license: cc-by-4.0
thumbnail: >-
https://github.com/user-attachments/assets/8ae905f3-6884-45cb-bd50-0838a5c8e3db
Caduceus Project Dataset
Creator: Kquant03
About the Dataset: The Caduceus Project Dataset is a curated collection of scientific and medical protocols sourced from protocols.io and converted from PDF to markdown format. This dataset aims to enhance the accessibility and usability of complex scientific and medical information by providing a structured and easily readable version of the protocols. You can find the repository for the pipeline here.
Source Data:
- Protocols from protocols.io
Key Features:
- Carefully selected high-quality protocols
- Converted from PDF to markdown format for improved readability
- Structured organization with individual markdown files and a JSONL file
- Quality assessment based on word count and measurements ratio
- Density maps visualizing word counts and measurements ratios
Dataset Structure:
original_pdfs/: Contains the original PDF files of the selected protocols.markdown_files/: Contains the individual markdown files converted from the selected PDF files.TXT.jsonl/: Contains the JSONL files with the text versions of the PDFs and the converted markdown content of all the selected protocols.Base64.jsonl/: Contains the JSONL files with the Base64 versions of the PDFs and the converted markdown content of all the selected protocols. (for potential vision training)
License: The Caduceus Project Dataset is released under the Creative Commons Attribution 4.0 International (CC BY 4.0) License.
Acknowledgments: We would like to express our gratitude to the contributors of protocols.io for providing the open-source repository of scientific and medical protocols that served as the foundation for this dataset.