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Duplicated from  libokj/DeepSEQreen_NAR_v3

libokj

/

DeepSEQreen_fast_build

like 1

Running on CPU Upgrade

• "__builtin__.dict",
• "deepscreen.data.utils.split.random_split",
• "torch.optim.lr_scheduler.ReduceLROnPlateau",
• "torch._utils._rebuild_parameter",
• "deepscreen.data.featurizers.fingerprint.smiles_to_fingerprint",
• "torch.LongStorage",
• "collections.defaultdict",
• "__builtin__.list",
• "deepscreen.data.featurizers.categorical.sequence_to_label",
• "functools.partial",
• "torch._utils._rebuild_tensor_v2",
• "typing.Any",
• "omegaconf.base.Metadata",
• "__builtin__.long",
• "collections.OrderedDict",
• "torch.optim.adam.Adam",
• "omegaconf.dictconfig.DictConfig",
• "omegaconf.base.ContainerMetadata",
• "torch.FloatStorage",
• "deepscreen.data.utils.collator.collate_fn",
• "omegaconf.listconfig.ListConfig",
• "omegaconf.nodes.AnyNode"

How to fix it?

• "__builtin__.dict",
• "deepscreen.data.utils.split.random_split",
• "torch.optim.lr_scheduler.ReduceLROnPlateau",
• "torch._utils._rebuild_parameter",
• "deepscreen.data.featurizers.fingerprint.smiles_to_fingerprint",
• "torch.LongStorage",
• "collections.defaultdict",
• "__builtin__.list",
• "deepscreen.data.featurizers.categorical.sequence_to_label",
• "functools.partial",
• "torch._utils._rebuild_tensor_v2",
• "typing.Any",
• "omegaconf.base.Metadata",
• "__builtin__.long",
• "collections.OrderedDict",
• "torch.optim.adam.Adam",
• "omegaconf.dictconfig.DictConfig",
• "omegaconf.base.ContainerMetadata",
• "torch.FloatStorage",
• "deepscreen.data.utils.collator.collate_fn",
• "omegaconf.listconfig.ListConfig",
• "omegaconf.nodes.AnyNode"

How to fix it?

• "__builtin__.dict",
• "deepscreen.data.utils.split.random_split",
• "torch.optim.lr_scheduler.ReduceLROnPlateau",
• "torch._utils._rebuild_parameter",
• "collections.defaultdict",
• "__builtin__.list",
• "deepscreen.data.featurizers.categorical.sequence_to_label",
• "functools.partial",
• "torch._utils._rebuild_tensor_v2",
• "typing.Any",
• "omegaconf.base.Metadata",
• "__builtin__.long",
• "collections.OrderedDict",
• "torch.optim.adam.Adam",
• "omegaconf.dictconfig.DictConfig",
• "omegaconf.base.ContainerMetadata",
• "torch.FloatStorage",
• "deepscreen.data.utils.collator.collate_fn",
• "omegaconf.listconfig.ListConfig",
• "omegaconf.nodes.AnyNode"

How to fix it?

• "__builtin__.dict",
• "deepscreen.data.utils.split.random_split",
• "torch.optim.lr_scheduler.ReduceLROnPlateau",
• "torch._utils._rebuild_parameter",
• "collections.defaultdict",
• "__builtin__.list",
• "deepscreen.data.featurizers.categorical.sequence_to_label",
• "functools.partial",
• "torch._utils._rebuild_tensor_v2",
• "typing.Any",
• "omegaconf.base.Metadata",
• "__builtin__.long",
• "collections.OrderedDict",
• "torch.optim.adam.Adam",
• "omegaconf.dictconfig.DictConfig",
• "omegaconf.base.ContainerMetadata",
• "torch.FloatStorage",
• "deepscreen.data.utils.collator.collate_fn",
• "omegaconf.listconfig.ListConfig",
• "omegaconf.nodes.AnyNode"

How to fix it?

• "__builtin__.dict",
• "deepscreen.data.utils.split.random_split",
• "torch.optim.lr_scheduler.ReduceLROnPlateau",
• "torch._utils._rebuild_parameter",
• "collections.defaultdict",
• "__builtin__.list",
• "deepscreen.data.featurizers.categorical.sequence_to_label",
• "functools.partial",
• "torch._utils._rebuild_tensor_v2",
• "typing.Any",
• "omegaconf.base.Metadata",
• "__builtin__.long",
• "collections.OrderedDict",
• "torch.optim.adam.Adam",
• "omegaconf.dictconfig.DictConfig",
• "omegaconf.base.ContainerMetadata",
• "torch.FloatStorage",
• "deepscreen.data.utils.collator.collate_fn",
• "omegaconf.listconfig.ListConfig",
• "omegaconf.nodes.AnyNode"

How to fix it?

• "deepscreen.data.utils.collator.collate_fn",
• "torch.optim.adam.Adam",
• "functools.partial",
• "deepscreen.data.featurizers.categorical.smiles_to_label",
• "collections.OrderedDict",
• "typing.Any",
• "torch.FloatStorage",
• "__builtin__.list",
• "collections.defaultdict",
• "torch._utils._rebuild_tensor_v2",
• "pathlib.PosixPath",
• "__builtin__.long",
• "torch.optim.lr_scheduler.ReduceLROnPlateau",
• "omegaconf.base.Metadata",
• "deepscreen.data.featurizers.categorical.fasta_to_label",
• "omegaconf.nodes.AnyNode",
• "omegaconf.listconfig.ListConfig",
• "omegaconf.base.ContainerMetadata",
• "__builtin__.dict"

How to fix it?

• "deepscreen.data.utils.collator.collate_fn",
• "torch.optim.adam.Adam",
• "functools.partial",
• "deepscreen.data.featurizers.categorical.smiles_to_label",
• "collections.OrderedDict",
• "typing.Any",
• "torch.FloatStorage",
• "__builtin__.list",
• "collections.defaultdict",
• "torch._utils._rebuild_tensor_v2",
• "pathlib.PosixPath",
• "__builtin__.long",
• "torch.optim.lr_scheduler.ReduceLROnPlateau",
• "omegaconf.base.Metadata",
• "deepscreen.data.featurizers.categorical.fasta_to_label",
• "omegaconf.nodes.AnyNode",
• "omegaconf.listconfig.ListConfig",
• "omegaconf.base.ContainerMetadata",
• "__builtin__.dict"

How to fix it?

• "__builtin__.dict",
• "deepscreen.data.utils.split.random_split",
• "torch.optim.lr_scheduler.ReduceLROnPlateau",
• "torch._utils._rebuild_parameter",
• "torch.LongStorage",
• "collections.defaultdict",
• "__builtin__.list",
• "deepscreen.models.predictors.drug_ban.drug_featurizer",
• "deepscreen.data.featurizers.categorical.sequence_to_label",
• "functools.partial",
• "torch._utils._rebuild_tensor_v2",
• "typing.Any",
• "omegaconf.base.Metadata",
• "__builtin__.long",
• "collections.OrderedDict",
• "torch.optim.adam.Adam",
• "omegaconf.dictconfig.DictConfig",
• "omegaconf.base.ContainerMetadata",
• "torch.FloatStorage",
• "deepscreen.data.utils.collator.collate_fn",
• "omegaconf.listconfig.ListConfig",
• "omegaconf.nodes.AnyNode"

How to fix it?

• "__builtin__.dict",
• "deepscreen.data.utils.split.random_split",
• "torch.optim.lr_scheduler.ReduceLROnPlateau",
• "torch._utils._rebuild_parameter",
• "torch.LongStorage",
• "collections.defaultdict",
• "__builtin__.list",
• "deepscreen.models.predictors.drug_ban.drug_featurizer",
• "deepscreen.data.featurizers.categorical.sequence_to_label",
• "functools.partial",
• "torch._utils._rebuild_tensor_v2",
• "typing.Any",
• "omegaconf.base.Metadata",
• "__builtin__.long",
• "collections.OrderedDict",
• "torch.optim.adam.Adam",
• "omegaconf.dictconfig.DictConfig",
• "omegaconf.base.ContainerMetadata",
• "torch.FloatStorage",
• "deepscreen.data.utils.collator.collate_fn",
• "omegaconf.listconfig.ListConfig",
• "omegaconf.nodes.AnyNode"

How to fix it?

• "torch.optim.lr_scheduler.ReduceLROnPlateau",
• "omegaconf.base.Metadata",
• "deepscreen.data.featurizers.categorical.sequence_to_label",
• "functools.partial",
• "tokenizers.AddedToken",
• "collections.defaultdict",
• "__builtin__.dict",
• "torch.optim.adam.Adam",
• "torch.FloatStorage",
• "deepscreen.data.utils.collator.collate_fn",
• "transformers.models.bert.tokenization_bert.WordpieceTokenizer",
• "__builtin__.long",
• "deepscreen.data.featurizers.token.sequence_to_token_ids",
• "omegaconf.nodes.AnyNode",
• "__builtin__.set",
• "torch._utils._rebuild_tensor_v2",
• "omegaconf.dictconfig.DictConfig",
• "deepscreen.data.featurizers.token.BasicSmilesTokenizer",
• "deepscreen.data.featurizers.token.SmilesTokenizer",
• "deepscreen.data.utils.split.random_split",
• "re._compile",
• "torch._utils._rebuild_parameter",
• "transformers.tokenization_utils.Trie",
• "torch.LongStorage",
• "typing.Any",
• "collections.OrderedDict",
• "omegaconf.base.ContainerMetadata",
• "__builtin__.list",
• "omegaconf.listconfig.ListConfig"

How to fix it?

• "torch.LongStorage",
• "torch.FloatStorage",
• "omegaconf.base.ContainerMetadata",
• "deepscreen.data.featurizers.token.sequence_to_token_ids",
• "torch._utils._rebuild_parameter",
• "deepscreen.data.utils.collator.collate_fn",
• "deepscreen.data.utils.split.random_split",
• "collections.defaultdict",
• "omegaconf.dictconfig.DictConfig",
• "__builtin__.list",
• "torch.optim.adam.Adam",
• "re._compile",
• "transformers.models.bert.tokenization_bert.WordpieceTokenizer",
• "__builtin__.long",
• "torch.optim.lr_scheduler.ReduceLROnPlateau",
• "__builtin__.set",
• "tokenizers.AddedToken",
• "transformers.tokenization_utils.Trie",
• "omegaconf.nodes.AnyNode",
• "functools.partial",
• "omegaconf.base.Metadata",
• "typing.Any",
• "deepscreen.data.featurizers.token.SmilesTokenizer",
• "torch._utils._rebuild_tensor_v2",
• "deepscreen.data.featurizers.categorical.sequence_to_label",
• "collections.OrderedDict",
• "__builtin__.dict",
• "omegaconf.listconfig.ListConfig",
• "deepscreen.data.featurizers.token.BasicSmilesTokenizer"

How to fix it?

• "torch.optim.lr_scheduler.ReduceLROnPlateau",
• "omegaconf.base.Metadata",
• "deepscreen.data.featurizers.categorical.sequence_to_label",
• "functools.partial",
• "tokenizers.AddedToken",
• "collections.defaultdict",
• "__builtin__.dict",
• "torch.optim.adam.Adam",
• "torch.FloatStorage",
• "deepscreen.data.utils.collator.collate_fn",
• "transformers.models.bert.tokenization_bert.WordpieceTokenizer",
• "__builtin__.long",
• "deepscreen.data.featurizers.token.sequence_to_token_ids",
• "omegaconf.nodes.AnyNode",
• "__builtin__.set",
• "torch._utils._rebuild_tensor_v2",
• "omegaconf.dictconfig.DictConfig",
• "deepscreen.data.featurizers.token.BasicSmilesTokenizer",
• "deepscreen.data.featurizers.token.SmilesTokenizer",
• "deepscreen.data.utils.split.random_split",
• "re._compile",
• "torch._utils._rebuild_parameter",
• "transformers.tokenization_utils.Trie",
• "torch.LongStorage",
• "typing.Any",
• "collections.OrderedDict",
• "omegaconf.base.ContainerMetadata",
• "__builtin__.list",
• "omegaconf.listconfig.ListConfig"

How to fix it?

• "torch.optim.lr_scheduler.ReduceLROnPlateau",
• "typing.Any",
• "__builtin__.list",
• "transformers.tokenization_utils.Trie",
• "omegaconf.listconfig.ListConfig",
• "functools.partial",
• "deepscreen.data.utils.collator.collate_fn",
• "tokenizers.AddedToken",
• "omegaconf.base.ContainerMetadata",
• "__builtin__.set",
• "transformers.models.bert.tokenization_bert.WordpieceTokenizer",
• "deepscreen.data.featurizers.categorical.sequence_to_label",
• "deepscreen.data.featurizers.token.SmilesTokenizer",
• "torch._utils._rebuild_parameter",
• "__builtin__.dict",
• "omegaconf.dictconfig.DictConfig",
• "collections.OrderedDict",
• "re._compile",
• "collections.defaultdict",
• "torch.optim.adam.Adam",
• "omegaconf.nodes.AnyNode",
• "deepscreen.data.featurizers.token.BasicSmilesTokenizer",
• "deepscreen.data.featurizers.token.sequence_to_token_ids",
• "torch.FloatStorage",
• "deepscreen.data.utils.split.random_split",
• "torch.LongStorage",
• "torch._utils._rebuild_tensor_v2",
• "__builtin__.long",
• "omegaconf.base.Metadata"

How to fix it?

• "torch.optim.lr_scheduler.ReduceLROnPlateau",
• "typing.Any",
• "__builtin__.list",
• "transformers.tokenization_utils.Trie",
• "omegaconf.listconfig.ListConfig",
• "functools.partial",
• "deepscreen.data.utils.collator.collate_fn",
• "tokenizers.AddedToken",
• "omegaconf.base.ContainerMetadata",
• "__builtin__.set",
• "transformers.models.bert.tokenization_bert.WordpieceTokenizer",
• "deepscreen.data.featurizers.categorical.sequence_to_label",
• "deepscreen.data.featurizers.token.SmilesTokenizer",
• "torch._utils._rebuild_parameter",
• "__builtin__.dict",
• "omegaconf.dictconfig.DictConfig",
• "collections.OrderedDict",
• "re._compile",
• "collections.defaultdict",
• "torch.optim.adam.Adam",
• "omegaconf.nodes.AnyNode",
• "deepscreen.data.featurizers.token.BasicSmilesTokenizer",
• "deepscreen.data.featurizers.token.sequence_to_token_ids",
• "torch.FloatStorage",
• "deepscreen.data.utils.split.random_split",
• "torch.LongStorage",
• "torch._utils._rebuild_tensor_v2",
• "__builtin__.long",
• "omegaconf.base.Metadata"

How to fix it?