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license: cc-by-4.0 |
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thumbnail: "https://github.com/user-attachments/assets/8ae905f3-6884-45cb-bd50-0838a5c8e3db" |
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</head> |
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<body> |
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<div class="container"> |
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<div class="header"> |
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<h1>Caduceus Project Dataset</h1> |
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</div> |
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<div class="info"> |
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<img src="https://cdn-uploads.huggingface.co/production/uploads/6589d7e6586088fd2784a12c/SdR5VbJNxeHl3bG0yGSba.png" alt="Caduceus Project" style="border-radius: 10px;"> |
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<p><strong>Creator:</strong> <a href="https://github.com/Kquant03" target="_blank">Kquant03</a></p> |
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<div> |
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<p><strong>About the Dataset:</strong> The Caduceus Project Dataset is a curated collection of scientific and medical protocols sourced from <a href="https://github.com/protocolsio/protocols" target="_blank">protocols.io</a> and converted from PDF to markdown format. This dataset aims to enhance the accessibility and usability of complex scientific and medical information by providing a structured and easily readable version of the protocols. You can find the repository for the pipeline <a href="https://github.com/Kquant03/caduceus" target="_blank">here</a>.</p> |
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<p><strong>Source Data:</strong></p> |
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<ul> |
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<li>Protocols from <a href="https://github.com/protocolsio/protocols" target="_blank">protocols.io</a></li> |
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</ul> |
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<p><strong>Key Features:</strong></p> |
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<ul> |
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<li>Carefully selected high-quality protocols</li> |
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<li>Converted from PDF to markdown format for improved readability</li> |
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<li>Structured organization with individual markdown files and a JSONL file</li> |
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<li>Quality assessment based on word count and measurements ratio</li> |
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<li>Density maps visualizing word counts and measurements ratios</li> |
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</ul> |
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<p><strong>Dataset Structure:</strong></p> |
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<ul> |
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<li><code>original_pdfs/</code>: Contains the original PDF files of the selected protocols.</li> |
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<li><code>markdown_files/</code>: Contains the individual markdown files converted from the selected PDF files.</li> |
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<li><code>TXT.jsonl/</code>: Contains the JSONL files with the text versions of the PDFs and the converted markdown content of all the selected protocols.</li> |
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<li><code>Base64.jsonl/</code>: Contains the JSONL files with the Base64 versions of the PDFs and the converted markdown content of all the selected protocols. (for potential vision training)</li> |
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</ul> |
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<p><strong>License:</strong> The Caduceus Project Dataset is released under the <a href="https://creativecommons.org/licenses/by/4.0/" target="_blank">Creative Commons Attribution 4.0 International (CC BY 4.0) License</a>.</p> |
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<p><strong>Acknowledgments:</strong> We would like to express our gratitude to the contributors of <a href="https://github.com/protocolsio/protocols" target="_blank">protocols.io</a> for providing the open-source repository of scientific and medical protocols that served as the foundation for this dataset.</p> |
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