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Browse files- .ipynb_checkpoints/app-checkpoint.py +2 -2
- app.py +2 -2
.ipynb_checkpoints/app-checkpoint.py
CHANGED
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@@ -27,7 +27,7 @@ from gradio_molecule3d import Molecule3D
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# Biopython imports
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from Bio.PDB import PDBParser, Select, PDBIO
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from Bio.PDB.DSSP import DSSP
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-
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from matplotlib import cm # For color mapping
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from matplotlib.colors import Normalize
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@@ -225,7 +225,7 @@ def score_to_color(score):
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def process_pdb(pdb_id):
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# Fetch PDB file
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pdbl = PDBList
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pdb_path = pdbl.retrieve_pdb_file(pdb_id, pdir='pdb_files', file_format='pdb')
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if not pdb_path or not os.path.exists(pdb_path):
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# Biopython imports
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from Bio.PDB import PDBParser, Select, PDBIO
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from Bio.PDB.DSSP import DSSP
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from Bio.PDB import PDBList # Corrected import
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from matplotlib import cm # For color mapping
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from matplotlib.colors import Normalize
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def process_pdb(pdb_id):
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# Fetch PDB file
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+
pdbl = PDBList() # Corrected instantiation
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pdb_path = pdbl.retrieve_pdb_file(pdb_id, pdir='pdb_files', file_format='pdb')
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if not pdb_path or not os.path.exists(pdb_path):
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app.py
CHANGED
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@@ -27,7 +27,7 @@ from gradio_molecule3d import Molecule3D
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| 27 |
# Biopython imports
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| 28 |
from Bio.PDB import PDBParser, Select, PDBIO
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| 29 |
from Bio.PDB.DSSP import DSSP
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| 30 |
-
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| 31 |
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| 32 |
from matplotlib import cm # For color mapping
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| 33 |
from matplotlib.colors import Normalize
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@@ -225,7 +225,7 @@ def score_to_color(score):
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| 225 |
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| 226 |
def process_pdb(pdb_id):
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| 227 |
# Fetch PDB file
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| 228 |
-
pdbl = PDBList
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pdb_path = pdbl.retrieve_pdb_file(pdb_id, pdir='pdb_files', file_format='pdb')
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| 230 |
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if not pdb_path or not os.path.exists(pdb_path):
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| 27 |
# Biopython imports
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| 28 |
from Bio.PDB import PDBParser, Select, PDBIO
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| 29 |
from Bio.PDB.DSSP import DSSP
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| 30 |
+
from Bio.PDB import PDBList # Corrected import
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| 31 |
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| 32 |
from matplotlib import cm # For color mapping
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| 33 |
from matplotlib.colors import Normalize
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|
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| 225 |
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| 226 |
def process_pdb(pdb_id):
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| 227 |
# Fetch PDB file
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| 228 |
+
pdbl = PDBList() # Corrected instantiation
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| 229 |
pdb_path = pdbl.retrieve_pdb_file(pdb_id, pdir='pdb_files', file_format='pdb')
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if not pdb_path or not os.path.exists(pdb_path):
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