_model_path),
self.config.paths.doc_encoder_dirname,
)
if path.exists(doc_encoder_dir):
logger.info(
"Loading document encoder from %s" % path.abspath(doc_encoder_dir)
)
config.model.doc_encoder.transformer.model_str = doc_encoder_dir
self.model = EntityRankingModel(config.model, config.trainer)
# Document encoder parameters will be loaded via the huggingface initialization
self.model.load_state_dict(checkpoint["model"], strict=False)
if torch.cuda.is_available():
self.model.cuda(device=self.config.device)
def load_model(self, location: str, last_checkpoint=True) -> None:
"""Load model from given location.
Args:
location: str
Location of checkpoint
last_checkpoint: bool
Whether the checkpoint is the last one saved or not.
If false, don't load optimizers, schedulers, and other training variables.
"""
checkpoint = torch.load(location, map_location="cpu")
logger.info("Loading model from %s" % path.abspath(location))
# self.config = checkpoint["config"] ## Commented out so that it does not load the config of the trained model. Removed comment
self.model.load_state_dict(
checkpoint["model"], strict=False
) ## No encoder in this model so strict=False is compulsary. No other weight missing. Checked
# self.train_info = checkpoint["train_info"] ## No train info transfer too. ## Transferring
if self.config.model.doc_encoder.finetune:
# Load the document encoder params if encoder is finetuned
doc_encoder_dir = path.join(
path.dirname(location), self.config.paths.doc_encoder_dirname
)
logger.info(
"Loading document encoder from %s" % path.abspath(doc_encoder_dir)
)
# Load the encoder
self.model.mention_proposer.doc_encoder.lm_encoder = (
AutoModel.from_pretrained(pretrained_model_name_or_path=doc_encoder_dir)
)
self.model.mention_proposer.doc_encoder.tokenizer = (
AutoTokenizer.from_pretrained(
pretrained_model_name_or_path=doc_encoder_dir,
clean_up_tokenization_spaces=True,
)
)
if self.model.mention_proposer.doc_encoder.config.finetune:
self.model.mention_proposer.doc_encoder.lm_encoder.gradient_checkpointing_enable()
if torch.cuda.is_available():
self.model.cuda(device=self.config.device)
print("Loaded Model:", torch.cuda.memory_summary())
print(
"Gradient checkpointing enabled? ", torch.autograd.grad_checkpoint_enabled()
)
del checkpoint
torch.cuda.empty_cache()
def save_model(self, location: os.PathLike, last_checkpoint=True) -> None:
"""Save model.
Args:
location: Location of checkpoint
last_checkpoint:
Whether the checkpoint is the last one saved or not.
If false, don't save optimizers and schedulers which take up a lot of space.
"""
model_state_dict = OrderedDict(self.model.state_dict())
doc_encoder_state_dict = {}
# Separate the doc_encoder state dict
# We will save the model in two parts:
# (a) Doc encoder parameters - Useful for final upload to huggingface
# (b) Rest of the model parameters, optimizers, schedulers, and other bookkeeping variables
for key in self.model.state_dict():
if "lm_encoder." in key:
doc_encoder_state_dict[key] = model_state_dict[key]
del model_state_dict[key]
# Save the document encoder params
if self.config.model.doc_encoder.finetune:
doc_encoder_dir = path.join(
path.dirname(location), self.config.paths.doc_encoder_dirname
)
if not path.exists(doc_encoder_dir):
os.makedirs(doc_encoder_dir)
logger.info(f"Encoder saved at {path.abspath(doc_encoder_dir)}")
# Save the encoder
self.model.mention_proposer.doc_encoder.lm_encoder.save_pretrained(
save_directory=doc_encoder_dir, save_config=True
)
# Save the tokenizer
self.model.mention_proposer.doc_encoder.tokenizer.save_pretrained(
doc_encoder_dir
)
save_dict = {
"train_info": self.train_info,
"model": model_state_dict,
"rng_state": torch.get_rng_state(),
"np_rng_state": np.random.get_state(),
"config": self.config,
}
if self.scaler is not None:
save_dict["scaler"] = self.scaler.state_dict()
if last_checkpoint:
# For last checkpoint save the optimizer and scheduler states as well
save_dict["optimizer"] = {}
save_dict["scheduler"] = {}
param_groups: List[str] = (
["mem", "doc"] if self.config.model.doc_encoder.finetune else ["mem"]
)
for param_group in param_groups:
save_dict["optimizer"][param_group] = self.optimizer[
param_group
].state_dict()
save_dict["scheduler"][param_group] = self.optim_scheduler[
param_group
].state_dict()
torch.save(save_dict, location)
logger.info(f"Model saved at: {path.abspath(location)}")