Commit History
Fix specification of sql_time_limit_ms
36e29bf
verified
Update Dockerfile set sql timeout to 3.5 s
273e715
Pass in working directory as arg to script
5aa6463
Nicky Nicolson
commited on
Modifications to allow use of DWCA format download
7f36417
Nicky Nicolson
commited on
Update README.md
561ae23
Update README.md
a82b811
Corrected spelling licence/license
a1cff5c
Nicky Nicolson
commited on
Added licence name
4d96b32
Nicky Nicolson
commited on
Fixed used of working dir when creating metadata json file
691c525
Nicky Nicolson
commited on
Correct script filename
2fa3172
Nicky Nicolson
commited on
Copy getDownloadMetadata.py to working dir
5717fee
Nicky Nicolson
commited on
Get download metadata from GBIF, write doi/licence to datasette metadata
16e5414
Nicky Nicolson
commited on
Removed unused sections
c3dab06
Nicky Nicolson
commited on
Made GBIF download ID a space variable
e4bd801
Nicky Nicolson
commited on
Use GBIF dowbload of all Solanum preserved specimens
01ef10a
Nicky Nicolson
commited on
Add jellyfish plugin
e675b11
Nicky Nicolson
commited on
Add clustermap
9bf9adb
Nicky Nicolson
commited on
Modified name parsing to use bionomia directly
2cc6a74
Nicky Nicolson
commited on
fix enable fts command
4d53d1c
Nicky Nicolson
commited on
Configure full text search
041b20c
Nicky Nicolson
commited on
Correct outputfile name
e0a2eea
Nicky Nicolson
commited on
Mod type spec for limit arg
90c51f5
Nicky Nicolson
commited on
Add limit arg and test install ruby gem for name parsing
cbab2c9
Nicky Nicolson
commited on
switch to smaller datafile
6e64108
Nicky Nicolson
commited on
add missing method def
7875bd2
Nicky Nicolson
commited on
mod argument specification
bc6bc45
Nicky Nicolson
commited on
MOved create cols into format conv script
424fd94
Nicky Nicolson
commited on
Copy script to working dir
0c0ffb8
Nicky Nicolson
commited on
Add step to extract collector name & create col for reconciliation
948faf7
Nicky Nicolson
commited on
Extract GBIF download ID to variable
7a26d32
Nicky Nicolson
commited on
fix outputfile (read from args)
80bafd5
Nicky Nicolson
commited on
skip bad lines
e57384a
Nicky Nicolson
commited on
Mod filename and generated DB table name
6d85436
Nicky Nicolson
commited on
Move script to workdir
2c1d107
Nicky Nicolson
commited on
conv tsv to csv before using sqllite utils
abf8c49
Nicky Nicolson
commited on
Trying to escape tab char
f2146ad
Nicky Nicolson
commited on
Implement GBIF specimen reconciliation
707e4f7
Nicky Nicolson
commited on
Specify tab delimiter
2ab0b63
Nicky Nicolson
commited on
Updated GBIF occurrence filename
18847ff
Nicky Nicolson
commited on
mod paths
afd2a60
Nicky Nicolson
commited on
Add ls
f3faa54
Nicky Nicolson
commited on
Bump pandas version
24bddd4
Nicky Nicolson
commited on
Add GBIF specimens
16660e8
Nicky Nicolson
commited on
Mod google drive link for downloading
65e9f20
Nicky Nicolson
commited on
Read DB from google drive, add reconciliation
7cc6ee0
Nicky Nicolson
commited on
Add sqllite-utils
054a467
Nicky Nicolson
commited on
Add datasette as requirement
edfdc0b
Nicky Nicolson
commited on
Add default metadata file
ad0837e
Nicky Nicolson
commited on
Added Dockerfile for vanilla datasette installation
5300c16
Nicky Nicolson
commited on