Add application files

app.py

@@ -20,7 +20,7 @@ def greet(name1, name2):
     
     with open('abstractsave.txt', 'w') as f:
         f.write(str4_input)
-    
+    '''
     def run_command(command):
         result = subprocess.run(command, shell=True, stdout=subprocess.PIPE, stderr=subprocess.PIPE, text=True)
 
@@ -34,7 +34,7 @@ def greet(name1, name2):
     output_string2, error_string2 = run_command(f"poetry run runoak set-apikey -e openai {str1_openai}")
     run_command(f"poetry run runoak set-apikey -e bioportal {str2_bioportal}")
     run_command(f"poetry run runoak set-apikey -e hfhub-key {str3_huggingface}")
-#     output = run_command(f"ontogpt extract -t gocam.GoCamAnnotations -i ./abstract.txt")
+#####     output = run_command(f"ontogpt extract -t gocam.GoCamAnnotations -i ./abstract.txt")
     output = run_command(f"cancerontogpt extract -t cancer.CancerAnnotations -i ./abstractsave.txt")
     
     output = output[0].replace('\\n', '\n')
@@ -50,8 +50,8 @@ def greet(name1, name2):
 
     # Output the extracted text
     output
-
-
+    '''
+    
 
 ####     output_string1, error_string1=run_command("poetry")# ontogpt")
 
@@ -61,14 +61,14 @@ def greet(name1, name2):
 #     return f"Inputs received: {str1} \n, {str2}, {str3}, {str4}, '--------------',   '--------------', {output_string1},{error_string1},{output_string2},{error_string2},{output}"
 #     #     return location
     # For the purpose of this example, I'm just returning the values concatenated
-    return f"{output}"
+    return f"{str4_input}"
 
 # Define 5 text input boxes with labels
 input_boxes = [
     gr.inputs.Textbox(label="openai api key"),
-    gr.inputs.Textbox(label="Input data"),
+    gr.inputs.Textbox(label="Input cencer report"),
 ]
 
-iface = gr.Interface(fn=greet, inputs=input_boxes, outputs="text")
+iface = gr.Interface(fn=greet, lines=20, inputs=input_boxes, outputs="text")
 iface.launch()