Update app.py

app.py

@@ -24,10 +24,17 @@ os.environ["PATH"] += f":{os.environ['HOME']}/edirect"
 print("Current PATH:", os.environ["PATH"])
 subprocess.run("which esummary", shell=True)
 accession = "KU131308"
+print(accession)
+test_cmd = f'{os.environ["HOME"]}/edirect/esummary -db nuccore -id KU131308 -format medline | egrep "PUBMED|isolate"'
+result = subprocess.run(test_cmd, shell=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE, text=True)
+print("EDirect output:\n", result.stdout)
+print("EDirect error:\n", result.stderr)
+
 cmd = f'{os.environ["HOME"]}/edirect/esummary -db nuccore -id {accession} -format medline | egrep "PUBMED|isolate"'
 result = subprocess.run(cmd, shell=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE, text=True)
 output = result.stdout
 print(output)
+print("done")
 
 @lru_cache(maxsize=128)
 def classify_sample_location_cached(accession):