Update app.py

app.py

@@ -23,11 +23,11 @@ else:
 os.environ["PATH"] += f":{os.environ['HOME']}/edirect"
 print("Current PATH:", os.environ["PATH"])
 subprocess.run("which esummary", shell=True)
-test_cmd = f'{os.environ["HOME"]}/edirect/esummary -db nuccore -id KU131308 -format medline'
-result = subprocess.run(test_cmd, shell=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE, text=True)
-print("EDirect output:\n", result.stdout)
-print("EDirect error:\n", result.stderr)
-
+accession = "KU131308"
+cmd = f'{os.environ["HOME"]}/edirect/esummary -db nuccore -id {accession} -format medline | egrep "PUBMED|isolate"'
+result = subprocess.run(cmd, shell=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE, text=True)
+output = result.stdout
+print(output)
 
 @lru_cache(maxsize=128)
 def classify_sample_location_cached(accession):