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--- |
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dataset_info: |
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features: |
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- name: id |
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dtype: string |
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- name: sequence |
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dtype: string |
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- name: name |
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dtype: string |
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- name: description |
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dtype: string |
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- name: features |
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dtype: int64 |
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- name: seq_length |
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dtype: int64 |
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splits: |
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- name: train |
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num_bytes: 6621468623 |
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num_examples: 2602437 |
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download_size: 2319826398 |
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dataset_size: 6621468623 |
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configs: |
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- config_name: default |
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data_files: |
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- split: train |
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path: data/train-* |
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--- |
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[Needs More Information] |
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# Dataset Card for virus_dna_dataset |
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## Table of Contents |
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- [Dataset Description](#dataset-description) |
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- [Dataset Summary](#dataset-summary) |
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- [Supported Tasks](#supported-tasks-and-leaderboards) |
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- [Languages](#languages) |
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- [Dataset Structure](#dataset-structure) |
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- [Data Instances](#data-instances) |
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- [Data Fields](#data-instances) |
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- [Data Splits](#data-instances) |
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- [Dataset Creation](#dataset-creation) |
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- [Curation Rationale](#curation-rationale) |
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- [Source Data](#source-data) |
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- [Annotations](#annotations) |
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- [Personal and Sensitive Information](#personal-and-sensitive-information) |
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- [Considerations for Using the Data](#considerations-for-using-the-data) |
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- [Social Impact of Dataset](#social-impact-of-dataset) |
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- [Discussion of Biases](#discussion-of-biases) |
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- [Other Known Limitations](#other-known-limitations) |
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- [Additional Information](#additional-information) |
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- [Dataset Curators](#dataset-curators) |
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- [Licensing Information](#licensing-information) |
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- [Citation Information](#citation-information) |
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## Dataset Description |
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- **Homepage:** [Needs More Information] |
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- **Repository:** [Needs More Information] |
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- **Paper:** [Needs More Information] |
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- **Leaderboard:** [Needs More Information] |
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- **Point of Contact:** [Needs More Information] |
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### Dataset Summary |
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A collection of full virus genome dna, the dataset was built from NCBI data |
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### Supported Tasks and Leaderboards |
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[Needs More Information] |
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### Languages |
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DNA |
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## Dataset Structure |
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### Data Instances |
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{ 'Description' : 'NC_030848.1 Haloarcula californiae icosahedral...', 'dna_sequence' : 'TCATCTC TCTCTCT CTCTCTT GTTCCCG CGCCCGC CCGCCC...', |
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'sequence_length':'35787', 'organism_id':' AB063393.2'} |
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### Data Fields |
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{ 'Description' : 'this contains the description about the DNA sequence contained in the NCBI dataset', 'dna_sequence' : 'this contains the dna sequence grouped by 7 nucleotides', |
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'sequence_length':'this contains the length of the dna sequence'} |
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### Data Splits |
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[Needs More Information] |
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## Dataset Creation |
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### Curation Rationale |
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The goal of this dataset was to make it easier to train an LLM on virus DNA |
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### Source Data |
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#### Initial Data Collection and Normalization |
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DNA sequences were grouped by 7 nucleotides to make it easier to tokenize. Only full genomes were selected |
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#### Who are the source language producers? |
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Viruses :) |
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### Annotations |
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#### Annotation process |
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NCBI |
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#### Who are the annotators? |
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NCBI |
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### Personal and Sensitive Information |
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N/A |
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## Considerations for Using the Data |
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### Social Impact of Dataset |
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Make it easier to train LLMs on virus DNA |
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### Discussion of Biases |
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Only virus data that has been sequenced and upload into NCBI is contained in here |
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### Other Known Limitations |
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[Needs More Information] |
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## Additional Information |
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### Dataset Curators |
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Hassan Ahmed |
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### Licensing Information |
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[Needs More Information] |
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### Citation Information |
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[Needs More Information] |
