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{'id': '128', 'type': 'list_comprehension', 'children': ['129', '145']}, {'id': '129', 'type': 'call', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'get_dummy_thread'}, {'id': '131', 'type': 'argument_list', 'children': ['132', '133', '136', '139', '142']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'nsamples'}, {'id': '133', 'type': 'keyword_argument', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'ndim'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'ndim'}; {'id': '136', 'type': 'keyword_argument', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'seed'}; {'id': '138', 'type': 'False', 'children': []}, {'id': '139', 'type': 'keyword_argument', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'logl_start'}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'start'}; {'id': '142', 'type': 'keyword_argument', 'children': ['143', '144']}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'logl_range'}; 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{'id': '176', 'type': 'attribute', 'children': ['177', '178']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'nestcheck'}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'ns_run_utils'}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'combine_threads'}; {'id': '180', 'type': 'argument_list', 'children': ['181']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'threads'}; {'id': '182', 'type': 'expression_statement', 'children': ['183']}, {'id': '183', 'type': 'assignment', 'children': ['184', '185']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'samples'}, {'id': '185', 'type': 'call', 'children': ['186', '191']}; {'id': '186', 'type': 'attribute', 'children': ['187', '190']}, {'id': '187', 'type': 'attribute', 'children': ['188', '189']}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'nestcheck'}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'write_polychord_output'}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'run_dead_birth_array'}, {'id': '191', 'type': 'argument_list', 'children': ['192']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'run'}, {'id': '193', 'type': 'return_statement', 'children': ['194']}; {'id': '194', 'type': 'call', 'children': ['195', '200']}, {'id': '195', 'type': 'attribute', 'children': ['196', '199']}; {'id': '196', 'type': 'attribute', 'children': ['197', '198']}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'nestcheck'}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'data_processing'}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'process_samples_array'}; {'id': '200', 'type': 'argument_list', 'children': ['201']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'samples'} | def get_dummy_dynamic_run(nsamples, **kwargs):
seed = kwargs.pop('seed', False)
ndim = kwargs.pop('ndim', 2)
nthread_init = kwargs.pop('nthread_init', 2)
nthread_dyn = kwargs.pop('nthread_dyn', 3)
logl_range = kwargs.pop('logl_range', 1)
if kwargs:
raise TypeError('Unexpected **kwargs: {0}'.format(kwargs))
init = get_dummy_run(nthread_init, nsamples, ndim=ndim, seed=seed,
logl_start=-np.inf, logl_range=logl_range)
dyn_starts = list(np.random.choice(
init['logl'], nthread_dyn, replace=True))
threads = nestcheck.ns_run_utils.get_run_threads(init)
threads += [get_dummy_thread(
nsamples, ndim=ndim, seed=False, logl_start=start,
logl_range=logl_range) for start in dyn_starts]
for i, _ in enumerate(threads):
threads[i]['thread_labels'] = np.full(nsamples, i)
run = nestcheck.ns_run_utils.combine_threads(threads)
samples = nestcheck.write_polychord_output.run_dead_birth_array(run)
return nestcheck.data_processing.process_samples_array(samples) |
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{'id': '64', 'type': 'if_statement', 'children': ['65', '68']}, {'id': '65', 'type': 'comparison_operator', 'children': ['66', '67'], 'value': 'is'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'm'}, {'id': '67', 'type': 'None', 'children': []}; {'id': '68', 'type': 'block', 'children': ['69']}, {'id': '69', 'type': 'continue_statement', 'children': []}; {'id': '70', 'type': 'expression_statement', 'children': ['71']}, {'id': '71', 'type': 'call', 'children': ['72', '75']}; {'id': '72', 'type': 'attribute', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'all_dates'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '75', 'type': 'argument_list', 'children': ['76']}; {'id': '76', 'type': 'call', 'children': ['77', '80']}, {'id': '77', 'type': 'attribute', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'datetime'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'strptime'}; {'id': '80', 'type': 'argument_list', 'children': ['81', '87']}, {'id': '81', 'type': 'call', 'children': ['82', '85']}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'm'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'group'}, {'id': '85', 'type': 'argument_list', 'children': ['86']}; {'id': '86', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '87', 'type': 'string', 'children': [], 'value': "'%Y%m%d'"}; {'id': '88', 'type': 'return_statement', 'children': ['89']}, {'id': '89', 'type': 'call', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '91', 'type': 'argument_list', 'children': ['92']} | def get_dates_for_project(self, project):
file_re = re.compile(r'^%s_([0-9]{8})\.json$' % project)
all_dates = []
for f in os.listdir(self.cache_path):
if not os.path.isfile(os.path.join(self.cache_path, f)):
continue
m = file_re.match(f)
if m is None:
continue
all_dates.append(datetime.strptime(m.group(1), '%Y%m%d'))
return sorted(all_dates) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'insort_event_right'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'lo'}; {'id': '8', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'hi'}, {'id': '11', 'type': 'None', 'children': []}; {'id': '12', 'type': 'block', 'children': ['13', '23', '37', '76']}, {'id': '13', 'type': 'if_statement', 'children': ['14', '17']}; {'id': '14', 'type': 'comparison_operator', 'children': ['15', '16'], 'value': '<'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'lo'}; {'id': '16', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '17', 'type': 'block', 'children': ['18']}; {'id': '18', 'type': 'raise_statement', 'children': ['19']}, {'id': '19', 'type': 'call', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '21', 'type': 'argument_list', 'children': ['22']}; {'id': '22', 'type': 'string', 'children': [], 'value': "'lo must be non-negative'"}, {'id': '23', 'type': 'if_statement', 'children': ['24', '27']}; {'id': '24', 'type': 'comparison_operator', 'children': ['25', '26'], 'value': 'is'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'hi'}; {'id': '26', 'type': 'None', 'children': []}, {'id': '27', 'type': 'block', 'children': ['28']}; {'id': '28', 'type': 'expression_statement', 'children': ['29']}, {'id': '29', 'type': 'assignment', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'hi'}, {'id': '31', 'type': 'call', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '33', 'type': 'argument_list', 'children': ['34']}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'queue'}, {'id': '37', 'type': 'while_statement', 'children': ['38', '41']}; {'id': '38', 'type': 'comparison_operator', 'children': ['39', '40'], 'value': '<'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'lo'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'hi'}, {'id': '41', 'type': 'block', 'children': ['42', '51']}; {'id': '42', 'type': 'expression_statement', 'children': ['43']}, {'id': '43', 'type': 'assignment', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'mid'}, {'id': '45', 'type': 'binary_operator', 'children': ['46', '50'], 'value': '//'}; {'id': '46', 'type': 'parenthesized_expression', 'children': ['47']}, {'id': '47', 'type': 'binary_operator', 'children': ['48', '49'], 'value': '+'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'lo'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'hi'}; {'id': '50', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '51', 'type': 'if_statement', 'children': ['52', '63', '68']}; {'id': '52', 'type': 'comparison_operator', 'children': ['53', '56'], 'value': '<'}, {'id': '53', 'type': 'subscript', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'event'}, {'id': '55', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '56', 'type': 'subscript', 'children': ['57', '62']}, {'id': '57', 'type': 'subscript', 'children': ['58', '61']}; {'id': '58', 'type': 'attribute', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'queue'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'mid'}; {'id': '62', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '63', 'type': 'block', 'children': ['64']}; {'id': '64', 'type': 'expression_statement', 'children': ['65']}, {'id': '65', 'type': 'assignment', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'hi'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'mid'}; {'id': '68', 'type': 'else_clause', 'children': ['69']}, {'id': '69', 'type': 'block', 'children': ['70']}; {'id': '70', 'type': 'expression_statement', 'children': ['71']}, {'id': '71', 'type': 'assignment', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'lo'}, {'id': '73', 'type': 'binary_operator', 'children': ['74', '75'], 'value': '+'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'mid'}, {'id': '75', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '76', 'type': 'expression_statement', 'children': ['77']}, {'id': '77', 'type': 'call', 'children': ['78', '83']}; {'id': '78', 'type': 'attribute', 'children': ['79', '82']}, {'id': '79', 'type': 'attribute', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'queue'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'insert'}, {'id': '83', 'type': 'argument_list', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'lo'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'event'} | def insort_event_right(self, event, lo=0, hi=None):
if lo < 0:
raise ValueError('lo must be non-negative')
if hi is None:
hi = len(self.queue)
while lo < hi:
mid = (lo + hi) // 2
if event[0] < self.queue[mid][0]:
hi = mid
else:
lo = mid + 1
self.queue.insert(lo, event) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'getMd5Checksum'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '27', '44', '57']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'references'}, {'id': '9', 'type': 'call', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '11', 'type': 'argument_list', 'children': ['12', '17']}; {'id': '12', 'type': 'call', 'children': ['13', '16']}, {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'getReferences'}; {'id': '16', 'type': 'argument_list', 'children': []}, {'id': '17', 'type': 'keyword_argument', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '19', 'type': 'lambda', 'children': ['20', '22']}; {'id': '20', 'type': 'lambda_parameters', 'children': ['21']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'ref'}; {'id': '22', 'type': 'call', 'children': ['23', '26']}, {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'ref'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'getMd5Checksum'}; {'id': '26', 'type': 'argument_list', 'children': []}, {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'assignment', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'checksums'}; {'id': '30', 'type': 'call', 'children': ['31', '34']}, {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'string', 'children': [], 'value': "''"}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '34', 'type': 'argument_list', 'children': ['35']}, {'id': '35', 'type': 'list_comprehension', 'children': ['36', '41']}; {'id': '36', 'type': 'call', 'children': ['37', '40']}, {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'ref'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'getMd5Checksum'}; {'id': '40', 'type': 'argument_list', 'children': []}, {'id': '41', 'type': 'for_in_clause', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'ref'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'references'}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}, {'id': '45', 'type': 'assignment', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'md5checksum'}, {'id': '47', 'type': 'call', 'children': ['48', '56']}; {'id': '48', 'type': 'attribute', 'children': ['49', '55']}, {'id': '49', 'type': 'call', 'children': ['50', '53']}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'hashlib'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'md5'}, {'id': '53', 'type': 'argument_list', 'children': ['54']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'checksums'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'hexdigest'}; {'id': '56', 'type': 'argument_list', 'children': []}, {'id': '57', 'type': 'return_statement', 'children': ['58']} | def getMd5Checksum(self):
references = sorted(
self.getReferences(),
key=lambda ref: ref.getMd5Checksum())
checksums = ''.join([ref.getMd5Checksum() for ref in references])
md5checksum = hashlib.md5(checksums).hexdigest()
return md5checksum |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '13']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'knn_impute_few_observed'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '10']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'X'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'missing_mask'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'verbose'}, {'id': '9', 'type': 'False', 'children': []}; {'id': '10', 'type': 'default_parameter', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'print_interval'}; {'id': '12', 'type': 'integer', 'children': [], 'value': '100'}, {'id': '13', 'type': 'block', 'children': ['14', '22', '30', '42', '47', '58', '73', '85', '91', '97', '108', '126', '132', '281']}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}, {'id': '15', 'type': 'assignment', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'start_t'}, {'id': '17', 'type': 'call', 'children': ['18', '21']}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'time'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'time'}, {'id': '21', 'type': 'argument_list', 'children': []}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}, {'id': '23', 'type': 'assignment', 'children': ['24', '27']}; {'id': '24', 'type': 'pattern_list', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'n_rows'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'n_cols'}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'X'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'shape'}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}, {'id': '31', 'type': 'assignment', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'missing_mask_column_major'}, {'id': '33', 'type': 'call', 'children': ['34', '37']}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'asarray'}, {'id': '37', 'type': 'argument_list', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'missing_mask'}, {'id': '39', 'type': 'keyword_argument', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'order'}, {'id': '41', 'type': 'string', 'children': [], 'value': '"F"'}; {'id': '42', 'type': 'expression_statement', 'children': ['43']}, {'id': '43', 'type': 'assignment', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'observed_mask_column_major'}, {'id': '45', 'type': 'unary_operator', 'children': ['46'], 'value': '~'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'missing_mask_column_major'}, {'id': '47', 'type': 'expression_statement', 'children': ['48']}; {'id': '48', 'type': 'assignment', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'X_column_major'}; {'id': '50', 'type': 'call', 'children': ['51', '54']}, {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'X'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'copy'}; {'id': '54', 'type': 'argument_list', 'children': ['55']}, {'id': '55', 'type': 'keyword_argument', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'order'}, {'id': '57', 'type': 'string', 'children': [], 'value': '"F"'}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}, {'id': '59', 'type': 'assignment', 'children': ['60', '64', '65']}; {'id': '60', 'type': 'pattern_list', 'children': ['61', '62', '63']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'X_row_major'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'D'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'effective_infinity'}; {'id': '64', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '65', 'type': 'call', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'knn_initialize'}, {'id': '67', 'type': 'argument_list', 'children': ['68', '69', '70']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'X'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'missing_mask'}; {'id': '70', 'type': 'keyword_argument', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'verbose'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'verbose'}, {'id': '73', 'type': 'expression_statement', 'children': ['74']}; {'id': '74', 'type': 'assignment', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'D_sorted'}; {'id': '76', 'type': 'call', 'children': ['77', '80']}, {'id': '77', 'type': 'attribute', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'argsort'}; {'id': '80', 'type': 'argument_list', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'D'}; {'id': '82', 'type': 'keyword_argument', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'axis'}; {'id': '84', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '85', 'type': 'expression_statement', 'children': ['86']}; {'id': '86', 'type': 'assignment', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'inv_D'}; {'id': '88', 'type': 'binary_operator', 'children': ['89', '90'], 'value': '/'}, {'id': '89', 'type': 'float', 'children': [], 'value': '1.0'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'D'}, {'id': '91', 'type': 'expression_statement', 'children': ['92']}; {'id': '92', 'type': 'assignment', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'D_valid_mask'}; {'id': '94', 'type': 'comparison_operator', 'children': ['95', '96'], 'value': '<'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'D'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'effective_infinity'}, {'id': '97', 'type': 'expression_statement', 'children': ['98']}; {'id': '98', 'type': 'assignment', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'valid_distances_per_row'}; {'id': '100', 'type': 'call', 'children': ['101', '104']}, {'id': '101', 'type': 'attribute', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'D_valid_mask'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'sum'}; {'id': '104', 'type': 'argument_list', 'children': ['105']}, {'id': '105', 'type': 'keyword_argument', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'axis'}, {'id': '107', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '108', 'type': 'expression_statement', 'children': ['109']}, {'id': '109', 'type': 'assignment', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'D_sorted'}, {'id': '111', 'type': 'list_comprehension', 'children': ['112', '118']}; {'id': '112', 'type': 'subscript', 'children': ['113', '114', '115']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'D_sorted'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '115', 'type': 'slice', 'children': ['116', '117']}; {'id': '116', 'type': 'colon', 'children': []}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'count'}; {'id': '118', 'type': 'for_in_clause', 'children': ['119', '122']}, {'id': '119', 'type': 'pattern_list', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'count'}; {'id': '122', 'type': 'call', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'enumerate'}; {'id': '124', 'type': 'argument_list', 'children': ['125']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'valid_distances_per_row'}; {'id': '126', 'type': 'expression_statement', 'children': ['127']}, {'id': '127', 'type': 'assignment', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'dot'}, {'id': '129', 'type': 'attribute', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'dot'}; {'id': '132', 'type': 'for_statement', 'children': ['133', '134', '138']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '134', 'type': 'call', 'children': ['135', '136']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '136', 'type': 'argument_list', 'children': ['137']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'n_rows'}; {'id': '138', 'type': 'block', 'children': ['139', '147', '158', '166', '197', '203']}, {'id': '139', 'type': 'expression_statement', 'children': ['140']}; {'id': '140', 'type': 'assignment', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'missing_row'}; {'id': '142', 'type': 'subscript', 'children': ['143', '144', '145']}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'missing_mask'}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '145', 'type': 'slice', 'children': ['146']}; {'id': '146', 'type': 'colon', 'children': []}, {'id': '147', 'type': 'expression_statement', 'children': ['148']}; {'id': '148', 'type': 'assignment', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'missing_indices'}; {'id': '150', 'type': 'subscript', 'children': ['151', '157']}, {'id': '151', 'type': 'call', 'children': ['152', '155']}; {'id': '152', 'type': 'attribute', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'where'}, {'id': '155', 'type': 'argument_list', 'children': ['156']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'missing_row'}, {'id': '157', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '158', 'type': 'expression_statement', 'children': ['159']}, {'id': '159', 'type': 'assignment', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'row_weights'}, {'id': '161', 'type': 'subscript', 'children': ['162', '163', '164']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'inv_D'}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '164', 'type': 'slice', 'children': ['165']}, {'id': '165', 'type': 'colon', 'children': []}; {'id': '166', 'type': 'if_statement', 'children': ['167', '174']}, {'id': '167', 'type': 'boolean_operator', 'children': ['168', '169'], 'value': 'and'}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'verbose'}, {'id': '169', 'type': 'comparison_operator', 'children': ['170', '173'], 'value': '=='}; {'id': '170', 'type': 'binary_operator', 'children': ['171', '172'], 'value': '%'}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'print_interval'}, {'id': '173', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '174', 'type': 'block', 'children': ['175']}, {'id': '175', 'type': 'expression_statement', 'children': ['176']}; {'id': '176', 'type': 'call', 'children': ['177', '178']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '178', 'type': 'argument_list', 'children': ['179']}, {'id': '179', 'type': 'binary_operator', 'children': ['180', '181'], 'value': '%'}; {'id': '180', 'type': 'string', 'children': [], 'value': '"Imputing row %d/%d with %d missing, elapsed time: %0.3f"'}, {'id': '181', 'type': 'tuple', 'children': ['182', '185', '186', '190']}; {'id': '182', 'type': 'binary_operator', 'children': ['183', '184'], 'value': '+'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '184', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'n_rows'}; {'id': '186', 'type': 'call', 'children': ['187', '188']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '188', 'type': 'argument_list', 'children': ['189']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'missing_indices'}; {'id': '190', 'type': 'binary_operator', 'children': ['191', '196'], 'value': '-'}, {'id': '191', 'type': 'call', 'children': ['192', '195']}; {'id': '192', 'type': 'attribute', 'children': ['193', '194']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'time'}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'time'}, {'id': '195', 'type': 'argument_list', 'children': []}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'start_t'}, {'id': '197', 'type': 'expression_statement', 'children': ['198']}; {'id': '198', 'type': 'assignment', 'children': ['199', '200']}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'candidate_neighbor_indices'}; {'id': '200', 'type': 'subscript', 'children': ['201', '202']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'D_sorted'}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '203', 'type': 'for_statement', 'children': ['204', '205', '206']}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'j'}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'missing_indices'}; {'id': '206', 'type': 'block', 'children': ['207', '215', '221', '227', '235', '241', '249']}, {'id': '207', 'type': 'expression_statement', 'children': ['208']}; {'id': '208', 'type': 'assignment', 'children': ['209', '210']}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'observed'}; {'id': '210', 'type': 'subscript', 'children': ['211', '212', '214']}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'observed_mask_column_major'}; {'id': '212', 'type': 'slice', 'children': ['213']}, {'id': '213', 'type': 'colon', 'children': []}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'j'}, {'id': '215', 'type': 'expression_statement', 'children': ['216']}; {'id': '216', 'type': 'assignment', 'children': ['217', '218']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'sorted_observed'}; {'id': '218', 'type': 'subscript', 'children': ['219', '220']}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'observed'}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'candidate_neighbor_indices'}, {'id': '221', 'type': 'expression_statement', 'children': ['222']}; {'id': '222', 'type': 'assignment', 'children': ['223', '224']}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'observed_neighbor_indices'}; {'id': '224', 'type': 'subscript', 'children': ['225', '226']}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'candidate_neighbor_indices'}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'sorted_observed'}, {'id': '227', 'type': 'expression_statement', 'children': ['228']}; {'id': '228', 'type': 'assignment', 'children': ['229', '230']}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'k_nearest_indices'}; {'id': '230', 'type': 'subscript', 'children': ['231', '232']}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'observed_neighbor_indices'}; {'id': '232', 'type': 'slice', 'children': ['233', '234']}, {'id': '233', 'type': 'colon', 'children': []}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '235', 'type': 'expression_statement', 'children': ['236']}; {'id': '236', 'type': 'assignment', 'children': ['237', '238']}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'weights'}; {'id': '238', 'type': 'subscript', 'children': ['239', '240']}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'row_weights'}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'k_nearest_indices'}, {'id': '241', 'type': 'expression_statement', 'children': ['242']}; {'id': '242', 'type': 'assignment', 'children': ['243', '244']}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'weight_sum'}; {'id': '244', 'type': 'call', 'children': ['245', '248']}, {'id': '245', 'type': 'attribute', 'children': ['246', '247']}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'weights'}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'sum'}; {'id': '248', 'type': 'argument_list', 'children': []}, {'id': '249', 'type': 'if_statement', 'children': ['250', '253']}; {'id': '250', 'type': 'comparison_operator', 'children': ['251', '252'], 'value': '>'}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'weight_sum'}; {'id': '252', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '253', 'type': 'block', 'children': ['254', '262', '268']}; {'id': '254', 'type': 'expression_statement', 'children': ['255']}, {'id': '255', 'type': 'assignment', 'children': ['256', '257']}; {'id': '256', 'type': 'identifier', 'children': [], 'value': 'column'}, {'id': '257', 'type': 'subscript', 'children': ['258', '259', '261']}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'X_column_major'}, {'id': '259', 'type': 'slice', 'children': ['260']}; {'id': '260', 'type': 'colon', 'children': []}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '262', 'type': 'expression_statement', 'children': ['263']}, {'id': '263', 'type': 'assignment', 'children': ['264', '265']}; {'id': '264', 'type': 'identifier', 'children': [], 'value': 'values'}, {'id': '265', 'type': 'subscript', 'children': ['266', '267']}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'column'}, {'id': '267', 'type': 'identifier', 'children': [], 'value': 'k_nearest_indices'}; {'id': '268', 'type': 'expression_statement', 'children': ['269']}, {'id': '269', 'type': 'assignment', 'children': ['270', '274']}; {'id': '270', 'type': 'subscript', 'children': ['271', '272', '273']}, {'id': '271', 'type': 'identifier', 'children': [], 'value': 'X_row_major'}; {'id': '272', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '273', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '274', 'type': 'binary_operator', 'children': ['275', '280'], 'value': '/'}, {'id': '275', 'type': 'call', 'children': ['276', '277']}; {'id': '276', 'type': 'identifier', 'children': [], 'value': 'dot'}, {'id': '277', 'type': 'argument_list', 'children': ['278', '279']}; {'id': '278', 'type': 'identifier', 'children': [], 'value': 'values'}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'weights'}; {'id': '280', 'type': 'identifier', 'children': [], 'value': 'weight_sum'}, {'id': '281', 'type': 'return_statement', 'children': ['282']} | def knn_impute_few_observed(
X, missing_mask, k, verbose=False, print_interval=100):
start_t = time.time()
n_rows, n_cols = X.shape
missing_mask_column_major = np.asarray(missing_mask, order="F")
observed_mask_column_major = ~missing_mask_column_major
X_column_major = X.copy(order="F")
X_row_major, D, effective_infinity = \
knn_initialize(X, missing_mask, verbose=verbose)
D_sorted = np.argsort(D, axis=1)
inv_D = 1.0 / D
D_valid_mask = D < effective_infinity
valid_distances_per_row = D_valid_mask.sum(axis=1)
D_sorted = [
D_sorted[i, :count]
for i, count in enumerate(valid_distances_per_row)
]
dot = np.dot
for i in range(n_rows):
missing_row = missing_mask[i, :]
missing_indices = np.where(missing_row)[0]
row_weights = inv_D[i, :]
if verbose and i % print_interval == 0:
print(
"Imputing row %d/%d with %d missing, elapsed time: %0.3f" % (
i + 1,
n_rows,
len(missing_indices),
time.time() - start_t))
candidate_neighbor_indices = D_sorted[i]
for j in missing_indices:
observed = observed_mask_column_major[:, j]
sorted_observed = observed[candidate_neighbor_indices]
observed_neighbor_indices = candidate_neighbor_indices[sorted_observed]
k_nearest_indices = observed_neighbor_indices[:k]
weights = row_weights[k_nearest_indices]
weight_sum = weights.sum()
if weight_sum > 0:
column = X_column_major[:, j]
values = column[k_nearest_indices]
X_row_major[i, j] = dot(values, weights) / weight_sum
return X_row_major |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_sort_converters'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'app_ready'}, {'id': '7', 'type': 'False', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9', '11', '21']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'string', 'children': [], 'value': "'''Sorts the converter functions'''"}, {'id': '11', 'type': 'expression_statement', 'children': ['12']}; {'id': '12', 'type': 'assignment', 'children': ['13', '16']}, {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': '_sorting_enabled'}; {'id': '16', 'type': 'boolean_operator', 'children': ['17', '20'], 'value': 'or'}, {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': '_sorting_enabled'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'app_ready'}, {'id': '21', 'type': 'if_statement', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': '_sorting_enabled'}, {'id': '25', 'type': 'block', 'children': ['26', '38']}; {'id': '26', 'type': 'for_statement', 'children': ['27', '28', '31']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'converter'}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'converters'}, {'id': '31', 'type': 'block', 'children': ['32']}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}, {'id': '33', 'type': 'call', 'children': ['34', '37']}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'converter'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'prepare_sort_key'}, {'id': '37', 'type': 'argument_list', 'children': []}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}, {'id': '39', 'type': 'call', 'children': ['40', '45']}; {'id': '40', 'type': 'attribute', 'children': ['41', '44']}, {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'converters'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '45', 'type': 'argument_list', 'children': ['46']}; {'id': '46', 'type': 'keyword_argument', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '48', 'type': 'call', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'attrgetter'}; {'id': '50', 'type': 'argument_list', 'children': ['51']}, {'id': '51', 'type': 'string', 'children': [], 'value': "'sort_key'"} | def _sort_converters(cls, app_ready=False):
'''Sorts the converter functions'''
cls._sorting_enabled = cls._sorting_enabled or app_ready
if cls._sorting_enabled:
for converter in cls.converters:
converter.prepare_sort_key()
cls.converters.sort(key=attrgetter('sort_key')) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'prepare_sort_key'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '8', '80']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'string', 'children': [], 'value': "'''\n Triggered by view_function._sort_converters when our sort key should be created.\n This can't be called in the constructor because Django models might not be ready yet.\n '''"}; {'id': '8', 'type': 'if_statement', 'children': ['9', '16']}, {'id': '9', 'type': 'call', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '11', 'type': 'argument_list', 'children': ['12', '15']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'convert_type'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '16', 'type': 'block', 'children': ['17', '47']}, {'id': '17', 'type': 'try_statement', 'children': ['18', '32']}; {'id': '18', 'type': 'block', 'children': ['19']}, {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '24']}, {'id': '21', 'type': 'pattern_list', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'app_name'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'model_name'}; {'id': '24', 'type': 'call', 'children': ['25', '30']}, {'id': '25', 'type': 'attribute', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'convert_type'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'split'}; {'id': '30', 'type': 'argument_list', 'children': ['31']}, {'id': '31', 'type': 'string', 'children': [], 'value': "'.'"}; {'id': '32', 'type': 'except_clause', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '34', 'type': 'block', 'children': ['35']}, {'id': '35', 'type': 'raise_statement', 'children': ['36']}; {'id': '36', 'type': 'call', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'ImproperlyConfigured'}; {'id': '38', 'type': 'argument_list', 'children': ['39']}, {'id': '39', 'type': 'call', 'children': ['40', '43']}; {'id': '40', 'type': 'attribute', 'children': ['41', '42']}, {'id': '41', 'type': 'string', 'children': [], 'value': '\'"{}" is not a valid converter type. String-based converter types must be specified in "app.Model" format.\''}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '43', 'type': 'argument_list', 'children': ['44']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'convert_type'}, {'id': '47', 'type': 'try_statement', 'children': ['48', '61']}; {'id': '48', 'type': 'block', 'children': ['49']}, {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'assignment', 'children': ['51', '54']}, {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'convert_type'}; {'id': '54', 'type': 'call', 'children': ['55', '58']}, {'id': '55', 'type': 'attribute', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'apps'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'get_model'}; {'id': '58', 'type': 'argument_list', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'app_name'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'model_name'}, {'id': '61', 'type': 'except_clause', 'children': ['62', '66']}; {'id': '62', 'type': 'as_pattern', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'LookupError'}; {'id': '64', 'type': 'as_pattern_target', 'children': ['65']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '66', 'type': 'block', 'children': ['67']}, {'id': '67', 'type': 'raise_statement', 'children': ['68']}; {'id': '68', 'type': 'call', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'ImproperlyConfigured'}; {'id': '70', 'type': 'argument_list', 'children': ['71']}, {'id': '71', 'type': 'call', 'children': ['72', '75']}; {'id': '72', 'type': 'attribute', 'children': ['73', '74']}, {'id': '73', 'type': 'string', 'children': [], 'value': '\'"{}" is not a valid model name. {}\''}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '75', 'type': 'argument_list', 'children': ['76', '79']}; {'id': '76', 'type': 'attribute', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'convert_type'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '80', 'type': 'expression_statement', 'children': ['81']}, {'id': '81', 'type': 'assignment', 'children': ['82', '85']}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'sort_key'}, {'id': '85', 'type': 'tuple', 'children': ['86', '100']}; {'id': '86', 'type': 'binary_operator', 'children': ['87', '89'], 'value': '*'}, {'id': '87', 'type': 'unary_operator', 'children': ['88'], 'value': '-'}; {'id': '88', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '89', 'type': 'call', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '91', 'type': 'argument_list', 'children': ['92']}; {'id': '92', 'type': 'call', 'children': ['93', '96']}, {'id': '93', 'type': 'attribute', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'inspect'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'getmro'}; {'id': '96', 'type': 'argument_list', 'children': ['97']}, {'id': '97', 'type': 'attribute', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'convert_type'}; {'id': '100', 'type': 'binary_operator', 'children': ['101', '103'], 'value': '*'}, {'id': '101', 'type': 'unary_operator', 'children': ['102'], 'value': '-'}; {'id': '102', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '103', 'type': 'attribute', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'source_order'} | def prepare_sort_key(self):
'''
Triggered by view_function._sort_converters when our sort key should be created.
This can't be called in the constructor because Django models might not be ready yet.
'''
if isinstance(self.convert_type, str):
try:
app_name, model_name = self.convert_type.split('.')
except ValueError:
raise ImproperlyConfigured('"{}" is not a valid converter type. String-based converter types must be specified in "app.Model" format.'.format(self.convert_type))
try:
self.convert_type = apps.get_model(app_name, model_name)
except LookupError as e:
raise ImproperlyConfigured('"{}" is not a valid model name. {}'.format(self.convert_type, e))
self.sort_key = ( -1 * len(inspect.getmro(self.convert_type)), -1 * self.source_order ) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_key_for_numeric_suffixes'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'sep'}, {'id': '7', 'type': 'string', 'children': [], 'value': "'.'"}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'suffix_index'}; {'id': '10', 'type': 'unary_operator', 'children': ['11'], 'value': '-'}, {'id': '11', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '12', 'type': 'block', 'children': ['13', '22', '57']}, {'id': '13', 'type': 'expression_statement', 'children': ['14']}; {'id': '14', 'type': 'assignment', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'chunks'}; {'id': '16', 'type': 'call', 'children': ['17', '20']}, {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'split'}; {'id': '20', 'type': 'argument_list', 'children': ['21']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'sep'}; {'id': '22', 'type': 'if_statement', 'children': ['23', '30']}, {'id': '23', 'type': 'call', 'children': ['24', '29']}; {'id': '24', 'type': 'attribute', 'children': ['25', '28']}, {'id': '25', 'type': 'subscript', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'chunks'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'suffix_index'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'isdigit'}, {'id': '29', 'type': 'argument_list', 'children': []}; {'id': '30', 'type': 'block', 'children': ['31']}, {'id': '31', 'type': 'return_statement', 'children': ['32']}; {'id': '32', 'type': 'expression_list', 'children': ['33', '51']}, {'id': '33', 'type': 'call', 'children': ['34', '37']}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'sep'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '37', 'type': 'argument_list', 'children': ['38']}; {'id': '38', 'type': 'binary_operator', 'children': ['39', '44'], 'value': '+'}, {'id': '39', 'type': 'subscript', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'chunks'}, {'id': '41', 'type': 'slice', 'children': ['42', '43']}; {'id': '42', 'type': 'colon', 'children': []}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'suffix_index'}; {'id': '44', 'type': 'subscript', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'chunks'}; {'id': '46', 'type': 'slice', 'children': ['47', '50']}, {'id': '47', 'type': 'binary_operator', 'children': ['48', '49'], 'value': '+'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'suffix_index'}, {'id': '49', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '50', 'type': 'colon', 'children': []}, {'id': '51', 'type': 'call', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '53', 'type': 'argument_list', 'children': ['54']}; {'id': '54', 'type': 'subscript', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'chunks'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'suffix_index'}, {'id': '57', 'type': 'return_statement', 'children': ['58']}; {'id': '58', 'type': 'expression_list', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'path'} | def sort_key_for_numeric_suffixes(path, sep='.', suffix_index=-2):
chunks = path.split(sep)
if chunks[suffix_index].isdigit():
return sep.join(chunks[:suffix_index] + chunks[suffix_index+1:]), int(chunks[suffix_index])
return path, 0 |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_get_query'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'cursor'}; {'id': '6', 'type': 'block', 'children': ['7', '9', '27', '45', '56']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'string', 'children': [], 'value': "'''\r\n Query tempalte for source Solr, sorts by id by default.\r\n '''"}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'query'}; {'id': '12', 'type': 'dictionary', 'children': ['13', '16', '19', '24']}, {'id': '13', 'type': 'pair', 'children': ['14', '15']}; {'id': '14', 'type': 'string', 'children': [], 'value': "'q'"}, {'id': '15', 'type': 'string', 'children': [], 'value': "'*:*'"}; {'id': '16', 'type': 'pair', 'children': ['17', '18']}, {'id': '17', 'type': 'string', 'children': [], 'value': "'sort'"}; {'id': '18', 'type': 'string', 'children': [], 'value': "'id desc'"}, {'id': '19', 'type': 'pair', 'children': ['20', '21']}; {'id': '20', 'type': 'string', 'children': [], 'value': "'rows'"}, {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': '_rows'}; {'id': '24', 'type': 'pair', 'children': ['25', '26']}, {'id': '25', 'type': 'string', 'children': [], 'value': "'cursorMark'"}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'cursor'}, {'id': '27', 'type': 'if_statement', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': '_date_field'}, {'id': '31', 'type': 'block', 'children': ['32']}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}, {'id': '33', 'type': 'assignment', 'children': ['34', '37']}; {'id': '34', 'type': 'subscript', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'query'}; {'id': '36', 'type': 'string', 'children': [], 'value': "'sort'"}, {'id': '37', 'type': 'call', 'children': ['38', '41']}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}, {'id': '39', 'type': 'string', 'children': [], 'value': '"{} asc, id desc"'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '41', 'type': 'argument_list', 'children': ['42']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': '_date_field'}, {'id': '45', 'type': 'if_statement', 'children': ['46', '49']}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': '_per_shard'}, {'id': '49', 'type': 'block', 'children': ['50']}; {'id': '50', 'type': 'expression_statement', 'children': ['51']}, {'id': '51', 'type': 'assignment', 'children': ['52', '55']}; {'id': '52', 'type': 'subscript', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'query'}; {'id': '54', 'type': 'string', 'children': [], 'value': "'distrib'"}, {'id': '55', 'type': 'string', 'children': [], 'value': "'false'"}; {'id': '56', 'type': 'return_statement', 'children': ['57']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'query'} | def _get_query(self, cursor):
'''
Query tempalte for source Solr, sorts by id by default.
'''
query = {'q':'*:*',
'sort':'id desc',
'rows':self._rows,
'cursorMark':cursor}
if self._date_field:
query['sort'] = "{} asc, id desc".format(self._date_field)
if self._per_shard:
query['distrib'] = 'false'
return query |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'url_params'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'except_params'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'as_is'}; {'id': '10', 'type': 'False', 'children': []}, {'id': '11', 'type': 'block', 'children': ['12', '20', '24', '68', '102']}; {'id': '12', 'type': 'if_statement', 'children': ['13', '17']}, {'id': '13', 'type': 'not_operator', 'children': ['14']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'GET'}, {'id': '17', 'type': 'block', 'children': ['18']}; {'id': '18', 'type': 'return_statement', 'children': ['19']}, {'id': '19', 'type': 'string', 'children': [], 'value': "''"}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '23', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '24', 'type': 'for_statement', 'children': ['25', '28', '35']}, {'id': '25', 'type': 'pattern_list', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '28', 'type': 'call', 'children': ['29', '34']}, {'id': '29', 'type': 'attribute', 'children': ['30', '33']}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'GET'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '34', 'type': 'argument_list', 'children': []}, {'id': '35', 'type': 'block', 'children': ['36']}; {'id': '36', 'type': 'if_statement', 'children': ['37', '42']}, {'id': '37', 'type': 'boolean_operator', 'children': ['38', '39'], 'value': 'and'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'except_params'}, {'id': '39', 'type': 'comparison_operator', 'children': ['40', '41'], 'value': 'not'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'except_params'}; {'id': '42', 'type': 'block', 'children': ['43']}, {'id': '43', 'type': 'for_statement', 'children': ['44', '45', '53']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'v'}, {'id': '45', 'type': 'call', 'children': ['46', '51']}; {'id': '46', 'type': 'attribute', 'children': ['47', '50']}, {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'GET'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'getlist'}, {'id': '51', 'type': 'argument_list', 'children': ['52']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '53', 'type': 'block', 'children': ['54']}; {'id': '54', 'type': 'expression_statement', 'children': ['55']}, {'id': '55', 'type': 'call', 'children': ['56', '59']}; {'id': '56', 'type': 'attribute', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '59', 'type': 'argument_list', 'children': ['60']}; {'id': '60', 'type': 'binary_operator', 'children': ['61', '62'], 'value': '%'}, {'id': '61', 'type': 'string', 'children': [], 'value': "'%s=%s'"}; {'id': '62', 'type': 'tuple', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '64', 'type': 'call', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'urlquote'}; {'id': '66', 'type': 'argument_list', 'children': ['67']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '68', 'type': 'if_statement', 'children': ['69', '70', '82']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'as_is'}; {'id': '70', 'type': 'block', 'children': ['71']}, {'id': '71', 'type': 'expression_statement', 'children': ['72']}; {'id': '72', 'type': 'assignment', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'str_params'}; {'id': '74', 'type': 'binary_operator', 'children': ['75', '76'], 'value': '+'}, {'id': '75', 'type': 'string', 'children': [], 'value': "'?'"}; {'id': '76', 'type': 'call', 'children': ['77', '80']}, {'id': '77', 'type': 'attribute', 'children': ['78', '79']}; {'id': '78', 'type': 'string', 'children': [], 'value': "'&'"}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '80', 'type': 'argument_list', 'children': ['81']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '82', 'type': 'else_clause', 'children': ['83']}, {'id': '83', 'type': 'block', 'children': ['84', '95']}; {'id': '84', 'type': 'expression_statement', 'children': ['85']}, {'id': '85', 'type': 'assignment', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'str_params'}, {'id': '87', 'type': 'binary_operator', 'children': ['88', '89'], 'value': '+'}; {'id': '88', 'type': 'string', 'children': [], 'value': "'?'"}, {'id': '89', 'type': 'call', 'children': ['90', '93']}; {'id': '90', 'type': 'attribute', 'children': ['91', '92']}, {'id': '91', 'type': 'string', 'children': [], 'value': "'&'"}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '93', 'type': 'argument_list', 'children': ['94']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '95', 'type': 'expression_statement', 'children': ['96']}; {'id': '96', 'type': 'assignment', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'str_params'}; {'id': '98', 'type': 'call', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'urlquote'}; {'id': '100', 'type': 'argument_list', 'children': ['101']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'str_params'}; {'id': '102', 'type': 'return_statement', 'children': ['103']}, {'id': '103', 'type': 'call', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'mark_safe'}, {'id': '105', 'type': 'argument_list', 'children': ['106']} | def url_params(request, except_params=None, as_is=False):
if not request.GET:
return ''
params = []
for key, value in request.GET.items():
if except_params and key not in except_params:
for v in request.GET.getlist(key):
params.append('%s=%s' % (key, urlquote(v)))
if as_is:
str_params = '?' + '&'.join(params)
else:
str_params = '?' + '&'.join(params)
str_params = urlquote(str_params)
return mark_safe(str_params) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'compose'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'list_splat_pattern', 'children': ['5']}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'funcs'}; {'id': '6', 'type': 'block', 'children': ['7']}, {'id': '7', 'type': 'if_statement', 'children': ['8', '14', '38', '73', '86', '98']}; {'id': '8', 'type': 'comparison_operator', 'children': ['9', '13'], 'value': '=='}, {'id': '9', 'type': 'call', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '11', 'type': 'argument_list', 'children': ['12']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'funcs'}, {'id': '13', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '14', 'type': 'block', 'children': ['15', '21']}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '20']}, {'id': '17', 'type': 'pattern_list', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'f0'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'f1'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'funcs'}, {'id': '21', 'type': 'return_statement', 'children': ['22']}; {'id': '22', 'type': 'lambda', 'children': ['23', '28']}, {'id': '23', 'type': 'lambda_parameters', 'children': ['24', '26']}; {'id': '24', 'type': 'list_splat_pattern', 'children': ['25']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'a'}; {'id': '26', 'type': 'dictionary_splat_pattern', 'children': ['27']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'kw'}; {'id': '28', 'type': 'call', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'f0'}; {'id': '30', 'type': 'argument_list', 'children': ['31']}, {'id': '31', 'type': 'call', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'f1'}, {'id': '33', 'type': 'argument_list', 'children': ['34', '36']}; {'id': '34', 'type': 'list_splat', 'children': ['35']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'a'}; {'id': '36', 'type': 'dictionary_splat', 'children': ['37']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'kw'}; {'id': '38', 'type': 'elif_clause', 'children': ['39', '45']}, {'id': '39', 'type': 'comparison_operator', 'children': ['40', '44'], 'value': '=='}; {'id': '40', 'type': 'call', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '42', 'type': 'argument_list', 'children': ['43']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'funcs'}; {'id': '44', 'type': 'integer', 'children': [], 'value': '3'}, {'id': '45', 'type': 'block', 'children': ['46', '53']}; {'id': '46', 'type': 'expression_statement', 'children': ['47']}, {'id': '47', 'type': 'assignment', 'children': ['48', '52']}; {'id': '48', 'type': 'pattern_list', 'children': ['49', '50', '51']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'f0'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'f1'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'f2'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'funcs'}, {'id': '53', 'type': 'return_statement', 'children': ['54']}; {'id': '54', 'type': 'lambda', 'children': ['55', '60']}, {'id': '55', 'type': 'lambda_parameters', 'children': ['56', '58']}; {'id': '56', 'type': 'list_splat_pattern', 'children': ['57']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'a'}; {'id': '58', 'type': 'dictionary_splat_pattern', 'children': ['59']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'kw'}; {'id': '60', 'type': 'call', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'f0'}; {'id': '62', 'type': 'argument_list', 'children': ['63']}, {'id': '63', 'type': 'call', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'f1'}, {'id': '65', 'type': 'argument_list', 'children': ['66']}; {'id': '66', 'type': 'call', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'f2'}; {'id': '68', 'type': 'argument_list', 'children': ['69', '71']}, {'id': '69', 'type': 'list_splat', 'children': ['70']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'a'}, {'id': '71', 'type': 'dictionary_splat', 'children': ['72']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'kw'}, {'id': '73', 'type': 'elif_clause', 'children': ['74', '80']}; {'id': '74', 'type': 'comparison_operator', 'children': ['75', '79'], 'value': '=='}, {'id': '75', 'type': 'call', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '77', 'type': 'argument_list', 'children': ['78']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'funcs'}, {'id': '79', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '80', 'type': 'block', 'children': ['81']}, {'id': '81', 'type': 'return_statement', 'children': ['82']}; {'id': '82', 'type': 'lambda', 'children': ['83', '85']}, {'id': '83', 'type': 'lambda_parameters', 'children': ['84']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '86', 'type': 'elif_clause', 'children': ['87', '93']}, {'id': '87', 'type': 'comparison_operator', 'children': ['88', '92'], 'value': '=='}; {'id': '88', 'type': 'call', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '90', 'type': 'argument_list', 'children': ['91']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'funcs'}; {'id': '92', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '93', 'type': 'block', 'children': ['94']}; {'id': '94', 'type': 'return_statement', 'children': ['95']}, {'id': '95', 'type': 'subscript', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'funcs'}, {'id': '97', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '98', 'type': 'else_clause', 'children': ['99']}, {'id': '99', 'type': 'block', 'children': ['100', '141']}; {'id': '100', 'type': 'function_definition', 'children': ['101', '102', '107']}, {'id': '101', 'type': 'function_name', 'children': [], 'value': 'composed'}; {'id': '102', 'type': 'parameters', 'children': ['103', '105']}, {'id': '103', 'type': 'list_splat_pattern', 'children': ['104']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '105', 'type': 'dictionary_splat_pattern', 'children': ['106']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '107', 'type': 'block', 'children': ['108', '121', '139']}; {'id': '108', 'type': 'expression_statement', 'children': ['109']}, {'id': '109', 'type': 'assignment', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '111', 'type': 'call', 'children': ['112', '116']}; {'id': '112', 'type': 'subscript', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'funcs'}; {'id': '114', 'type': 'unary_operator', 'children': ['115'], 'value': '-'}, {'id': '115', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '116', 'type': 'argument_list', 'children': ['117', '119']}, {'id': '117', 'type': 'list_splat', 'children': ['118']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '119', 'type': 'dictionary_splat', 'children': ['120']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '121', 'type': 'for_statement', 'children': ['122', '123', '131']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '123', 'type': 'subscript', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'funcs'}, {'id': '125', 'type': 'slice', 'children': ['126', '127', '128', '129']}; {'id': '126', 'type': 'colon', 'children': []}, {'id': '127', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '128', 'type': 'colon', 'children': []}, {'id': '129', 'type': 'unary_operator', 'children': ['130'], 'value': '-'}; {'id': '130', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '131', 'type': 'block', 'children': ['132']}; {'id': '132', 'type': 'expression_statement', 'children': ['133']}, {'id': '133', 'type': 'assignment', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '135', 'type': 'call', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '137', 'type': 'argument_list', 'children': ['138']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '139', 'type': 'return_statement', 'children': ['140']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '141', 'type': 'return_statement', 'children': ['142']} | def compose(*funcs):
if len(funcs) == 2: f0,f1=funcs; return lambda *a,**kw: f0(f1(*a,**kw))
elif len(funcs) == 3: f0,f1,f2=funcs; return lambda *a,**kw: f0(f1(f2(*a,**kw)))
elif len(funcs) == 0: return lambda x:x
elif len(funcs) == 1: return funcs[0]
else:
def composed(*args,**kwargs):
y = funcs[-1](*args,**kwargs)
for f in funcs[:0:-1]: y = f(y)
return y
return composed |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_sort_lines'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '11']}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': '_valid_lines'}, {'id': '11', 'type': 'call', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '13', 'type': 'argument_list', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': '_valid_lines'}, {'id': '17', 'type': 'keyword_argument', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '19', 'type': 'lambda', 'children': ['20', '22']}; {'id': '20', 'type': 'lambda_parameters', 'children': ['21']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'line'} | def _sort_lines(self):
self._valid_lines = sorted(
self._valid_lines,
key=lambda line: line.accept_date,
) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_sort_and_trim'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'reverse'}, {'id': '7', 'type': 'False', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9', '13', '21', '39']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'threshold'}; {'id': '12', 'type': 'integer', 'children': [], 'value': '10'}, {'id': '13', 'type': 'expression_statement', 'children': ['14']}; {'id': '14', 'type': 'assignment', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'data_list'}; {'id': '16', 'type': 'call', 'children': ['17', '20']}, {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '20', 'type': 'argument_list', 'children': []}, {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'data_list'}; {'id': '24', 'type': 'call', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '26', 'type': 'argument_list', 'children': ['27', '28', '36']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'data_list'}; {'id': '28', 'type': 'keyword_argument', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '30', 'type': 'lambda', 'children': ['31', '33']}, {'id': '31', 'type': 'lambda_parameters', 'children': ['32']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'data_info'}, {'id': '33', 'type': 'subscript', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'data_info'}, {'id': '35', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '36', 'type': 'keyword_argument', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'reverse'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'reverse'}, {'id': '39', 'type': 'return_statement', 'children': ['40']}; {'id': '40', 'type': 'subscript', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'data_list'}; {'id': '42', 'type': 'slice', 'children': ['43', '44']}, {'id': '43', 'type': 'colon', 'children': []} | def _sort_and_trim(data, reverse=False):
threshold = 10
data_list = data.items()
data_list = sorted(
data_list,
key=lambda data_info: data_info[1],
reverse=reverse,
)
return data_list[:threshold] |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_queryset'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '8', '20', '29', '38']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'string', 'children': [], 'value': "'''Apply Datatables sort and search criterion to QuerySet'''"}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}, {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'qs'}, {'id': '11', 'type': 'call', 'children': ['12', '19']}; {'id': '12', 'type': 'attribute', 'children': ['13', '18']}, {'id': '13', 'type': 'call', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'super'}, {'id': '15', 'type': 'argument_list', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'DatatablesView'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'get_queryset'}, {'id': '19', 'type': 'argument_list', 'children': []}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'qs'}, {'id': '23', 'type': 'call', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'global_search'}, {'id': '27', 'type': 'argument_list', 'children': ['28']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'qs'}, {'id': '29', 'type': 'expression_statement', 'children': ['30']}; {'id': '30', 'type': 'assignment', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'qs'}; {'id': '32', 'type': 'call', 'children': ['33', '36']}, {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'column_search'}; {'id': '36', 'type': 'argument_list', 'children': ['37']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'qs'}; {'id': '38', 'type': 'return_statement', 'children': ['39']}, {'id': '39', 'type': 'call', 'children': ['40', '43']}; {'id': '40', 'type': 'attribute', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'qs'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'order_by'}, {'id': '43', 'type': 'argument_list', 'children': ['44']}; {'id': '44', 'type': 'list_splat', 'children': ['45']}, {'id': '45', 'type': 'call', 'children': ['46', '49']}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'get_orders'}, {'id': '49', 'type': 'argument_list', 'children': []} | def get_queryset(self):
'''Apply Datatables sort and search criterion to QuerySet'''
qs = super(DatatablesView, self).get_queryset()
qs = self.global_search(qs)
qs = self.column_search(qs)
return qs.order_by(*self.get_orders()) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'rangify'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'number_list'}, {'id': '5', 'type': 'block', 'children': ['6', '12', '16', '24', '57', '66']}; {'id': '6', 'type': 'if_statement', 'children': ['7', '9']}, {'id': '7', 'type': 'not_operator', 'children': ['8']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'number_list'}, {'id': '9', 'type': 'block', 'children': ['10']}; {'id': '10', 'type': 'return_statement', 'children': ['11']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'number_list'}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}, {'id': '13', 'type': 'assignment', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'ranges'}, {'id': '15', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '16', 'type': 'expression_statement', 'children': ['17']}, {'id': '17', 'type': 'assignment', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'range_start'}, {'id': '19', 'type': 'assignment', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'prev_num'}, {'id': '21', 'type': 'subscript', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'number_list'}, {'id': '23', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '24', 'type': 'for_statement', 'children': ['25', '26', '31']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'num'}; {'id': '26', 'type': 'subscript', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'number_list'}; {'id': '28', 'type': 'slice', 'children': ['29', '30']}, {'id': '29', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '30', 'type': 'colon', 'children': []}, {'id': '31', 'type': 'block', 'children': ['32', '53']}; {'id': '32', 'type': 'if_statement', 'children': ['33', '39']}, {'id': '33', 'type': 'comparison_operator', 'children': ['34', '35'], 'value': '!='}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'num'}, {'id': '35', 'type': 'parenthesized_expression', 'children': ['36']}; {'id': '36', 'type': 'binary_operator', 'children': ['37', '38'], 'value': '+'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'prev_num'}; {'id': '38', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '39', 'type': 'block', 'children': ['40', '49']}; {'id': '40', 'type': 'expression_statement', 'children': ['41']}, {'id': '41', 'type': 'call', 'children': ['42', '45']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'ranges'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '45', 'type': 'argument_list', 'children': ['46']}; {'id': '46', 'type': 'tuple', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'range_start'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'prev_num'}, {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'assignment', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'range_start'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'num'}, {'id': '53', 'type': 'expression_statement', 'children': ['54']}; {'id': '54', 'type': 'assignment', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'prev_num'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'num'}, {'id': '57', 'type': 'expression_statement', 'children': ['58']}; {'id': '58', 'type': 'call', 'children': ['59', '62']}, {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'ranges'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '62', 'type': 'argument_list', 'children': ['63']}, {'id': '63', 'type': 'tuple', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'range_start'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'prev_num'}; {'id': '66', 'type': 'return_statement', 'children': ['67']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'ranges'} | def rangify(number_list):
if not number_list:
return number_list
ranges = []
range_start = prev_num = number_list[0]
for num in number_list[1:]:
if num != (prev_num + 1):
ranges.append((range_start, prev_num))
range_start = num
prev_num = num
ranges.append((range_start, prev_num))
return ranges |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '13']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_solver'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'refresh'}; {'id': '10', 'type': 'False', 'children': []}, {'id': '11', 'type': 'dictionary_splat_pattern', 'children': ['12']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'filters'}, {'id': '13', 'type': 'block', 'children': ['14', '22', '35', '49']}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}, {'id': '15', 'type': 'call', 'children': ['16', '19']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': '_LOGGER'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'debug'}, {'id': '19', 'type': 'argument_list', 'children': ['20', '21']}; {'id': '20', 'type': 'string', 'children': [], 'value': '"Requested a solver that best matches feature filters=%r"'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'filters'}; {'id': '22', 'type': 'if_statement', 'children': ['23', '26']}, {'id': '23', 'type': 'comparison_operator', 'children': ['24', '25'], 'value': 'is'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '25', 'type': 'None', 'children': []}; {'id': '26', 'type': 'block', 'children': ['27']}, {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'call', 'children': ['29', '32']}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'filters'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'setdefault'}; {'id': '32', 'type': 'argument_list', 'children': ['33', '34']}, {'id': '33', 'type': 'string', 'children': [], 'value': "'name'"}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '35', 'type': 'if_statement', 'children': ['36', '42']}; {'id': '36', 'type': 'boolean_operator', 'children': ['37', '39'], 'value': 'and'}, {'id': '37', 'type': 'not_operator', 'children': ['38']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'filters'}, {'id': '39', 'type': 'attribute', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'default_solver'}; {'id': '42', 'type': 'block', 'children': ['43']}, {'id': '43', 'type': 'expression_statement', 'children': ['44']}; {'id': '44', 'type': 'assignment', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'filters'}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'default_solver'}, {'id': '49', 'type': 'try_statement', 'children': ['50', '72']}; {'id': '50', 'type': 'block', 'children': ['51', '59']}, {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'call', 'children': ['53', '56']}, {'id': '53', 'type': 'attribute', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': '_LOGGER'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'debug'}; {'id': '56', 'type': 'argument_list', 'children': ['57', '58']}, {'id': '57', 'type': 'string', 'children': [], 'value': '"Fetching solvers according to filters=%r"'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'filters'}, {'id': '59', 'type': 'return_statement', 'children': ['60']}; {'id': '60', 'type': 'subscript', 'children': ['61', '71']}, {'id': '61', 'type': 'call', 'children': ['62', '65']}; {'id': '62', 'type': 'attribute', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'get_solvers'}, {'id': '65', 'type': 'argument_list', 'children': ['66', '69']}; {'id': '66', 'type': 'keyword_argument', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'refresh'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'refresh'}, {'id': '69', 'type': 'dictionary_splat', 'children': ['70']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'filters'}, {'id': '71', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '72', 'type': 'except_clause', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'IndexError'}; {'id': '74', 'type': 'block', 'children': ['75']}, {'id': '75', 'type': 'raise_statement', 'children': ['76']}; {'id': '76', 'type': 'call', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'SolverNotFoundError'}; {'id': '78', 'type': 'argument_list', 'children': ['79']}, {'id': '79', 'type': 'string', 'children': [], 'value': '"Solver with the requested features not available"'} | def get_solver(self, name=None, refresh=False, **filters):
_LOGGER.debug("Requested a solver that best matches feature filters=%r", filters)
if name is not None:
filters.setdefault('name', name)
if not filters and self.default_solver:
filters = self.default_solver
try:
_LOGGER.debug("Fetching solvers according to filters=%r", filters)
return self.get_solvers(refresh=refresh, **filters)[0]
except IndexError:
raise SolverNotFoundError("Solver with the requested features not available") |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'find_germanet_xml_files'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'xml_path'}, {'id': '5', 'type': 'block', 'children': ['6', '8', '28', '55', '70', '79', '102', '117', '153', '180', '195', '204', '230', '245', '254', '263']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'string', 'children': [], 'value': "'''\n Globs the XML files contained in the given directory and sorts\n them into sections for import into the MongoDB database.\n Arguments:\n - `xml_path`: the path to the directory containing the GermaNet\n XML files\n '''"}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}, {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'xml_files'}, {'id': '11', 'type': 'call', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '13', 'type': 'argument_list', 'children': ['14']}; {'id': '14', 'type': 'call', 'children': ['15', '18']}, {'id': '15', 'type': 'attribute', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'glob'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'glob'}; {'id': '18', 'type': 'argument_list', 'children': ['19']}, {'id': '19', 'type': 'call', 'children': ['20', '25']}; {'id': '20', 'type': 'attribute', 'children': ['21', '24']}, {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '25', 'type': 'argument_list', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'xml_path'}, {'id': '27', 'type': 'string', 'children': [], 'value': "'*.xml'"}; {'id': '28', 'type': 'expression_statement', 'children': ['29']}, {'id': '29', 'type': 'assignment', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'lex_files'}, {'id': '31', 'type': 'list_comprehension', 'children': ['32', '33', '36']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'xml_file'}, {'id': '33', 'type': 'for_in_clause', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'xml_file'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'xml_files'}; {'id': '36', 'type': 'if_clause', 'children': ['37']}, {'id': '37', 'type': 'call', 'children': ['38', '41']}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 're'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'match'}, {'id': '41', 'type': 'argument_list', 'children': ['42', '43']}; {'id': '42', 'type': 'string', 'children': [], 'value': "r'(adj|nomen|verben)\\.'"}, {'id': '43', 'type': 'call', 'children': ['44', '54']}; {'id': '44', 'type': 'attribute', 'children': ['45', '53']}, {'id': '45', 'type': 'call', 'children': ['46', '51']}; {'id': '46', 'type': 'attribute', 'children': ['47', '50']}, {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'basename'}, {'id': '51', 'type': 'argument_list', 'children': ['52']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'xml_file'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'lower'}; {'id': '54', 'type': 'argument_list', 'children': []}, {'id': '55', 'type': 'expression_statement', 'children': ['56']}; {'id': '56', 'type': 'assignment', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'xml_files'}; {'id': '58', 'type': 'call', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '60', 'type': 'argument_list', 'children': ['61']}, {'id': '61', 'type': 'binary_operator', 'children': ['62', '66'], 'value': '-'}; {'id': '62', 'type': 'call', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '64', 'type': 'argument_list', 'children': ['65']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'xml_files'}; {'id': '66', 'type': 'call', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '68', 'type': 'argument_list', 'children': ['69']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'lex_files'}; {'id': '70', 'type': 'if_statement', 'children': ['71', '73']}, {'id': '71', 'type': 'not_operator', 'children': ['72']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'lex_files'}, {'id': '73', 'type': 'block', 'children': ['74']}; {'id': '74', 'type': 'expression_statement', 'children': ['75']}, {'id': '75', 'type': 'call', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'print'}, {'id': '77', 'type': 'argument_list', 'children': ['78']}; {'id': '78', 'type': 'string', 'children': [], 'value': "'ERROR: cannot find lexical information files'"}, {'id': '79', 'type': 'expression_statement', 'children': ['80']}; {'id': '80', 'type': 'assignment', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'gn_rels_file'}; {'id': '82', 'type': 'list_comprehension', 'children': ['83', '84', '87']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'xml_file'}; {'id': '84', 'type': 'for_in_clause', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'xml_file'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'xml_files'}, {'id': '87', 'type': 'if_clause', 'children': ['88']}; {'id': '88', 'type': 'comparison_operator', 'children': ['89', '101'], 'value': '=='}, {'id': '89', 'type': 'call', 'children': ['90', '100']}; {'id': '90', 'type': 'attribute', 'children': ['91', '99']}, {'id': '91', 'type': 'call', 'children': ['92', '97']}; {'id': '92', 'type': 'attribute', 'children': ['93', '96']}, {'id': '93', 'type': 'attribute', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'basename'}, {'id': '97', 'type': 'argument_list', 'children': ['98']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'xml_file'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'lower'}; {'id': '100', 'type': 'argument_list', 'children': []}, {'id': '101', 'type': 'string', 'children': [], 'value': "'gn_relations.xml'"}; {'id': '102', 'type': 'expression_statement', 'children': ['103']}, {'id': '103', 'type': 'assignment', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'xml_files'}, {'id': '105', 'type': 'call', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '107', 'type': 'argument_list', 'children': ['108']}; {'id': '108', 'type': 'binary_operator', 'children': ['109', '113'], 'value': '-'}, {'id': '109', 'type': 'call', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '111', 'type': 'argument_list', 'children': ['112']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'xml_files'}, {'id': '113', 'type': 'call', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '115', 'type': 'argument_list', 'children': ['116']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'gn_rels_file'}, {'id': '117', 'type': 'if_statement', 'children': ['118', '120', '130']}; {'id': '118', 'type': 'not_operator', 'children': ['119']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'gn_rels_file'}; {'id': '120', 'type': 'block', 'children': ['121', '126']}, {'id': '121', 'type': 'expression_statement', 'children': ['122']}; {'id': '122', 'type': 'call', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '124', 'type': 'argument_list', 'children': ['125']}, {'id': '125', 'type': 'string', 'children': [], 'value': "'ERROR: cannot find relations file gn_relations.xml'"}; {'id': '126', 'type': 'expression_statement', 'children': ['127']}, {'id': '127', 'type': 'assignment', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'gn_rels_file'}, {'id': '129', 'type': 'None', 'children': []}; {'id': '130', 'type': 'else_clause', 'children': ['131']}, {'id': '131', 'type': 'block', 'children': ['132', '147']}; {'id': '132', 'type': 'if_statement', 'children': ['133', '139']}, {'id': '133', 'type': 'comparison_operator', 'children': ['134', '135'], 'value': '<'}; {'id': '134', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '135', 'type': 'call', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '137', 'type': 'argument_list', 'children': ['138']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'gn_rels_file'}, {'id': '139', 'type': 'block', 'children': ['140']}; {'id': '140', 'type': 'expression_statement', 'children': ['141']}, {'id': '141', 'type': 'call', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'print'}, {'id': '143', 'type': 'argument_list', 'children': ['144']}; {'id': '144', 'type': 'concatenated_string', 'children': ['145', '146']}, {'id': '145', 'type': 'string', 'children': [], 'value': "'WARNING: more than one relations file gn_relations.xml, '"}; {'id': '146', 'type': 'string', 'children': [], 'value': "'taking first match'"}, {'id': '147', 'type': 'expression_statement', 'children': ['148']}; {'id': '148', 'type': 'assignment', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'gn_rels_file'}; {'id': '150', 'type': 'subscript', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'gn_rels_file'}; {'id': '152', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '153', 'type': 'expression_statement', 'children': ['154']}; {'id': '154', 'type': 'assignment', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'wiktionary_files'}; {'id': '156', 'type': 'list_comprehension', 'children': ['157', '158', '161']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'xml_file'}; {'id': '158', 'type': 'for_in_clause', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'xml_file'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'xml_files'}, {'id': '161', 'type': 'if_clause', 'children': ['162']}; {'id': '162', 'type': 'call', 'children': ['163', '166']}, {'id': '163', 'type': 'attribute', 'children': ['164', '165']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 're'}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'match'}; {'id': '166', 'type': 'argument_list', 'children': ['167', '168']}, {'id': '167', 'type': 'string', 'children': [], 'value': "r'wiktionaryparaphrases-'"}; {'id': '168', 'type': 'call', 'children': ['169', '179']}, {'id': '169', 'type': 'attribute', 'children': ['170', '178']}; {'id': '170', 'type': 'call', 'children': ['171', '176']}, {'id': '171', 'type': 'attribute', 'children': ['172', '175']}; {'id': '172', 'type': 'attribute', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'basename'}; {'id': '176', 'type': 'argument_list', 'children': ['177']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'xml_file'}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'lower'}, {'id': '179', 'type': 'argument_list', 'children': []}; {'id': '180', 'type': 'expression_statement', 'children': ['181']}, {'id': '181', 'type': 'assignment', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'xml_files'}, {'id': '183', 'type': 'call', 'children': ['184', '185']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '185', 'type': 'argument_list', 'children': ['186']}; {'id': '186', 'type': 'binary_operator', 'children': ['187', '191'], 'value': '-'}, {'id': '187', 'type': 'call', 'children': ['188', '189']}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '189', 'type': 'argument_list', 'children': ['190']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'xml_files'}, {'id': '191', 'type': 'call', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '193', 'type': 'argument_list', 'children': ['194']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'wiktionary_files'}, {'id': '195', 'type': 'if_statement', 'children': ['196', '198']}; {'id': '196', 'type': 'not_operator', 'children': ['197']}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'wiktionary_files'}; {'id': '198', 'type': 'block', 'children': ['199']}, {'id': '199', 'type': 'expression_statement', 'children': ['200']}; {'id': '200', 'type': 'call', 'children': ['201', '202']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '202', 'type': 'argument_list', 'children': ['203']}, {'id': '203', 'type': 'string', 'children': [], 'value': "'WARNING: cannot find wiktionary paraphrase files'"}; {'id': '204', 'type': 'expression_statement', 'children': ['205']}, {'id': '205', 'type': 'assignment', 'children': ['206', '207']}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'ili_files'}, {'id': '207', 'type': 'list_comprehension', 'children': ['208', '209', '212']}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'xml_file'}, {'id': '209', 'type': 'for_in_clause', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'xml_file'}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'xml_files'}; {'id': '212', 'type': 'if_clause', 'children': ['213']}, {'id': '213', 'type': 'call', 'children': ['214', '228']}; {'id': '214', 'type': 'attribute', 'children': ['215', '227']}, {'id': '215', 'type': 'call', 'children': ['216', '226']}; {'id': '216', 'type': 'attribute', 'children': ['217', '225']}, {'id': '217', 'type': 'call', 'children': ['218', '223']}; {'id': '218', 'type': 'attribute', 'children': ['219', '222']}, {'id': '219', 'type': 'attribute', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'basename'}, {'id': '223', 'type': 'argument_list', 'children': ['224']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'xml_file'}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'lower'}; {'id': '226', 'type': 'argument_list', 'children': []}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'startswith'}; {'id': '228', 'type': 'argument_list', 'children': ['229']}, {'id': '229', 'type': 'string', 'children': [], 'value': "'interlingualindex'"}; {'id': '230', 'type': 'expression_statement', 'children': ['231']}, {'id': '231', 'type': 'assignment', 'children': ['232', '233']}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'xml_files'}, {'id': '233', 'type': 'call', 'children': ['234', '235']}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '235', 'type': 'argument_list', 'children': ['236']}; {'id': '236', 'type': 'binary_operator', 'children': ['237', '241'], 'value': '-'}, {'id': '237', 'type': 'call', 'children': ['238', '239']}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '239', 'type': 'argument_list', 'children': ['240']}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'xml_files'}, {'id': '241', 'type': 'call', 'children': ['242', '243']}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '243', 'type': 'argument_list', 'children': ['244']}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'ili_files'}, {'id': '245', 'type': 'if_statement', 'children': ['246', '248']}; {'id': '246', 'type': 'not_operator', 'children': ['247']}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'ili_files'}; {'id': '248', 'type': 'block', 'children': ['249']}, {'id': '249', 'type': 'expression_statement', 'children': ['250']}; {'id': '250', 'type': 'call', 'children': ['251', '252']}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '252', 'type': 'argument_list', 'children': ['253']}, {'id': '253', 'type': 'string', 'children': [], 'value': "'WARNING: cannot find interlingual index file'"}; {'id': '254', 'type': 'if_statement', 'children': ['255', '256']}, {'id': '255', 'type': 'identifier', 'children': [], 'value': 'xml_files'}; {'id': '256', 'type': 'block', 'children': ['257']}, {'id': '257', 'type': 'expression_statement', 'children': ['258']}; {'id': '258', 'type': 'call', 'children': ['259', '260']}, {'id': '259', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '260', 'type': 'argument_list', 'children': ['261', '262']}, {'id': '261', 'type': 'string', 'children': [], 'value': "'WARNING: unrecognised xml files:'"}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'xml_files'}, {'id': '263', 'type': 'return_statement', 'children': ['264']}; {'id': '264', 'type': 'expression_list', 'children': ['265', '266', '267', '268']}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'lex_files'}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'gn_rels_file'}, {'id': '267', 'type': 'identifier', 'children': [], 'value': 'wiktionary_files'} | def find_germanet_xml_files(xml_path):
'''
Globs the XML files contained in the given directory and sorts
them into sections for import into the MongoDB database.
Arguments:
- `xml_path`: the path to the directory containing the GermaNet
XML files
'''
xml_files = sorted(glob.glob(os.path.join(xml_path, '*.xml')))
lex_files = [xml_file for xml_file in xml_files if
re.match(r'(adj|nomen|verben)\.',
os.path.basename(xml_file).lower())]
xml_files = sorted(set(xml_files) - set(lex_files))
if not lex_files:
print('ERROR: cannot find lexical information files')
gn_rels_file = [xml_file for xml_file in xml_files if
os.path.basename(xml_file).lower() == 'gn_relations.xml']
xml_files = sorted(set(xml_files) - set(gn_rels_file))
if not gn_rels_file:
print('ERROR: cannot find relations file gn_relations.xml')
gn_rels_file = None
else:
if 1 < len(gn_rels_file):
print ('WARNING: more than one relations file gn_relations.xml, '
'taking first match')
gn_rels_file = gn_rels_file[0]
wiktionary_files = [xml_file for xml_file in xml_files if
re.match(r'wiktionaryparaphrases-',
os.path.basename(xml_file).lower())]
xml_files = sorted(set(xml_files) - set(wiktionary_files))
if not wiktionary_files:
print('WARNING: cannot find wiktionary paraphrase files')
ili_files = [xml_file for xml_file in xml_files if
os.path.basename(xml_file).lower().startswith(
'interlingualindex')]
xml_files = sorted(set(xml_files) - set(ili_files))
if not ili_files:
print('WARNING: cannot find interlingual index file')
if xml_files:
print('WARNING: unrecognised xml files:', xml_files)
return lex_files, gn_rels_file, wiktionary_files, ili_files |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '31']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'iter_org_issues'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12', '15', '18', '21', '24', '28']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'filter'}; {'id': '8', 'type': 'string', 'children': [], 'value': "''"}, {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'state'}, {'id': '11', 'type': 'string', 'children': [], 'value': "''"}; {'id': '12', 'type': 'default_parameter', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'labels'}; {'id': '14', 'type': 'string', 'children': [], 'value': "''"}, {'id': '15', 'type': 'default_parameter', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '17', 'type': 'string', 'children': [], 'value': "''"}; {'id': '18', 'type': 'default_parameter', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'direction'}; {'id': '20', 'type': 'string', 'children': [], 'value': "''"}, {'id': '21', 'type': 'default_parameter', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'since'}, {'id': '23', 'type': 'None', 'children': []}; {'id': '24', 'type': 'default_parameter', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'number'}; {'id': '26', 'type': 'unary_operator', 'children': ['27'], 'value': '-'}, {'id': '27', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '28', 'type': 'default_parameter', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'etag'}; {'id': '30', 'type': 'None', 'children': []}, {'id': '31', 'type': 'block', 'children': ['32', '43', '55']}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}, {'id': '33', 'type': 'assignment', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'url'}, {'id': '35', 'type': 'call', 'children': ['36', '39']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': '_build_url'}, {'id': '39', 'type': 'argument_list', 'children': ['40', '41', '42']}; {'id': '40', 'type': 'string', 'children': [], 'value': "'orgs'"}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '42', 'type': 'string', 'children': [], 'value': "'issues'"}, {'id': '43', 'type': 'expression_statement', 'children': ['44']}; {'id': '44', 'type': 'assignment', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '46', 'type': 'call', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'issue_params'}; {'id': '48', 'type': 'argument_list', 'children': ['49', '50', '51', '52', '53', '54']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'filter'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'state'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'labels'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'direction'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'since'}, {'id': '55', 'type': 'return_statement', 'children': ['56']}; {'id': '56', 'type': 'call', 'children': ['57', '60']}, {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': '_iter'}; {'id': '60', 'type': 'argument_list', 'children': ['61', '65', '66', '67', '68']}, {'id': '61', 'type': 'call', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '63', 'type': 'argument_list', 'children': ['64']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'number'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'Issue'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'params'} | def iter_org_issues(self, name, filter='', state='', labels='', sort='',
direction='', since=None, number=-1, etag=None):
url = self._build_url('orgs', name, 'issues')
params = issue_params(filter, state, labels, sort, direction, since)
return self._iter(int(number), url, Issue, params, etag) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '21']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'iter_repos'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '18']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'direction'}, {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'number'}; {'id': '16', 'type': 'unary_operator', 'children': ['17'], 'value': '-'}, {'id': '17', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '18', 'type': 'default_parameter', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'etag'}; {'id': '20', 'type': 'None', 'children': []}, {'id': '21', 'type': 'block', 'children': ['22', '32', '36', '55', '73', '89']}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}, {'id': '23', 'type': 'assignment', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'url'}, {'id': '25', 'type': 'call', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': '_build_url'}, {'id': '29', 'type': 'argument_list', 'children': ['30', '31']}; {'id': '30', 'type': 'string', 'children': [], 'value': "'user'"}, {'id': '31', 'type': 'string', 'children': [], 'value': "'repos'"}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}, {'id': '33', 'type': 'assignment', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '35', 'type': 'dictionary', 'children': []}; {'id': '36', 'type': 'if_statement', 'children': ['37', '45']}, {'id': '37', 'type': 'comparison_operator', 'children': ['38', '39'], 'value': 'in'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '39', 'type': 'tuple', 'children': ['40', '41', '42', '43', '44']}; {'id': '40', 'type': 'string', 'children': [], 'value': "'all'"}, {'id': '41', 'type': 'string', 'children': [], 'value': "'owner'"}; {'id': '42', 'type': 'string', 'children': [], 'value': "'public'"}, {'id': '43', 'type': 'string', 'children': [], 'value': "'private'"}; {'id': '44', 'type': 'string', 'children': [], 'value': "'member'"}, {'id': '45', 'type': 'block', 'children': ['46']}; {'id': '46', 'type': 'expression_statement', 'children': ['47']}, {'id': '47', 'type': 'call', 'children': ['48', '51']}; {'id': '48', 'type': 'attribute', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'update'}, {'id': '51', 'type': 'argument_list', 'children': ['52']}; {'id': '52', 'type': 'keyword_argument', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'type'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '55', 'type': 'if_statement', 'children': ['56', '63']}; {'id': '56', 'type': 'comparison_operator', 'children': ['57', '58'], 'value': 'in'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '58', 'type': 'tuple', 'children': ['59', '60', '61', '62']}, {'id': '59', 'type': 'string', 'children': [], 'value': "'created'"}; {'id': '60', 'type': 'string', 'children': [], 'value': "'updated'"}, {'id': '61', 'type': 'string', 'children': [], 'value': "'pushed'"}; {'id': '62', 'type': 'string', 'children': [], 'value': "'full_name'"}, {'id': '63', 'type': 'block', 'children': ['64']}; {'id': '64', 'type': 'expression_statement', 'children': ['65']}, {'id': '65', 'type': 'call', 'children': ['66', '69']}; {'id': '66', 'type': 'attribute', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'update'}, {'id': '69', 'type': 'argument_list', 'children': ['70']}; {'id': '70', 'type': 'keyword_argument', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '73', 'type': 'if_statement', 'children': ['74', '79']}; {'id': '74', 'type': 'comparison_operator', 'children': ['75', '76'], 'value': 'in'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'direction'}; {'id': '76', 'type': 'tuple', 'children': ['77', '78']}, {'id': '77', 'type': 'string', 'children': [], 'value': "'asc'"}; {'id': '78', 'type': 'string', 'children': [], 'value': "'desc'"}, {'id': '79', 'type': 'block', 'children': ['80']}; {'id': '80', 'type': 'expression_statement', 'children': ['81']}, {'id': '81', 'type': 'call', 'children': ['82', '85']}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'update'}, {'id': '85', 'type': 'argument_list', 'children': ['86']}; {'id': '86', 'type': 'keyword_argument', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'direction'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'direction'}, {'id': '89', 'type': 'return_statement', 'children': ['90']}; {'id': '90', 'type': 'call', 'children': ['91', '94']}, {'id': '91', 'type': 'attribute', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': '_iter'}; {'id': '94', 'type': 'argument_list', 'children': ['95', '99', '100', '101', '102']}, {'id': '95', 'type': 'call', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '97', 'type': 'argument_list', 'children': ['98']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'number'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'Repository'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'params'} | def iter_repos(self, type=None, sort=None, direction=None, number=-1,
etag=None):
url = self._build_url('user', 'repos')
params = {}
if type in ('all', 'owner', 'public', 'private', 'member'):
params.update(type=type)
if sort in ('created', 'updated', 'pushed', 'full_name'):
params.update(sort=sort)
if direction in ('asc', 'desc'):
params.update(direction=direction)
return self._iter(int(number), url, Repository, params, etag) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '21']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'iter_starred'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '18']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'login'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'direction'}, {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'number'}; {'id': '16', 'type': 'unary_operator', 'children': ['17'], 'value': '-'}, {'id': '17', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '18', 'type': 'default_parameter', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'etag'}; {'id': '20', 'type': 'None', 'children': []}, {'id': '21', 'type': 'block', 'children': ['22', '38', '48', '55', '65']}; {'id': '22', 'type': 'if_statement', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'login'}; {'id': '24', 'type': 'block', 'children': ['25']}, {'id': '25', 'type': 'return_statement', 'children': ['26']}; {'id': '26', 'type': 'call', 'children': ['27', '35']}, {'id': '27', 'type': 'attribute', 'children': ['28', '34']}; {'id': '28', 'type': 'call', 'children': ['29', '32']}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '32', 'type': 'argument_list', 'children': ['33']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'login'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'iter_starred'}, {'id': '35', 'type': 'argument_list', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'direction'}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}, {'id': '39', 'type': 'assignment', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '41', 'type': 'dictionary', 'children': ['42', '45']}; {'id': '42', 'type': 'pair', 'children': ['43', '44']}, {'id': '43', 'type': 'string', 'children': [], 'value': "'sort'"}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '45', 'type': 'pair', 'children': ['46', '47']}; {'id': '46', 'type': 'string', 'children': [], 'value': "'direction'"}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'direction'}; {'id': '48', 'type': 'expression_statement', 'children': ['49']}, {'id': '49', 'type': 'call', 'children': ['50', '53']}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': '_remove_none'}, {'id': '53', 'type': 'argument_list', 'children': ['54']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '55', 'type': 'expression_statement', 'children': ['56']}; {'id': '56', 'type': 'assignment', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '58', 'type': 'call', 'children': ['59', '62']}, {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': '_build_url'}; {'id': '62', 'type': 'argument_list', 'children': ['63', '64']}, {'id': '63', 'type': 'string', 'children': [], 'value': "'user'"}; {'id': '64', 'type': 'string', 'children': [], 'value': "'starred'"}, {'id': '65', 'type': 'return_statement', 'children': ['66']}; {'id': '66', 'type': 'call', 'children': ['67', '70']}, {'id': '67', 'type': 'attribute', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': '_iter'}; {'id': '70', 'type': 'argument_list', 'children': ['71', '75', '76', '77', '78']}, {'id': '71', 'type': 'call', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '73', 'type': 'argument_list', 'children': ['74']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'number'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'Repository'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'params'} | def iter_starred(self, login=None, sort=None, direction=None, number=-1,
etag=None):
if login:
return self.user(login).iter_starred(sort, direction)
params = {'sort': sort, 'direction': direction}
self._remove_none(params)
url = self._build_url('user', 'starred')
return self._iter(int(number), url, Repository, params, etag) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '25']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'search_code'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12', '15', '18', '22']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'query'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '8', 'type': 'None', 'children': []}, {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'order'}, {'id': '11', 'type': 'None', 'children': []}; {'id': '12', 'type': 'default_parameter', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'per_page'}; {'id': '14', 'type': 'None', 'children': []}, {'id': '15', 'type': 'default_parameter', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'text_match'}, {'id': '17', 'type': 'False', 'children': []}; {'id': '18', 'type': 'default_parameter', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'number'}; {'id': '20', 'type': 'unary_operator', 'children': ['21'], 'value': '-'}, {'id': '21', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '22', 'type': 'default_parameter', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'etag'}; {'id': '24', 'type': 'None', 'children': []}, {'id': '25', 'type': 'block', 'children': ['26', '33', '37', '48', '63', '73', '83']}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}, {'id': '27', 'type': 'assignment', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '29', 'type': 'dictionary', 'children': ['30']}; {'id': '30', 'type': 'pair', 'children': ['31', '32']}, {'id': '31', 'type': 'string', 'children': [], 'value': "'q'"}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'query'}, {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'assignment', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'headers'}; {'id': '36', 'type': 'dictionary', 'children': []}, {'id': '37', 'type': 'if_statement', 'children': ['38', '41']}; {'id': '38', 'type': 'comparison_operator', 'children': ['39', '40'], 'value': '=='}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '40', 'type': 'string', 'children': [], 'value': "'indexed'"}, {'id': '41', 'type': 'block', 'children': ['42']}; {'id': '42', 'type': 'expression_statement', 'children': ['43']}, {'id': '43', 'type': 'assignment', 'children': ['44', '47']}; {'id': '44', 'type': 'subscript', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '46', 'type': 'string', 'children': [], 'value': "'sort'"}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '48', 'type': 'if_statement', 'children': ['49', '56']}, {'id': '49', 'type': 'boolean_operator', 'children': ['50', '51'], 'value': 'and'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '51', 'type': 'comparison_operator', 'children': ['52', '53'], 'value': 'in'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'order'}, {'id': '53', 'type': 'tuple', 'children': ['54', '55']}; {'id': '54', 'type': 'string', 'children': [], 'value': "'asc'"}, {'id': '55', 'type': 'string', 'children': [], 'value': "'desc'"}; {'id': '56', 'type': 'block', 'children': ['57']}, {'id': '57', 'type': 'expression_statement', 'children': ['58']}; {'id': '58', 'type': 'assignment', 'children': ['59', '62']}, {'id': '59', 'type': 'subscript', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '61', 'type': 'string', 'children': [], 'value': "'order'"}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'order'}, {'id': '63', 'type': 'if_statement', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'text_match'}, {'id': '65', 'type': 'block', 'children': ['66']}; {'id': '66', 'type': 'expression_statement', 'children': ['67']}, {'id': '67', 'type': 'assignment', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'headers'}, {'id': '69', 'type': 'dictionary', 'children': ['70']}; {'id': '70', 'type': 'pair', 'children': ['71', '72']}, {'id': '71', 'type': 'string', 'children': [], 'value': "'Accept'"}; {'id': '72', 'type': 'string', 'children': [], 'value': "'application/vnd.github.v3.full.text-match+json'"}, {'id': '73', 'type': 'expression_statement', 'children': ['74']}; {'id': '74', 'type': 'assignment', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '76', 'type': 'call', 'children': ['77', '80']}, {'id': '77', 'type': 'attribute', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': '_build_url'}; {'id': '80', 'type': 'argument_list', 'children': ['81', '82']}, {'id': '81', 'type': 'string', 'children': [], 'value': "'search'"}; {'id': '82', 'type': 'string', 'children': [], 'value': "'code'"}, {'id': '83', 'type': 'return_statement', 'children': ['84']}; {'id': '84', 'type': 'call', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'SearchIterator'}; {'id': '86', 'type': 'argument_list', 'children': ['87', '88', '89', '90', '91', '92', '93']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'number'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'url'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'CodeSearchResult'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'etag'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'headers'} | def search_code(self, query, sort=None, order=None, per_page=None,
text_match=False, number=-1, etag=None):
params = {'q': query}
headers = {}
if sort == 'indexed':
params['sort'] = sort
if sort and order in ('asc', 'desc'):
params['order'] = order
if text_match:
headers = {
'Accept': 'application/vnd.github.v3.full.text-match+json'
}
url = self._build_url('search', 'code')
return SearchIterator(number, url, CodeSearchResult, self, params,
etag, headers) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '25']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'search_issues'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12', '15', '18', '22']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'query'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '8', 'type': 'None', 'children': []}, {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'order'}, {'id': '11', 'type': 'None', 'children': []}; {'id': '12', 'type': 'default_parameter', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'per_page'}; {'id': '14', 'type': 'None', 'children': []}, {'id': '15', 'type': 'default_parameter', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'text_match'}, {'id': '17', 'type': 'False', 'children': []}; {'id': '18', 'type': 'default_parameter', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'number'}; {'id': '20', 'type': 'unary_operator', 'children': ['21'], 'value': '-'}, {'id': '21', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '22', 'type': 'default_parameter', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'etag'}; {'id': '24', 'type': 'None', 'children': []}, {'id': '25', 'type': 'block', 'children': ['26', '33', '37', '51', '64', '74', '84']}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}, {'id': '27', 'type': 'assignment', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '29', 'type': 'dictionary', 'children': ['30']}; {'id': '30', 'type': 'pair', 'children': ['31', '32']}, {'id': '31', 'type': 'string', 'children': [], 'value': "'q'"}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'query'}, {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'assignment', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'headers'}; {'id': '36', 'type': 'dictionary', 'children': []}, {'id': '37', 'type': 'if_statement', 'children': ['38', '44']}; {'id': '38', 'type': 'comparison_operator', 'children': ['39', '40'], 'value': 'in'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '40', 'type': 'tuple', 'children': ['41', '42', '43']}, {'id': '41', 'type': 'string', 'children': [], 'value': "'comments'"}; {'id': '42', 'type': 'string', 'children': [], 'value': "'created'"}, {'id': '43', 'type': 'string', 'children': [], 'value': "'updated'"}; {'id': '44', 'type': 'block', 'children': ['45']}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'assignment', 'children': ['47', '50']}, {'id': '47', 'type': 'subscript', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '49', 'type': 'string', 'children': [], 'value': "'sort'"}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '51', 'type': 'if_statement', 'children': ['52', '57']}; {'id': '52', 'type': 'comparison_operator', 'children': ['53', '54'], 'value': 'in'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'order'}; {'id': '54', 'type': 'tuple', 'children': ['55', '56']}, {'id': '55', 'type': 'string', 'children': [], 'value': "'asc'"}; {'id': '56', 'type': 'string', 'children': [], 'value': "'desc'"}, {'id': '57', 'type': 'block', 'children': ['58']}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}, {'id': '59', 'type': 'assignment', 'children': ['60', '63']}; {'id': '60', 'type': 'subscript', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '62', 'type': 'string', 'children': [], 'value': "'order'"}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'order'}; {'id': '64', 'type': 'if_statement', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'text_match'}; {'id': '66', 'type': 'block', 'children': ['67']}, {'id': '67', 'type': 'expression_statement', 'children': ['68']}; {'id': '68', 'type': 'assignment', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'headers'}; {'id': '70', 'type': 'dictionary', 'children': ['71']}, {'id': '71', 'type': 'pair', 'children': ['72', '73']}; {'id': '72', 'type': 'string', 'children': [], 'value': "'Accept'"}, {'id': '73', 'type': 'string', 'children': [], 'value': "'application/vnd.github.v3.full.text-match+json'"}; {'id': '74', 'type': 'expression_statement', 'children': ['75']}, {'id': '75', 'type': 'assignment', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'url'}, {'id': '77', 'type': 'call', 'children': ['78', '81']}; {'id': '78', 'type': 'attribute', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': '_build_url'}, {'id': '81', 'type': 'argument_list', 'children': ['82', '83']}; {'id': '82', 'type': 'string', 'children': [], 'value': "'search'"}, {'id': '83', 'type': 'string', 'children': [], 'value': "'issues'"}; {'id': '84', 'type': 'return_statement', 'children': ['85']}, {'id': '85', 'type': 'call', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'SearchIterator'}, {'id': '87', 'type': 'argument_list', 'children': ['88', '89', '90', '91', '92', '93', '94']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'number'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'IssueSearchResult'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'etag'} | def search_issues(self, query, sort=None, order=None, per_page=None,
text_match=False, number=-1, etag=None):
params = {'q': query}
headers = {}
if sort in ('comments', 'created', 'updated'):
params['sort'] = sort
if order in ('asc', 'desc'):
params['order'] = order
if text_match:
headers = {
'Accept': 'application/vnd.github.v3.full.text-match+json'
}
url = self._build_url('search', 'issues')
return SearchIterator(number, url, IssueSearchResult, self, params,
etag, headers) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '25']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'search_users'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12', '15', '18', '22']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'query'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '8', 'type': 'None', 'children': []}, {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'order'}, {'id': '11', 'type': 'None', 'children': []}; {'id': '12', 'type': 'default_parameter', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'per_page'}; {'id': '14', 'type': 'None', 'children': []}, {'id': '15', 'type': 'default_parameter', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'text_match'}, {'id': '17', 'type': 'False', 'children': []}; {'id': '18', 'type': 'default_parameter', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'number'}; {'id': '20', 'type': 'unary_operator', 'children': ['21'], 'value': '-'}, {'id': '21', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '22', 'type': 'default_parameter', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'etag'}; {'id': '24', 'type': 'None', 'children': []}, {'id': '25', 'type': 'block', 'children': ['26', '33', '37', '51', '64', '74', '84']}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}, {'id': '27', 'type': 'assignment', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '29', 'type': 'dictionary', 'children': ['30']}; {'id': '30', 'type': 'pair', 'children': ['31', '32']}, {'id': '31', 'type': 'string', 'children': [], 'value': "'q'"}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'query'}, {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'assignment', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'headers'}; {'id': '36', 'type': 'dictionary', 'children': []}, {'id': '37', 'type': 'if_statement', 'children': ['38', '44']}; {'id': '38', 'type': 'comparison_operator', 'children': ['39', '40'], 'value': 'in'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '40', 'type': 'tuple', 'children': ['41', '42', '43']}, {'id': '41', 'type': 'string', 'children': [], 'value': "'followers'"}; {'id': '42', 'type': 'string', 'children': [], 'value': "'repositories'"}, {'id': '43', 'type': 'string', 'children': [], 'value': "'joined'"}; {'id': '44', 'type': 'block', 'children': ['45']}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'assignment', 'children': ['47', '50']}, {'id': '47', 'type': 'subscript', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '49', 'type': 'string', 'children': [], 'value': "'sort'"}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '51', 'type': 'if_statement', 'children': ['52', '57']}; {'id': '52', 'type': 'comparison_operator', 'children': ['53', '54'], 'value': 'in'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'order'}; {'id': '54', 'type': 'tuple', 'children': ['55', '56']}, {'id': '55', 'type': 'string', 'children': [], 'value': "'asc'"}; {'id': '56', 'type': 'string', 'children': [], 'value': "'desc'"}, {'id': '57', 'type': 'block', 'children': ['58']}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}, {'id': '59', 'type': 'assignment', 'children': ['60', '63']}; {'id': '60', 'type': 'subscript', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '62', 'type': 'string', 'children': [], 'value': "'order'"}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'order'}; {'id': '64', 'type': 'if_statement', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'text_match'}; {'id': '66', 'type': 'block', 'children': ['67']}, {'id': '67', 'type': 'expression_statement', 'children': ['68']}; {'id': '68', 'type': 'assignment', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'headers'}; {'id': '70', 'type': 'dictionary', 'children': ['71']}, {'id': '71', 'type': 'pair', 'children': ['72', '73']}; {'id': '72', 'type': 'string', 'children': [], 'value': "'Accept'"}, {'id': '73', 'type': 'string', 'children': [], 'value': "'application/vnd.github.v3.full.text-match+json'"}; {'id': '74', 'type': 'expression_statement', 'children': ['75']}, {'id': '75', 'type': 'assignment', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'url'}, {'id': '77', 'type': 'call', 'children': ['78', '81']}; {'id': '78', 'type': 'attribute', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': '_build_url'}, {'id': '81', 'type': 'argument_list', 'children': ['82', '83']}; {'id': '82', 'type': 'string', 'children': [], 'value': "'search'"}, {'id': '83', 'type': 'string', 'children': [], 'value': "'users'"}; {'id': '84', 'type': 'return_statement', 'children': ['85']}, {'id': '85', 'type': 'call', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'SearchIterator'}, {'id': '87', 'type': 'argument_list', 'children': ['88', '89', '90', '91', '92', '93', '94']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'number'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'UserSearchResult'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'etag'} | def search_users(self, query, sort=None, order=None, per_page=None,
text_match=False, number=-1, etag=None):
params = {'q': query}
headers = {}
if sort in ('followers', 'repositories', 'joined'):
params['sort'] = sort
if order in ('asc', 'desc'):
params['order'] = order
if text_match:
headers = {
'Accept': 'application/vnd.github.v3.full.text-match+json'
}
url = self._build_url('search', 'users')
return SearchIterator(number, url, UserSearchResult, self, params,
etag, headers) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '18']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'iter_starred'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '15']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'direction'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'number'}, {'id': '13', 'type': 'unary_operator', 'children': ['14'], 'value': '-'}; {'id': '14', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '15', 'type': 'default_parameter', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'etag'}, {'id': '17', 'type': 'None', 'children': []}; {'id': '18', 'type': 'block', 'children': ['19', '26', '36', '43', '59']}, {'id': '19', 'type': 'import_from_statement', 'children': ['20', '24']}; {'id': '20', 'type': 'relative_import', 'children': ['21', '22']}, {'id': '21', 'type': 'import_prefix', 'children': []}; {'id': '22', 'type': 'dotted_name', 'children': ['23']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'repos'}; {'id': '24', 'type': 'dotted_name', 'children': ['25']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'Repository'}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}, {'id': '27', 'type': 'assignment', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '29', 'type': 'dictionary', 'children': ['30', '33']}; {'id': '30', 'type': 'pair', 'children': ['31', '32']}, {'id': '31', 'type': 'string', 'children': [], 'value': "'sort'"}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '33', 'type': 'pair', 'children': ['34', '35']}; {'id': '34', 'type': 'string', 'children': [], 'value': "'direction'"}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'direction'}; {'id': '36', 'type': 'expression_statement', 'children': ['37']}, {'id': '37', 'type': 'call', 'children': ['38', '41']}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': '_remove_none'}, {'id': '41', 'type': 'argument_list', 'children': ['42']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '43', 'type': 'expression_statement', 'children': ['44']}; {'id': '44', 'type': 'assignment', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '46', 'type': 'call', 'children': ['47', '52']}, {'id': '47', 'type': 'attribute', 'children': ['48', '51']}; {'id': '48', 'type': 'attribute', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'starred_urlt'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'expand'}; {'id': '52', 'type': 'argument_list', 'children': ['53', '56']}, {'id': '53', 'type': 'keyword_argument', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'owner'}, {'id': '55', 'type': 'None', 'children': []}; {'id': '56', 'type': 'keyword_argument', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'repo'}; {'id': '58', 'type': 'None', 'children': []}, {'id': '59', 'type': 'return_statement', 'children': ['60']}; {'id': '60', 'type': 'call', 'children': ['61', '64']}, {'id': '61', 'type': 'attribute', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': '_iter'}; {'id': '64', 'type': 'argument_list', 'children': ['65', '69', '70', '71', '72']}, {'id': '65', 'type': 'call', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '67', 'type': 'argument_list', 'children': ['68']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'number'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'Repository'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'params'} | def iter_starred(self, sort=None, direction=None, number=-1, etag=None):
from .repos import Repository
params = {'sort': sort, 'direction': direction}
self._remove_none(params)
url = self.starred_urlt.expand(owner=None, repo=None)
return self._iter(int(number), url, Repository, params, etag) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '15']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'iter_forks'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '12']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '7', 'type': 'string', 'children': [], 'value': "''"}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'number'}; {'id': '10', 'type': 'unary_operator', 'children': ['11'], 'value': '-'}, {'id': '11', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '12', 'type': 'default_parameter', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'etag'}; {'id': '14', 'type': 'None', 'children': []}, {'id': '15', 'type': 'block', 'children': ['16', '30', '34', '49']}; {'id': '16', 'type': 'expression_statement', 'children': ['17']}, {'id': '17', 'type': 'assignment', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'url'}, {'id': '19', 'type': 'call', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': '_build_url'}, {'id': '23', 'type': 'argument_list', 'children': ['24', '25']}; {'id': '24', 'type': 'string', 'children': [], 'value': "'forks'"}, {'id': '25', 'type': 'keyword_argument', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'base_url'}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': '_api'}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}, {'id': '31', 'type': 'assignment', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '33', 'type': 'dictionary', 'children': []}; {'id': '34', 'type': 'if_statement', 'children': ['35', '41']}, {'id': '35', 'type': 'comparison_operator', 'children': ['36', '37'], 'value': 'in'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '37', 'type': 'tuple', 'children': ['38', '39', '40']}; {'id': '38', 'type': 'string', 'children': [], 'value': "'newest'"}, {'id': '39', 'type': 'string', 'children': [], 'value': "'oldest'"}; {'id': '40', 'type': 'string', 'children': [], 'value': "'watchers'"}, {'id': '41', 'type': 'block', 'children': ['42']}; {'id': '42', 'type': 'expression_statement', 'children': ['43']}, {'id': '43', 'type': 'assignment', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '45', 'type': 'dictionary', 'children': ['46']}; {'id': '46', 'type': 'pair', 'children': ['47', '48']}, {'id': '47', 'type': 'string', 'children': [], 'value': "'sort'"}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '49', 'type': 'return_statement', 'children': ['50']}; {'id': '50', 'type': 'call', 'children': ['51', '54']}, {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': '_iter'}; {'id': '54', 'type': 'argument_list', 'children': ['55', '59', '60', '61', '62']}, {'id': '55', 'type': 'call', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '57', 'type': 'argument_list', 'children': ['58']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'number'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'Repository'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'params'} | def iter_forks(self, sort='', number=-1, etag=None):
url = self._build_url('forks', base_url=self._api)
params = {}
if sort in ('newest', 'oldest', 'watchers'):
params = {'sort': sort}
return self._iter(int(number), url, Repository, params, etag) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '36']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'iter_issues'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17', '20', '23', '26', '29', '33']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'milestone'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'state'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'assignee'}, {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'mentioned'}; {'id': '16', 'type': 'None', 'children': []}, {'id': '17', 'type': 'default_parameter', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'labels'}, {'id': '19', 'type': 'None', 'children': []}; {'id': '20', 'type': 'default_parameter', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '22', 'type': 'None', 'children': []}, {'id': '23', 'type': 'default_parameter', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'direction'}, {'id': '25', 'type': 'None', 'children': []}; {'id': '26', 'type': 'default_parameter', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'since'}; {'id': '28', 'type': 'None', 'children': []}, {'id': '29', 'type': 'default_parameter', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'number'}, {'id': '31', 'type': 'unary_operator', 'children': ['32'], 'value': '-'}; {'id': '32', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '33', 'type': 'default_parameter', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'etag'}, {'id': '35', 'type': 'None', 'children': []}; {'id': '36', 'type': 'block', 'children': ['37', '51', '61', '80', '87', '102']}, {'id': '37', 'type': 'expression_statement', 'children': ['38']}; {'id': '38', 'type': 'assignment', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '40', 'type': 'call', 'children': ['41', '44']}, {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': '_build_url'}; {'id': '44', 'type': 'argument_list', 'children': ['45', '46']}, {'id': '45', 'type': 'string', 'children': [], 'value': "'issues'"}; {'id': '46', 'type': 'keyword_argument', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'base_url'}; {'id': '48', 'type': 'attribute', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': '_api'}, {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'assignment', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '54', 'type': 'dictionary', 'children': ['55', '58']}, {'id': '55', 'type': 'pair', 'children': ['56', '57']}; {'id': '56', 'type': 'string', 'children': [], 'value': "'assignee'"}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'assignee'}; {'id': '58', 'type': 'pair', 'children': ['59', '60']}, {'id': '59', 'type': 'string', 'children': [], 'value': "'mentioned'"}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'mentioned'}, {'id': '61', 'type': 'if_statement', 'children': ['62', '73']}; {'id': '62', 'type': 'boolean_operator', 'children': ['63', '68'], 'value': 'or'}, {'id': '63', 'type': 'comparison_operator', 'children': ['64', '65'], 'value': 'in'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'milestone'}, {'id': '65', 'type': 'tuple', 'children': ['66', '67']}; {'id': '66', 'type': 'string', 'children': [], 'value': "'*'"}, {'id': '67', 'type': 'string', 'children': [], 'value': "'none'"}; {'id': '68', 'type': 'call', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '70', 'type': 'argument_list', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'milestone'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '73', 'type': 'block', 'children': ['74']}; {'id': '74', 'type': 'expression_statement', 'children': ['75']}, {'id': '75', 'type': 'assignment', 'children': ['76', '79']}; {'id': '76', 'type': 'subscript', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '78', 'type': 'string', 'children': [], 'value': "'milestone'"}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'milestone'}; {'id': '80', 'type': 'expression_statement', 'children': ['81']}, {'id': '81', 'type': 'call', 'children': ['82', '85']}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': '_remove_none'}, {'id': '85', 'type': 'argument_list', 'children': ['86']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '87', 'type': 'expression_statement', 'children': ['88']}; {'id': '88', 'type': 'call', 'children': ['89', '92']}, {'id': '89', 'type': 'attribute', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'update'}; {'id': '92', 'type': 'argument_list', 'children': ['93']}, {'id': '93', 'type': 'call', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'issue_params'}, {'id': '95', 'type': 'argument_list', 'children': ['96', '97', '98', '99', '100', '101']}; {'id': '96', 'type': 'None', 'children': []}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'state'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'labels'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'direction'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'since'}; {'id': '102', 'type': 'return_statement', 'children': ['103']}, {'id': '103', 'type': 'call', 'children': ['104', '107']}; {'id': '104', 'type': 'attribute', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': '_iter'}, {'id': '107', 'type': 'argument_list', 'children': ['108', '112', '113', '114', '115']}; {'id': '108', 'type': 'call', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '110', 'type': 'argument_list', 'children': ['111']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'number'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'url'}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'Issue'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'etag'} | def iter_issues(self,
milestone=None,
state=None,
assignee=None,
mentioned=None,
labels=None,
sort=None,
direction=None,
since=None,
number=-1,
etag=None):
url = self._build_url('issues', base_url=self._api)
params = {'assignee': assignee, 'mentioned': mentioned}
if milestone in ('*', 'none') or isinstance(milestone, int):
params['milestone'] = milestone
self._remove_none(params)
params.update(
issue_params(None, state, labels, sort, direction,
since)
)
return self._iter(int(number), url, Issue, params, etag) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '21']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'iter_milestones'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '18']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'state'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'direction'}, {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'number'}; {'id': '16', 'type': 'unary_operator', 'children': ['17'], 'value': '-'}, {'id': '17', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '18', 'type': 'default_parameter', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'etag'}; {'id': '20', 'type': 'None', 'children': []}, {'id': '21', 'type': 'block', 'children': ['22', '36', '55', '68', '97', '105']}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}, {'id': '23', 'type': 'assignment', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'url'}, {'id': '25', 'type': 'call', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': '_build_url'}, {'id': '29', 'type': 'argument_list', 'children': ['30', '31']}; {'id': '30', 'type': 'string', 'children': [], 'value': "'milestones'"}, {'id': '31', 'type': 'keyword_argument', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'base_url'}, {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': '_api'}; {'id': '36', 'type': 'expression_statement', 'children': ['37']}, {'id': '37', 'type': 'assignment', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'accepted'}, {'id': '39', 'type': 'dictionary', 'children': ['40', '45', '50']}; {'id': '40', 'type': 'pair', 'children': ['41', '42']}, {'id': '41', 'type': 'string', 'children': [], 'value': "'state'"}; {'id': '42', 'type': 'tuple', 'children': ['43', '44']}, {'id': '43', 'type': 'string', 'children': [], 'value': "'open'"}; {'id': '44', 'type': 'string', 'children': [], 'value': "'closed'"}, {'id': '45', 'type': 'pair', 'children': ['46', '47']}; {'id': '46', 'type': 'string', 'children': [], 'value': "'sort'"}, {'id': '47', 'type': 'tuple', 'children': ['48', '49']}; {'id': '48', 'type': 'string', 'children': [], 'value': "'due_date'"}, {'id': '49', 'type': 'string', 'children': [], 'value': "'completeness'"}; {'id': '50', 'type': 'pair', 'children': ['51', '52']}, {'id': '51', 'type': 'string', 'children': [], 'value': "'direction'"}; {'id': '52', 'type': 'tuple', 'children': ['53', '54']}, {'id': '53', 'type': 'string', 'children': [], 'value': "'asc'"}; {'id': '54', 'type': 'string', 'children': [], 'value': "'desc'"}, {'id': '55', 'type': 'expression_statement', 'children': ['56']}; {'id': '56', 'type': 'assignment', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '58', 'type': 'dictionary', 'children': ['59', '62', '65']}, {'id': '59', 'type': 'pair', 'children': ['60', '61']}; {'id': '60', 'type': 'string', 'children': [], 'value': "'state'"}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'state'}; {'id': '62', 'type': 'pair', 'children': ['63', '64']}, {'id': '63', 'type': 'string', 'children': [], 'value': "'sort'"}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '65', 'type': 'pair', 'children': ['66', '67']}; {'id': '66', 'type': 'string', 'children': [], 'value': "'direction'"}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'direction'}; {'id': '68', 'type': 'for_statement', 'children': ['69', '72', '80']}, {'id': '69', 'type': 'tuple_pattern', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '72', 'type': 'call', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '74', 'type': 'argument_list', 'children': ['75']}, {'id': '75', 'type': 'call', 'children': ['76', '79']}; {'id': '76', 'type': 'attribute', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '79', 'type': 'argument_list', 'children': []}; {'id': '80', 'type': 'block', 'children': ['81']}, {'id': '81', 'type': 'if_statement', 'children': ['82', '92']}; {'id': '82', 'type': 'not_operator', 'children': ['83']}, {'id': '83', 'type': 'parenthesized_expression', 'children': ['84']}; {'id': '84', 'type': 'boolean_operator', 'children': ['85', '86'], 'value': 'and'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '86', 'type': 'parenthesized_expression', 'children': ['87']}, {'id': '87', 'type': 'comparison_operator', 'children': ['88', '89'], 'value': 'in'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'v'}, {'id': '89', 'type': 'subscript', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'accepted'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'k'}; {'id': '92', 'type': 'block', 'children': ['93']}, {'id': '93', 'type': 'delete_statement', 'children': ['94']}; {'id': '94', 'type': 'subscript', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '97', 'type': 'if_statement', 'children': ['98', '100']}; {'id': '98', 'type': 'not_operator', 'children': ['99']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '100', 'type': 'block', 'children': ['101']}, {'id': '101', 'type': 'expression_statement', 'children': ['102']}; {'id': '102', 'type': 'assignment', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '104', 'type': 'None', 'children': []}, {'id': '105', 'type': 'return_statement', 'children': ['106']}; {'id': '106', 'type': 'call', 'children': ['107', '110']}, {'id': '107', 'type': 'attribute', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': '_iter'}; {'id': '110', 'type': 'argument_list', 'children': ['111', '115', '116', '117', '118']}, {'id': '111', 'type': 'call', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '113', 'type': 'argument_list', 'children': ['114']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'number'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'Milestone'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'params'} | def iter_milestones(self, state=None, sort=None, direction=None,
number=-1, etag=None):
url = self._build_url('milestones', base_url=self._api)
accepted = {'state': ('open', 'closed'),
'sort': ('due_date', 'completeness'),
'direction': ('asc', 'desc')}
params = {'state': state, 'sort': sort, 'direction': direction}
for (k, v) in list(params.items()):
if not (v and (v in accepted[k])):
del params[k]
if not params:
params = None
return self._iter(int(number), url, Milestone, params, etag) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '27']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'iter_pulls'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17', '20', '24']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'state'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'head'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'base'}, {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '16', 'type': 'string', 'children': [], 'value': "'created'"}, {'id': '17', 'type': 'default_parameter', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'direction'}, {'id': '19', 'type': 'string', 'children': [], 'value': "'desc'"}; {'id': '20', 'type': 'default_parameter', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'number'}; {'id': '22', 'type': 'unary_operator', 'children': ['23'], 'value': '-'}, {'id': '23', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '24', 'type': 'default_parameter', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'etag'}; {'id': '26', 'type': 'None', 'children': []}, {'id': '27', 'type': 'block', 'children': ['28', '42', '46', '70', '88', '95']}; {'id': '28', 'type': 'expression_statement', 'children': ['29']}, {'id': '29', 'type': 'assignment', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'url'}, {'id': '31', 'type': 'call', 'children': ['32', '35']}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': '_build_url'}, {'id': '35', 'type': 'argument_list', 'children': ['36', '37']}; {'id': '36', 'type': 'string', 'children': [], 'value': "'pulls'"}, {'id': '37', 'type': 'keyword_argument', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'base_url'}, {'id': '39', 'type': 'attribute', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': '_api'}; {'id': '42', 'type': 'expression_statement', 'children': ['43']}, {'id': '43', 'type': 'assignment', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '45', 'type': 'dictionary', 'children': []}; {'id': '46', 'type': 'if_statement', 'children': ['47', '59']}, {'id': '47', 'type': 'boolean_operator', 'children': ['48', '49'], 'value': 'and'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'state'}, {'id': '49', 'type': 'comparison_operator', 'children': ['50', '55'], 'value': 'in'}; {'id': '50', 'type': 'call', 'children': ['51', '54']}, {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'state'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'lower'}; {'id': '54', 'type': 'argument_list', 'children': []}, {'id': '55', 'type': 'tuple', 'children': ['56', '57', '58']}; {'id': '56', 'type': 'string', 'children': [], 'value': "'all'"}, {'id': '57', 'type': 'string', 'children': [], 'value': "'open'"}; {'id': '58', 'type': 'string', 'children': [], 'value': "'closed'"}, {'id': '59', 'type': 'block', 'children': ['60']}; {'id': '60', 'type': 'expression_statement', 'children': ['61']}, {'id': '61', 'type': 'assignment', 'children': ['62', '65']}; {'id': '62', 'type': 'subscript', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '64', 'type': 'string', 'children': [], 'value': "'state'"}, {'id': '65', 'type': 'call', 'children': ['66', '69']}; {'id': '66', 'type': 'attribute', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'state'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'lower'}, {'id': '69', 'type': 'argument_list', 'children': []}; {'id': '70', 'type': 'expression_statement', 'children': ['71']}, {'id': '71', 'type': 'call', 'children': ['72', '75']}; {'id': '72', 'type': 'attribute', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'update'}, {'id': '75', 'type': 'argument_list', 'children': ['76', '79', '82', '85']}; {'id': '76', 'type': 'keyword_argument', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'head'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'head'}, {'id': '79', 'type': 'keyword_argument', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'base'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'base'}; {'id': '82', 'type': 'keyword_argument', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '85', 'type': 'keyword_argument', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'direction'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'direction'}; {'id': '88', 'type': 'expression_statement', 'children': ['89']}, {'id': '89', 'type': 'call', 'children': ['90', '93']}; {'id': '90', 'type': 'attribute', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': '_remove_none'}, {'id': '93', 'type': 'argument_list', 'children': ['94']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '95', 'type': 'return_statement', 'children': ['96']}; {'id': '96', 'type': 'call', 'children': ['97', '100']}, {'id': '97', 'type': 'attribute', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': '_iter'}; {'id': '100', 'type': 'argument_list', 'children': ['101', '105', '106', '107', '108']}, {'id': '101', 'type': 'call', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '103', 'type': 'argument_list', 'children': ['104']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'number'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'PullRequest'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'params'} | def iter_pulls(self, state=None, head=None, base=None, sort='created',
direction='desc', number=-1, etag=None):
url = self._build_url('pulls', base_url=self._api)
params = {}
if state and state.lower() in ('all', 'open', 'closed'):
params['state'] = state.lower()
params.update(head=head, base=base, sort=sort, direction=direction)
self._remove_none(params)
return self._iter(int(number), url, PullRequest, params, etag) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '21']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'iter_user_repos'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '18']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'login'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'direction'}, {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'number'}; {'id': '16', 'type': 'unary_operator', 'children': ['17'], 'value': '-'}, {'id': '17', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '18', 'type': 'default_parameter', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'etag'}; {'id': '20', 'type': 'None', 'children': []}, {'id': '21', 'type': 'block', 'children': ['22', '37']}; {'id': '22', 'type': 'if_statement', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'login'}; {'id': '24', 'type': 'block', 'children': ['25']}, {'id': '25', 'type': 'return_statement', 'children': ['26']}; {'id': '26', 'type': 'call', 'children': ['27', '30']}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'gh'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'iter_user_repos'}; {'id': '30', 'type': 'argument_list', 'children': ['31', '32', '33', '34', '35', '36']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'login'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'direction'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'number'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'etag'}, {'id': '37', 'type': 'return_statement', 'children': ['38']}; {'id': '38', 'type': 'call', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'iter'}; {'id': '40', 'type': 'argument_list', 'children': ['41']}, {'id': '41', 'type': 'list', 'children': [], 'value': '[]'} | def iter_user_repos(login, type=None, sort=None, direction=None, number=-1,
etag=None):
if login:
return gh.iter_user_repos(login, type, sort, direction, number, etag)
return iter([]) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_descendants'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'attr'}, {'id': '7', 'type': 'string', 'children': [], 'value': '"name"'}; {'id': '8', 'type': 'block', 'children': ['9', '23']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'node2content'}; {'id': '12', 'type': 'call', 'children': ['13', '16']}, {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'get_cached_content'}; {'id': '16', 'type': 'argument_list', 'children': ['17', '20']}, {'id': '17', 'type': 'keyword_argument', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'store_attr'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'attr'}; {'id': '20', 'type': 'keyword_argument', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'container_type'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '23', 'type': 'for_statement', 'children': ['24', '25', '30']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '25', 'type': 'call', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'traverse'}, {'id': '29', 'type': 'argument_list', 'children': []}; {'id': '30', 'type': 'block', 'children': ['31']}, {'id': '31', 'type': 'if_statement', 'children': ['32', '38']}; {'id': '32', 'type': 'not_operator', 'children': ['33']}, {'id': '33', 'type': 'call', 'children': ['34', '37']}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'is_leaf'}, {'id': '37', 'type': 'argument_list', 'children': []}; {'id': '38', 'type': 'block', 'children': ['39']}, {'id': '39', 'type': 'expression_statement', 'children': ['40']}; {'id': '40', 'type': 'call', 'children': ['41', '46']}, {'id': '41', 'type': 'attribute', 'children': ['42', '45']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'children'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '46', 'type': 'argument_list', 'children': ['47']}, {'id': '47', 'type': 'keyword_argument', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '49', 'type': 'lambda', 'children': ['50', '52']}; {'id': '50', 'type': 'lambda_parameters', 'children': ['51']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '52', 'type': 'call', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '54', 'type': 'argument_list', 'children': ['55']}, {'id': '55', 'type': 'call', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '57', 'type': 'argument_list', 'children': ['58']}; {'id': '58', 'type': 'subscript', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'node2content'} | def sort_descendants(self, attr="name"):
node2content = self.get_cached_content(store_attr=attr, container_type=list)
for n in self.traverse():
if not n.is_leaf():
n.children.sort(key=lambda x: str(sorted(node2content[x]))) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'collect_backups'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'location'}; {'id': '6', 'type': 'block', 'children': ['7', '11', '18', '26', '32', '192', '207']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'backups'}; {'id': '10', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '11', 'type': 'expression_statement', 'children': ['12']}; {'id': '12', 'type': 'assignment', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'location'}; {'id': '14', 'type': 'call', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'coerce_location'}; {'id': '16', 'type': 'argument_list', 'children': ['17']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'location'}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}, {'id': '19', 'type': 'call', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'logger'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'info'}, {'id': '23', 'type': 'argument_list', 'children': ['24', '25']}; {'id': '24', 'type': 'string', 'children': [], 'value': '"Scanning %s for backups .."'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'location'}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}, {'id': '27', 'type': 'call', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'location'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'ensure_readable'}, {'id': '31', 'type': 'argument_list', 'children': []}; {'id': '32', 'type': 'for_statement', 'children': ['33', '34', '47']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'entry'}; {'id': '34', 'type': 'call', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'natsort'}; {'id': '36', 'type': 'argument_list', 'children': ['37']}, {'id': '37', 'type': 'call', 'children': ['38', '43']}; {'id': '38', 'type': 'attribute', 'children': ['39', '42']}, {'id': '39', 'type': 'attribute', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'location'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'context'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'list_entries'}, {'id': '43', 'type': 'argument_list', 'children': ['44']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'location'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'directory'}, {'id': '47', 'type': 'block', 'children': ['48', '57']}; {'id': '48', 'type': 'expression_statement', 'children': ['49']}, {'id': '49', 'type': 'assignment', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'match'}, {'id': '51', 'type': 'call', 'children': ['52', '55']}; {'id': '52', 'type': 'attribute', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'TIMESTAMP_PATTERN'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'search'}, {'id': '55', 'type': 'argument_list', 'children': ['56']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'entry'}, {'id': '57', 'type': 'if_statement', 'children': ['58', '59', '182']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'match'}, {'id': '59', 'type': 'block', 'children': ['60']}; {'id': '60', 'type': 'if_statement', 'children': ['61', '80', '89', '119']}, {'id': '61', 'type': 'boolean_operator', 'children': ['62', '65'], 'value': 'and'}; {'id': '62', 'type': 'attribute', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'exclude_list'}, {'id': '65', 'type': 'call', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'any'}, {'id': '67', 'type': 'generator_expression', 'children': ['68', '75']}; {'id': '68', 'type': 'call', 'children': ['69', '72']}, {'id': '69', 'type': 'attribute', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'fnmatch'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'fnmatch'}; {'id': '72', 'type': 'argument_list', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'entry'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '75', 'type': 'for_in_clause', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '77', 'type': 'attribute', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'exclude_list'}; {'id': '80', 'type': 'block', 'children': ['81']}, {'id': '81', 'type': 'expression_statement', 'children': ['82']}; {'id': '82', 'type': 'call', 'children': ['83', '86']}, {'id': '83', 'type': 'attribute', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'logger'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'verbose'}; {'id': '86', 'type': 'argument_list', 'children': ['87', '88']}, {'id': '87', 'type': 'string', 'children': [], 'value': '"Excluded %s (it matched the exclude list)."'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'entry'}, {'id': '89', 'type': 'elif_clause', 'children': ['90', '110']}; {'id': '90', 'type': 'boolean_operator', 'children': ['91', '94'], 'value': 'and'}, {'id': '91', 'type': 'attribute', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'include_list'}; {'id': '94', 'type': 'not_operator', 'children': ['95']}, {'id': '95', 'type': 'call', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'any'}, {'id': '97', 'type': 'generator_expression', 'children': ['98', '105']}; {'id': '98', 'type': 'call', 'children': ['99', '102']}, {'id': '99', 'type': 'attribute', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'fnmatch'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'fnmatch'}; {'id': '102', 'type': 'argument_list', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'entry'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '105', 'type': 'for_in_clause', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '107', 'type': 'attribute', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'include_list'}; {'id': '110', 'type': 'block', 'children': ['111']}, {'id': '111', 'type': 'expression_statement', 'children': ['112']}; {'id': '112', 'type': 'call', 'children': ['113', '116']}, {'id': '113', 'type': 'attribute', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'logger'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'verbose'}; {'id': '116', 'type': 'argument_list', 'children': ['117', '118']}, {'id': '117', 'type': 'string', 'children': [], 'value': '"Excluded %s (it didn\'t match the include list)."'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'entry'}, {'id': '119', 'type': 'else_clause', 'children': ['120']}; {'id': '120', 'type': 'block', 'children': ['121']}, {'id': '121', 'type': 'try_statement', 'children': ['122', '167']}; {'id': '122', 'type': 'block', 'children': ['123']}, {'id': '123', 'type': 'expression_statement', 'children': ['124']}; {'id': '124', 'type': 'call', 'children': ['125', '128']}, {'id': '125', 'type': 'attribute', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'backups'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '128', 'type': 'argument_list', 'children': ['129']}, {'id': '129', 'type': 'call', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'Backup'}, {'id': '131', 'type': 'argument_list', 'children': ['132', '145']}; {'id': '132', 'type': 'keyword_argument', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'pathname'}; {'id': '134', 'type': 'call', 'children': ['135', '140']}, {'id': '135', 'type': 'attribute', 'children': ['136', '139']}; {'id': '136', 'type': 'attribute', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '140', 'type': 'argument_list', 'children': ['141', '144']}, {'id': '141', 'type': 'attribute', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'location'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'directory'}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'entry'}, {'id': '145', 'type': 'keyword_argument', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'timestamp'}, {'id': '147', 'type': 'call', 'children': ['148', '151']}; {'id': '148', 'type': 'attribute', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'datetime'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'datetime'}, {'id': '151', 'type': 'argument_list', 'children': ['152']}; {'id': '152', 'type': 'list_splat', 'children': ['153']}, {'id': '153', 'type': 'generator_expression', 'children': ['154', '159']}; {'id': '154', 'type': 'call', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '156', 'type': 'argument_list', 'children': ['157', '158']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'group'}; {'id': '158', 'type': 'integer', 'children': [], 'value': '10'}, {'id': '159', 'type': 'for_in_clause', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'group'}, {'id': '161', 'type': 'call', 'children': ['162', '165']}; {'id': '162', 'type': 'attribute', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'match'}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'groups'}, {'id': '165', 'type': 'argument_list', 'children': ['166']}; {'id': '166', 'type': 'string', 'children': [], 'value': "'0'"}, {'id': '167', 'type': 'except_clause', 'children': ['168', '172']}; {'id': '168', 'type': 'as_pattern', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '170', 'type': 'as_pattern_target', 'children': ['171']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '172', 'type': 'block', 'children': ['173']}, {'id': '173', 'type': 'expression_statement', 'children': ['174']}; {'id': '174', 'type': 'call', 'children': ['175', '178']}, {'id': '175', 'type': 'attribute', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'logger'}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'notice'}; {'id': '178', 'type': 'argument_list', 'children': ['179', '180', '181']}, {'id': '179', 'type': 'string', 'children': [], 'value': '"Ignoring %s due to invalid date (%s)."'}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'entry'}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'e'}; {'id': '182', 'type': 'else_clause', 'children': ['183']}, {'id': '183', 'type': 'block', 'children': ['184']}; {'id': '184', 'type': 'expression_statement', 'children': ['185']}, {'id': '185', 'type': 'call', 'children': ['186', '189']}; {'id': '186', 'type': 'attribute', 'children': ['187', '188']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'logger'}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'debug'}, {'id': '189', 'type': 'argument_list', 'children': ['190', '191']}; {'id': '190', 'type': 'string', 'children': [], 'value': '"Failed to match time stamp in filename: %s"'}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'entry'}; {'id': '192', 'type': 'if_statement', 'children': ['193', '194']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'backups'}; {'id': '194', 'type': 'block', 'children': ['195']}, {'id': '195', 'type': 'expression_statement', 'children': ['196']}; {'id': '196', 'type': 'call', 'children': ['197', '200']}, {'id': '197', 'type': 'attribute', 'children': ['198', '199']}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'logger'}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'info'}; {'id': '200', 'type': 'argument_list', 'children': ['201', '202', '206']}, {'id': '201', 'type': 'string', 'children': [], 'value': '"Found %i timestamped backups in %s."'}; {'id': '202', 'type': 'call', 'children': ['203', '204']}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '204', 'type': 'argument_list', 'children': ['205']}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'backups'}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'location'}, {'id': '207', 'type': 'return_statement', 'children': ['208']}; {'id': '208', 'type': 'call', 'children': ['209', '210']}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '210', 'type': 'argument_list', 'children': ['211']}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'backups'} | def collect_backups(self, location):
backups = []
location = coerce_location(location)
logger.info("Scanning %s for backups ..", location)
location.ensure_readable()
for entry in natsort(location.context.list_entries(location.directory)):
match = TIMESTAMP_PATTERN.search(entry)
if match:
if self.exclude_list and any(fnmatch.fnmatch(entry, p) for p in self.exclude_list):
logger.verbose("Excluded %s (it matched the exclude list).", entry)
elif self.include_list and not any(fnmatch.fnmatch(entry, p) for p in self.include_list):
logger.verbose("Excluded %s (it didn't match the include list).", entry)
else:
try:
backups.append(Backup(
pathname=os.path.join(location.directory, entry),
timestamp=datetime.datetime(*(int(group, 10) for group in match.groups('0'))),
))
except ValueError as e:
logger.notice("Ignoring %s due to invalid date (%s).", entry, e)
else:
logger.debug("Failed to match time stamp in filename: %s", entry)
if backups:
logger.info("Found %i timestamped backups in %s.", len(backups), location)
return sorted(backups) |
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{'id': '16', 'type': 'attribute', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'run_bwa'}, {'id': '19', 'type': 'block', 'children': ['20']}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'get_bam'}, {'id': '23', 'type': 'call', 'children': ['24', '39']}; {'id': '24', 'type': 'attribute', 'children': ['25', '38']}, {'id': '25', 'type': 'call', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'wrapJobFn'}, {'id': '29', 'type': 'argument_list', 'children': ['30', '31', '32', '33', '34', '35']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'setup_and_run_bwakit'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'uuid'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'url'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'rg_line'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'config'}, {'id': '35', 'type': 'keyword_argument', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'paired_url'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'paired_url'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'encapsulate'}, {'id': '39', 'type': 'argument_list', 'children': []}; {'id': '40', 'type': 'elif_clause', 'children': ['41', '48']}, {'id': '41', 'type': 'comparison_operator', 'children': ['42', '43'], 'value': 'in'}; {'id': '42', 'type': 'string', 'children': [], 'value': "'.bam'"}, {'id': '43', 'type': 'call', 'children': ['44', '47']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'lower'}, {'id': '47', 'type': 'argument_list', 'children': []}; {'id': '48', 'type': 'block', 'children': ['49', '60']}, {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'call', 'children': ['51', '56']}, {'id': '51', 'type': 'attribute', 'children': ['52', '55']}; {'id': '52', 'type': 'attribute', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'fileStore'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'logToMaster'}; {'id': '56', 'type': 'argument_list', 'children': ['57']}, {'id': '57', 'type': 'binary_operator', 'children': ['58', '59'], 'value': '%'}; {'id': '58', 'type': 'string', 'children': [], 'value': '"Downloading BAM: %s"'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'uuid'}; {'id': '60', 'type': 'expression_statement', 'children': ['61']}, {'id': '61', 'type': 'assignment', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'get_bam'}, {'id': '63', 'type': 'call', 'children': ['64', '86']}; {'id': '64', 'type': 'attribute', 'children': ['65', '85']}, {'id': '65', 'type': 'call', 'children': ['66', '69']}; {'id': '66', 'type': 'attribute', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'wrapJobFn'}, {'id': '69', 'type': 'argument_list', 'children': ['70', '71', '72', '75', '80']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'download_url_job'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '72', 'type': 'keyword_argument', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '74', 'type': 'string', 'children': [], 'value': "'toil.bam'"}, {'id': '75', 'type': 'keyword_argument', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 's3_key_path'}, {'id': '77', 'type': 'attribute', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'config'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'ssec'}; {'id': '80', 'type': 'keyword_argument', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'disk'}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'file_size'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'encapsulate'}; {'id': '86', 'type': 'argument_list', 'children': []}, {'id': '87', 'type': 'else_clause', 'children': ['88']}; {'id': '88', 'type': 'block', 'children': ['89']}, {'id': '89', 'type': 'raise_statement', 'children': ['90']}; {'id': '90', 'type': 'call', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '92', 'type': 'argument_list', 'children': ['93']}, {'id': '93', 'type': 'binary_operator', 'children': ['94', '98'], 'value': '%'}; {'id': '94', 'type': 'concatenated_string', 'children': ['95', '96', '97']}, {'id': '95', 'type': 'string', 'children': [], 'value': "'Could not generate BAM file for %s\\n'"}; {'id': '96', 'type': 'string', 'children': [], 'value': "'Provide a FASTQ URL and set run-bwa or '"}, {'id': '97', 'type': 'string', 'children': [], 'value': "'provide a BAM URL that includes .bam extension.'"}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'uuid'}, {'id': '99', 'type': 'if_statement', 'children': ['100', '108', '113']}; {'id': '100', 'type': 'boolean_operator', 'children': ['101', '104'], 'value': 'and'}, {'id': '101', 'type': 'attribute', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'config'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '104', 'type': 'not_operator', 'children': ['105']}, {'id': '105', 'type': 'attribute', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'config'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'run_bwa'}; {'id': '108', 'type': 'block', 'children': ['109']}, {'id': '109', 'type': 'expression_statement', 'children': ['110']}; {'id': '110', 'type': 'assignment', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'sorted_bam'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'get_bam'}, {'id': '113', 'type': 'else_clause', 'children': ['114']}; {'id': '114', 'type': 'block', 'children': ['115', '134']}, {'id': '115', 'type': 'expression_statement', 'children': ['116']}; {'id': '116', 'type': 'assignment', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'sorted_bam_disk'}; {'id': '118', 'type': 'call', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'PromisedRequirement'}; {'id': '120', 'type': 'argument_list', 'children': ['121', '129']}, {'id': '121', 'type': 'lambda', 'children': ['122', '124']}; {'id': '122', 'type': 'lambda_parameters', 'children': ['123']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'bam'}; {'id': '124', 'type': 'binary_operator', 'children': ['125', '126'], 'value': '*'}, {'id': '125', 'type': 'integer', 'children': [], 'value': '3'}; {'id': '126', 'type': 'attribute', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'bam'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'size'}, {'id': '129', 'type': 'call', 'children': ['130', '133']}; {'id': '130', 'type': 'attribute', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'get_bam'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'rv'}, {'id': '133', 'type': 'argument_list', 'children': []}; {'id': '134', 'type': 'expression_statement', 'children': ['135']}, {'id': '135', 'type': 'assignment', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'sorted_bam'}, {'id': '137', 'type': 'call', 'children': ['138', '141']}; {'id': '138', 'type': 'attribute', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'get_bam'}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'addChildJobFn'}, {'id': '141', 'type': 'argument_list', 'children': ['142', '143', '148', '153']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'run_samtools_sort'}, {'id': '143', 'type': 'call', 'children': ['144', '147']}; {'id': '144', 'type': 'attribute', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'get_bam'}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'rv'}, {'id': '147', 'type': 'argument_list', 'children': []}; {'id': '148', 'type': 'keyword_argument', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'cores'}; {'id': '150', 'type': 'attribute', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'cores'}, {'id': '153', 'type': 'keyword_argument', 'children': ['154', '155']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'disk'}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'sorted_bam_disk'}; {'id': '156', 'type': 'expression_statement', 'children': ['157']}, {'id': '157', 'type': 'assignment', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'index_bam_disk'}, {'id': '159', 'type': 'call', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'PromisedRequirement'}, {'id': '161', 'type': 'argument_list', 'children': ['162', '168']}; {'id': '162', 'type': 'lambda', 'children': ['163', '165']}, {'id': '163', 'type': 'lambda_parameters', 'children': ['164']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'bam'}, {'id': '165', 'type': 'attribute', 'children': ['166', '167']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'bam'}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'size'}; {'id': '168', 'type': 'call', 'children': ['169', '172']}, {'id': '169', 'type': 'attribute', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'sorted_bam'}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'rv'}; {'id': '172', 'type': 'argument_list', 'children': []}, {'id': '173', 'type': 'expression_statement', 'children': ['174']}; {'id': '174', 'type': 'assignment', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'index_bam'}; {'id': '176', 'type': 'call', 'children': ['177', '180']}, {'id': '177', 'type': 'attribute', 'children': ['178', '179']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'wrapJobFn'}; {'id': '180', 'type': 'argument_list', 'children': ['181', '182', '187']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'run_samtools_index'}; {'id': '182', 'type': 'call', 'children': ['183', '186']}, {'id': '183', 'type': 'attribute', 'children': ['184', '185']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'sorted_bam'}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'rv'}; {'id': '186', 'type': 'argument_list', 'children': []}, {'id': '187', 'type': 'keyword_argument', 'children': ['188', '189']}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'disk'}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'index_bam_disk'}; {'id': '190', 'type': 'expression_statement', 'children': ['191']}, {'id': '191', 'type': 'call', 'children': ['192', '195']}; {'id': '192', 'type': 'attribute', 'children': ['193', '194']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'addChild'}, {'id': '195', 'type': 'argument_list', 'children': ['196']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'get_bam'}, {'id': '197', 'type': 'expression_statement', 'children': ['198']}; {'id': '198', 'type': 'call', 'children': ['199', '202']}, {'id': '199', 'type': 'attribute', 'children': ['200', '201']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'sorted_bam'}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'addChild'}; {'id': '202', 'type': 'argument_list', 'children': ['203']}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'index_bam'}; {'id': '204', 'type': 'if_statement', 'children': ['205', '208', '347']}, {'id': '205', 'type': 'attribute', 'children': ['206', '207']}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'config'}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'preprocess'}; {'id': '208', 'type': 'block', 'children': ['209', '260', '267', '274', '283', '292', '306', '318', '340']}, {'id': '209', 'type': 'expression_statement', 'children': ['210']}; {'id': '210', 'type': 'assignment', 'children': ['211', '212']}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'preprocess'}; {'id': '212', 'type': 'call', 'children': ['213', '259']}, {'id': '213', 'type': 'attribute', 'children': ['214', '258']}; {'id': '214', 'type': 'call', 'children': ['215', '218']}, {'id': '215', 'type': 'attribute', 'children': ['216', '217']}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'wrapJobFn'}; {'id': '218', 'type': 'argument_list', 'children': ['219', '220', '225', '230', '233', '236', '239', '242', '245', '248', '253']}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'run_gatk_preprocessing'}; {'id': '220', 'type': 'call', 'children': ['221', '224']}, {'id': '221', 'type': 'attribute', 'children': ['222', '223']}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'sorted_bam'}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'rv'}; {'id': '224', 'type': 'argument_list', 'children': []}, {'id': '225', 'type': 'call', 'children': ['226', '229']}; {'id': '226', 'type': 'attribute', 'children': ['227', '228']}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'index_bam'}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'rv'}, {'id': '229', 'type': 'argument_list', 'children': []}; {'id': '230', 'type': 'attribute', 'children': ['231', '232']}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'genome_fasta'}, {'id': '233', 'type': 'attribute', 'children': ['234', '235']}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'config'}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'genome_dict'}; {'id': '236', 'type': 'attribute', 'children': ['237', '238']}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'genome_fai'}, {'id': '239', 'type': 'attribute', 'children': ['240', '241']}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'config'}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'g1k_indel'}; {'id': '242', 'type': 'attribute', 'children': ['243', '244']}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'mills'}, {'id': '245', 'type': 'attribute', 'children': ['246', '247']}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'config'}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'dbsnp'}; {'id': '248', 'type': 'keyword_argument', 'children': ['249', '250']}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'memory'}; {'id': '250', 'type': 'attribute', 'children': ['251', '252']}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'xmx'}, {'id': '253', 'type': 'keyword_argument', 'children': ['254', '255']}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'cores'}, {'id': '255', 'type': 'attribute', 'children': ['256', '257']}; {'id': '256', 'type': 'identifier', 'children': [], 'value': 'config'}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'cores'}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'encapsulate'}, {'id': '259', 'type': 'argument_list', 'children': []}; {'id': '260', 'type': 'expression_statement', 'children': ['261']}, {'id': '261', 'type': 'call', 'children': ['262', '265']}; {'id': '262', 'type': 'attribute', 'children': ['263', '264']}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'sorted_bam'}; {'id': '264', 'type': 'identifier', 'children': [], 'value': 'addChild'}, {'id': '265', 'type': 'argument_list', 'children': ['266']}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'preprocess'}, {'id': '267', 'type': 'expression_statement', 'children': ['268']}; {'id': '268', 'type': 'call', 'children': ['269', '272']}, {'id': '269', 'type': 'attribute', 'children': ['270', '271']}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'index_bam'}, {'id': '271', 'type': 'identifier', 'children': [], 'value': 'addChild'}; {'id': '272', 'type': 'argument_list', 'children': ['273']}, {'id': '273', 'type': 'identifier', 'children': [], 'value': 'preprocess'}; {'id': '274', 'type': 'expression_statement', 'children': ['275']}, {'id': '275', 'type': 'assignment', 'children': ['276', '277']}; {'id': '276', 'type': 'identifier', 'children': [], 'value': 'output_bam_promise'}, {'id': '277', 'type': 'call', 'children': ['278', '281']}; {'id': '278', 'type': 'attribute', 'children': ['279', '280']}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'preprocess'}; {'id': '280', 'type': 'identifier', 'children': [], 'value': 'rv'}, {'id': '281', 'type': 'argument_list', 'children': ['282']}; {'id': '282', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '283', 'type': 'expression_statement', 'children': ['284']}; {'id': '284', 'type': 'assignment', 'children': ['285', '286']}, {'id': '285', 'type': 'identifier', 'children': [], 'value': 'output_bai_promise'}; {'id': '286', 'type': 'call', 'children': ['287', '290']}, {'id': '287', 'type': 'attribute', 'children': ['288', '289']}; {'id': '288', 'type': 'identifier', 'children': [], 'value': 'preprocess'}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'rv'}; {'id': '290', 'type': 'argument_list', 'children': ['291']}, {'id': '291', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '292', 'type': 'expression_statement', 'children': ['293']}, {'id': '293', 'type': 'assignment', 'children': ['294', '295']}; {'id': '294', 'type': 'identifier', 'children': [], 'value': 'output_dir'}, {'id': '295', 'type': 'call', 'children': ['296', '301']}; {'id': '296', 'type': 'attribute', 'children': ['297', '300']}, {'id': '297', 'type': 'attribute', 'children': ['298', '299']}; {'id': '298', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '299', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '300', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '301', 'type': 'argument_list', 'children': ['302', '305']}; {'id': '302', 'type': 'attribute', 'children': ['303', '304']}, {'id': '303', 'type': 'identifier', 'children': [], 'value': 'config'}; {'id': '304', 'type': 'identifier', 'children': [], 'value': 'output_dir'}, {'id': '305', 'type': 'identifier', 'children': [], 'value': 'uuid'}; {'id': '306', 'type': 'expression_statement', 'children': ['307']}, {'id': '307', 'type': 'assignment', 'children': ['308', '309']}; {'id': '308', 'type': 'identifier', 'children': [], 'value': 'filename'}, {'id': '309', 'type': 'call', 'children': ['310', '313']}; {'id': '310', 'type': 'attribute', 'children': ['311', '312']}, {'id': '311', 'type': 'string', 'children': [], 'value': "'{}.preprocessed{}.bam'"}; {'id': '312', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '313', 'type': 'argument_list', 'children': ['314', '315']}; {'id': '314', 'type': 'identifier', 'children': [], 'value': 'uuid'}, {'id': '315', 'type': 'attribute', 'children': ['316', '317']}; {'id': '316', 'type': 'identifier', 'children': [], 'value': 'config'}, {'id': '317', 'type': 'identifier', 'children': [], 'value': 'suffix'}; {'id': '318', 'type': 'expression_statement', 'children': ['319']}, {'id': '319', 'type': 'assignment', 'children': ['320', '321']}; {'id': '320', 'type': 'identifier', 'children': [], 'value': 'output_bam'}, {'id': '321', 'type': 'call', 'children': ['322', '325']}; {'id': '322', 'type': 'attribute', 'children': ['323', '324']}, {'id': '323', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '324', 'type': 'identifier', 'children': [], 'value': 'wrapJobFn'}, {'id': '325', 'type': 'argument_list', 'children': ['326', '327', '328', '334', '335']}; {'id': '326', 'type': 'identifier', 'children': [], 'value': 'output_file_job'}, {'id': '327', 'type': 'identifier', 'children': [], 'value': 'filename'}; {'id': '328', 'type': 'call', 'children': ['329', '332']}, {'id': '329', 'type': 'attribute', 'children': ['330', '331']}; {'id': '330', 'type': 'identifier', 'children': [], 'value': 'preprocess'}, {'id': '331', 'type': 'identifier', 'children': [], 'value': 'rv'}; {'id': '332', 'type': 'argument_list', 'children': ['333']}, {'id': '333', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '334', 'type': 'identifier', 'children': [], 'value': 'output_dir'}, {'id': '335', 'type': 'keyword_argument', 'children': ['336', '337']}; {'id': '336', 'type': 'identifier', 'children': [], 'value': 's3_key_path'}, {'id': '337', 'type': 'attribute', 'children': ['338', '339']}; {'id': '338', 'type': 'identifier', 'children': [], 'value': 'config'}, {'id': '339', 'type': 'identifier', 'children': [], 'value': 'ssec'}; {'id': '340', 'type': 'expression_statement', 'children': ['341']}, {'id': '341', 'type': 'call', 'children': ['342', '345']}; {'id': '342', 'type': 'attribute', 'children': ['343', '344']}, {'id': '343', 'type': 'identifier', 'children': [], 'value': 'preprocess'}; {'id': '344', 'type': 'identifier', 'children': [], 'value': 'addChild'}, {'id': '345', 'type': 'argument_list', 'children': ['346']}; {'id': '346', 'type': 'identifier', 'children': [], 'value': 'output_bam'}, {'id': '347', 'type': 'else_clause', 'children': ['348']}; {'id': '348', 'type': 'block', 'children': ['349', '357']}, {'id': '349', 'type': 'expression_statement', 'children': ['350']}; {'id': '350', 'type': 'assignment', 'children': ['351', '352']}, {'id': '351', 'type': 'identifier', 'children': [], 'value': 'output_bam_promise'}; {'id': '352', 'type': 'call', 'children': ['353', '356']}, {'id': '353', 'type': 'attribute', 'children': ['354', '355']}; {'id': '354', 'type': 'identifier', 'children': [], 'value': 'sorted_bam'}, {'id': '355', 'type': 'identifier', 'children': [], 'value': 'rv'}; {'id': '356', 'type': 'argument_list', 'children': []}, {'id': '357', 'type': 'expression_statement', 'children': ['358']}; {'id': '358', 'type': 'assignment', 'children': ['359', '360']}, {'id': '359', 'type': 'identifier', 'children': [], 'value': 'output_bai_promise'}; {'id': '360', 'type': 'call', 'children': ['361', '364']}, {'id': '361', 'type': 'attribute', 'children': ['362', '363']}; {'id': '362', 'type': 'identifier', 'children': [], 'value': 'index_bam'}, {'id': '363', 'type': 'identifier', 'children': [], 'value': 'rv'}; {'id': '364', 'type': 'argument_list', 'children': []}, {'id': '365', 'type': 'return_statement', 'children': ['366']}; {'id': '366', 'type': 'expression_list', 'children': ['367', '368']}, {'id': '367', 'type': 'identifier', 'children': [], 'value': 'output_bam_promise'} | def prepare_bam(job, uuid, url, config, paired_url=None, rg_line=None):
if config.run_bwa:
get_bam = job.wrapJobFn(setup_and_run_bwakit,
uuid,
url,
rg_line,
config,
paired_url=paired_url).encapsulate()
elif '.bam' in url.lower():
job.fileStore.logToMaster("Downloading BAM: %s" % uuid)
get_bam = job.wrapJobFn(download_url_job,
url,
name='toil.bam',
s3_key_path=config.ssec,
disk=config.file_size).encapsulate()
else:
raise ValueError('Could not generate BAM file for %s\n'
'Provide a FASTQ URL and set run-bwa or '
'provide a BAM URL that includes .bam extension.' % uuid)
if config.sorted and not config.run_bwa:
sorted_bam = get_bam
else:
sorted_bam_disk = PromisedRequirement(lambda bam: 3 * bam.size, get_bam.rv())
sorted_bam = get_bam.addChildJobFn(run_samtools_sort,
get_bam.rv(),
cores=config.cores,
disk=sorted_bam_disk)
index_bam_disk = PromisedRequirement(lambda bam: bam.size, sorted_bam.rv())
index_bam = job.wrapJobFn(run_samtools_index, sorted_bam.rv(), disk=index_bam_disk)
job.addChild(get_bam)
sorted_bam.addChild(index_bam)
if config.preprocess:
preprocess = job.wrapJobFn(run_gatk_preprocessing,
sorted_bam.rv(),
index_bam.rv(),
config.genome_fasta,
config.genome_dict,
config.genome_fai,
config.g1k_indel,
config.mills,
config.dbsnp,
memory=config.xmx,
cores=config.cores).encapsulate()
sorted_bam.addChild(preprocess)
index_bam.addChild(preprocess)
output_bam_promise = preprocess.rv(0)
output_bai_promise = preprocess.rv(1)
output_dir = os.path.join(config.output_dir, uuid)
filename = '{}.preprocessed{}.bam'.format(uuid, config.suffix)
output_bam = job.wrapJobFn(output_file_job,
filename,
preprocess.rv(0),
output_dir,
s3_key_path=config.ssec)
preprocess.addChild(output_bam)
else:
output_bam_promise = sorted_bam.rv()
output_bai_promise = index_bam.rv()
return output_bam_promise, output_bai_promise |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'alignment'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'ids'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'input_args'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'sample'}; {'id': '8', 'type': 'block', 'children': ['9', '15', '25', '31', '37', '45', '59', '78', '92', '137', '168', '202', '236', '259', '283']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '14']}, {'id': '11', 'type': 'pattern_list', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'uuid'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'urls'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'sample'}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'work_dir'}; {'id': '18', 'type': 'call', 'children': ['19', '24']}, {'id': '19', 'type': 'attribute', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'fileStore'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'getLocalTempDir'}; {'id': '24', 'type': 'argument_list', 'children': []}, {'id': '25', 'type': 'expression_statement', 'children': ['26']}; {'id': '26', 'type': 'assignment', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'output_dir'}; {'id': '28', 'type': 'subscript', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'input_args'}; {'id': '30', 'type': 'string', 'children': [], 'value': "'output_dir'"}, {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'assignment', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'key_path'}; {'id': '34', 'type': 'subscript', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'input_args'}; {'id': '36', 'type': 'string', 'children': [], 'value': "'ssec'"}, {'id': '37', 'type': 'expression_statement', 'children': ['38']}; {'id': '38', 'type': 'assignment', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'cores'}; {'id': '40', 'type': 'call', 'children': ['41', '44']}, {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'multiprocessing'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'cpu_count'}; {'id': '44', 'type': 'argument_list', 'children': []}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'call', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'return_input_paths'}; {'id': '48', 'type': 'argument_list', 'children': ['49', '50', '51', '52', '53', '54', '55', '56', '57', '58']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'work_dir'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'ids'}; {'id': '52', 'type': 'string', 'children': [], 'value': "'ref.fa'"}, {'id': '53', 'type': 'string', 'children': [], 'value': "'ref.fa.amb'"}; {'id': '54', 'type': 'string', 'children': [], 'value': "'ref.fa.ann'"}, {'id': '55', 'type': 'string', 'children': [], 'value': "'ref.fa.bwt'"}; {'id': '56', 'type': 'string', 'children': [], 'value': "'ref.fa.pac'"}, {'id': '57', 'type': 'string', 'children': [], 'value': "'ref.fa.sa'"}; {'id': '58', 'type': 'string', 'children': [], 'value': "'ref.fa.fai'"}, {'id': '59', 'type': 'for_statement', 'children': ['60', '61', '62']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'url'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'urls'}; {'id': '62', 'type': 'block', 'children': ['63']}, {'id': '63', 'type': 'expression_statement', 'children': ['64']}; {'id': '64', 'type': 'call', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'download_encrypted_file'}; {'id': '66', 'type': 'argument_list', 'children': ['67', '68', '69', '70']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'work_dir'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'url'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'key_path'}; {'id': '70', 'type': 'call', 'children': ['71', '76']}, {'id': '71', 'type': 'attribute', 'children': ['72', '75']}; {'id': '72', 'type': 'attribute', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'basename'}; {'id': '76', 'type': 'argument_list', 'children': ['77']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'url'}; {'id': '78', 'type': 'expression_statement', 'children': ['79']}, {'id': '79', 'type': 'assignment', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'docker_cmd'}, {'id': '81', 'type': 'list', 'children': ['82', '83', '84', '85', '86'], 'value': "['docker', 'run', '--rm', '-v', '{}:/data'.format(work_dir)]"}; {'id': '82', 'type': 'string', 'children': [], 'value': "'docker'"}, {'id': '83', 'type': 'string', 'children': [], 'value': "'run'"}; {'id': '84', 'type': 'string', 'children': [], 'value': "'--rm'"}, {'id': '85', 'type': 'string', 'children': [], 'value': "'-v'"}; {'id': '86', 'type': 'call', 'children': ['87', '90']}, {'id': '87', 'type': 'attribute', 'children': ['88', '89']}; {'id': '88', 'type': 'string', 'children': [], 'value': "'{}:/data'"}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '90', 'type': 'argument_list', 'children': ['91']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'work_dir'}; {'id': '92', 'type': 'expression_statement', 'children': ['93']}, {'id': '93', 'type': 'assignment', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'bwa_command'}, {'id': '95', 'type': 'binary_operator', 'children': ['96', '117'], 'value': '+'}; {'id': '96', 'type': 'list', 'children': ['97', '98', '99', '100', '106', '107', '111', '112', '116'], 'value': '["jvivian/bwa",\n "mem",\n "-R", "@RG\\tID:{0}\\tPL:Illumina\\tSM:{0}\\tLB:KapaHyper".format(uuid),\n "-T", str(0),\n "-t", str(cores),\n "/data/ref.fa"]'}, {'id': '97', 'type': 'string', 'children': [], 'value': '"jvivian/bwa"'}; {'id': '98', 'type': 'string', 'children': [], 'value': '"mem"'}, {'id': '99', 'type': 'string', 'children': [], 'value': '"-R"'}; {'id': '100', 'type': 'call', 'children': ['101', '104']}, {'id': '101', 'type': 'attribute', 'children': ['102', '103']}; {'id': '102', 'type': 'string', 'children': [], 'value': '"@RG\\tID:{0}\\tPL:Illumina\\tSM:{0}\\tLB:KapaHyper"'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '104', 'type': 'argument_list', 'children': ['105']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'uuid'}; {'id': '106', 'type': 'string', 'children': [], 'value': '"-T"'}, {'id': '107', 'type': 'call', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '109', 'type': 'argument_list', 'children': ['110']}; {'id': '110', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '111', 'type': 'string', 'children': [], 'value': '"-t"'}; {'id': '112', 'type': 'call', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '114', 'type': 'argument_list', 'children': ['115']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'cores'}; {'id': '116', 'type': 'string', 'children': [], 'value': '"/data/ref.fa"'}, {'id': '117', 'type': 'list_comprehension', 'children': ['118', '134']}; {'id': '118', 'type': 'call', 'children': ['119', '124']}, {'id': '119', 'type': 'attribute', 'children': ['120', '123']}; {'id': '120', 'type': 'attribute', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '124', 'type': 'argument_list', 'children': ['125', '126']}, {'id': '125', 'type': 'string', 'children': [], 'value': "'/data/'"}; {'id': '126', 'type': 'call', 'children': ['127', '132']}, {'id': '127', 'type': 'attribute', 'children': ['128', '131']}; {'id': '128', 'type': 'attribute', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'basename'}; {'id': '132', 'type': 'argument_list', 'children': ['133']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '134', 'type': 'for_in_clause', 'children': ['135', '136']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'urls'}, {'id': '137', 'type': 'expression_statement', 'children': ['138']}; {'id': '138', 'type': 'assignment', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'bamsort_command'}; {'id': '140', 'type': 'list', 'children': ['141', '142', '143', '144', '145', '151', '157', '158', '159', '160'], 'value': '["jeltje/biobambam",\n "/usr/local/bin/bamsort",\n "inputformat=sam",\n "level=1",\n "inputthreads={}".format(cores),\n "outputthreads={}".format(cores),\n "calmdnm=1",\n "calmdnmrecompindetonly=1",\n "calmdnmreference=/data/ref.fa",\n "I=/data/{}".format(uuid + \'.sam\')]'}, {'id': '141', 'type': 'string', 'children': [], 'value': '"jeltje/biobambam"'}; {'id': '142', 'type': 'string', 'children': [], 'value': '"/usr/local/bin/bamsort"'}, {'id': '143', 'type': 'string', 'children': [], 'value': '"inputformat=sam"'}; {'id': '144', 'type': 'string', 'children': [], 'value': '"level=1"'}, {'id': '145', 'type': 'call', 'children': ['146', '149']}; {'id': '146', 'type': 'attribute', 'children': ['147', '148']}, {'id': '147', 'type': 'string', 'children': [], 'value': '"inputthreads={}"'}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '149', 'type': 'argument_list', 'children': ['150']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'cores'}, {'id': '151', 'type': 'call', 'children': ['152', '155']}; {'id': '152', 'type': 'attribute', 'children': ['153', '154']}, {'id': '153', 'type': 'string', 'children': [], 'value': '"outputthreads={}"'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '155', 'type': 'argument_list', 'children': ['156']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'cores'}, {'id': '157', 'type': 'string', 'children': [], 'value': '"calmdnm=1"'}; {'id': '158', 'type': 'string', 'children': [], 'value': '"calmdnmrecompindetonly=1"'}, {'id': '159', 'type': 'string', 'children': [], 'value': '"calmdnmreference=/data/ref.fa"'}; {'id': '160', 'type': 'call', 'children': ['161', '164']}, {'id': '161', 'type': 'attribute', 'children': ['162', '163']}; {'id': '162', 'type': 'string', 'children': [], 'value': '"I=/data/{}"'}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '164', 'type': 'argument_list', 'children': ['165']}, {'id': '165', 'type': 'binary_operator', 'children': ['166', '167'], 'value': '+'}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'uuid'}, {'id': '167', 'type': 'string', 'children': [], 'value': "'.sam'"}; {'id': '168', 'type': 'with_statement', 'children': ['169', '189']}, {'id': '169', 'type': 'with_clause', 'children': ['170']}; {'id': '170', 'type': 'with_item', 'children': ['171']}, {'id': '171', 'type': 'as_pattern', 'children': ['172', '187']}; {'id': '172', 'type': 'call', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '174', 'type': 'argument_list', 'children': ['175', '186']}, {'id': '175', 'type': 'call', 'children': ['176', '181']}; {'id': '176', 'type': 'attribute', 'children': ['177', '180']}, {'id': '177', 'type': 'attribute', 'children': ['178', '179']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '181', 'type': 'argument_list', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'work_dir'}, {'id': '183', 'type': 'binary_operator', 'children': ['184', '185'], 'value': '+'}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'uuid'}, {'id': '185', 'type': 'string', 'children': [], 'value': "'.sam'"}; {'id': '186', 'type': 'string', 'children': [], 'value': "'w'"}, {'id': '187', 'type': 'as_pattern_target', 'children': ['188']}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'f_out'}, {'id': '189', 'type': 'block', 'children': ['190']}; {'id': '190', 'type': 'expression_statement', 'children': ['191']}, {'id': '191', 'type': 'call', 'children': ['192', '195']}; {'id': '192', 'type': 'attribute', 'children': ['193', '194']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'subprocess'}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'check_call'}, {'id': '195', 'type': 'argument_list', 'children': ['196', '199']}; {'id': '196', 'type': 'binary_operator', 'children': ['197', '198'], 'value': '+'}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'docker_cmd'}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'bwa_command'}, {'id': '199', 'type': 'keyword_argument', 'children': ['200', '201']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'stdout'}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'f_out'}; {'id': '202', 'type': 'with_statement', 'children': ['203', '223']}, {'id': '203', 'type': 'with_clause', 'children': ['204']}; {'id': '204', 'type': 'with_item', 'children': ['205']}, {'id': '205', 'type': 'as_pattern', 'children': ['206', '221']}; {'id': '206', 'type': 'call', 'children': ['207', '208']}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '208', 'type': 'argument_list', 'children': ['209', '220']}, {'id': '209', 'type': 'call', 'children': ['210', '215']}; {'id': '210', 'type': 'attribute', 'children': ['211', '214']}, {'id': '211', 'type': 'attribute', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '215', 'type': 'argument_list', 'children': ['216', '217']}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'work_dir'}, {'id': '217', 'type': 'binary_operator', 'children': ['218', '219'], 'value': '+'}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'uuid'}, {'id': '219', 'type': 'string', 'children': [], 'value': "'.bam'"}; {'id': '220', 'type': 'string', 'children': [], 'value': "'w'"}, {'id': '221', 'type': 'as_pattern_target', 'children': ['222']}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'f_out'}, {'id': '223', 'type': 'block', 'children': ['224']}; {'id': '224', 'type': 'expression_statement', 'children': ['225']}, {'id': '225', 'type': 'call', 'children': ['226', '229']}; {'id': '226', 'type': 'attribute', 'children': ['227', '228']}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'subprocess'}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'check_call'}, {'id': '229', 'type': 'argument_list', 'children': ['230', '233']}; {'id': '230', 'type': 'binary_operator', 'children': ['231', '232'], 'value': '+'}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'docker_cmd'}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'bamsort_command'}, {'id': '233', 'type': 'keyword_argument', 'children': ['234', '235']}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'stdout'}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'f_out'}; {'id': '236', 'type': 'expression_statement', 'children': ['237']}, {'id': '237', 'type': 'assignment', 'children': ['238', '241']}; {'id': '238', 'type': 'subscript', 'children': ['239', '240']}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'ids'}; {'id': '240', 'type': 'string', 'children': [], 'value': "'bam'"}, {'id': '241', 'type': 'call', 'children': ['242', '247']}; {'id': '242', 'type': 'attribute', 'children': ['243', '246']}, {'id': '243', 'type': 'attribute', 'children': ['244', '245']}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'fileStore'}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'writeGlobalFile'}, {'id': '247', 'type': 'argument_list', 'children': ['248']}; {'id': '248', 'type': 'call', 'children': ['249', '254']}, {'id': '249', 'type': 'attribute', 'children': ['250', '253']}; {'id': '250', 'type': 'attribute', 'children': ['251', '252']}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '254', 'type': 'argument_list', 'children': ['255', '256']}, {'id': '255', 'type': 'identifier', 'children': [], 'value': 'work_dir'}; {'id': '256', 'type': 'binary_operator', 'children': ['257', '258'], 'value': '+'}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'uuid'}; {'id': '258', 'type': 'string', 'children': [], 'value': "'.bam'"}, {'id': '259', 'type': 'if_statement', 'children': ['260', '263']}; {'id': '260', 'type': 'subscript', 'children': ['261', '262']}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'input_args'}; {'id': '262', 'type': 'string', 'children': [], 'value': "'s3_dir'"}, {'id': '263', 'type': 'block', 'children': ['264']}; {'id': '264', 'type': 'expression_statement', 'children': ['265']}, {'id': '265', 'type': 'call', 'children': ['266', '269']}; {'id': '266', 'type': 'attribute', 'children': ['267', '268']}, {'id': '267', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '268', 'type': 'identifier', 'children': [], 'value': 'addChildJobFn'}, {'id': '269', 'type': 'argument_list', 'children': ['270', '271', '272', '273', '274', '277', '280']}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'upload_bam_to_s3'}, {'id': '271', 'type': 'identifier', 'children': [], 'value': 'ids'}; {'id': '272', 'type': 'identifier', 'children': [], 'value': 'input_args'}, {'id': '273', 'type': 'identifier', 'children': [], 'value': 'sample'}; {'id': '274', 'type': 'keyword_argument', 'children': ['275', '276']}, {'id': '275', 'type': 'identifier', 'children': [], 'value': 'cores'}; {'id': '276', 'type': 'integer', 'children': [], 'value': '32'}, {'id': '277', 'type': 'keyword_argument', 'children': ['278', '279']}; {'id': '278', 'type': 'identifier', 'children': [], 'value': 'memory'}, {'id': '279', 'type': 'string', 'children': [], 'value': "'20 G'"}; {'id': '280', 'type': 'keyword_argument', 'children': ['281', '282']}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'disk'}; {'id': '282', 'type': 'string', 'children': [], 'value': "'30 G'"}, {'id': '283', 'type': 'if_statement', 'children': ['284', '287']}; {'id': '284', 'type': 'subscript', 'children': ['285', '286']}, {'id': '285', 'type': 'identifier', 'children': [], 'value': 'input_args'}; {'id': '286', 'type': 'string', 'children': [], 'value': "'output_dir'"}, {'id': '287', 'type': 'block', 'children': ['288']}; {'id': '288', 'type': 'expression_statement', 'children': ['289']}, {'id': '289', 'type': 'call', 'children': ['290', '291']}; {'id': '290', 'type': 'identifier', 'children': [], 'value': 'move_to_output_dir'}, {'id': '291', 'type': 'argument_list', 'children': ['292', '293', '294', '297']}; {'id': '292', 'type': 'identifier', 'children': [], 'value': 'work_dir'}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'output_dir'}; {'id': '294', 'type': 'keyword_argument', 'children': ['295', '296']}, {'id': '295', 'type': 'identifier', 'children': [], 'value': 'uuid'}; {'id': '296', 'type': 'None', 'children': []}, {'id': '297', 'type': 'keyword_argument', 'children': ['298', '299']}; {'id': '298', 'type': 'identifier', 'children': [], 'value': 'files'}, {'id': '299', 'type': 'list', 'children': ['300'], 'value': "[uuid + '.bam']"}; {'id': '300', 'type': 'binary_operator', 'children': ['301', '302'], 'value': '+'}, {'id': '301', 'type': 'identifier', 'children': [], 'value': 'uuid'} | def alignment(job, ids, input_args, sample):
uuid, urls = sample
work_dir = job.fileStore.getLocalTempDir()
output_dir = input_args['output_dir']
key_path = input_args['ssec']
cores = multiprocessing.cpu_count()
return_input_paths(job, work_dir, ids, 'ref.fa', 'ref.fa.amb', 'ref.fa.ann',
'ref.fa.bwt', 'ref.fa.pac', 'ref.fa.sa', 'ref.fa.fai')
for url in urls:
download_encrypted_file(work_dir, url, key_path, os.path.basename(url))
docker_cmd = ['docker', 'run', '--rm', '-v', '{}:/data'.format(work_dir)]
bwa_command = ["jvivian/bwa",
"mem",
"-R", "@RG\tID:{0}\tPL:Illumina\tSM:{0}\tLB:KapaHyper".format(uuid),
"-T", str(0),
"-t", str(cores),
"/data/ref.fa"] + [os.path.join('/data/', os.path.basename(x)) for x in urls]
bamsort_command = ["jeltje/biobambam",
"/usr/local/bin/bamsort",
"inputformat=sam",
"level=1",
"inputthreads={}".format(cores),
"outputthreads={}".format(cores),
"calmdnm=1",
"calmdnmrecompindetonly=1",
"calmdnmreference=/data/ref.fa",
"I=/data/{}".format(uuid + '.sam')]
with open(os.path.join(work_dir, uuid + '.sam'), 'w') as f_out:
subprocess.check_call(docker_cmd + bwa_command, stdout=f_out)
with open(os.path.join(work_dir, uuid + '.bam'), 'w') as f_out:
subprocess.check_call(docker_cmd + bamsort_command, stdout=f_out)
ids['bam'] = job.fileStore.writeGlobalFile(os.path.join(work_dir, uuid + '.bam'))
if input_args['s3_dir']:
job.addChildJobFn(upload_bam_to_s3, ids, input_args, sample, cores=32, memory='20 G', disk='30 G')
if input_args['output_dir']:
move_to_output_dir(work_dir, output_dir, uuid=None, files=[uuid + '.bam']) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'bamsort_and_index'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'job_vars'}; {'id': '6', 'type': 'block', 'children': ['7', '13', '23', '29', '39', '51', '64', '73', '89', '105', '118', '139', '156', '173']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '12']}, {'id': '9', 'type': 'pattern_list', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'input_args'}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'ids'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'job_vars'}, {'id': '13', 'type': 'expression_statement', 'children': ['14']}; {'id': '14', 'type': 'assignment', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'work_dir'}; {'id': '16', 'type': 'call', 'children': ['17', '22']}, {'id': '17', 'type': 'attribute', 'children': ['18', '21']}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'fileStore'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'getLocalTempDir'}; {'id': '22', 'type': 'argument_list', 'children': []}, {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'sudo'}; {'id': '26', 'type': 'subscript', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'input_args'}; {'id': '28', 'type': 'string', 'children': [], 'value': "'sudo'"}, {'id': '29', 'type': 'expression_statement', 'children': ['30']}; {'id': '30', 'type': 'assignment', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'rg_alignments'}; {'id': '32', 'type': 'call', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'return_input_paths'}; {'id': '34', 'type': 'argument_list', 'children': ['35', '36', '37', '38']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'work_dir'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'ids'}; {'id': '38', 'type': 'string', 'children': [], 'value': "'rg_alignments.bam'"}, {'id': '39', 'type': 'expression_statement', 'children': ['40']}; {'id': '40', 'type': 'assignment', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'output'}; {'id': '42', 'type': 'call', 'children': ['43', '48']}, {'id': '43', 'type': 'attribute', 'children': ['44', '47']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '48', 'type': 'argument_list', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'work_dir'}; {'id': '50', 'type': 'string', 'children': [], 'value': "'sorted.bam'"}, {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'assignment', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'cmd1'}; {'id': '54', 'type': 'list', 'children': ['55', '56', '60'], 'value': "['sort', docker_path(rg_alignments), docker_path('sorted')]"}, {'id': '55', 'type': 'string', 'children': [], 'value': "'sort'"}; {'id': '56', 'type': 'call', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'docker_path'}; {'id': '58', 'type': 'argument_list', 'children': ['59']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'rg_alignments'}; {'id': '60', 'type': 'call', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'docker_path'}; {'id': '62', 'type': 'argument_list', 'children': ['63']}, {'id': '63', 'type': 'string', 'children': [], 'value': "'sorted'"}; {'id': '64', 'type': 'expression_statement', 'children': ['65']}, {'id': '65', 'type': 'assignment', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'cmd2'}, {'id': '67', 'type': 'list', 'children': ['68', '69'], 'value': "['index', docker_path(output)]"}; {'id': '68', 'type': 'string', 'children': [], 'value': "'index'"}, {'id': '69', 'type': 'call', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'docker_path'}, {'id': '71', 'type': 'argument_list', 'children': ['72']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'output'}, {'id': '73', 'type': 'expression_statement', 'children': ['74']}; {'id': '74', 'type': 'call', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'docker_call'}; {'id': '76', 'type': 'argument_list', 'children': ['77', '80', '83', '86']}, {'id': '77', 'type': 'keyword_argument', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'tool'}, {'id': '79', 'type': 'string', 'children': [], 'value': "'quay.io/ucsc_cgl/samtools:0.1.19--dd5ac549b95eb3e5d166a5e310417ef13651994e'"}; {'id': '80', 'type': 'keyword_argument', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'tool_parameters'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'cmd1'}, {'id': '83', 'type': 'keyword_argument', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'work_dir'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'work_dir'}; {'id': '86', 'type': 'keyword_argument', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'sudo'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'sudo'}, {'id': '89', 'type': 'expression_statement', 'children': ['90']}; 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{'id': '104', 'type': 'identifier', 'children': [], 'value': 'sudo'}, {'id': '105', 'type': 'expression_statement', 'children': ['106']}; {'id': '106', 'type': 'assignment', 'children': ['107', '110']}, {'id': '107', 'type': 'subscript', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'ids'}, {'id': '109', 'type': 'string', 'children': [], 'value': "'sorted.bam'"}; {'id': '110', 'type': 'call', 'children': ['111', '116']}, {'id': '111', 'type': 'attribute', 'children': ['112', '115']}; {'id': '112', 'type': 'attribute', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'fileStore'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'writeGlobalFile'}; {'id': '116', 'type': 'argument_list', 'children': ['117']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'output'}; {'id': '118', 'type': 'expression_statement', 'children': ['119']}, {'id': '119', 'type': 'assignment', 'children': ['120', '123']}; {'id': '120', 'type': 'subscript', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'ids'}; {'id': '122', 'type': 'string', 'children': [], 'value': "'sorted.bam.bai'"}, {'id': '123', 'type': 'call', 'children': ['124', '129']}; {'id': '124', 'type': 'attribute', 'children': ['125', '128']}, {'id': '125', 'type': 'attribute', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'fileStore'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'writeGlobalFile'}, {'id': '129', 'type': 'argument_list', 'children': ['130']}; {'id': '130', 'type': 'call', 'children': ['131', '136']}, {'id': '131', 'type': 'attribute', 'children': ['132', '135']}; {'id': '132', 'type': 'attribute', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '136', 'type': 'argument_list', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'work_dir'}; {'id': '138', 'type': 'string', 'children': [], 'value': "'sorted.bam.bai'"}, {'id': '139', 'type': 'expression_statement', 'children': ['140']}; {'id': '140', 'type': 'assignment', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'output_ids'}; {'id': '142', 'type': 'call', 'children': ['143', '155']}, {'id': '143', 'type': 'attribute', 'children': ['144', '154']}; {'id': '144', 'type': 'call', 'children': ['145', '148']}, {'id': '145', 'type': 'attribute', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'addChildJobFn'}; {'id': '148', 'type': 'argument_list', 'children': ['149', '150', '151']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'sort_bam_by_reference'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'job_vars'}, {'id': '151', 'type': 'keyword_argument', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'disk'}, {'id': '153', 'type': 'string', 'children': [], 'value': "'50 G'"}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'rv'}, {'id': '155', 'type': 'argument_list', 'children': []}; {'id': '156', 'type': 'expression_statement', 'children': ['157']}, {'id': '157', 'type': 'assignment', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'rseq_id'}, {'id': '159', 'type': 'call', 'children': ['160', '172']}; {'id': '160', 'type': 'attribute', 'children': ['161', '171']}, {'id': '161', 'type': 'call', 'children': ['162', '165']}; {'id': '162', 'type': 'attribute', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'addChildJobFn'}, {'id': '165', 'type': 'argument_list', 'children': ['166', '167', '168']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'rseq_qc'}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'job_vars'}; {'id': '168', 'type': 'keyword_argument', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'disk'}; {'id': '170', 'type': 'string', 'children': [], 'value': "'20 G'"}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'rv'}; {'id': '172', 'type': 'argument_list', 'children': []}, {'id': '173', 'type': 'return_statement', 'children': ['174']}; {'id': '174', 'type': 'expression_list', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'rseq_id'} | def bamsort_and_index(job, job_vars):
input_args, ids = job_vars
work_dir = job.fileStore.getLocalTempDir()
sudo = input_args['sudo']
rg_alignments = return_input_paths(job, work_dir, ids, 'rg_alignments.bam')
output = os.path.join(work_dir, 'sorted.bam')
cmd1 = ['sort', docker_path(rg_alignments), docker_path('sorted')]
cmd2 = ['index', docker_path(output)]
docker_call(tool='quay.io/ucsc_cgl/samtools:0.1.19--dd5ac549b95eb3e5d166a5e310417ef13651994e',
tool_parameters=cmd1, work_dir=work_dir, sudo=sudo)
docker_call(tool='quay.io/ucsc_cgl/samtools:0.1.19--dd5ac549b95eb3e5d166a5e310417ef13651994e',
tool_parameters=cmd2, work_dir=work_dir, sudo=sudo)
ids['sorted.bam'] = job.fileStore.writeGlobalFile(output)
ids['sorted.bam.bai'] = job.fileStore.writeGlobalFile(os.path.join(work_dir, 'sorted.bam.bai'))
output_ids = job.addChildJobFn(sort_bam_by_reference, job_vars, disk='50 G').rv()
rseq_id = job.addChildJobFn(rseq_qc, job_vars, disk='20 G').rv()
return rseq_id, output_ids |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_bam_by_reference'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'job_vars'}; {'id': '6', 'type': 'block', 'children': ['7', '13', '23', '36', '48', '52', '72', '113', '119', '177', '195', '205', '212', '225', '245', '262']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '12']}, {'id': '9', 'type': 'pattern_list', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'input_args'}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'ids'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'job_vars'}, {'id': '13', 'type': 'expression_statement', 'children': ['14']}; 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{'id': '30', 'type': 'argument_list', 'children': ['31', '32', '33', '34', '35']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'work_dir'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'ids'}; {'id': '34', 'type': 'string', 'children': [], 'value': "'sorted.bam'"}, {'id': '35', 'type': 'string', 'children': [], 'value': "'sorted.bam.bai'"}; {'id': '36', 'type': 'expression_statement', 'children': ['37']}, {'id': '37', 'type': 'assignment', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'output'}, {'id': '39', 'type': 'call', 'children': ['40', '45']}; {'id': '40', 'type': 'attribute', 'children': ['41', '44']}, {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '45', 'type': 'argument_list', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'work_dir'}, {'id': '47', 'type': 'string', 'children': [], 'value': "'sort_by_ref.bam'"}; {'id': '48', 'type': 'expression_statement', 'children': ['49']}, {'id': '49', 'type': 'assignment', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'ref_seqs'}, {'id': '51', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '52', 'type': 'expression_statement', 'children': ['53']}, {'id': '53', 'type': 'assignment', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'handle'}, {'id': '55', 'type': 'attribute', 'children': ['56', '71']}; {'id': '56', 'type': 'call', 'children': ['57', '60']}, {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'subprocess'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'Popen'}; {'id': '60', 'type': 'argument_list', 'children': ['61', '66']}, {'id': '61', 'type': 'list', 'children': ['62', '63', '64', '65'], 'value': '["samtools", "view", "-H", sorted_bam]'}; {'id': '62', 'type': 'string', 'children': [], 'value': '"samtools"'}, {'id': '63', 'type': 'string', 'children': [], 'value': '"view"'}; {'id': '64', 'type': 'string', 'children': [], 'value': '"-H"'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'sorted_bam'}; {'id': '66', 'type': 'keyword_argument', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'stdout'}; {'id': '68', 'type': 'attribute', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'subprocess'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'PIPE'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'stdout'}; {'id': '72', 'type': 'for_statement', 'children': ['73', '74', '75']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'handle'}, {'id': '75', 'type': 'block', 'children': ['76']}; {'id': '76', 'type': 'if_statement', 'children': ['77', '83']}, {'id': '77', 'type': 'call', 'children': ['78', '81']}; {'id': '78', 'type': 'attribute', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'startswith'}, {'id': '81', 'type': 'argument_list', 'children': ['82']}; {'id': '82', 'type': 'string', 'children': [], 'value': '"@SQ"'}, {'id': '83', 'type': 'block', 'children': ['84', '93', '106']}; {'id': '84', 'type': 'expression_statement', 'children': ['85']}, {'id': '85', 'type': 'assignment', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'tmp'}, {'id': '87', 'type': 'call', 'children': ['88', '91']}; {'id': '88', 'type': 'attribute', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'split'}, {'id': '91', 'type': 'argument_list', 'children': ['92']}; {'id': '92', 'type': 'string', 'children': [], 'value': '"\\t"'}, {'id': '93', 'type': 'expression_statement', 'children': ['94']}; 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{'id': '110', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '111', 'type': 'argument_list', 'children': ['112']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'chrom'}, {'id': '113', 'type': 'expression_statement', 'children': ['114']}; {'id': '114', 'type': 'call', 'children': ['115', '118']}, {'id': '115', 'type': 'attribute', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'handle'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'close'}; {'id': '118', 'type': 'argument_list', 'children': []}, {'id': '119', 'type': 'for_statement', 'children': ['120', '121', '122']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'chrom'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'ref_seqs'}; {'id': '122', 'type': 'block', 'children': ['123', '132', '151', '165']}, {'id': '123', 'type': 'expression_statement', 'children': ['124']}; {'id': '124', 'type': 'assignment', 'children': ['125', '126']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'cmd_view'}; {'id': '126', 'type': 'list', 'children': ['127', '128', '129', '130', '131'], 'value': '["samtools", "view", "-b", sorted_bam, chrom]'}, {'id': '127', 'type': 'string', 'children': [], 'value': '"samtools"'}; {'id': '128', 'type': 'string', 'children': [], 'value': '"view"'}, {'id': '129', 'type': 'string', 'children': [], 'value': '"-b"'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'sorted_bam'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'chrom'}; {'id': '132', 'type': 'expression_statement', 'children': ['133']}, {'id': '133', 'type': 'assignment', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'cmd_sort'}, {'id': '135', 'type': 'list', 'children': ['136', '137', '138', '139', '140', '141', '142'], 'value': '["samtools", "sort", "-m", "3000000000", "-n", "-", os.path.join(work_dir, chrom)]'}; {'id': '136', 'type': 'string', 'children': [], 'value': '"samtools"'}, {'id': '137', 'type': 'string', 'children': [], 'value': '"sort"'}; 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{'id': '154', 'type': 'call', 'children': ['155', '158']}, {'id': '155', 'type': 'attribute', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'subprocess'}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'Popen'}; {'id': '158', 'type': 'argument_list', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'cmd_view'}; {'id': '160', 'type': 'keyword_argument', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'stdout'}; {'id': '162', 'type': 'attribute', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'subprocess'}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'PIPE'}, {'id': '165', 'type': 'expression_statement', 'children': ['166']}; {'id': '166', 'type': 'call', 'children': ['167', '170']}, {'id': '167', 'type': 'attribute', 'children': ['168', '169']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'subprocess'}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'check_call'}; {'id': '170', 'type': 'argument_list', 'children': ['171', '172']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'cmd_sort'}; {'id': '172', 'type': 'keyword_argument', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'stdin'}; {'id': '174', 'type': 'attribute', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'p1'}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'stdout'}, {'id': '177', 'type': 'expression_statement', 'children': ['178']}; {'id': '178', 'type': 'assignment', 'children': ['179', '180']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'sorted_files'}; {'id': '180', 'type': 'list_comprehension', 'children': ['181', '192']}, {'id': '181', 'type': 'binary_operator', 'children': ['182', '191'], 'value': '+'}; {'id': '182', 'type': 'call', 'children': ['183', '188']}, {'id': '183', 'type': 'attribute', 'children': ['184', '187']}; {'id': '184', 'type': 'attribute', 'children': ['185', '186']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '188', 'type': 'argument_list', 'children': ['189', '190']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'work_dir'}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'chrom'}, {'id': '191', 'type': 'string', 'children': [], 'value': "'.bam'"}; {'id': '192', 'type': 'for_in_clause', 'children': ['193', '194']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'chrom'}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'ref_seqs'}, {'id': '195', 'type': 'expression_statement', 'children': ['196']}; {'id': '196', 'type': 'assignment', 'children': ['197', '198']}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'cmd'}; {'id': '198', 'type': 'binary_operator', 'children': ['199', '204'], 'value': '+'}, {'id': '199', 'type': 'list', 'children': ['200', '201', '202', '203'], 'value': '["samtools", "cat", "-o", output]'}; {'id': '200', 'type': 'string', 'children': [], 'value': '"samtools"'}, {'id': '201', 'type': 'string', 'children': [], 'value': '"cat"'}; {'id': '202', 'type': 'string', 'children': [], 'value': '"-o"'}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'output'}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'sorted_files'}, {'id': '205', 'type': 'expression_statement', 'children': ['206']}; {'id': '206', 'type': 'call', 'children': ['207', '210']}, {'id': '207', 'type': 'attribute', 'children': ['208', '209']}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'subprocess'}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'check_call'}; {'id': '210', 'type': 'argument_list', 'children': ['211']}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'cmd'}; {'id': '212', 'type': 'expression_statement', 'children': ['213']}, {'id': '213', 'type': 'assignment', 'children': ['214', '217']}; {'id': '214', 'type': 'subscript', 'children': ['215', '216']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'ids'}; {'id': '216', 'type': 'string', 'children': [], 'value': "'sort_by_ref.bam'"}, {'id': '217', 'type': 'call', 'children': ['218', '223']}; {'id': '218', 'type': 'attribute', 'children': ['219', '222']}, {'id': '219', 'type': 'attribute', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'fileStore'}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'writeGlobalFile'}, {'id': '223', 'type': 'argument_list', 'children': ['224']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'output'}, {'id': '225', 'type': 'expression_statement', 'children': ['226']}; {'id': '226', 'type': 'assignment', 'children': ['227', '228']}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'rsem_id'}; {'id': '228', 'type': 'call', 'children': ['229', '244']}, {'id': '229', 'type': 'attribute', 'children': ['230', '243']}; {'id': '230', 'type': 'call', 'children': ['231', '234']}, {'id': '231', 'type': 'attribute', 'children': ['232', '233']}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'addChildJobFn'}; {'id': '234', 'type': 'argument_list', 'children': ['235', '236', '237', '240']}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'transcriptome'}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'job_vars'}, {'id': '237', 'type': 'keyword_argument', 'children': ['238', '239']}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'disk'}, {'id': '239', 'type': 'string', 'children': [], 'value': "'30 G'"}; {'id': '240', 'type': 'keyword_argument', 'children': ['241', '242']}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'memory'}; {'id': '242', 'type': 'string', 'children': [], 'value': "'30 G'"}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'rv'}; {'id': '244', 'type': 'argument_list', 'children': []}, {'id': '245', 'type': 'expression_statement', 'children': ['246']}; {'id': '246', 'type': 'assignment', 'children': ['247', '248']}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'exon_id'}; {'id': '248', 'type': 'call', 'children': ['249', '261']}, {'id': '249', 'type': 'attribute', 'children': ['250', '260']}; {'id': '250', 'type': 'call', 'children': ['251', '254']}, {'id': '251', 'type': 'attribute', 'children': ['252', '253']}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'addChildJobFn'}; {'id': '254', 'type': 'argument_list', 'children': ['255', '256', '257']}, {'id': '255', 'type': 'identifier', 'children': [], 'value': 'exon_count'}; {'id': '256', 'type': 'identifier', 'children': [], 'value': 'job_vars'}, {'id': '257', 'type': 'keyword_argument', 'children': ['258', '259']}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'disk'}, {'id': '259', 'type': 'string', 'children': [], 'value': "'30 G'"}; {'id': '260', 'type': 'identifier', 'children': [], 'value': 'rv'}, {'id': '261', 'type': 'argument_list', 'children': []}; {'id': '262', 'type': 'return_statement', 'children': ['263']}, {'id': '263', 'type': 'expression_list', 'children': ['264', '265']}; {'id': '264', 'type': 'identifier', 'children': [], 'value': 'exon_id'}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'rsem_id'} | def sort_bam_by_reference(job, job_vars):
input_args, ids = job_vars
work_dir = job.fileStore.getLocalTempDir()
sorted_bam, sorted_bai = return_input_paths(job, work_dir, ids, 'sorted.bam', 'sorted.bam.bai')
output = os.path.join(work_dir, 'sort_by_ref.bam')
ref_seqs = []
handle = subprocess.Popen(["samtools", "view", "-H", sorted_bam], stdout=subprocess.PIPE).stdout
for line in handle:
if line.startswith("@SQ"):
tmp = line.split("\t")
chrom = tmp[1].split(":")[1]
ref_seqs.append(chrom)
handle.close()
for chrom in ref_seqs:
cmd_view = ["samtools", "view", "-b", sorted_bam, chrom]
cmd_sort = ["samtools", "sort", "-m", "3000000000", "-n", "-", os.path.join(work_dir, chrom)]
p1 = subprocess.Popen(cmd_view, stdout=subprocess.PIPE)
subprocess.check_call(cmd_sort, stdin=p1.stdout)
sorted_files = [os.path.join(work_dir, chrom) + '.bam' for chrom in ref_seqs]
cmd = ["samtools", "cat", "-o", output] + sorted_files
subprocess.check_call(cmd)
ids['sort_by_ref.bam'] = job.fileStore.writeGlobalFile(output)
rsem_id = job.addChildJobFn(transcriptome, job_vars, disk='30 G', memory='30 G').rv()
exon_id = job.addChildJobFn(exon_count, job_vars, disk='30 G').rv()
return exon_id, rsem_id |
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{'id': '96', 'type': 'identifier', 'children': [], 'value': 's3_dir'}, {'id': '97', 'type': 'pair', 'children': ['98', '99']}; {'id': '98', 'type': 'string', 'children': [], 'value': "'sudo'"}, {'id': '99', 'type': 'attribute', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'sudo'}; {'id': '102', 'type': 'pair', 'children': ['103', '104']}, {'id': '103', 'type': 'string', 'children': [], 'value': "'single_end_reads'"}; {'id': '104', 'type': 'attribute', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'single_end_reads'}, {'id': '107', 'type': 'pair', 'children': ['108', '109']}; {'id': '108', 'type': 'string', 'children': [], 'value': "'upload_bam_to_s3'"}, {'id': '109', 'type': 'attribute', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'upload_bam_to_s3'}; {'id': '112', 'type': 'pair', 'children': ['113', '114']}, {'id': '113', 'type': 'string', 'children': [], 'value': "'uuid'"}; {'id': '114', 'type': 'None', 'children': []}, {'id': '115', 'type': 'pair', 'children': ['116', '117']}; {'id': '116', 'type': 'string', 'children': [], 'value': "'sample.tar'"}, {'id': '117', 'type': 'None', 'children': []}; {'id': '118', 'type': 'pair', 'children': ['119', '120']}, {'id': '119', 'type': 'string', 'children': [], 'value': "'cpu_count'"}; {'id': '120', 'type': 'None', 'children': []}, {'id': '121', 'type': 'expression_statement', 'children': ['122']}; {'id': '122', 'type': 'call', 'children': ['123', '128']}, {'id': '123', 'type': 'attribute', 'children': ['124', '127']}; {'id': '124', 'type': 'attribute', 'children': ['125', '126']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'Job'}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'Runner'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'startToil'}; {'id': '128', 'type': 'argument_list', 'children': ['129', '136']}, {'id': '129', 'type': 'call', 'children': ['130', '133']}; {'id': '130', 'type': 'attribute', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'Job'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'wrapJobFn'}, {'id': '133', 'type': 'argument_list', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'download_shared_files'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'inputs'} | def main():
parser = build_parser()
Job.Runner.addToilOptions(parser)
args = parser.parse_args()
inputs = {'config': args.config,
'config_fastq': args.config_fastq,
'input': args.input,
'unc.bed': args.unc,
'hg19.transcripts.fa': args.fasta,
'composite_exons.bed': args.composite_exons,
'normalize.pl': args.normalize,
'output_dir': args.output_dir,
'rsem_ref.zip': args.rsem_ref,
'chromosomes.zip': args.chromosomes,
'ebwt.zip': args.ebwt,
'ssec': args.ssec,
's3_dir': args.s3_dir,
'sudo': args.sudo,
'single_end_reads': args.single_end_reads,
'upload_bam_to_s3': args.upload_bam_to_s3,
'uuid': None,
'sample.tar': None,
'cpu_count': None}
Job.Runner.startToil(Job.wrapJobFn(download_shared_files, inputs), args) |
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{'id': '32', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '33', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '34', 'type': 'call', 'children': ['35', '38']}, {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'sin'}; {'id': '38', 'type': 'argument_list', 'children': ['39']}, {'id': '39', 'type': 'binary_operator', 'children': ['40', '50'], 'value': '*'}; {'id': '40', 'type': 'binary_operator', 'children': ['41', '46'], 'value': '*'}, {'id': '41', 'type': 'binary_operator', 'children': ['42', '43'], 'value': '*'}; {'id': '42', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'pi'}; {'id': '46', 'type': 'parenthesized_expression', 'children': ['47']}, {'id': '47', 'type': 'binary_operator', 'children': ['48', '49'], 'value': '+'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '49', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '51', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '52', 'type': 'binary_operator', 'children': ['53', '60'], 'value': '*'}, {'id': '53', 'type': 'subscript', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'pars'}, {'id': '55', 'type': 'binary_operator', 'children': ['56', '59'], 'value': '+'}; {'id': '56', 'type': 'binary_operator', 'children': ['57', '58'], 'value': '*'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '58', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '59', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '60', 'type': 'call', 'children': ['61', '64']}, {'id': '61', 'type': 'attribute', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'cos'}; {'id': '64', 'type': 'argument_list', 'children': ['65']}, {'id': '65', 'type': 'binary_operator', 'children': ['66', '76'], 'value': '*'}; {'id': '66', 'type': 'binary_operator', 'children': ['67', '72'], 'value': '*'}, {'id': '67', 'type': 'binary_operator', 'children': ['68', '69'], 'value': '*'}; {'id': '68', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '69', 'type': 'attribute', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'pi'}; {'id': '72', 'type': 'parenthesized_expression', 'children': ['73']}, {'id': '73', 'type': 'binary_operator', 'children': ['74', '75'], 'value': '+'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '75', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '77', 'type': 'return_statement', 'children': ['78']} | def fourier_series(self, pars, x, order):
sum = pars[0]
for i in range(order):
sum += pars[i * 2 + 1] * np.sin(2 * np.pi * (i + 1) * x) \
+ pars[i * 2 + 2] * np.cos(2 * np.pi * (i + 1) * x)
return sum |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'slope_percentile'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'date'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'mag'}, {'id': '7', 'type': 'block', 'children': ['8', '27', '46', '57', '63', '69', '75', '85', '95']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}, {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'date_diff'}, {'id': '11', 'type': 'binary_operator', 'children': ['12', '17'], 'value': '-'}; {'id': '12', 'type': 'subscript', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'date'}; {'id': '14', 'type': 'slice', 'children': ['15', '16']}, {'id': '15', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '16', 'type': 'colon', 'children': []}, {'id': '17', 'type': 'subscript', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'date'}, {'id': '19', 'type': 'slice', 'children': ['20', '21']}; {'id': '20', 'type': 'colon', 'children': []}, {'id': '21', 'type': 'binary_operator', 'children': ['22', '26'], 'value': '-'}; {'id': '22', 'type': 'call', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'date'}; {'id': '26', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'assignment', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'mag_diff'}; {'id': '30', 'type': 'binary_operator', 'children': ['31', '36'], 'value': '-'}, {'id': '31', 'type': 'subscript', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'mag'}, {'id': '33', 'type': 'slice', 'children': ['34', '35']}; {'id': '34', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '35', 'type': 'colon', 'children': []}; {'id': '36', 'type': 'subscript', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'mag'}; {'id': '38', 'type': 'slice', 'children': ['39', '40']}, {'id': '39', 'type': 'colon', 'children': []}; {'id': '40', 'type': 'binary_operator', 'children': ['41', '45'], 'value': '-'}, {'id': '41', 'type': 'call', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '43', 'type': 'argument_list', 'children': ['44']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'mag'}, {'id': '45', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '46', 'type': 'expression_statement', 'children': ['47']}, {'id': '47', 'type': 'assignment', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '49', 'type': 'call', 'children': ['50', '53']}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'where'}, {'id': '53', 'type': 'argument_list', 'children': ['54']}; {'id': '54', 'type': 'comparison_operator', 'children': ['55', '56'], 'value': '!='}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'mag_diff'}; {'id': '56', 'type': 'float', 'children': [], 'value': '0.'}, {'id': '57', 'type': 'expression_statement', 'children': ['58']}; {'id': '58', 'type': 'assignment', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'date_diff'}; {'id': '60', 'type': 'subscript', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'date_diff'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '63', 'type': 'expression_statement', 'children': ['64']}; {'id': '64', 'type': 'assignment', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'mag_diff'}; {'id': '66', 'type': 'subscript', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'mag_diff'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '69', 'type': 'expression_statement', 'children': ['70']}; {'id': '70', 'type': 'assignment', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'slope'}; {'id': '72', 'type': 'binary_operator', 'children': ['73', '74'], 'value': '/'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'date_diff'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'mag_diff'}, {'id': '75', 'type': 'expression_statement', 'children': ['76']}; {'id': '76', 'type': 'assignment', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'percentile_10'}; {'id': '78', 'type': 'call', 'children': ['79', '82']}, {'id': '79', 'type': 'attribute', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'percentile'}; {'id': '82', 'type': 'argument_list', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'slope'}; {'id': '84', 'type': 'float', 'children': [], 'value': '10.'}, {'id': '85', 'type': 'expression_statement', 'children': ['86']}; {'id': '86', 'type': 'assignment', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'percentile_90'}; {'id': '88', 'type': 'call', 'children': ['89', '92']}, {'id': '89', 'type': 'attribute', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'percentile'}; {'id': '92', 'type': 'argument_list', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'slope'}; {'id': '94', 'type': 'float', 'children': [], 'value': '90.'}, {'id': '95', 'type': 'return_statement', 'children': ['96']}; {'id': '96', 'type': 'expression_list', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'percentile_10'} | def slope_percentile(self, date, mag):
date_diff = date[1:] - date[:len(date) - 1]
mag_diff = mag[1:] - mag[:len(mag) - 1]
index = np.where(mag_diff != 0.)
date_diff = date_diff[index]
mag_diff = mag_diff[index]
slope = date_diff / mag_diff
percentile_10 = np.percentile(slope, 10.)
percentile_90 = np.percentile(slope, 90.)
return percentile_10, percentile_90 |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'number_aware_alphabetical_cmp'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'str1'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'str2'}; {'id': '6', 'type': 'block', 'children': ['7', '55', '65', '75', '89', '93', '125', '152']}, {'id': '7', 'type': 'function_definition', 'children': ['8', '9', '11']}; {'id': '8', 'type': 'function_name', 'children': [], 'value': 'flatten_tokens'}, {'id': '9', 'type': 'parameters', 'children': ['10']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'tokens'}, {'id': '11', 'type': 'block', 'children': ['12', '16', '53']}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}, {'id': '13', 'type': 'assignment', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'l'}, {'id': '15', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '16', 'type': 'for_statement', 'children': ['17', '18', '19']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'token'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'tokens'}, {'id': '19', 'type': 'block', 'children': ['20']}; {'id': '20', 'type': 'if_statement', 'children': ['21', '26', '38']}, {'id': '21', 'type': 'call', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '23', 'type': 'argument_list', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'token'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '26', 'type': 'block', 'children': ['27']}, {'id': '27', 'type': 'for_statement', 'children': ['28', '29', '30']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'char'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'token'}; {'id': '30', 'type': 'block', 'children': ['31']}, {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'call', 'children': ['33', '36']}, {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'l'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '36', 'type': 'argument_list', 'children': ['37']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'char'}; {'id': '38', 'type': 'else_clause', 'children': ['39']}, {'id': '39', 'type': 'block', 'children': ['40', '46']}; {'id': '40', 'type': 'assert_statement', 'children': ['41']}, {'id': '41', 'type': 'call', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '43', 'type': 'argument_list', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'token'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'float'}; {'id': '46', 'type': 'expression_statement', 'children': ['47']}, {'id': '47', 'type': 'call', 'children': ['48', '51']}; {'id': '48', 'type': 'attribute', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '51', 'type': 'argument_list', 'children': ['52']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'token'}, {'id': '53', 'type': 'return_statement', 'children': ['54']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'l'}, {'id': '55', 'type': 'expression_statement', 'children': ['56']}; {'id': '56', 'type': 'assignment', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'seq1'}; {'id': '58', 'type': 'call', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'flatten_tokens'}; {'id': '60', 'type': 'argument_list', 'children': ['61']}, {'id': '61', 'type': 'call', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'tokenize_by_number'}, {'id': '63', 'type': 'argument_list', 'children': ['64']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'str1'}, {'id': '65', 'type': 'expression_statement', 'children': ['66']}; {'id': '66', 'type': 'assignment', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'seq2'}; {'id': '68', 'type': 'call', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'flatten_tokens'}; {'id': '70', 'type': 'argument_list', 'children': ['71']}, {'id': '71', 'type': 'call', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'tokenize_by_number'}, {'id': '73', 'type': 'argument_list', 'children': ['74']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'str2'}, {'id': '75', 'type': 'expression_statement', 'children': ['76']}; {'id': '76', 'type': 'assignment', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '78', 'type': 'call', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'min'}; {'id': '80', 'type': 'argument_list', 'children': ['81', '85']}, {'id': '81', 'type': 'call', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '83', 'type': 'argument_list', 'children': ['84']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'seq1'}, {'id': '85', 'type': 'call', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '87', 'type': 'argument_list', 'children': ['88']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'seq2'}, {'id': '89', 'type': 'expression_statement', 'children': ['90']}; {'id': '90', 'type': 'assignment', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '92', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '93', 'type': 'while_statement', 'children': ['94', '97']}; {'id': '94', 'type': 'comparison_operator', 'children': ['95', '96'], 'value': '<'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'l'}, {'id': '97', 'type': 'block', 'children': ['98', '121']}; {'id': '98', 'type': 'if_statement', 'children': ['99', '106', '110']}, {'id': '99', 'type': 'comparison_operator', 'children': ['100', '103'], 'value': '<'}; {'id': '100', 'type': 'subscript', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'seq1'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '103', 'type': 'subscript', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'seq2'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '106', 'type': 'block', 'children': ['107']}, {'id': '107', 'type': 'return_statement', 'children': ['108']}; {'id': '108', 'type': 'unary_operator', 'children': ['109'], 'value': '-'}, {'id': '109', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '110', 'type': 'elif_clause', 'children': ['111', '118']}, {'id': '111', 'type': 'comparison_operator', 'children': ['112', '115'], 'value': '>'}; {'id': '112', 'type': 'subscript', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'seq1'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '115', 'type': 'subscript', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'seq2'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '118', 'type': 'block', 'children': ['119']}, {'id': '119', 'type': 'return_statement', 'children': ['120']}; {'id': '120', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '121', 'type': 'expression_statement', 'children': ['122']}; {'id': '122', 'type': 'augmented_assignment', 'children': ['123', '124'], 'value': '+='}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '124', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '125', 'type': 'if_statement', 'children': ['126', '135', '139']}; {'id': '126', 'type': 'comparison_operator', 'children': ['127', '131'], 'value': '<'}, {'id': '127', 'type': 'call', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '129', 'type': 'argument_list', 'children': ['130']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'seq1'}, {'id': '131', 'type': 'call', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '133', 'type': 'argument_list', 'children': ['134']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'seq2'}, {'id': '135', 'type': 'block', 'children': ['136']}; {'id': '136', 'type': 'return_statement', 'children': ['137']}, {'id': '137', 'type': 'unary_operator', 'children': ['138'], 'value': '-'}; {'id': '138', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '139', 'type': 'elif_clause', 'children': ['140', '149']}; {'id': '140', 'type': 'comparison_operator', 'children': ['141', '145'], 'value': '>'}, {'id': '141', 'type': 'call', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '143', 'type': 'argument_list', 'children': ['144']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'seq1'}, {'id': '145', 'type': 'call', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '147', 'type': 'argument_list', 'children': ['148']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'seq2'}, {'id': '149', 'type': 'block', 'children': ['150']}; {'id': '150', 'type': 'return_statement', 'children': ['151']}, {'id': '151', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '152', 'type': 'return_statement', 'children': ['153']}, {'id': '153', 'type': 'integer', 'children': [], 'value': '0'} | def number_aware_alphabetical_cmp(str1, str2):
def flatten_tokens(tokens):
l = []
for token in tokens:
if isinstance(token, str):
for char in token:
l.append(char)
else:
assert isinstance(token, float)
l.append(token)
return l
seq1 = flatten_tokens(tokenize_by_number(str1))
seq2 = flatten_tokens(tokenize_by_number(str2))
l = min(len(seq1),len(seq2))
i = 0
while i < l:
if seq1[i] < seq2[i]:
return -1
elif seq1[i] > seq2[i]:
return 1
i += 1
if len(seq1) < len(seq2):
return -1
elif len(seq1) > len(seq2):
return 1
return 0 |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_members'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'tup'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'names'}; {'id': '6', 'type': 'block', 'children': ['7', '30', '53']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '12']}, {'id': '9', 'type': 'pattern_list', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'scalars'}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'tuples'}; {'id': '12', 'type': 'call', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'partition'}; {'id': '14', 'type': 'argument_list', 'children': ['15', '29']}, {'id': '15', 'type': 'lambda', 'children': ['16', '18']}; {'id': '16', 'type': 'lambda_parameters', 'children': ['17']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '18', 'type': 'not_operator', 'children': ['19']}, {'id': '19', 'type': 'call', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'is_tuple_node'}, {'id': '21', 'type': 'argument_list', 'children': ['22']}; {'id': '22', 'type': 'attribute', 'children': ['23', '28']}, {'id': '23', 'type': 'subscript', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'tup'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'member'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'value'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'names'}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}, {'id': '31', 'type': 'assignment', 'children': ['32', '35']}; {'id': '32', 'type': 'pattern_list', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'unbound'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'bound'}, {'id': '35', 'type': 'call', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'partition'}, {'id': '37', 'type': 'argument_list', 'children': ['38', '52']}; {'id': '38', 'type': 'lambda', 'children': ['39', '41']}, {'id': '39', 'type': 'lambda_parameters', 'children': ['40']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '41', 'type': 'call', 'children': ['42', '51']}; {'id': '42', 'type': 'attribute', 'children': ['43', '50']}, {'id': '43', 'type': 'attribute', 'children': ['44', '49']}; {'id': '44', 'type': 'subscript', 'children': ['45', '48']}, {'id': '45', 'type': 'attribute', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'tup'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'member'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'is_unbound'}, {'id': '51', 'type': 'argument_list', 'children': []}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'scalars'}, {'id': '53', 'type': 'return_statement', 'children': ['54']}; {'id': '54', 'type': 'expression_list', 'children': ['55', '64']}, {'id': '55', 'type': 'binary_operator', 'children': ['56', '60'], 'value': '+'}; {'id': '56', 'type': 'call', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'usorted'}; {'id': '58', 'type': 'argument_list', 'children': ['59']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'unbound'}; {'id': '60', 'type': 'call', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'usorted'}; {'id': '62', 'type': 'argument_list', 'children': ['63']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'bound'}; {'id': '64', 'type': 'call', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'usorted'}; {'id': '66', 'type': 'argument_list', 'children': ['67']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'tuples'} | def sort_members(tup, names):
scalars, tuples = partition(lambda x: not is_tuple_node(tup.member[x].value), names)
unbound, bound = partition(lambda x: tup.member[x].value.is_unbound(), scalars)
return usorted(unbound) + usorted(bound), usorted(tuples) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_schemas'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'schemas'}, {'id': '5', 'type': 'block', 'children': ['6', '60']}; {'id': '6', 'type': 'function_definition', 'children': ['7', '8', '10']}, {'id': '7', 'type': 'function_name', 'children': [], 'value': 'keyfun'}; {'id': '8', 'type': 'parameters', 'children': ['9']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '10', 'type': 'block', 'children': ['11', '24']}, {'id': '11', 'type': 'expression_statement', 'children': ['12']}; {'id': '12', 'type': 'assignment', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '14', 'type': 'call', 'children': ['15', '23']}, {'id': '15', 'type': 'attribute', 'children': ['16', '22']}; {'id': '16', 'type': 'call', 'children': ['17', '20']}, {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'SQL_SCHEMA_REGEXP'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'match'}; {'id': '20', 'type': 'argument_list', 'children': ['21']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'groups'}, {'id': '23', 'type': 'argument_list', 'children': []}; {'id': '24', 'type': 'return_statement', 'children': ['25']}, {'id': '25', 'type': 'tuple', 'children': ['26', '32', '35', '46', '54']}; {'id': '26', 'type': 'call', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '28', 'type': 'argument_list', 'children': ['29']}, {'id': '29', 'type': 'subscript', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '31', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '32', 'type': 'subscript', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '34', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '35', 'type': 'conditional_expression', 'children': ['36', '42', '45'], 'value': 'if'}; {'id': '36', 'type': 'call', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '38', 'type': 'argument_list', 'children': ['39']}, {'id': '39', 'type': 'subscript', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '41', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '42', 'type': 'subscript', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '44', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '45', 'type': 'None', 'children': []}; {'id': '46', 'type': 'conditional_expression', 'children': ['47', '50', '53'], 'value': 'if'}, {'id': '47', 'type': 'subscript', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '49', 'type': 'integer', 'children': [], 'value': '3'}; {'id': '50', 'type': 'subscript', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '52', 'type': 'integer', 'children': [], 'value': '3'}, {'id': '53', 'type': 'string', 'children': [], 'value': "'zzz'"}; {'id': '54', 'type': 'call', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '56', 'type': 'argument_list', 'children': ['57']}, {'id': '57', 'type': 'subscript', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '59', 'type': 'integer', 'children': [], 'value': '4'}; {'id': '60', 'type': 'return_statement', 'children': ['61']}, {'id': '61', 'type': 'call', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '63', 'type': 'argument_list', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'schemas'}, {'id': '65', 'type': 'keyword_argument', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'keyfun'} | def sort_schemas(schemas):
def keyfun(v):
x = SQL_SCHEMA_REGEXP.match(v).groups()
return (int(x[0]), x[1], int(x[2]) if x[2] else None,
x[3] if x[3] else 'zzz', int(x[4]))
return sorted(schemas, key=keyfun) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_nodes'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'dom'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'cmp_func'}; {'id': '6', 'type': 'block', 'children': ['7', '13']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'call', 'children': ['9', '12']}, {'id': '9', 'type': 'attribute', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'dom'}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'normalize'}; {'id': '12', 'type': 'argument_list', 'children': []}, {'id': '13', 'type': 'for_statement', 'children': ['14', '15', '25']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '15', 'type': 'call', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '17', 'type': 'argument_list', 'children': ['18']}; {'id': '18', 'type': 'call', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'walk_dom'}; {'id': '20', 'type': 'argument_list', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'dom'}; {'id': '22', 'type': 'keyword_argument', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'elements_only'}; {'id': '24', 'type': 'True', 'children': []}, {'id': '25', 'type': 'block', 'children': ['26', '32']}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}, {'id': '27', 'type': 'assignment', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'prev_sib'}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'previousSibling'}; {'id': '32', 'type': 'while_statement', 'children': ['33', '42']}, {'id': '33', 'type': 'boolean_operator', 'children': ['34', '35'], 'value': 'and'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'prev_sib'}, {'id': '35', 'type': 'comparison_operator', 'children': ['36', '41'], 'value': '=='}; {'id': '36', 'type': 'call', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'cmp_func'}; {'id': '38', 'type': 'argument_list', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'prev_sib'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '41', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '42', 'type': 'block', 'children': ['43', '53']}, {'id': '43', 'type': 'expression_statement', 'children': ['44']}; {'id': '44', 'type': 'call', 'children': ['45', '50']}, {'id': '45', 'type': 'attribute', 'children': ['46', '49']}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'parentNode'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'insertBefore'}; {'id': '50', 'type': 'argument_list', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'prev_sib'}, {'id': '53', 'type': 'expression_statement', 'children': ['54']}; {'id': '54', 'type': 'assignment', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'prev_sib'}; {'id': '56', 'type': 'attribute', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'node'} | def sort_nodes(dom, cmp_func):
dom.normalize()
for node in list(walk_dom(dom, elements_only=True)):
prev_sib = node.previousSibling
while prev_sib and cmp_func(prev_sib, node) == 1:
node.parentNode.insertBefore(node, prev_sib)
prev_sib = node.previousSibling |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'currentdir'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'type', 'children': ['6']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '7', 'type': 'block', 'children': ['8', '99']}; {'id': '8', 'type': 'if_statement', 'children': ['9', '14']}, {'id': '9', 'type': 'comparison_operator', 'children': ['10', '13'], 'value': 'is'}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': '_currentdir'}, {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'block', 'children': ['15', '23']}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'directories'}; {'id': '18', 'type': 'attribute', 'children': ['19', '22']}, {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'availabledirs'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'folders'}, {'id': '23', 'type': 'if_statement', 'children': ['24', '30', '39', '54']}; {'id': '24', 'type': 'comparison_operator', 'children': ['25', '29'], 'value': '=='}, {'id': '25', 'type': 'call', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '27', 'type': 'argument_list', 'children': ['28']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'directories'}, {'id': '29', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '30', 'type': 'block', 'children': ['31']}, {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'assignment', 'children': ['33', '36']}, {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'currentdir'}; {'id': '36', 'type': 'subscript', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'directories'}; {'id': '38', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '39', 'type': 'elif_clause', 'children': ['40', '45']}; {'id': '40', 'type': 'comparison_operator', 'children': ['41', '44'], 'value': 'in'}, {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'DEFAULTDIR'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'directories'}, {'id': '45', 'type': 'block', 'children': ['46']}; {'id': '46', 'type': 'expression_statement', 'children': ['47']}, {'id': '47', 'type': 'assignment', 'children': ['48', '51']}; {'id': '48', 'type': 'attribute', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'currentdir'}, {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'DEFAULTDIR'}; {'id': '54', 'type': 'else_clause', 'children': ['55']}, {'id': '55', 'type': 'block', 'children': ['56', '65', '76', '91']}; {'id': '56', 'type': 'expression_statement', 'children': ['57']}, {'id': '57', 'type': 'assignment', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'prefix'}, {'id': '59', 'type': 'parenthesized_expression', 'children': ['60']}; {'id': '60', 'type': 'concatenated_string', 'children': ['61', '62', '63', '64']}, {'id': '61', 'type': 'string', 'children': [], 'value': "f'The current working directory of the '"}; {'id': '62', 'type': 'string', 'children': [], 'value': "f'{objecttools.classname(self)} object '"}, {'id': '63', 'type': 'string', 'children': [], 'value': "f'has not been defined manually and cannot '"}; {'id': '64', 'type': 'string', 'children': [], 'value': "f'be determined automatically:'"}, {'id': '65', 'type': 'if_statement', 'children': ['66', '68']}; {'id': '66', 'type': 'not_operator', 'children': ['67']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'directories'}; {'id': '68', 'type': 'block', 'children': ['69']}, {'id': '69', 'type': 'raise_statement', 'children': ['70']}; {'id': '70', 'type': 'call', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'RuntimeError'}; {'id': '72', 'type': 'argument_list', 'children': ['73']}, {'id': '73', 'type': 'concatenated_string', 'children': ['74', '75']}; {'id': '74', 'type': 'string', 'children': [], 'value': "f'{prefix} `{objecttools.repr_(self.basepath)}` '"}, {'id': '75', 'type': 'string', 'children': [], 'value': "f'does not contain any available directories.'"}; {'id': '76', 'type': 'if_statement', 'children': ['77', '82']}, {'id': '77', 'type': 'comparison_operator', 'children': ['78', '81'], 'value': 'is'}; {'id': '78', 'type': 'attribute', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'DEFAULTDIR'}, {'id': '81', 'type': 'None', 'children': []}; {'id': '82', 'type': 'block', 'children': ['83']}, {'id': '83', 'type': 'raise_statement', 'children': ['84']}; {'id': '84', 'type': 'call', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'RuntimeError'}; {'id': '86', 'type': 'argument_list', 'children': ['87']}, {'id': '87', 'type': 'concatenated_string', 'children': ['88', '89', '90']}; {'id': '88', 'type': 'string', 'children': [], 'value': "f'{prefix} `{objecttools.repr_(self.basepath)}` '"}, {'id': '89', 'type': 'string', 'children': [], 'value': "f'does contain multiple available directories '"}; {'id': '90', 'type': 'string', 'children': [], 'value': "f'({objecttools.enumeration(directories)}).'"}, {'id': '91', 'type': 'raise_statement', 'children': ['92']}; {'id': '92', 'type': 'call', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'RuntimeError'}; {'id': '94', 'type': 'argument_list', 'children': ['95']}, {'id': '95', 'type': 'concatenated_string', 'children': ['96', '97', '98']}; {'id': '96', 'type': 'string', 'children': [], 'value': "f'{prefix} The default directory ({self.DEFAULTDIR}) '"}, {'id': '97', 'type': 'string', 'children': [], 'value': "f'is not among the available directories '"}; {'id': '98', 'type': 'string', 'children': [], 'value': "f'({objecttools.enumeration(directories)}).'"}, {'id': '99', 'type': 'return_statement', 'children': ['100']}; {'id': '100', 'type': 'attribute', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'self'} | def currentdir(self) -> str:
if self._currentdir is None:
directories = self.availabledirs.folders
if len(directories) == 1:
self.currentdir = directories[0]
elif self.DEFAULTDIR in directories:
self.currentdir = self.DEFAULTDIR
else:
prefix = (f'The current working directory of the '
f'{objecttools.classname(self)} object '
f'has not been defined manually and cannot '
f'be determined automatically:')
if not directories:
raise RuntimeError(
f'{prefix} `{objecttools.repr_(self.basepath)}` '
f'does not contain any available directories.')
if self.DEFAULTDIR is None:
raise RuntimeError(
f'{prefix} `{objecttools.repr_(self.basepath)}` '
f'does contain multiple available directories '
f'({objecttools.enumeration(directories)}).')
raise RuntimeError(
f'{prefix} The default directory ({self.DEFAULTDIR}) '
f'is not among the available directories '
f'({objecttools.enumeration(directories)}).')
return self._currentdir |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'zip_currentdir'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'type', 'children': ['6']}; {'id': '6', 'type': 'None', 'children': []}, {'id': '7', 'type': 'block', 'children': ['8', '48']}; {'id': '8', 'type': 'with_statement', 'children': ['9', '21']}, {'id': '9', 'type': 'with_clause', 'children': ['10']}; {'id': '10', 'type': 'with_item', 'children': ['11']}, {'id': '11', 'type': 'as_pattern', 'children': ['12', '19']}; {'id': '12', 'type': 'call', 'children': ['13', '16']}, {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'zipfile'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'ZipFile'}; {'id': '16', 'type': 'argument_list', 'children': ['17', '18']}, {'id': '17', 'type': 'string', 'children': [], 'value': "f'{self.currentpath}.zip'"}; {'id': '18', 'type': 'string', 'children': [], 'value': "'w'"}, {'id': '19', 'type': 'as_pattern_target', 'children': ['20']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'zipfile_'}, {'id': '21', 'type': 'block', 'children': ['22']}; {'id': '22', 'type': 'for_statement', 'children': ['23', '26', '35']}, {'id': '23', 'type': 'pattern_list', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'filepath'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'filename'}; {'id': '26', 'type': 'call', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'zip'}; {'id': '28', 'type': 'argument_list', 'children': ['29', '32']}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'filepaths'}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'filenames'}, {'id': '35', 'type': 'block', 'children': ['36']}; {'id': '36', 'type': 'expression_statement', 'children': ['37']}, {'id': '37', 'type': 'call', 'children': ['38', '41']}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'zipfile_'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'write'}, {'id': '41', 'type': 'argument_list', 'children': ['42', '45']}; {'id': '42', 'type': 'keyword_argument', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'filename'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'filepath'}, {'id': '45', 'type': 'keyword_argument', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'arcname'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'filename'}; {'id': '48', 'type': 'delete_statement', 'children': ['49']}, {'id': '49', 'type': 'attribute', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'currentdir'} | def zip_currentdir(self) -> None:
with zipfile.ZipFile(f'{self.currentpath}.zip', 'w') as zipfile_:
for filepath, filename in zip(self.filepaths, self.filenames):
zipfile_.write(filename=filepath, arcname=filename)
del self.currentdir |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5', '11']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'keywords'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'type', 'children': ['6']}; {'id': '6', 'type': 'generic_type', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'Set'}; {'id': '8', 'type': 'type_parameter', 'children': ['9']}, {'id': '9', 'type': 'type', 'children': ['10']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '11', 'type': 'block', 'children': ['12']}; {'id': '12', 'type': 'return_statement', 'children': ['13']}, {'id': '13', 'type': 'call', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '15', 'type': 'generator_expression', 'children': ['16', '17', '20', '25']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'keyword'}, {'id': '17', 'type': 'for_in_clause', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'device'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '20', 'type': 'for_in_clause', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'keyword'}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'device'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'keywords'}, {'id': '25', 'type': 'if_clause', 'children': ['26']}; {'id': '26', 'type': 'comparison_operator', 'children': ['27', '28'], 'value': 'not'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'keyword'}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'} | def keywords(self) -> Set[str]:
return set(keyword for device in self
for keyword in device.keywords if
keyword not in self._shadowed_keywords) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5', '11']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'variables'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'type', 'children': ['6']}; {'id': '6', 'type': 'generic_type', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'Set'}; {'id': '8', 'type': 'type_parameter', 'children': ['9']}, {'id': '9', 'type': 'type', 'children': ['10']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '11', 'type': 'block', 'children': ['12', '24', '39']}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}, {'id': '13', 'type': 'assignment', 'children': ['14', '15', '21']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'variables'}, {'id': '15', 'type': 'type', 'children': ['16']}; {'id': '16', 'type': 'generic_type', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'Set'}; {'id': '18', 'type': 'type_parameter', 'children': ['19']}, {'id': '19', 'type': 'type', 'children': ['20']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '21', 'type': 'call', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '23', 'type': 'argument_list', 'children': []}; {'id': '24', 'type': 'for_statement', 'children': ['25', '26', '29']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'connection'}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': '__connections'}, {'id': '29', 'type': 'block', 'children': ['30']}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}, {'id': '31', 'type': 'call', 'children': ['32', '35']}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'variables'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'update'}, {'id': '35', 'type': 'argument_list', 'children': ['36']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'connection'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'variables'}, {'id': '39', 'type': 'return_statement', 'children': ['40']} | def variables(self) -> Set[str]:
variables: Set[str] = set()
for connection in self.__connections:
variables.update(connection.variables)
return variables |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5', '23']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'model2subs2seqs'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'type', 'children': ['6']}; {'id': '6', 'type': 'generic_type', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'Dict'}; {'id': '8', 'type': 'type_parameter', 'children': ['9', '11']}, {'id': '9', 'type': 'type', 'children': ['10']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '11', 'type': 'type', 'children': ['12']}; {'id': '12', 'type': 'generic_type', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'Dict'}; {'id': '14', 'type': 'type_parameter', 'children': ['15', '17']}, {'id': '15', 'type': 'type', 'children': ['16']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '17', 'type': 'type', 'children': ['18']}; {'id': '18', 'type': 'generic_type', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'List'}; {'id': '20', 'type': 'type_parameter', 'children': ['21']}, {'id': '21', 'type': 'type', 'children': ['22']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '23', 'type': 'block', 'children': ['24', '39', '100']}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}, {'id': '25', 'type': 'assignment', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'model2subs2seqs'}, {'id': '27', 'type': 'call', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'collections'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'defaultdict'}, {'id': '31', 'type': 'argument_list', 'children': ['32']}; {'id': '32', 'type': 'lambda', 'children': ['33']}, {'id': '33', 'type': 'call', 'children': ['34', '37']}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'collections'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'defaultdict'}, {'id': '37', 'type': 'argument_list', 'children': ['38']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '39', 'type': 'for_statement', 'children': ['40', '41', '47']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'model'}, {'id': '41', 'type': 'call', 'children': ['42', '45']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'find'}, {'id': '45', 'type': 'argument_list', 'children': ['46']}; {'id': '46', 'type': 'string', 'children': [], 'value': "'sequences'"}, {'id': '47', 'type': 'block', 'children': ['48', '57', '63']}; {'id': '48', 'type': 'expression_statement', 'children': ['49']}, {'id': '49', 'type': 'assignment', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'model_name'}, {'id': '51', 'type': 'call', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'strip'}, {'id': '53', 'type': 'argument_list', 'children': ['54']}; {'id': '54', 'type': 'attribute', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'model'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'tag'}, {'id': '57', 'type': 'if_statement', 'children': ['58', '61']}; {'id': '58', 'type': 'comparison_operator', 'children': ['59', '60'], 'value': '=='}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'model_name'}; {'id': '60', 'type': 'string', 'children': [], 'value': "'node'"}, {'id': '61', 'type': 'block', 'children': ['62']}; {'id': '62', 'type': 'continue_statement', 'children': []}, {'id': '63', 'type': 'for_statement', 'children': ['64', '65', '66']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'group'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'model'}; {'id': '66', 'type': 'block', 'children': ['67', '76']}, {'id': '67', 'type': 'expression_statement', 'children': ['68']}; {'id': '68', 'type': 'assignment', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'group_name'}; {'id': '70', 'type': 'call', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'strip'}; {'id': '72', 'type': 'argument_list', 'children': ['73']}, {'id': '73', 'type': 'attribute', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'group'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'tag'}; {'id': '76', 'type': 'for_statement', 'children': ['77', '78', '79']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'sequence'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'group'}, {'id': '79', 'type': 'block', 'children': ['80', '89']}; {'id': '80', 'type': 'expression_statement', 'children': ['81']}, {'id': '81', 'type': 'assignment', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'seq_name'}, {'id': '83', 'type': 'call', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'strip'}, {'id': '85', 'type': 'argument_list', 'children': ['86']}; {'id': '86', 'type': 'attribute', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'sequence'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'tag'}, {'id': '89', 'type': 'expression_statement', 'children': ['90']}; {'id': '90', 'type': 'call', 'children': ['91', '98']}, {'id': '91', 'type': 'attribute', 'children': ['92', '97']}; {'id': '92', 'type': 'subscript', 'children': ['93', '96']}, {'id': '93', 'type': 'subscript', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'model2subs2seqs'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'model_name'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'group_name'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '98', 'type': 'argument_list', 'children': ['99']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'seq_name'}; {'id': '100', 'type': 'return_statement', 'children': ['101']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'model2subs2seqs'} | def model2subs2seqs(self) -> Dict[str, Dict[str, List[str]]]:
model2subs2seqs = collections.defaultdict(
lambda: collections.defaultdict(list))
for model in self.find('sequences'):
model_name = strip(model.tag)
if model_name == 'node':
continue
for group in model:
group_name = strip(group.tag)
for sequence in group:
seq_name = strip(sequence.tag)
model2subs2seqs[model_name][group_name].append(seq_name)
return model2subs2seqs |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5', '17']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'subs2seqs'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'type', 'children': ['6']}; {'id': '6', 'type': 'generic_type', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'Dict'}; {'id': '8', 'type': 'type_parameter', 'children': ['9', '11']}, {'id': '9', 'type': 'type', 'children': ['10']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '11', 'type': 'type', 'children': ['12']}; {'id': '12', 'type': 'generic_type', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'List'}; {'id': '14', 'type': 'type_parameter', 'children': ['15']}, {'id': '15', 'type': 'type', 'children': ['16']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '17', 'type': 'block', 'children': ['18', '27', '40', '63']}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}, {'id': '19', 'type': 'assignment', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'subs2seqs'}, {'id': '21', 'type': 'call', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'collections'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'defaultdict'}, {'id': '25', 'type': 'argument_list', 'children': ['26']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'assignment', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'nodes'}; {'id': '30', 'type': 'call', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'find'}; {'id': '32', 'type': 'argument_list', 'children': ['33', '39']}, {'id': '33', 'type': 'call', 'children': ['34', '37']}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'find'}, {'id': '37', 'type': 'argument_list', 'children': ['38']}; {'id': '38', 'type': 'string', 'children': [], 'value': "'sequences'"}, {'id': '39', 'type': 'string', 'children': [], 'value': "'node'"}; {'id': '40', 'type': 'if_statement', 'children': ['41', '44']}, {'id': '41', 'type': 'comparison_operator', 'children': ['42', '43'], 'value': 'is'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'nodes'}, {'id': '43', 'type': 'None', 'children': []}; {'id': '44', 'type': 'block', 'children': ['45']}, {'id': '45', 'type': 'for_statement', 'children': ['46', '47', '48']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'seq'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'nodes'}; {'id': '48', 'type': 'block', 'children': ['49']}, {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'call', 'children': ['51', '56']}, {'id': '51', 'type': 'attribute', 'children': ['52', '55']}; {'id': '52', 'type': 'subscript', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'subs2seqs'}; {'id': '54', 'type': 'string', 'children': [], 'value': "'node'"}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '56', 'type': 'argument_list', 'children': ['57']}, {'id': '57', 'type': 'call', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'strip'}, {'id': '59', 'type': 'argument_list', 'children': ['60']}; {'id': '60', 'type': 'attribute', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'seq'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'tag'}, {'id': '63', 'type': 'return_statement', 'children': ['64']} | def subs2seqs(self) -> Dict[str, List[str]]:
subs2seqs = collections.defaultdict(list)
nodes = find(self.find('sequences'), 'node')
if nodes is not None:
for seq in nodes:
subs2seqs['node'].append(strip(seq.tag))
return subs2seqs |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '4', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_modelnames'}, {'id': '3', 'type': 'parameters', 'children': []}; {'id': '4', 'type': 'type', 'children': ['5']}, {'id': '5', 'type': 'generic_type', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'List'}, {'id': '7', 'type': 'type_parameter', 'children': ['8']}; {'id': '8', 'type': 'type', 'children': ['9']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '10', 'type': 'block', 'children': ['11']}, {'id': '11', 'type': 'return_statement', 'children': ['12']}; {'id': '12', 'type': 'call', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '14', 'type': 'generator_expression', 'children': ['15', '26', '38']}, {'id': '15', 'type': 'call', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '17', 'type': 'argument_list', 'children': ['18']}; {'id': '18', 'type': 'subscript', 'children': ['19', '25']}, {'id': '19', 'type': 'call', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'fn'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'split'}, {'id': '23', 'type': 'argument_list', 'children': ['24']}; {'id': '24', 'type': 'string', 'children': [], 'value': "'.'"}, {'id': '25', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '26', 'type': 'for_in_clause', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'fn'}; {'id': '28', 'type': 'call', 'children': ['29', '32']}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'listdir'}; {'id': '32', 'type': 'argument_list', 'children': ['33']}, {'id': '33', 'type': 'subscript', 'children': ['34', '37']}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'models'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': '__path__'}, {'id': '37', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '38', 'type': 'if_clause', 'children': ['39']}, {'id': '39', 'type': 'parenthesized_expression', 'children': ['40']}; {'id': '40', 'type': 'boolean_operator', 'children': ['41', '47'], 'value': 'and'}, {'id': '41', 'type': 'call', 'children': ['42', '45']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'fn'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'endswith'}, {'id': '45', 'type': 'argument_list', 'children': ['46']}; {'id': '46', 'type': 'string', 'children': [], 'value': "'.py'"}, {'id': '47', 'type': 'parenthesized_expression', 'children': ['48']}; {'id': '48', 'type': 'comparison_operator', 'children': ['49', '50'], 'value': '!='}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'fn'} | def get_modelnames() -> List[str]:
return sorted(str(fn.split('.')[0])
for fn in os.listdir(models.__path__[0])
if (fn.endswith('.py') and (fn != '__init__.py'))) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5', '15']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'toys'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'type', 'children': ['6']}; {'id': '6', 'type': 'generic_type', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'Tuple'}; {'id': '8', 'type': 'type_parameter', 'children': ['9', '13']}, {'id': '9', 'type': 'type', 'children': ['10']}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'timetools'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'TOY'}, {'id': '13', 'type': 'type', 'children': ['14']}; {'id': '14', 'type': 'ellipsis', 'children': [], 'value': '...'}, {'id': '15', 'type': 'block', 'children': ['16']}; {'id': '16', 'type': 'return_statement', 'children': ['17']}, {'id': '17', 'type': 'call', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'tuple'}, {'id': '19', 'type': 'generator_expression', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'toy'}, {'id': '21', 'type': 'for_in_clause', 'children': ['22', '25']}; {'id': '22', 'type': 'tuple_pattern', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'toy'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': '_'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'self'} | def toys(self) -> Tuple[timetools.TOY, ...]:
return tuple(toy for (toy, _) in self) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'collect_variables'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'selections'}; {'id': '6', 'type': 'type', 'children': ['7']}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'call', 'children': ['11', '14']}, {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'insert_variables'}; {'id': '14', 'type': 'argument_list', 'children': ['15', '18', '21']}, {'id': '15', 'type': 'attribute', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'device2target'}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'targetspecs'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'selections'} | def collect_variables(self, selections) -> None:
self.insert_variables(self.device2target, self.targetspecs, selections) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'collect_variables'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'selections'}; {'id': '6', 'type': 'type', 'children': ['7']}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9', '18']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'call', 'children': ['11', '16']}, {'id': '11', 'type': 'attribute', 'children': ['12', '15']}; {'id': '12', 'type': 'call', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'super'}; {'id': '14', 'type': 'argument_list', 'children': []}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'collect_variables'}; {'id': '16', 'type': 'argument_list', 'children': ['17']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'selections'}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}, {'id': '19', 'type': 'call', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'insert_variables'}, {'id': '23', 'type': 'argument_list', 'children': ['24', '27', '30']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'device2base'}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'basespecs'} | def collect_variables(self, selections) -> None:
super().collect_variables(selections)
self.insert_variables(self.device2base, self.basespecs, selections) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'save_controls'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'parameterstep'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'simulationstep'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'auxfiler'}, {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'block', 'children': ['15']}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'call', 'children': ['17', '22']}, {'id': '17', 'type': 'attribute', 'children': ['18', '21']}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'elements'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'save_controls'}; {'id': '22', 'type': 'argument_list', 'children': ['23', '26', '29']}, {'id': '23', 'type': 'keyword_argument', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'parameterstep'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'parameterstep'}; {'id': '26', 'type': 'keyword_argument', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'simulationstep'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'simulationstep'}, {'id': '29', 'type': 'keyword_argument', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'auxfiler'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'auxfiler'} | def save_controls(self, parameterstep=None, simulationstep=None,
auxfiler=None):
self.elements.save_controls(parameterstep=parameterstep,
simulationstep=simulationstep,
auxfiler=auxfiler) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'variables'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '13', '28']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'variables'}, {'id': '9', 'type': 'call', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '11', 'type': 'argument_list', 'children': ['12']}; {'id': '12', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '13', 'type': 'for_statement', 'children': ['14', '15', '18']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '15', 'type': 'attribute', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'nodes'}; {'id': '18', 'type': 'block', 'children': ['19']}, {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'call', 'children': ['21', '24']}, {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'variables'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'add'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}, {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'variable'}; {'id': '28', 'type': 'return_statement', 'children': ['29']}, {'id': '29', 'type': 'call', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '31', 'type': 'argument_list', 'children': ['32']} | def variables(self):
variables = set([])
for node in self.nodes:
variables.add(node.variable)
return sorted(variables) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7', '15']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_timeplaceentries'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'timeentry'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'placeentry'}, {'id': '7', 'type': 'type', 'children': ['8']}; {'id': '8', 'type': 'generic_type', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'Tuple'}; {'id': '10', 'type': 'type_parameter', 'children': ['11', '13']}, {'id': '11', 'type': 'type', 'children': ['12']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'Any'}, {'id': '13', 'type': 'type', 'children': ['14']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'Any'}, {'id': '15', 'type': 'block', 'children': ['16', '25']}; {'id': '16', 'type': 'if_statement', 'children': ['17', '20']}, {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': '_timeaxis'}; {'id': '20', 'type': 'block', 'children': ['21']}, {'id': '21', 'type': 'return_statement', 'children': ['22']}; {'id': '22', 'type': 'expression_list', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'placeentry'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'timeentry'}, {'id': '25', 'type': 'return_statement', 'children': ['26']}; {'id': '26', 'type': 'expression_list', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'timeentry'} | def sort_timeplaceentries(self, timeentry, placeentry) -> Tuple[Any, Any]:
if self._timeaxis:
return placeentry, timeentry
return timeentry, placeentry |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '4', '16']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'prepare_io_example_1'}, {'id': '3', 'type': 'parameters', 'children': []}; {'id': '4', 'type': 'type', 'children': ['5']}, {'id': '5', 'type': 'generic_type', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'Tuple'}, {'id': '7', 'type': 'type_parameter', 'children': ['8', '12']}; {'id': '8', 'type': 'type', 'children': ['9']}, {'id': '9', 'type': 'attribute', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'devicetools'}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'Nodes'}; {'id': '12', 'type': 'type', 'children': ['13']}, {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'devicetools'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'Elements'}; {'id': '16', 'type': 'block', 'children': ['17', '22', '28', '35', '45', '92', '103', '116', '123', '133', '141', '151', '161', '171', '180', '188', '197', '206', '215', '222', '268', '306', '367', '370', '374', '418', '434']}, {'id': '17', 'type': 'import_from_statement', 'children': ['18', '20']}; {'id': '18', 'type': 'dotted_name', 'children': ['19']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'hydpy'}; {'id': '20', 'type': 'dotted_name', 'children': ['21']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'TestIO'}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}, {'id': '23', 'type': 'call', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'TestIO'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'clear'}, {'id': '27', 'type': 'argument_list', 'children': []}; {'id': '28', 'type': 'import_from_statement', 'children': ['29', '33']}, {'id': '29', 'type': 'dotted_name', 'children': ['30', '31', '32']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'hydpy'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'core'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'filetools'}, {'id': '33', 'type': 'dotted_name', 'children': ['34']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'SequenceManager'}, {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'assignment', 'children': ['37', '42']}, {'id': '37', 'type': 'attribute', 'children': ['38', '41']}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'hydpy'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'pub'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'sequencemanager'}; {'id': '42', 'type': 'call', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'SequenceManager'}; {'id': '44', 'type': 'argument_list', 'children': []}, {'id': '45', 'type': 'with_statement', 'children': ['46', '51']}; {'id': '46', 'type': 'with_clause', 'children': ['47']}, {'id': '47', 'type': 'with_item', 'children': ['48']}; {'id': '48', 'type': 'call', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'TestIO'}; {'id': '50', 'type': 'argument_list', 'children': []}, {'id': '51', 'type': 'block', 'children': ['52', '62', '72', '82']}; {'id': '52', 'type': 'expression_statement', 'children': ['53']}, {'id': '53', 'type': 'assignment', 'children': ['54', '61']}; {'id': '54', 'type': 'attribute', 'children': ['55', '60']}, {'id': '55', 'type': 'attribute', 'children': ['56', '59']}; {'id': '56', 'type': 'attribute', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'hydpy'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'pub'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'sequencemanager'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'inputdirpath'}, {'id': '61', 'type': 'string', 'children': [], 'value': "'inputpath'"}; {'id': '62', 'type': 'expression_statement', 'children': ['63']}, {'id': '63', 'type': 'assignment', 'children': ['64', '71']}; {'id': '64', 'type': 'attribute', 'children': ['65', '70']}, {'id': '65', 'type': 'attribute', 'children': ['66', '69']}; {'id': '66', 'type': 'attribute', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'hydpy'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'pub'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'sequencemanager'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'fluxdirpath'}, {'id': '71', 'type': 'string', 'children': [], 'value': "'outputpath'"}; {'id': '72', 'type': 'expression_statement', 'children': ['73']}, {'id': '73', 'type': 'assignment', 'children': ['74', '81']}; {'id': '74', 'type': 'attribute', 'children': ['75', '80']}, {'id': '75', 'type': 'attribute', 'children': ['76', '79']}; {'id': '76', 'type': 'attribute', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'hydpy'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'pub'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'sequencemanager'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'statedirpath'}, {'id': '81', 'type': 'string', 'children': [], 'value': "'outputpath'"}; {'id': '82', 'type': 'expression_statement', 'children': ['83']}, {'id': '83', 'type': 'assignment', 'children': ['84', '91']}; {'id': '84', 'type': 'attribute', 'children': ['85', '90']}, {'id': '85', 'type': 'attribute', 'children': ['86', '89']}; {'id': '86', 'type': 'attribute', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'hydpy'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'pub'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'sequencemanager'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'nodedirpath'}, {'id': '91', 'type': 'string', 'children': [], 'value': "'nodepath'"}; {'id': '92', 'type': 'expression_statement', 'children': ['93']}, {'id': '93', 'type': 'assignment', 'children': ['94', '99']}; {'id': '94', 'type': 'attribute', 'children': ['95', '98']}, {'id': '95', 'type': 'attribute', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'hydpy'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'pub'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'timegrids'}, {'id': '99', 'type': 'expression_list', 'children': ['100', '101', '102']}; {'id': '100', 'type': 'string', 'children': [], 'value': "'2000-01-01'"}, {'id': '101', 'type': 'string', 'children': [], 'value': "'2000-01-05'"}; {'id': '102', 'type': 'string', 'children': [], 'value': "'1d'"}, {'id': '103', 'type': 'import_from_statement', 'children': ['104', '106', '108', '110', '112', '114']}; {'id': '104', 'type': 'dotted_name', 'children': ['105']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'hydpy'}; {'id': '106', 'type': 'dotted_name', 'children': ['107']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'Node'}; {'id': '108', 'type': 'dotted_name', 'children': ['109']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'Nodes'}; {'id': '110', 'type': 'dotted_name', 'children': ['111']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'Element'}; {'id': '112', 'type': 'dotted_name', 'children': ['113']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'Elements'}; {'id': '114', 'type': 'dotted_name', 'children': ['115']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'prepare_model'}; {'id': '116', 'type': 'expression_statement', 'children': ['117']}, {'id': '117', 'type': 'assignment', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'node1'}, {'id': '119', 'type': 'call', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'Node'}, {'id': '121', 'type': 'argument_list', 'children': ['122']}; {'id': '122', 'type': 'string', 'children': [], 'value': "'node1'"}, {'id': '123', 'type': 'expression_statement', 'children': ['124']}; {'id': '124', 'type': 'assignment', 'children': ['125', '126']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'node2'}; {'id': '126', 'type': 'call', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'Node'}; {'id': '128', 'type': 'argument_list', 'children': ['129', '130']}, {'id': '129', 'type': 'string', 'children': [], 'value': "'node2'"}; {'id': '130', 'type': 'keyword_argument', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'variable'}; {'id': '132', 'type': 'string', 'children': [], 'value': "'T'"}, {'id': '133', 'type': 'expression_statement', 'children': ['134']}; {'id': '134', 'type': 'assignment', 'children': ['135', '136']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'nodes'}; {'id': '136', 'type': 'call', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'Nodes'}; {'id': '138', 'type': 'argument_list', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'node1'}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'node2'}, {'id': '141', 'type': 'expression_statement', 'children': ['142']}; {'id': '142', 'type': 'assignment', 'children': ['143', '144']}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'element1'}; {'id': '144', 'type': 'call', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'Element'}; {'id': '146', 'type': 'argument_list', 'children': ['147', '148']}, {'id': '147', 'type': 'string', 'children': [], 'value': "'element1'"}; {'id': '148', 'type': 'keyword_argument', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'outlets'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'node1'}, {'id': '151', 'type': 'expression_statement', 'children': ['152']}; {'id': '152', 'type': 'assignment', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'element2'}; {'id': '154', 'type': 'call', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'Element'}; {'id': '156', 'type': 'argument_list', 'children': ['157', '158']}, {'id': '157', 'type': 'string', 'children': [], 'value': "'element2'"}; {'id': '158', 'type': 'keyword_argument', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'outlets'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'node1'}, {'id': '161', 'type': 'expression_statement', 'children': ['162']}; {'id': '162', 'type': 'assignment', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'element3'}; {'id': '164', 'type': 'call', 'children': ['165', '166']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'Element'}; {'id': '166', 'type': 'argument_list', 'children': ['167', '168']}, {'id': '167', 'type': 'string', 'children': [], 'value': "'element3'"}; {'id': '168', 'type': 'keyword_argument', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'outlets'}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'node1'}, {'id': '171', 'type': 'expression_statement', 'children': ['172']}; {'id': '172', 'type': 'assignment', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'elements'}; {'id': '174', 'type': 'call', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'Elements'}; {'id': '176', 'type': 'argument_list', 'children': ['177', '178', '179']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'element1'}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'element2'}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'element3'}; {'id': '180', 'type': 'import_from_statement', 'children': ['181', '184', '186']}, {'id': '181', 'type': 'dotted_name', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'hydpy'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'models'}; {'id': '184', 'type': 'dotted_name', 'children': ['185']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'lland_v1'}; {'id': '186', 'type': 'dotted_name', 'children': ['187']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'lland_v2'}; {'id': '188', 'type': 'expression_statement', 'children': ['189']}, {'id': '189', 'type': 'assignment', 'children': ['190', '193']}; {'id': '190', 'type': 'attribute', 'children': ['191', '192']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'element1'}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'model'}, {'id': '193', 'type': 'call', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'prepare_model'}, {'id': '195', 'type': 'argument_list', 'children': ['196']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'lland_v1'}, {'id': '197', 'type': 'expression_statement', 'children': ['198']}; {'id': '198', 'type': 'assignment', 'children': ['199', '202']}, {'id': '199', 'type': 'attribute', 'children': ['200', '201']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'element2'}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'model'}; {'id': '202', 'type': 'call', 'children': ['203', '204']}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'prepare_model'}; {'id': '204', 'type': 'argument_list', 'children': ['205']}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'lland_v1'}; {'id': '206', 'type': 'expression_statement', 'children': ['207']}, {'id': '207', 'type': 'assignment', 'children': ['208', '211']}; {'id': '208', 'type': 'attribute', 'children': ['209', '210']}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'element3'}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'model'}, {'id': '211', 'type': 'call', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'prepare_model'}, {'id': '213', 'type': 'argument_list', 'children': ['214']}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'lland_v2'}, {'id': '215', 'type': 'import_from_statement', 'children': ['216', '220']}; {'id': '216', 'type': 'dotted_name', 'children': ['217', '218', '219']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'hydpy'}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'models'}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'lland'}; {'id': '220', 'type': 'dotted_name', 'children': ['221']}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'ACKER'}; {'id': '222', 'type': 'for_statement', 'children': ['223', '226', '230']}, {'id': '223', 'type': 'pattern_list', 'children': ['224', '225']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'idx'}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'element'}; {'id': '226', 'type': 'call', 'children': ['227', '228']}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'enumerate'}; {'id': '228', 'type': 'argument_list', 'children': ['229']}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'elements'}; {'id': '230', 'type': 'block', 'children': ['231', '239', '250', '259']}, {'id': '231', 'type': 'expression_statement', 'children': ['232']}; {'id': '232', 'type': 'assignment', 'children': ['233', '234']}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'parameters'}; {'id': '234', 'type': 'attribute', 'children': ['235', '238']}, {'id': '235', 'type': 'attribute', 'children': ['236', '237']}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'element'}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'model'}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'parameters'}, {'id': '239', 'type': 'expression_statement', 'children': ['240']}; {'id': '240', 'type': 'call', 'children': ['241', '246']}, {'id': '241', 'type': 'attribute', 'children': ['242', '245']}; {'id': '242', 'type': 'attribute', 'children': ['243', '244']}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'parameters'}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'control'}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'nhru'}; {'id': '246', 'type': 'argument_list', 'children': ['247']}, {'id': '247', 'type': 'binary_operator', 'children': ['248', '249'], 'value': '+'}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'idx'}, {'id': '249', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '250', 'type': 'expression_statement', 'children': ['251']}, {'id': '251', 'type': 'call', 'children': ['252', '257']}; {'id': '252', 'type': 'attribute', 'children': ['253', '256']}, {'id': '253', 'type': 'attribute', 'children': ['254', '255']}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'parameters'}, {'id': '255', 'type': 'identifier', 'children': [], 'value': 'control'}; {'id': '256', 'type': 'identifier', 'children': [], 'value': 'lnk'}, {'id': '257', 'type': 'argument_list', 'children': ['258']}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'ACKER'}, {'id': '259', 'type': 'expression_statement', 'children': ['260']}; {'id': '260', 'type': 'call', 'children': ['261', '266']}, {'id': '261', 'type': 'attribute', 'children': ['262', '265']}; {'id': '262', 'type': 'attribute', 'children': ['263', '264']}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'parameters'}; {'id': '264', 'type': 'identifier', 'children': [], 'value': 'derived'}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'absfhru'}; {'id': '266', 'type': 'argument_list', 'children': ['267']}, {'id': '267', 'type': 'float', 'children': [], 'value': '10.0'}; {'id': '268', 'type': 'with_statement', 'children': ['269', '281']}, {'id': '269', 'type': 'with_clause', 'children': ['270']}; {'id': '270', 'type': 'with_item', 'children': ['271']}, {'id': '271', 'type': 'call', 'children': ['272', '279']}; {'id': '272', 'type': 'attribute', 'children': ['273', '278']}, {'id': '273', 'type': 'attribute', 'children': ['274', '277']}; {'id': '274', 'type': 'attribute', 'children': ['275', '276']}, {'id': '275', 'type': 'identifier', 'children': [], 'value': 'hydpy'}; {'id': '276', 'type': 'identifier', 'children': [], 'value': 'pub'}, {'id': '277', 'type': 'identifier', 'children': [], 'value': 'options'}; {'id': '278', 'type': 'identifier', 'children': [], 'value': 'printprogress'}, {'id': '279', 'type': 'argument_list', 'children': ['280']}; {'id': '280', 'type': 'False', 'children': []}, {'id': '281', 'type': 'block', 'children': ['282', '288', '294', '300']}; {'id': '282', 'type': 'expression_statement', 'children': ['283']}, {'id': '283', 'type': 'call', 'children': ['284', '287']}; {'id': '284', 'type': 'attribute', 'children': ['285', '286']}, {'id': '285', 'type': 'identifier', 'children': [], 'value': 'nodes'}; {'id': '286', 'type': 'identifier', 'children': [], 'value': 'prepare_simseries'}, {'id': '287', 'type': 'argument_list', 'children': []}; {'id': '288', 'type': 'expression_statement', 'children': ['289']}, {'id': '289', 'type': 'call', 'children': ['290', '293']}; {'id': '290', 'type': 'attribute', 'children': ['291', '292']}, {'id': '291', 'type': 'identifier', 'children': [], 'value': 'elements'}; {'id': '292', 'type': 'identifier', 'children': [], 'value': 'prepare_inputseries'}, {'id': '293', 'type': 'argument_list', 'children': []}; {'id': '294', 'type': 'expression_statement', 'children': ['295']}, {'id': '295', 'type': 'call', 'children': ['296', '299']}; {'id': '296', 'type': 'attribute', 'children': ['297', '298']}, {'id': '297', 'type': 'identifier', 'children': [], 'value': 'elements'}; {'id': '298', 'type': 'identifier', 'children': [], 'value': 'prepare_fluxseries'}, {'id': '299', 'type': 'argument_list', 'children': []}; {'id': '300', 'type': 'expression_statement', 'children': ['301']}, {'id': '301', 'type': 'call', 'children': ['302', '305']}; {'id': '302', 'type': 'attribute', 'children': ['303', '304']}, {'id': '303', 'type': 'identifier', 'children': [], 'value': 'elements'}; {'id': '304', 'type': 'identifier', 'children': [], 'value': 'prepare_stateseries'}, {'id': '305', 'type': 'argument_list', 'children': []}; {'id': '306', 'type': 'function_definition', 'children': ['307', '308', '311']}, {'id': '307', 'type': 'function_name', 'children': [], 'value': 'init_values'}; {'id': '308', 'type': 'parameters', 'children': ['309', '310']}, {'id': '309', 'type': 'identifier', 'children': [], 'value': 'seq'}; {'id': '310', 'type': 'identifier', 'children': [], 'value': 'value1_'}, {'id': '311', 'type': 'block', 'children': ['312', '327', '340', '353', '365']}; {'id': '312', 'type': 'expression_statement', 'children': ['313']}, {'id': '313', 'type': 'assignment', 'children': ['314', '315']}; {'id': '314', 'type': 'identifier', 'children': [], 'value': 'value2_'}, {'id': '315', 'type': 'binary_operator', 'children': ['316', '317'], 'value': '+'}; {'id': '316', 'type': 'identifier', 'children': [], 'value': 'value1_'}, {'id': '317', 'type': 'call', 'children': ['318', '319']}; {'id': '318', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '319', 'type': 'argument_list', 'children': ['320']}; {'id': '320', 'type': 'call', 'children': ['321', '326']}, {'id': '321', 'type': 'attribute', 'children': ['322', '325']}; {'id': '322', 'type': 'attribute', 'children': ['323', '324']}, {'id': '323', 'type': 'identifier', 'children': [], 'value': 'seq'}; {'id': '324', 'type': 'identifier', 'children': [], 'value': 'series'}, {'id': '325', 'type': 'identifier', 'children': [], 'value': 'flatten'}; {'id': '326', 'type': 'argument_list', 'children': []}, {'id': '327', 'type': 'expression_statement', 'children': ['328']}; {'id': '328', 'type': 'assignment', 'children': ['329', '330']}, {'id': '329', 'type': 'identifier', 'children': [], 'value': 'values_'}; {'id': '330', 'type': 'call', 'children': ['331', '334']}, {'id': '331', 'type': 'attribute', 'children': ['332', '333']}; {'id': '332', 'type': 'identifier', 'children': [], 'value': 'numpy'}, {'id': '333', 'type': 'identifier', 'children': [], 'value': 'arange'}; {'id': '334', 'type': 'argument_list', 'children': ['335', '336', '337']}, {'id': '335', 'type': 'identifier', 'children': [], 'value': 'value1_'}; {'id': '336', 'type': 'identifier', 'children': [], 'value': 'value2_'}, {'id': '337', 'type': 'keyword_argument', 'children': ['338', '339']}; {'id': '338', 'type': 'identifier', 'children': [], 'value': 'dtype'}, {'id': '339', 'type': 'identifier', 'children': [], 'value': 'float'}; {'id': '340', 'type': 'expression_statement', 'children': ['341']}, {'id': '341', 'type': 'assignment', 'children': ['342', '345']}; {'id': '342', 'type': 'attribute', 'children': ['343', '344']}, {'id': '343', 'type': 'identifier', 'children': [], 'value': 'seq'}; {'id': '344', 'type': 'identifier', 'children': [], 'value': 'testarray'}, {'id': '345', 'type': 'call', 'children': ['346', '349']}; {'id': '346', 'type': 'attribute', 'children': ['347', '348']}, {'id': '347', 'type': 'identifier', 'children': [], 'value': 'values_'}; {'id': '348', 'type': 'identifier', 'children': [], 'value': 'reshape'}, {'id': '349', 'type': 'argument_list', 'children': ['350']}; {'id': '350', 'type': 'attribute', 'children': ['351', '352']}, {'id': '351', 'type': 'identifier', 'children': [], 'value': 'seq'}; {'id': '352', 'type': 'identifier', 'children': [], 'value': 'seriesshape'}, {'id': '353', 'type': 'expression_statement', 'children': ['354']}; {'id': '354', 'type': 'assignment', 'children': ['355', '358']}, {'id': '355', 'type': 'attribute', 'children': ['356', '357']}; {'id': '356', 'type': 'identifier', 'children': [], 'value': 'seq'}, {'id': '357', 'type': 'identifier', 'children': [], 'value': 'series'}; {'id': '358', 'type': 'call', 'children': ['359', '364']}, {'id': '359', 'type': 'attribute', 'children': ['360', '363']}; {'id': '360', 'type': 'attribute', 'children': ['361', '362']}, {'id': '361', 'type': 'identifier', 'children': [], 'value': 'seq'}; {'id': '362', 'type': 'identifier', 'children': [], 'value': 'testarray'}, {'id': '363', 'type': 'identifier', 'children': [], 'value': 'copy'}; {'id': '364', 'type': 'argument_list', 'children': []}, {'id': '365', 'type': 'return_statement', 'children': ['366']}; {'id': '366', 'type': 'identifier', 'children': [], 'value': 'value2_'}, {'id': '367', 'type': 'import_statement', 'children': ['368']}; {'id': '368', 'type': 'dotted_name', 'children': ['369']}, {'id': '369', 'type': 'identifier', 'children': [], 'value': 'numpy'}; {'id': '370', 'type': 'expression_statement', 'children': ['371']}, {'id': '371', 'type': 'assignment', 'children': ['372', '373']}; {'id': '372', 'type': 'identifier', 'children': [], 'value': 'value1'}, {'id': '373', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '374', 'type': 'for_statement', 'children': ['375', '378', '389']}, {'id': '375', 'type': 'pattern_list', 'children': ['376', '377']}; {'id': '376', 'type': 'identifier', 'children': [], 'value': 'subname'}, {'id': '377', 'type': 'identifier', 'children': [], 'value': 'seqname'}; {'id': '378', 'type': 'call', 'children': ['379', '380']}, {'id': '379', 'type': 'identifier', 'children': [], 'value': 'zip'}; {'id': '380', 'type': 'argument_list', 'children': ['381', '385']}, {'id': '381', 'type': 'list', 'children': ['382', '383', '384'], 'value': "['inputs', 'fluxes', 'states']"}; {'id': '382', 'type': 'string', 'children': [], 'value': "'inputs'"}, {'id': '383', 'type': 'string', 'children': [], 'value': "'fluxes'"}; {'id': '384', 'type': 'string', 'children': [], 'value': "'states'"}, {'id': '385', 'type': 'list', 'children': ['386', '387', '388'], 'value': "['nied', 'nkor', 'bowa']"}; {'id': '386', 'type': 'string', 'children': [], 'value': "'nied'"}, {'id': '387', 'type': 'string', 'children': [], 'value': "'nkor'"}; {'id': '388', 'type': 'string', 'children': [], 'value': "'bowa'"}, {'id': '389', 'type': 'block', 'children': ['390']}; {'id': '390', 'type': 'for_statement', 'children': ['391', '392', '393']}, {'id': '391', 'type': 'identifier', 'children': [], 'value': 'element'}; {'id': '392', 'type': 'identifier', 'children': [], 'value': 'elements'}, {'id': '393', 'type': 'block', 'children': ['394', '406']}; {'id': '394', 'type': 'expression_statement', 'children': ['395']}, {'id': '395', 'type': 'assignment', 'children': ['396', '397']}; {'id': '396', 'type': 'identifier', 'children': [], 'value': 'subseqs'}, {'id': '397', 'type': 'call', 'children': ['398', '399']}; {'id': '398', 'type': 'identifier', 'children': [], 'value': 'getattr'}, {'id': '399', 'type': 'argument_list', 'children': ['400', '405']}; {'id': '400', 'type': 'attribute', 'children': ['401', '404']}, {'id': '401', 'type': 'attribute', 'children': ['402', '403']}; {'id': '402', 'type': 'identifier', 'children': [], 'value': 'element'}, {'id': '403', 'type': 'identifier', 'children': [], 'value': 'model'}; {'id': '404', 'type': 'identifier', 'children': [], 'value': 'sequences'}, {'id': '405', 'type': 'identifier', 'children': [], 'value': 'subname'}; {'id': '406', 'type': 'expression_statement', 'children': ['407']}, {'id': '407', 'type': 'assignment', 'children': ['408', '409']}; {'id': '408', 'type': 'identifier', 'children': [], 'value': 'value1'}, {'id': '409', 'type': 'call', 'children': ['410', '411']}; {'id': '410', 'type': 'identifier', 'children': [], 'value': 'init_values'}, {'id': '411', 'type': 'argument_list', 'children': ['412', '417']}; {'id': '412', 'type': 'call', 'children': ['413', '414']}, {'id': '413', 'type': 'identifier', 'children': [], 'value': 'getattr'}; {'id': '414', 'type': 'argument_list', 'children': ['415', '416']}, {'id': '415', 'type': 'identifier', 'children': [], 'value': 'subseqs'}; {'id': '416', 'type': 'identifier', 'children': [], 'value': 'seqname'}, {'id': '417', 'type': 'identifier', 'children': [], 'value': 'value1'}; {'id': '418', 'type': 'for_statement', 'children': ['419', '420', '421']}, {'id': '419', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '420', 'type': 'identifier', 'children': [], 'value': 'nodes'}, {'id': '421', 'type': 'block', 'children': ['422']}; {'id': '422', 'type': 'expression_statement', 'children': ['423']}, {'id': '423', 'type': 'assignment', 'children': ['424', '425']}; {'id': '424', 'type': 'identifier', 'children': [], 'value': 'value1'}, {'id': '425', 'type': 'call', 'children': ['426', '427']}; {'id': '426', 'type': 'identifier', 'children': [], 'value': 'init_values'}, {'id': '427', 'type': 'argument_list', 'children': ['428', '433']}; {'id': '428', 'type': 'attribute', 'children': ['429', '432']}, {'id': '429', 'type': 'attribute', 'children': ['430', '431']}; {'id': '430', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '431', 'type': 'identifier', 'children': [], 'value': 'sequences'}; {'id': '432', 'type': 'identifier', 'children': [], 'value': 'sim'}, {'id': '433', 'type': 'identifier', 'children': [], 'value': 'value1'}; {'id': '434', 'type': 'return_statement', 'children': ['435']}, {'id': '435', 'type': 'expression_list', 'children': ['436', '437']}; {'id': '436', 'type': 'identifier', 'children': [], 'value': 'nodes'}, {'id': '437', 'type': 'identifier', 'children': [], 'value': 'elements'} | def prepare_io_example_1() -> Tuple[devicetools.Nodes, devicetools.Elements]:
from hydpy import TestIO
TestIO.clear()
from hydpy.core.filetools import SequenceManager
hydpy.pub.sequencemanager = SequenceManager()
with TestIO():
hydpy.pub.sequencemanager.inputdirpath = 'inputpath'
hydpy.pub.sequencemanager.fluxdirpath = 'outputpath'
hydpy.pub.sequencemanager.statedirpath = 'outputpath'
hydpy.pub.sequencemanager.nodedirpath = 'nodepath'
hydpy.pub.timegrids = '2000-01-01', '2000-01-05', '1d'
from hydpy import Node, Nodes, Element, Elements, prepare_model
node1 = Node('node1')
node2 = Node('node2', variable='T')
nodes = Nodes(node1, node2)
element1 = Element('element1', outlets=node1)
element2 = Element('element2', outlets=node1)
element3 = Element('element3', outlets=node1)
elements = Elements(element1, element2, element3)
from hydpy.models import lland_v1, lland_v2
element1.model = prepare_model(lland_v1)
element2.model = prepare_model(lland_v1)
element3.model = prepare_model(lland_v2)
from hydpy.models.lland import ACKER
for idx, element in enumerate(elements):
parameters = element.model.parameters
parameters.control.nhru(idx+1)
parameters.control.lnk(ACKER)
parameters.derived.absfhru(10.0)
with hydpy.pub.options.printprogress(False):
nodes.prepare_simseries()
elements.prepare_inputseries()
elements.prepare_fluxseries()
elements.prepare_stateseries()
def init_values(seq, value1_):
value2_ = value1_ + len(seq.series.flatten())
values_ = numpy.arange(value1_, value2_, dtype=float)
seq.testarray = values_.reshape(seq.seriesshape)
seq.series = seq.testarray.copy()
return value2_
import numpy
value1 = 0
for subname, seqname in zip(['inputs', 'fluxes', 'states'],
['nied', 'nkor', 'bowa']):
for element in elements:
subseqs = getattr(element.model.sequences, subname)
value1 = init_values(getattr(subseqs, seqname), value1)
for node in nodes:
value1 = init_values(node.sequences.sim, value1)
return nodes, elements |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '29']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'comparison_table'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17', '20', '23', '26']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'caption'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'label'}; {'id': '10', 'type': 'string', 'children': [], 'value': '"tab:model_comp"'}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'hlines'}, {'id': '13', 'type': 'True', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'aic'}; {'id': '16', 'type': 'True', 'children': []}, {'id': '17', 'type': 'default_parameter', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'bic'}, {'id': '19', 'type': 'True', 'children': []}; {'id': '20', 'type': 'default_parameter', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'dic'}; {'id': '22', 'type': 'True', 'children': []}, {'id': '23', 'type': 'default_parameter', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '25', 'type': 'string', 'children': [], 'value': '"bic"'}; {'id': '26', 'type': 'default_parameter', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'descending'}; {'id': '28', 'type': 'True', 'children': []}, {'id': '29', 'type': 'block', 'children': ['30', '38', '46', '54', '63', '72', '80', '84', '100', '109', '113', '117', '124', '149', '158', '187', '216', '245', '281', '298', '314', '324', '334', '343', '352', '365', '418', '427']}; {'id': '30', 'type': 'if_statement', 'children': ['31', '34']}, {'id': '31', 'type': 'comparison_operator', 'children': ['32', '33'], 'value': '=='}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '33', 'type': 'string', 'children': [], 'value': '"bic"'}; {'id': '34', 'type': 'block', 'children': ['35']}, {'id': '35', 'type': 'assert_statement', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'bic'}, {'id': '37', 'type': 'string', 'children': [], 'value': '"You cannot sort by BIC if you turn it off"'}; {'id': '38', 'type': 'if_statement', 'children': ['39', '42']}, {'id': '39', 'type': 'comparison_operator', 'children': ['40', '41'], 'value': '=='}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '41', 'type': 'string', 'children': [], 'value': '"aic"'}; {'id': '42', 'type': 'block', 'children': ['43']}, {'id': '43', 'type': 'assert_statement', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'aic'}, {'id': '45', 'type': 'string', 'children': [], 'value': '"You cannot sort by AIC if you turn it off"'}; {'id': '46', 'type': 'if_statement', 'children': ['47', '50']}, {'id': '47', 'type': 'comparison_operator', 'children': ['48', '49'], 'value': '=='}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '49', 'type': 'string', 'children': [], 'value': '"dic"'}; {'id': '50', 'type': 'block', 'children': ['51']}, {'id': '51', 'type': 'assert_statement', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'dic'}, {'id': '53', 'type': 'string', 'children': [], 'value': '"You cannot sort by DIC if you turn it off"'}; {'id': '54', 'type': 'if_statement', 'children': ['55', '58']}, {'id': '55', 'type': 'comparison_operator', 'children': ['56', '57'], 'value': 'is'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'caption'}, {'id': '57', 'type': 'None', 'children': []}; {'id': '58', 'type': 'block', 'children': ['59']}, {'id': '59', 'type': 'expression_statement', 'children': ['60']}; {'id': '60', 'type': 'assignment', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'caption'}; {'id': '62', 'type': 'string', 'children': [], 'value': '""'}, {'id': '63', 'type': 'if_statement', 'children': ['64', '67']}; {'id': '64', 'type': 'comparison_operator', 'children': ['65', '66'], 'value': 'is'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'label'}; {'id': '66', 'type': 'None', 'children': []}, {'id': '67', 'type': 'block', 'children': ['68']}; {'id': '68', 'type': 'expression_statement', 'children': ['69']}, {'id': '69', 'type': 'assignment', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'label'}, {'id': '71', 'type': 'string', 'children': [], 'value': '""'}; {'id': '72', 'type': 'expression_statement', 'children': ['73']}, {'id': '73', 'type': 'assignment', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'base_string'}, {'id': '75', 'type': 'call', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'get_latex_table_frame'}, {'id': '77', 'type': 'argument_list', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'caption'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'label'}; {'id': '80', 'type': 'expression_statement', 'children': ['81']}, {'id': '81', 'type': 'assignment', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'end_text'}, {'id': '83', 'type': 'string', 'children': [], 'value': '" \\\\\\\\ \\n"'}; {'id': '84', 'type': 'expression_statement', 'children': ['85']}, {'id': '85', 'type': 'assignment', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'num_cols'}, {'id': '87', 'type': 'binary_operator', 'children': ['88', '95'], 'value': '+'}; {'id': '88', 'type': 'binary_operator', 'children': ['89', '90'], 'value': '+'}, {'id': '89', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '90', 'type': 'parenthesized_expression', 'children': ['91']}, {'id': '91', 'type': 'conditional_expression', 'children': ['92', '93', '94'], 'value': 'if'}; {'id': '92', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'aic'}; {'id': '94', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '95', 'type': 'parenthesized_expression', 'children': ['96']}; {'id': '96', 'type': 'conditional_expression', 'children': ['97', '98', '99'], 'value': 'if'}, {'id': '97', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'bic'}, {'id': '99', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '100', 'type': 'expression_statement', 'children': ['101']}, {'id': '101', 'type': 'assignment', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'column_text'}, {'id': '103', 'type': 'binary_operator', 'children': ['104', '105'], 'value': '*'}; {'id': '104', 'type': 'string', 'children': [], 'value': '"c"'}, {'id': '105', 'type': 'parenthesized_expression', 'children': ['106']}; {'id': '106', 'type': 'binary_operator', 'children': ['107', '108'], 'value': '+'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'num_cols'}; {'id': '108', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '109', 'type': 'expression_statement', 'children': ['110']}; {'id': '110', 'type': 'assignment', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'center_text'}; {'id': '112', 'type': 'string', 'children': [], 'value': '""'}, {'id': '113', 'type': 'expression_statement', 'children': ['114']}; {'id': '114', 'type': 'assignment', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'hline_text'}; {'id': '116', 'type': 'string', 'children': [], 'value': '"\\\\hline\\n"'}, {'id': '117', 'type': 'if_statement', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'hlines'}, {'id': '119', 'type': 'block', 'children': ['120']}; {'id': '120', 'type': 'expression_statement', 'children': ['121']}, {'id': '121', 'type': 'augmented_assignment', 'children': ['122', '123'], 'value': '+='}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'center_text'}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'hline_text'}; {'id': '124', 'type': 'expression_statement', 'children': ['125']}, {'id': '125', 'type': 'augmented_assignment', 'children': ['126', '127'], 'value': '+='}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'center_text'}, {'id': '127', 'type': 'binary_operator', 'children': ['128', '148'], 'value': '+'}; {'id': '128', 'type': 'binary_operator', 'children': ['129', '142', '143'], 'value': '+'}, {'id': '129', 'type': 'binary_operator', 'children': ['130', '137'], 'value': '+'}; {'id': '130', 'type': 'binary_operator', 'children': ['131', '132'], 'value': '+'}, {'id': '131', 'type': 'string', 'children': [], 'value': '"\\tModel"'}; {'id': '132', 'type': 'parenthesized_expression', 'children': ['133']}, {'id': '133', 'type': 'conditional_expression', 'children': ['134', '135', '136'], 'value': 'if'}; {'id': '134', 'type': 'string', 'children': [], 'value': '" & AIC"'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'aic'}; {'id': '136', 'type': 'string', 'children': [], 'value': '""'}, {'id': '137', 'type': 'parenthesized_expression', 'children': ['138']}; {'id': '138', 'type': 'conditional_expression', 'children': ['139', '140', '141'], 'value': 'if'}, {'id': '139', 'type': 'string', 'children': [], 'value': '" & BIC "'}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'bic'}, {'id': '141', 'type': 'string', 'children': [], 'value': '""'}; {'id': '142', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '143', 'type': 'parenthesized_expression', 'children': ['144']}; {'id': '144', 'type': 'conditional_expression', 'children': ['145', '146', '147'], 'value': 'if'}, {'id': '145', 'type': 'string', 'children': [], 'value': '" & DIC "'}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'dic'}, {'id': '147', 'type': 'string', 'children': [], 'value': '""'}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'end_text'}, {'id': '149', 'type': 'if_statement', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'hlines'}, {'id': '151', 'type': 'block', 'children': ['152']}; {'id': '152', 'type': 'expression_statement', 'children': ['153']}, {'id': '153', 'type': 'augmented_assignment', 'children': ['154', '155'], 'value': '+='}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'center_text'}, {'id': '155', 'type': 'binary_operator', 'children': ['156', '157'], 'value': '+'}; {'id': '156', 'type': 'string', 'children': [], 'value': '"\\t"'}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'hline_text'}; {'id': '158', 'type': 'if_statement', 'children': ['159', '160', '169']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'aic'}; {'id': '160', 'type': 'block', 'children': ['161']}, {'id': '161', 'type': 'expression_statement', 'children': ['162']}; {'id': '162', 'type': 'assignment', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'aics'}; {'id': '164', 'type': 'call', 'children': ['165', '168']}, {'id': '165', 'type': 'attribute', 'children': ['166', '167']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'aic'}; {'id': '168', 'type': 'argument_list', 'children': []}, {'id': '169', 'type': 'else_clause', 'children': ['170']}; {'id': '170', 'type': 'block', 'children': ['171']}, {'id': '171', 'type': 'expression_statement', 'children': ['172']}; {'id': '172', 'type': 'assignment', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'aics'}; {'id': '174', 'type': 'call', 'children': ['175', '178']}, {'id': '175', 'type': 'attribute', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'zeros'}; {'id': '178', 'type': 'argument_list', 'children': ['179']}, {'id': '179', 'type': 'call', 'children': ['180', '181']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '181', 'type': 'argument_list', 'children': ['182']}; {'id': '182', 'type': 'attribute', 'children': ['183', '186']}, {'id': '183', 'type': 'attribute', 'children': ['184', '185']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'parent'}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'chains'}, {'id': '187', 'type': 'if_statement', 'children': ['188', '189', '198']}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'bic'}, {'id': '189', 'type': 'block', 'children': ['190']}; {'id': '190', 'type': 'expression_statement', 'children': ['191']}, {'id': '191', 'type': 'assignment', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'bics'}, {'id': '193', 'type': 'call', 'children': ['194', '197']}; {'id': '194', 'type': 'attribute', 'children': ['195', '196']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'bic'}, {'id': '197', 'type': 'argument_list', 'children': []}; {'id': '198', 'type': 'else_clause', 'children': ['199']}, {'id': '199', 'type': 'block', 'children': ['200']}; {'id': '200', 'type': 'expression_statement', 'children': ['201']}, {'id': '201', 'type': 'assignment', 'children': ['202', '203']}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'bics'}, {'id': '203', 'type': 'call', 'children': ['204', '207']}; {'id': '204', 'type': 'attribute', 'children': ['205', '206']}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'zeros'}, {'id': '207', 'type': 'argument_list', 'children': ['208']}; {'id': '208', 'type': 'call', 'children': ['209', '210']}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '210', 'type': 'argument_list', 'children': ['211']}, {'id': '211', 'type': 'attribute', 'children': ['212', '215']}; {'id': '212', 'type': 'attribute', 'children': ['213', '214']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'parent'}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'chains'}; {'id': '216', 'type': 'if_statement', 'children': ['217', '218', '227']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'dic'}; {'id': '218', 'type': 'block', 'children': ['219']}, {'id': '219', 'type': 'expression_statement', 'children': ['220']}; {'id': '220', 'type': 'assignment', 'children': ['221', '222']}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'dics'}; {'id': '222', 'type': 'call', 'children': ['223', '226']}, {'id': '223', 'type': 'attribute', 'children': ['224', '225']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'dic'}; {'id': '226', 'type': 'argument_list', 'children': []}, {'id': '227', 'type': 'else_clause', 'children': ['228']}; {'id': '228', 'type': 'block', 'children': ['229']}, {'id': '229', 'type': 'expression_statement', 'children': ['230']}; {'id': '230', 'type': 'assignment', 'children': ['231', '232']}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'dics'}; {'id': '232', 'type': 'call', 'children': ['233', '236']}, {'id': '233', 'type': 'attribute', 'children': ['234', '235']}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'zeros'}; {'id': '236', 'type': 'argument_list', 'children': ['237']}, {'id': '237', 'type': 'call', 'children': ['238', '239']}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '239', 'type': 'argument_list', 'children': ['240']}; {'id': '240', 'type': 'attribute', 'children': ['241', '244']}, {'id': '241', 'type': 'attribute', 'children': ['242', '243']}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'parent'}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'chains'}, {'id': '245', 'type': 'if_statement', 'children': ['246', '249', '254', '263', '272']}; {'id': '246', 'type': 'comparison_operator', 'children': ['247', '248'], 'value': '=='}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '248', 'type': 'string', 'children': [], 'value': '"bic"'}, {'id': '249', 'type': 'block', 'children': ['250']}; {'id': '250', 'type': 'expression_statement', 'children': ['251']}, {'id': '251', 'type': 'assignment', 'children': ['252', '253']}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'to_sort'}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'bics'}; {'id': '254', 'type': 'elif_clause', 'children': ['255', '258']}, {'id': '255', 'type': 'comparison_operator', 'children': ['256', '257'], 'value': '=='}; {'id': '256', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '257', 'type': 'string', 'children': [], 'value': '"aic"'}; {'id': '258', 'type': 'block', 'children': ['259']}, {'id': '259', 'type': 'expression_statement', 'children': ['260']}; {'id': '260', 'type': 'assignment', 'children': ['261', '262']}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'to_sort'}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'aics'}, {'id': '263', 'type': 'elif_clause', 'children': ['264', '267']}; {'id': '264', 'type': 'comparison_operator', 'children': ['265', '266'], 'value': '=='}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '266', 'type': 'string', 'children': [], 'value': '"dic"'}, {'id': '267', 'type': 'block', 'children': ['268']}; {'id': '268', 'type': 'expression_statement', 'children': ['269']}, {'id': '269', 'type': 'assignment', 'children': ['270', '271']}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'to_sort'}, {'id': '271', 'type': 'identifier', 'children': [], 'value': 'dics'}; {'id': '272', 'type': 'else_clause', 'children': ['273']}, {'id': '273', 'type': 'block', 'children': ['274']}; {'id': '274', 'type': 'raise_statement', 'children': ['275']}, {'id': '275', 'type': 'call', 'children': ['276', '277']}; {'id': '276', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '277', 'type': 'argument_list', 'children': ['278']}; {'id': '278', 'type': 'binary_operator', 'children': ['279', '280'], 'value': '%'}, {'id': '279', 'type': 'string', 'children': [], 'value': '"sort %s not recognised, must be dic, aic or dic"'}; {'id': '280', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '281', 'type': 'expression_statement', 'children': ['282']}; {'id': '282', 'type': 'assignment', 'children': ['283', '284']}, {'id': '283', 'type': 'identifier', 'children': [], 'value': 'good'}; {'id': '284', 'type': 'list_comprehension', 'children': ['285', '286', '294']}, {'id': '285', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '286', 'type': 'for_in_clause', 'children': ['287', '290']}, {'id': '287', 'type': 'pattern_list', 'children': ['288', '289']}; {'id': '288', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 't'}; {'id': '290', 'type': 'call', 'children': ['291', '292']}, {'id': '291', 'type': 'identifier', 'children': [], 'value': 'enumerate'}; {'id': '292', 'type': 'argument_list', 'children': ['293']}, {'id': '293', 'type': 'identifier', 'children': [], 'value': 'to_sort'}; {'id': '294', 'type': 'if_clause', 'children': ['295']}, {'id': '295', 'type': 'comparison_operator', 'children': ['296', '297'], 'value': 'is'}; {'id': '296', 'type': 'identifier', 'children': [], 'value': 't'}, {'id': '297', 'type': 'None', 'children': []}; {'id': '298', 'type': 'expression_statement', 'children': ['299']}, {'id': '299', 'type': 'assignment', 'children': ['300', '301']}; {'id': '300', 'type': 'identifier', 'children': [], 'value': 'names'}, {'id': '301', 'type': 'list_comprehension', 'children': ['302', '311']}; {'id': '302', 'type': 'attribute', 'children': ['303', '310']}, {'id': '303', 'type': 'subscript', 'children': ['304', '309']}; {'id': '304', 'type': 'attribute', 'children': ['305', '308']}, {'id': '305', 'type': 'attribute', 'children': ['306', '307']}; {'id': '306', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '307', 'type': 'identifier', 'children': [], 'value': 'parent'}; {'id': '308', 'type': 'identifier', 'children': [], 'value': 'chains'}, {'id': '309', 'type': 'identifier', 'children': [], 'value': 'g'}; {'id': '310', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '311', 'type': 'for_in_clause', 'children': ['312', '313']}; {'id': '312', 'type': 'identifier', 'children': [], 'value': 'g'}, {'id': '313', 'type': 'identifier', 'children': [], 'value': 'good'}; {'id': '314', 'type': 'expression_statement', 'children': ['315']}, {'id': '315', 'type': 'assignment', 'children': ['316', '317']}; {'id': '316', 'type': 'identifier', 'children': [], 'value': 'aics'}, {'id': '317', 'type': 'list_comprehension', 'children': ['318', '321']}; {'id': '318', 'type': 'subscript', 'children': ['319', '320']}, {'id': '319', 'type': 'identifier', 'children': [], 'value': 'aics'}; {'id': '320', 'type': 'identifier', 'children': [], 'value': 'g'}, {'id': '321', 'type': 'for_in_clause', 'children': ['322', '323']}; {'id': '322', 'type': 'identifier', 'children': [], 'value': 'g'}, {'id': '323', 'type': 'identifier', 'children': [], 'value': 'good'}; {'id': '324', 'type': 'expression_statement', 'children': ['325']}, {'id': '325', 'type': 'assignment', 'children': ['326', '327']}; {'id': '326', 'type': 'identifier', 'children': [], 'value': 'bics'}, {'id': '327', 'type': 'list_comprehension', 'children': ['328', '331']}; {'id': '328', 'type': 'subscript', 'children': ['329', '330']}, {'id': '329', 'type': 'identifier', 'children': [], 'value': 'bics'}; {'id': '330', 'type': 'identifier', 'children': [], 'value': 'g'}, {'id': '331', 'type': 'for_in_clause', 'children': ['332', '333']}; {'id': '332', 'type': 'identifier', 'children': [], 'value': 'g'}, {'id': '333', 'type': 'identifier', 'children': [], 'value': 'good'}; {'id': '334', 'type': 'expression_statement', 'children': ['335']}, {'id': '335', 'type': 'assignment', 'children': ['336', '337']}; {'id': '336', 'type': 'identifier', 'children': [], 'value': 'to_sort'}, {'id': '337', 'type': 'conditional_expression', 'children': ['338', '339', '342'], 'value': 'if'}; {'id': '338', 'type': 'identifier', 'children': [], 'value': 'bics'}, {'id': '339', 'type': 'comparison_operator', 'children': ['340', '341'], 'value': '=='}; {'id': '340', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '341', 'type': 'string', 'children': [], 'value': '"bic"'}; {'id': '342', 'type': 'identifier', 'children': [], 'value': 'aics'}, {'id': '343', 'type': 'expression_statement', 'children': ['344']}; {'id': '344', 'type': 'assignment', 'children': ['345', '346']}, {'id': '345', 'type': 'identifier', 'children': [], 'value': 'indexes'}; {'id': '346', 'type': 'call', 'children': ['347', '350']}, {'id': '347', 'type': 'attribute', 'children': ['348', '349']}; {'id': '348', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '349', 'type': 'identifier', 'children': [], 'value': 'argsort'}; {'id': '350', 'type': 'argument_list', 'children': ['351']}, {'id': '351', 'type': 'identifier', 'children': [], 'value': 'to_sort'}; {'id': '352', 'type': 'if_statement', 'children': ['353', '354']}, {'id': '353', 'type': 'identifier', 'children': [], 'value': 'descending'}; {'id': '354', 'type': 'block', 'children': ['355']}, {'id': '355', 'type': 'expression_statement', 'children': ['356']}; {'id': '356', 'type': 'assignment', 'children': ['357', '358']}, {'id': '357', 'type': 'identifier', 'children': [], 'value': 'indexes'}; {'id': '358', 'type': 'subscript', 'children': ['359', '360']}, {'id': '359', 'type': 'identifier', 'children': [], 'value': 'indexes'}; {'id': '360', 'type': 'slice', 'children': ['361', '362', '363']}, {'id': '361', 'type': 'colon', 'children': []}; {'id': '362', 'type': 'colon', 'children': []}, {'id': '363', 'type': 'unary_operator', 'children': ['364'], 'value': '-'}; {'id': '364', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '365', 'type': 'for_statement', 'children': ['366', '367', '368']}; {'id': '366', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '367', 'type': 'identifier', 'children': [], 'value': 'indexes'}; {'id': '368', 'type': 'block', 'children': ['369', '377', '388', '399', '410', '414']}, {'id': '369', 'type': 'expression_statement', 'children': ['370']}; {'id': '370', 'type': 'assignment', 'children': ['371', '372']}, {'id': '371', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '372', 'type': 'binary_operator', 'children': ['373', '374'], 'value': '+'}, {'id': '373', 'type': 'string', 'children': [], 'value': '"\\t"'}; {'id': '374', 'type': 'subscript', 'children': ['375', '376']}, {'id': '375', 'type': 'identifier', 'children': [], 'value': 'names'}; {'id': '376', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '377', 'type': 'if_statement', 'children': ['378', '379']}; {'id': '378', 'type': 'identifier', 'children': [], 'value': 'aic'}, {'id': '379', 'type': 'block', 'children': ['380']}; {'id': '380', 'type': 'expression_statement', 'children': ['381']}, {'id': '381', 'type': 'augmented_assignment', 'children': ['382', '383'], 'value': '+='}; {'id': '382', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '383', 'type': 'binary_operator', 'children': ['384', '385'], 'value': '%'}; {'id': '384', 'type': 'string', 'children': [], 'value': '" & %5.1f "'}, {'id': '385', 'type': 'subscript', 'children': ['386', '387']}; {'id': '386', 'type': 'identifier', 'children': [], 'value': 'aics'}, {'id': '387', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '388', 'type': 'if_statement', 'children': ['389', '390']}, {'id': '389', 'type': 'identifier', 'children': [], 'value': 'bic'}; {'id': '390', 'type': 'block', 'children': ['391']}, {'id': '391', 'type': 'expression_statement', 'children': ['392']}; {'id': '392', 'type': 'augmented_assignment', 'children': ['393', '394'], 'value': '+='}, {'id': '393', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '394', 'type': 'binary_operator', 'children': ['395', '396'], 'value': '%'}, {'id': '395', 'type': 'string', 'children': [], 'value': '" & %5.1f "'}; {'id': '396', 'type': 'subscript', 'children': ['397', '398']}, {'id': '397', 'type': 'identifier', 'children': [], 'value': 'bics'}; {'id': '398', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '399', 'type': 'if_statement', 'children': ['400', '401']}; {'id': '400', 'type': 'identifier', 'children': [], 'value': 'dic'}, {'id': '401', 'type': 'block', 'children': ['402']}; {'id': '402', 'type': 'expression_statement', 'children': ['403']}, {'id': '403', 'type': 'augmented_assignment', 'children': ['404', '405'], 'value': '+='}; {'id': '404', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '405', 'type': 'binary_operator', 'children': ['406', '407'], 'value': '%'}; {'id': '406', 'type': 'string', 'children': [], 'value': '" & %5.1f "'}, {'id': '407', 'type': 'subscript', 'children': ['408', '409']}; {'id': '408', 'type': 'identifier', 'children': [], 'value': 'dics'}, {'id': '409', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '410', 'type': 'expression_statement', 'children': ['411']}, {'id': '411', 'type': 'augmented_assignment', 'children': ['412', '413'], 'value': '+='}; {'id': '412', 'type': 'identifier', 'children': [], 'value': 'line'}, {'id': '413', 'type': 'identifier', 'children': [], 'value': 'end_text'}; {'id': '414', 'type': 'expression_statement', 'children': ['415']}, {'id': '415', 'type': 'augmented_assignment', 'children': ['416', '417'], 'value': '+='}; {'id': '416', 'type': 'identifier', 'children': [], 'value': 'center_text'}, {'id': '417', 'type': 'identifier', 'children': [], 'value': 'line'}; {'id': '418', 'type': 'if_statement', 'children': ['419', '420']}, {'id': '419', 'type': 'identifier', 'children': [], 'value': 'hlines'}; {'id': '420', 'type': 'block', 'children': ['421']}, {'id': '421', 'type': 'expression_statement', 'children': ['422']}; {'id': '422', 'type': 'augmented_assignment', 'children': ['423', '424'], 'value': '+='}, {'id': '423', 'type': 'identifier', 'children': [], 'value': 'center_text'}; {'id': '424', 'type': 'binary_operator', 'children': ['425', '426'], 'value': '+'}, {'id': '425', 'type': 'string', 'children': [], 'value': '"\\t"'}; {'id': '426', 'type': 'identifier', 'children': [], 'value': 'hline_text'}, {'id': '427', 'type': 'return_statement', 'children': ['428']}; {'id': '428', 'type': 'binary_operator', 'children': ['429', '430'], 'value': '%'}, {'id': '429', 'type': 'identifier', 'children': [], 'value': 'base_string'}; {'id': '430', 'type': 'tuple', 'children': ['431', '432']}, {'id': '431', 'type': 'identifier', 'children': [], 'value': 'column_text'} | def comparison_table(self, caption=None, label="tab:model_comp", hlines=True,
aic=True, bic=True, dic=True, sort="bic", descending=True):
if sort == "bic":
assert bic, "You cannot sort by BIC if you turn it off"
if sort == "aic":
assert aic, "You cannot sort by AIC if you turn it off"
if sort == "dic":
assert dic, "You cannot sort by DIC if you turn it off"
if caption is None:
caption = ""
if label is None:
label = ""
base_string = get_latex_table_frame(caption, label)
end_text = " \\\\ \n"
num_cols = 1 + (1 if aic else 0) + (1 if bic else 0)
column_text = "c" * (num_cols + 1)
center_text = ""
hline_text = "\\hline\n"
if hlines:
center_text += hline_text
center_text += "\tModel" + (" & AIC" if aic else "") + (" & BIC " if bic else "") \
+ (" & DIC " if dic else "") + end_text
if hlines:
center_text += "\t" + hline_text
if aic:
aics = self.aic()
else:
aics = np.zeros(len(self.parent.chains))
if bic:
bics = self.bic()
else:
bics = np.zeros(len(self.parent.chains))
if dic:
dics = self.dic()
else:
dics = np.zeros(len(self.parent.chains))
if sort == "bic":
to_sort = bics
elif sort == "aic":
to_sort = aics
elif sort == "dic":
to_sort = dics
else:
raise ValueError("sort %s not recognised, must be dic, aic or dic" % sort)
good = [i for i, t in enumerate(to_sort) if t is not None]
names = [self.parent.chains[g].name for g in good]
aics = [aics[g] for g in good]
bics = [bics[g] for g in good]
to_sort = bics if sort == "bic" else aics
indexes = np.argsort(to_sort)
if descending:
indexes = indexes[::-1]
for i in indexes:
line = "\t" + names[i]
if aic:
line += " & %5.1f " % aics[i]
if bic:
line += " & %5.1f " % bics[i]
if dic:
line += " & %5.1f " % dics[i]
line += end_text
center_text += line
if hlines:
center_text += "\t" + hline_text
return base_string % (column_text, center_text) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_initDevClasses'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '12', '18', '24', '28', '32', '45', '153', '165', '177', '181']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '11']}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': '_devClassTree'}, {'id': '11', 'type': 'dictionary', 'children': []}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}, {'id': '13', 'type': 'assignment', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': '_partitionTree'}, {'id': '17', 'type': 'dictionary', 'children': []}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}, {'id': '19', 'type': 'assignment', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': '_mapDevType'}, {'id': '23', 'type': 'dictionary', 'children': []}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}, {'id': '25', 'type': 'assignment', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'basedevs'}, {'id': '27', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '28', 'type': 'expression_statement', 'children': ['29']}, {'id': '29', 'type': 'assignment', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'otherdevs'}, {'id': '31', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '32', 'type': 'if_statement', 'children': ['33', '38']}, {'id': '33', 'type': 'comparison_operator', 'children': ['34', '37'], 'value': 'is'}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': '_mapMajorDevclass'}, {'id': '37', 'type': 'None', 'children': []}; {'id': '38', 'type': 'block', 'children': ['39']}, {'id': '39', 'type': 'expression_statement', 'children': ['40']}; {'id': '40', 'type': 'call', 'children': ['41', '44']}, {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': '_initBlockMajorMap'}; {'id': '44', 'type': 'argument_list', 'children': []}, {'id': '45', 'type': 'for_statement', 'children': ['46', '47', '50']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'dev'}, {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': '_diskStats'}; {'id': '50', 'type': 'block', 'children': ['51', '59', '72']}, {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'assignment', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'stats'}; {'id': '54', 'type': 'subscript', 'children': ['55', '58']}, {'id': '55', 'type': 'attribute', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': '_diskStats'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'dev'}, {'id': '59', 'type': 'expression_statement', 'children': ['60']}; {'id': '60', 'type': 'assignment', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'devclass'}; {'id': '62', 'type': 'call', 'children': ['63', '68']}, {'id': '63', 'type': 'attribute', 'children': ['64', '67']}; {'id': '64', 'type': 'attribute', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': '_mapMajorDevclass'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '68', 'type': 'argument_list', 'children': ['69']}, {'id': '69', 'type': 'subscript', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'stats'}, {'id': '71', 'type': 'string', 'children': [], 'value': "'major'"}; {'id': '72', 'type': 'if_statement', 'children': ['73', '76']}, {'id': '73', 'type': 'comparison_operator', 'children': ['74', '75'], 'value': 'is'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'devclass'}, {'id': '75', 'type': 'None', 'children': []}; {'id': '76', 'type': 'block', 'children': ['77', '89']}, {'id': '77', 'type': 'expression_statement', 'children': ['78']}; {'id': '78', 'type': 'assignment', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'devdir'}; {'id': '80', 'type': 'call', 'children': ['81', '86']}, {'id': '81', 'type': 'attribute', 'children': ['82', '85']}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '86', 'type': 'argument_list', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'sysfsBlockdevDir'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'dev'}, {'id': '89', 'type': 'if_statement', 'children': ['90', '98', '144']}; {'id': '90', 'type': 'call', 'children': ['91', '96']}, {'id': '91', 'type': 'attribute', 'children': ['92', '95']}; {'id': '92', 'type': 'attribute', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'isdir'}; {'id': '96', 'type': 'argument_list', 'children': ['97']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'devdir'}; {'id': '98', 'type': 'block', 'children': ['99', '118', '129', '137']}, {'id': '99', 'type': 'if_statement', 'children': ['100', '109']}; {'id': '100', 'type': 'not_operator', 'children': ['101']}, {'id': '101', 'type': 'call', 'children': ['102', '107']}; {'id': '102', 'type': 'attribute', 'children': ['103', '106']}, {'id': '103', 'type': 'attribute', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': '_devClassTree'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'has_key'}, {'id': '107', 'type': 'argument_list', 'children': ['108']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'devclass'}, {'id': '109', 'type': 'block', 'children': ['110']}; {'id': '110', 'type': 'expression_statement', 'children': ['111']}, {'id': '111', 'type': 'assignment', 'children': ['112', '117']}; {'id': '112', 'type': 'subscript', 'children': ['113', '116']}, {'id': '113', 'type': 'attribute', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': '_devClassTree'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'devclass'}, {'id': '117', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '118', 'type': 'expression_statement', 'children': ['119']}, {'id': '119', 'type': 'call', 'children': ['120', '127']}; {'id': '120', 'type': 'attribute', 'children': ['121', '126']}, {'id': '121', 'type': 'subscript', 'children': ['122', '125']}; {'id': '122', 'type': 'attribute', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': '_devClassTree'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'devclass'}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '127', 'type': 'argument_list', 'children': ['128']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'dev'}, {'id': '129', 'type': 'expression_statement', 'children': ['130']}; {'id': '130', 'type': 'assignment', 'children': ['131', '136']}, {'id': '131', 'type': 'subscript', 'children': ['132', '135']}; {'id': '132', 'type': 'attribute', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '134', 'type': 'identifier', 'children': [], 'value': '_mapDevType'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'dev'}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'devclass'}, {'id': '137', 'type': 'expression_statement', 'children': ['138']}; {'id': '138', 'type': 'call', 'children': ['139', '142']}, {'id': '139', 'type': 'attribute', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'basedevs'}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '142', 'type': 'argument_list', 'children': ['143']}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'dev'}; {'id': '144', 'type': 'else_clause', 'children': ['145']}, {'id': '145', 'type': 'block', 'children': ['146']}; {'id': '146', 'type': 'expression_statement', 'children': ['147']}, {'id': '147', 'type': 'call', 'children': ['148', '151']}; {'id': '148', 'type': 'attribute', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'otherdevs'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '151', 'type': 'argument_list', 'children': ['152']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'dev'}, {'id': '153', 'type': 'expression_statement', 'children': ['154']}; {'id': '154', 'type': 'call', 'children': ['155', '158']}, {'id': '155', 'type': 'attribute', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'basedevs'}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '158', 'type': 'argument_list', 'children': ['159', '162']}, {'id': '159', 'type': 'keyword_argument', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '162', 'type': 'keyword_argument', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'reverse'}; {'id': '164', 'type': 'True', 'children': []}, {'id': '165', 'type': 'expression_statement', 'children': ['166']}; {'id': '166', 'type': 'call', 'children': ['167', '170']}, {'id': '167', 'type': 'attribute', 'children': ['168', '169']}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'otherdevs'}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '170', 'type': 'argument_list', 'children': ['171', '174']}, {'id': '171', 'type': 'keyword_argument', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '174', 'type': 'keyword_argument', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'reverse'}; {'id': '176', 'type': 'True', 'children': []}, {'id': '177', 'type': 'expression_statement', 'children': ['178']}; {'id': '178', 'type': 'assignment', 'children': ['179', '180']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'idx'}; {'id': '180', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '181', 'type': 'for_statement', 'children': ['182', '183', '184']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'partdev'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'otherdevs'}; {'id': '184', 'type': 'block', 'children': ['185', '199']}, {'id': '185', 'type': 'while_statement', 'children': ['186', '194']}; {'id': '186', 'type': 'comparison_operator', 'children': ['187', '193'], 'value': '>'}, {'id': '187', 'type': 'call', 'children': ['188', '189']}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '189', 'type': 'argument_list', 'children': ['190']}; {'id': '190', 'type': 'subscript', 'children': ['191', '192']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'basedevs'}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'idx'}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'partdev'}; {'id': '194', 'type': 'block', 'children': ['195']}, {'id': '195', 'type': 'expression_statement', 'children': ['196']}; {'id': '196', 'type': 'augmented_assignment', 'children': ['197', '198'], 'value': '+='}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'idx'}; {'id': '198', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '199', 'type': 'for_statement', 'children': ['200', '201', '206']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'dev'}, {'id': '201', 'type': 'subscript', 'children': ['202', '203']}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'basedevs'}, {'id': '203', 'type': 'slice', 'children': ['204', '205']}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'idx'}, {'id': '205', 'type': 'colon', 'children': []}; {'id': '206', 'type': 'block', 'children': ['207']}, {'id': '207', 'type': 'if_statement', 'children': ['208', '217']}; {'id': '208', 'type': 'call', 'children': ['209', '212']}, {'id': '209', 'type': 'attribute', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 're'}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'match'}; {'id': '212', 'type': 'argument_list', 'children': ['213', '216']}, {'id': '213', 'type': 'binary_operator', 'children': ['214', '215'], 'value': '%'}; {'id': '214', 'type': 'string', 'children': [], 'value': '"%s(\\d+|p\\d+)$"'}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'dev'}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'partdev'}, {'id': '217', 'type': 'block', 'children': ['218', '237', '248']}; {'id': '218', 'type': 'if_statement', 'children': ['219', '228']}, {'id': '219', 'type': 'not_operator', 'children': ['220']}; {'id': '220', 'type': 'call', 'children': ['221', '226']}, {'id': '221', 'type': 'attribute', 'children': ['222', '225']}; {'id': '222', 'type': 'attribute', 'children': ['223', '224']}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '224', 'type': 'identifier', 'children': [], 'value': '_partitionTree'}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'has_key'}; {'id': '226', 'type': 'argument_list', 'children': ['227']}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'dev'}; {'id': '228', 'type': 'block', 'children': ['229']}, {'id': '229', 'type': 'expression_statement', 'children': ['230']}; {'id': '230', 'type': 'assignment', 'children': ['231', '236']}, {'id': '231', 'type': 'subscript', 'children': ['232', '235']}; {'id': '232', 'type': 'attribute', 'children': ['233', '234']}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '234', 'type': 'identifier', 'children': [], 'value': '_partitionTree'}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'dev'}; {'id': '236', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '237', 'type': 'expression_statement', 'children': ['238']}; {'id': '238', 'type': 'call', 'children': ['239', '246']}, {'id': '239', 'type': 'attribute', 'children': ['240', '245']}; {'id': '240', 'type': 'subscript', 'children': ['241', '244']}, {'id': '241', 'type': 'attribute', 'children': ['242', '243']}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '243', 'type': 'identifier', 'children': [], 'value': '_partitionTree'}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'dev'}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '246', 'type': 'argument_list', 'children': ['247']}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'partdev'}; {'id': '248', 'type': 'expression_statement', 'children': ['249']}, {'id': '249', 'type': 'assignment', 'children': ['250', '255']}; {'id': '250', 'type': 'subscript', 'children': ['251', '254']}, {'id': '251', 'type': 'attribute', 'children': ['252', '253']}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '253', 'type': 'identifier', 'children': [], 'value': '_mapDevType'}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'partdev'}, {'id': '255', 'type': 'string', 'children': [], 'value': "'part'"} | def _initDevClasses(self):
self._devClassTree = {}
self._partitionTree = {}
self._mapDevType = {}
basedevs = []
otherdevs = []
if self._mapMajorDevclass is None:
self._initBlockMajorMap()
for dev in self._diskStats:
stats = self._diskStats[dev]
devclass = self._mapMajorDevclass.get(stats['major'])
if devclass is not None:
devdir = os.path.join(sysfsBlockdevDir, dev)
if os.path.isdir(devdir):
if not self._devClassTree.has_key(devclass):
self._devClassTree[devclass] = []
self._devClassTree[devclass].append(dev)
self._mapDevType[dev] = devclass
basedevs.append(dev)
else:
otherdevs.append(dev)
basedevs.sort(key=len, reverse=True)
otherdevs.sort(key=len, reverse=True)
idx = 0
for partdev in otherdevs:
while len(basedevs[idx]) > partdev:
idx += 1
for dev in basedevs[idx:]:
if re.match("%s(\d+|p\d+)$" % dev, partdev):
if not self._partitionTree.has_key(dev):
self._partitionTree[dev] = []
self._partitionTree[dev].append(partdev)
self._mapDevType[partdev] = 'part' |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'zdiffstore'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'dest'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'keys'}, {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'withscores'}, {'id': '9', 'type': 'False', 'children': []}; {'id': '10', 'type': 'block', 'children': ['11', '13', '23', '30']}, {'id': '11', 'type': 'expression_statement', 'children': ['12']}; {'id': '12', 'type': 'string', 'children': [], 'value': "'''Compute the difference of multiple sorted.\r\n The difference of sets specified by ``keys`` into a new sorted set\r\n in ``dest``.\r\n '''"}, {'id': '13', 'type': 'expression_statement', 'children': ['14']}; {'id': '14', 'type': 'assignment', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '16', 'type': 'binary_operator', 'children': ['17', '19'], 'value': '+'}, {'id': '17', 'type': 'tuple', 'children': ['18']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'dest'}, {'id': '19', 'type': 'call', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'tuple'}, {'id': '21', 'type': 'argument_list', 'children': ['22']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'keys'}, {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'wscores'}; {'id': '26', 'type': 'conditional_expression', 'children': ['27', '28', '29'], 'value': 'if'}, {'id': '27', 'type': 'string', 'children': [], 'value': "'withscores'"}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'withscores'}, {'id': '29', 'type': 'string', 'children': [], 'value': "''"}; {'id': '30', 'type': 'return_statement', 'children': ['31']}, {'id': '31', 'type': 'call', 'children': ['32', '35']}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'execute_script'}, {'id': '35', 'type': 'argument_list', 'children': ['36', '37', '38', '39']}; {'id': '36', 'type': 'string', 'children': [], 'value': "'zdiffstore'"}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'wscores'}, {'id': '39', 'type': 'keyword_argument', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'withscores'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'withscores'} | def zdiffstore(self, dest, keys, withscores=False):
'''Compute the difference of multiple sorted.
The difference of sets specified by ``keys`` into a new sorted set
in ``dest``.
'''
keys = (dest,) + tuple(keys)
wscores = 'withscores' if withscores else ''
return self.execute_script('zdiffstore', keys, wscores,
withscores=withscores) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '19']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'places_within_radius'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'place'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'latitude'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'longitude'}, {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'radius'}; {'id': '16', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '17', 'type': 'dictionary_splat_pattern', 'children': ['18']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '19', 'type': 'block', 'children': ['20', '26', '32', '38', '46', '56', '119', '123', '166']}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '25']}; {'id': '22', 'type': 'subscript', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '24', 'type': 'string', 'children': [], 'value': "'withdist'"}, {'id': '25', 'type': 'True', 'children': []}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}, {'id': '27', 'type': 'assignment', 'children': ['28', '31']}; {'id': '28', 'type': 'subscript', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '30', 'type': 'string', 'children': [], 'value': "'withcoord'"}, {'id': '31', 'type': 'True', 'children': []}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}, {'id': '33', 'type': 'assignment', 'children': ['34', '37']}; {'id': '34', 'type': 'subscript', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '36', 'type': 'string', 'children': [], 'value': "'withhash'"}, {'id': '37', 'type': 'False', 'children': []}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}, {'id': '39', 'type': 'call', 'children': ['40', '43']}; {'id': '40', 'type': 'attribute', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'setdefault'}, {'id': '43', 'type': 'argument_list', 'children': ['44', '45']}; {'id': '44', 'type': 'string', 'children': [], 'value': "'sort'"}, {'id': '45', 'type': 'string', 'children': [], 'value': "'ASC'"}; {'id': '46', 'type': 'expression_statement', 'children': ['47']}, {'id': '47', 'type': 'assignment', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'unit'}, {'id': '49', 'type': 'call', 'children': ['50', '53']}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'setdefault'}, {'id': '53', 'type': 'argument_list', 'children': ['54', '55']}; {'id': '54', 'type': 'string', 'children': [], 'value': "'unit'"}, {'id': '55', 'type': 'string', 'children': [], 'value': "'km'"}; {'id': '56', 'type': 'if_statement', 'children': ['57', '60', '83', '112']}, {'id': '57', 'type': 'comparison_operator', 'children': ['58', '59'], 'value': 'is'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'place'}, {'id': '59', 'type': 'None', 'children': []}; {'id': '60', 'type': 'block', 'children': ['61']}, {'id': '61', 'type': 'expression_statement', 'children': ['62']}; {'id': '62', 'type': 'assignment', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'response'}; {'id': '64', 'type': 'call', 'children': ['65', '70']}, {'id': '65', 'type': 'attribute', 'children': ['66', '69']}; {'id': '66', 'type': 'attribute', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'redis'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'georadiusbymember'}; {'id': '70', 'type': 'argument_list', 'children': ['71', '74', '80', '81']}, {'id': '71', 'type': 'attribute', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '74', 'type': 'call', 'children': ['75', '78']}, {'id': '75', 'type': 'attribute', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': '_pickle'}; {'id': '78', 'type': 'argument_list', 'children': ['79']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'place'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'radius'}, {'id': '81', 'type': 'dictionary_splat', 'children': ['82']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '83', 'type': 'elif_clause', 'children': ['84', '93']}; {'id': '84', 'type': 'boolean_operator', 'children': ['85', '89'], 'value': 'and'}, {'id': '85', 'type': 'parenthesized_expression', 'children': ['86']}; {'id': '86', 'type': 'comparison_operator', 'children': ['87', '88'], 'value': 'is'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'latitude'}; {'id': '88', 'type': 'None', 'children': []}, {'id': '89', 'type': 'parenthesized_expression', 'children': ['90']}; {'id': '90', 'type': 'comparison_operator', 'children': ['91', '92'], 'value': 'is'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'longitude'}; {'id': '92', 'type': 'None', 'children': []}, {'id': '93', 'type': 'block', 'children': ['94']}; {'id': '94', 'type': 'expression_statement', 'children': ['95']}, {'id': '95', 'type': 'assignment', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'response'}, {'id': '97', 'type': 'call', 'children': ['98', '103']}; {'id': '98', 'type': 'attribute', 'children': ['99', '102']}, {'id': '99', 'type': 'attribute', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'redis'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'georadius'}, {'id': '103', 'type': 'argument_list', 'children': ['104', '107', '108', '109', '110']}; {'id': '104', 'type': 'attribute', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'longitude'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'latitude'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'radius'}; {'id': '110', 'type': 'dictionary_splat', 'children': ['111']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '112', 'type': 'else_clause', 'children': ['113']}, {'id': '113', 'type': 'block', 'children': ['114']}; {'id': '114', 'type': 'raise_statement', 'children': ['115']}, {'id': '115', 'type': 'call', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '117', 'type': 'argument_list', 'children': ['118']}; {'id': '118', 'type': 'string', 'children': [], 'value': "'Must specify place, or both latitude and longitude'"}, {'id': '119', 'type': 'expression_statement', 'children': ['120']}; {'id': '120', 'type': 'assignment', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'ret'}; {'id': '122', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '123', 'type': 'for_statement', 'children': ['124', '125', '126']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'response'}; {'id': '126', 'type': 'block', 'children': ['127']}, {'id': '127', 'type': 'expression_statement', 'children': ['128']}; {'id': '128', 'type': 'call', 'children': ['129', '132']}, {'id': '129', 'type': 'attribute', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'ret'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '132', 'type': 'argument_list', 'children': ['133']}, {'id': '133', 'type': 'dictionary', 'children': ['134', '144', '149', '152', '159']}; {'id': '134', 'type': 'pair', 'children': ['135', '136']}, {'id': '135', 'type': 'string', 'children': [], 'value': "'place'"}; {'id': '136', 'type': 'call', 'children': ['137', '140']}, {'id': '137', 'type': 'attribute', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '139', 'type': 'identifier', 'children': [], 'value': '_unpickle'}; {'id': '140', 'type': 'argument_list', 'children': ['141']}, {'id': '141', 'type': 'subscript', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '143', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '144', 'type': 'pair', 'children': ['145', '146']}, {'id': '145', 'type': 'string', 'children': [], 'value': "'distance'"}; {'id': '146', 'type': 'subscript', 'children': ['147', '148']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '148', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '149', 'type': 'pair', 'children': ['150', '151']}; {'id': '150', 'type': 'string', 'children': [], 'value': "'unit'"}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'unit'}; {'id': '152', 'type': 'pair', 'children': ['153', '154']}, {'id': '153', 'type': 'string', 'children': [], 'value': "'latitude'"}; {'id': '154', 'type': 'subscript', 'children': ['155', '158']}, {'id': '155', 'type': 'subscript', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '157', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '158', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '159', 'type': 'pair', 'children': ['160', '161']}; {'id': '160', 'type': 'string', 'children': [], 'value': "'longitude'"}, {'id': '161', 'type': 'subscript', 'children': ['162', '165']}; {'id': '162', 'type': 'subscript', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '164', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '165', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '166', 'type': 'return_statement', 'children': ['167']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'ret'} | def places_within_radius(
self, place=None, latitude=None, longitude=None, radius=0, **kwargs
):
kwargs['withdist'] = True
kwargs['withcoord'] = True
kwargs['withhash'] = False
kwargs.setdefault('sort', 'ASC')
unit = kwargs.setdefault('unit', 'km')
if place is not None:
response = self.redis.georadiusbymember(
self.key, self._pickle(place), radius, **kwargs
)
elif (latitude is not None) and (longitude is not None):
response = self.redis.georadius(
self.key, longitude, latitude, radius, **kwargs
)
else:
raise ValueError(
'Must specify place, or both latitude and longitude'
)
ret = []
for item in response:
ret.append(
{
'place': self._unpickle(item[0]),
'distance': item[1],
'unit': unit,
'latitude': item[2][1],
'longitude': item[2][0],
}
)
return ret |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'naturalize_person'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'string'}; {'id': '6', 'type': 'block', 'children': ['7', '20', '34', '44', '48', '52', '56', '60', '69', '103', '165', '178', '187']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'suffixes'}; {'id': '10', 'type': 'list', 'children': ['11', '12', '13', '14', '15', '16', '17', '18', '19'], 'value': "[\n 'Jr', 'Jr.', 'Sr', 'Sr.',\n 'I', 'II', 'III', 'IV', 'V',\n ]"}, {'id': '11', 'type': 'string', 'children': [], 'value': "'Jr'"}; {'id': '12', 'type': 'string', 'children': [], 'value': "'Jr.'"}, {'id': '13', 'type': 'string', 'children': [], 'value': "'Sr'"}; {'id': '14', 'type': 'string', 'children': [], 'value': "'Sr.'"}, {'id': '15', 'type': 'string', 'children': [], 'value': "'I'"}; {'id': '16', 'type': 'string', 'children': [], 'value': "'II'"}, {'id': '17', 'type': 'string', 'children': [], 'value': "'III'"}; {'id': '18', 'type': 'string', 'children': [], 'value': "'IV'"}, {'id': '19', 'type': 'string', 'children': [], 'value': "'V'"}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'suffixes'}, {'id': '23', 'type': 'binary_operator', 'children': ['24', '25'], 'value': '+'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'suffixes'}, {'id': '25', 'type': 'list_comprehension', 'children': ['26', '31']}; {'id': '26', 'type': 'call', 'children': ['27', '30']}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 's'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'lower'}; {'id': '30', 'type': 'argument_list', 'children': []}, {'id': '31', 'type': 'for_in_clause', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 's'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'suffixes'}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}, {'id': '35', 'type': 'assignment', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'particles'}, {'id': '37', 'type': 'list', 'children': ['38', '39', '40', '41', '42', '43'], 'value': "[\n 'Le', 'La',\n 'Von', 'Van',\n 'Du', 'De',\n ]"}; {'id': '38', 'type': 'string', 'children': [], 'value': "'Le'"}, {'id': '39', 'type': 'string', 'children': [], 'value': "'La'"}; {'id': '40', 'type': 'string', 'children': [], 'value': "'Von'"}, {'id': '41', 'type': 'string', 'children': [], 'value': "'Van'"}; {'id': '42', 'type': 'string', 'children': [], 'value': "'Du'"}, {'id': '43', 'type': 'string', 'children': [], 'value': "'De'"}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}, {'id': '45', 'type': 'assignment', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'surname'}, {'id': '47', 'type': 'string', 'children': [], 'value': "''"}; {'id': '48', 'type': 'expression_statement', 'children': ['49']}, {'id': '49', 'type': 'assignment', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'names'}, {'id': '51', 'type': 'string', 'children': [], 'value': "''"}; {'id': '52', 'type': 'expression_statement', 'children': ['53']}, {'id': '53', 'type': 'assignment', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'suffix'}, {'id': '55', 'type': 'string', 'children': [], 'value': "''"}; {'id': '56', 'type': 'expression_statement', 'children': ['57']}, {'id': '57', 'type': 'assignment', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'sort_string'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'string'}; {'id': '60', 'type': 'expression_statement', 'children': ['61']}, {'id': '61', 'type': 'assignment', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'parts'}, {'id': '63', 'type': 'call', 'children': ['64', '67']}; {'id': '64', 'type': 'attribute', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'string'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'split'}, {'id': '67', 'type': 'argument_list', 'children': ['68']}; {'id': '68', 'type': 'string', 'children': [], 'value': "' '"}, {'id': '69', 'type': 'if_statement', 'children': ['70', '76']}; {'id': '70', 'type': 'comparison_operator', 'children': ['71', '75'], 'value': 'in'}, {'id': '71', 'type': 'subscript', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'parts'}, {'id': '73', 'type': 'unary_operator', 'children': ['74'], 'value': '-'}; {'id': '74', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'suffixes'}; {'id': '76', 'type': 'block', 'children': ['77', '84', '94']}, {'id': '77', 'type': 'expression_statement', 'children': ['78']}; {'id': '78', 'type': 'assignment', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'suffix'}; {'id': '80', 'type': 'subscript', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'parts'}; {'id': '82', 'type': 'unary_operator', 'children': ['83'], 'value': '-'}, {'id': '83', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '84', 'type': 'expression_statement', 'children': ['85']}, {'id': '85', 'type': 'assignment', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'parts'}, {'id': '87', 'type': 'subscript', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'parts'}, {'id': '89', 'type': 'slice', 'children': ['90', '91', '92']}; {'id': '90', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '91', 'type': 'colon', 'children': []}; {'id': '92', 'type': 'unary_operator', 'children': ['93'], 'value': '-'}, {'id': '93', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '94', 'type': 'expression_statement', 'children': ['95']}, {'id': '95', 'type': 'assignment', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'sort_string'}, {'id': '97', 'type': 'call', 'children': ['98', '101']}; {'id': '98', 'type': 'attribute', 'children': ['99', '100']}, {'id': '99', 'type': 'string', 'children': [], 'value': "' '"}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '101', 'type': 'argument_list', 'children': ['102']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'parts'}, {'id': '103', 'type': 'if_statement', 'children': ['104', '110']}; {'id': '104', 'type': 'comparison_operator', 'children': ['105', '109'], 'value': '>'}, {'id': '105', 'type': 'call', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '107', 'type': 'argument_list', 'children': ['108']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'parts'}, {'id': '109', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '110', 'type': 'block', 'children': ['111', '142']}, {'id': '111', 'type': 'if_statement', 'children': ['112', '118']}; {'id': '112', 'type': 'comparison_operator', 'children': ['113', '117'], 'value': 'in'}, {'id': '113', 'type': 'subscript', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'parts'}, {'id': '115', 'type': 'unary_operator', 'children': ['116'], 'value': '-'}; {'id': '116', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'particles'}; {'id': '118', 'type': 'block', 'children': ['119']}, {'id': '119', 'type': 'expression_statement', 'children': ['120']}; {'id': '120', 'type': 'assignment', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'parts'}; {'id': '122', 'type': 'binary_operator', 'children': ['123', '130'], 'value': '+'}, {'id': '123', 'type': 'subscript', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'parts'}, {'id': '125', 'type': 'slice', 'children': ['126', '127', '128']}; {'id': '126', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '127', 'type': 'colon', 'children': []}; {'id': '128', 'type': 'unary_operator', 'children': ['129'], 'value': '-'}, {'id': '129', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '130', 'type': 'list', 'children': ['131'], 'value': "[ ' '.join(parts[-2:]) ]"}, {'id': '131', 'type': 'call', 'children': ['132', '135']}; {'id': '132', 'type': 'attribute', 'children': ['133', '134']}, {'id': '133', 'type': 'string', 'children': [], 'value': "' '"}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '135', 'type': 'argument_list', 'children': ['136']}; {'id': '136', 'type': 'subscript', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'parts'}; {'id': '138', 'type': 'slice', 'children': ['139', '141']}, {'id': '139', 'type': 'unary_operator', 'children': ['140'], 'value': '-'}; {'id': '140', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '141', 'type': 'colon', 'children': []}; {'id': '142', 'type': 'expression_statement', 'children': ['143']}, {'id': '143', 'type': 'assignment', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'sort_string'}, {'id': '145', 'type': 'call', 'children': ['146', '149']}; {'id': '146', 'type': 'attribute', 'children': ['147', '148']}, {'id': '147', 'type': 'string', 'children': [], 'value': "'{}, {}'"}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '149', 'type': 'argument_list', 'children': ['150', '154']}; {'id': '150', 'type': 'subscript', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'parts'}; {'id': '152', 'type': 'unary_operator', 'children': ['153'], 'value': '-'}, {'id': '153', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '154', 'type': 'call', 'children': ['155', '158']}, {'id': '155', 'type': 'attribute', 'children': ['156', '157']}; {'id': '156', 'type': 'string', 'children': [], 'value': "' '"}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '158', 'type': 'argument_list', 'children': ['159']}, {'id': '159', 'type': 'subscript', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'parts'}, {'id': '161', 'type': 'slice', 'children': ['162', '163']}; {'id': '162', 'type': 'colon', 'children': []}, {'id': '163', 'type': 'unary_operator', 'children': ['164'], 'value': '-'}; {'id': '164', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '165', 'type': 'if_statement', 'children': ['166', '167']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'suffix'}, {'id': '167', 'type': 'block', 'children': ['168']}; {'id': '168', 'type': 'expression_statement', 'children': ['169']}, {'id': '169', 'type': 'assignment', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'sort_string'}, {'id': '171', 'type': 'call', 'children': ['172', '175']}; {'id': '172', 'type': 'attribute', 'children': ['173', '174']}, {'id': '173', 'type': 'string', 'children': [], 'value': "'{} {}'"}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '175', 'type': 'argument_list', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'sort_string'}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'suffix'}; {'id': '178', 'type': 'expression_statement', 'children': ['179']}, {'id': '179', 'type': 'assignment', 'children': ['180', '181']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'sort_string'}, {'id': '181', 'type': 'call', 'children': ['182', '185']}; {'id': '182', 'type': 'attribute', 'children': ['183', '184']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '184', 'type': 'identifier', 'children': [], 'value': '_naturalize_numbers'}, {'id': '185', 'type': 'argument_list', 'children': ['186']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'sort_string'}, {'id': '187', 'type': 'return_statement', 'children': ['188']} | def naturalize_person(self, string):
suffixes = [
'Jr', 'Jr.', 'Sr', 'Sr.',
'I', 'II', 'III', 'IV', 'V',
]
suffixes = suffixes + [s.lower() for s in suffixes]
particles = [
'Le', 'La',
'Von', 'Van',
'Du', 'De',
]
surname = ''
names = ''
suffix = ''
sort_string = string
parts = string.split(' ')
if parts[-1] in suffixes:
suffix = parts[-1]
parts = parts[0:-1]
sort_string = ' '.join(parts)
if len(parts) > 1:
if parts[-2] in particles:
parts = parts[0:-2] + [ ' '.join(parts[-2:]) ]
sort_string = '{}, {}'.format(parts[-1], ' '.join(parts[:-1]))
if suffix:
sort_string = '{} {}'.format(sort_string, suffix)
sort_string = self._naturalize_numbers(sort_string)
return sort_string |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_countries'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '36', '40', '66']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'qs'}, {'id': '9', 'type': 'call', 'children': ['10', '34']}; {'id': '10', 'type': 'attribute', 'children': ['11', '32', '33']}, {'id': '11', 'type': 'call', 'children': ['12', '31']}; {'id': '12', 'type': 'attribute', 'children': ['13', '29', '30']}, {'id': '13', 'type': 'call', 'children': ['14', '25']}; {'id': '14', 'type': 'attribute', 'children': ['15', '23', '24']}, {'id': '15', 'type': 'call', 'children': ['16', '21']}; {'id': '16', 'type': 'attribute', 'children': ['17', '20']}, {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'Venue'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'objects'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'values'}, {'id': '21', 'type': 'argument_list', 'children': ['22']}; {'id': '22', 'type': 'string', 'children': [], 'value': "'country'"}, {'id': '23', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'exclude'}, {'id': '25', 'type': 'argument_list', 'children': ['26']}; {'id': '26', 'type': 'keyword_argument', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'country'}; {'id': '28', 'type': 'string', 'children': [], 'value': "''"}, {'id': '29', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'distinct'}, {'id': '31', 'type': 'argument_list', 'children': []}; {'id': '32', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'order_by'}; {'id': '34', 'type': 'argument_list', 'children': ['35']}, {'id': '35', 'type': 'string', 'children': [], 'value': "'country'"}; {'id': '36', 'type': 'expression_statement', 'children': ['37']}, {'id': '37', 'type': 'assignment', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'countries'}, {'id': '39', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '40', 'type': 'for_statement', 'children': ['41', '42', '43']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'c'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'qs'}, {'id': '43', 'type': 'block', 'children': ['44']}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}, {'id': '45', 'type': 'call', 'children': ['46', '49']}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'countries'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '49', 'type': 'argument_list', 'children': ['50']}; {'id': '50', 'type': 'dictionary', 'children': ['51', '56']}, {'id': '51', 'type': 'pair', 'children': ['52', '53']}; {'id': '52', 'type': 'string', 'children': [], 'value': "'code'"}, {'id': '53', 'type': 'subscript', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'c'}, {'id': '55', 'type': 'string', 'children': [], 'value': "'country'"}; {'id': '56', 'type': 'pair', 'children': ['57', '58']}, {'id': '57', 'type': 'string', 'children': [], 'value': "'name'"}; {'id': '58', 'type': 'call', 'children': ['59', '62']}, {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'Venue'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'get_country_name'}; {'id': '62', 'type': 'argument_list', 'children': ['63']}, {'id': '63', 'type': 'subscript', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'c'}, {'id': '65', 'type': 'string', 'children': [], 'value': "'country'"}; {'id': '66', 'type': 'return_statement', 'children': ['67']}, {'id': '67', 'type': 'call', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '69', 'type': 'argument_list', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'countries'}, {'id': '71', 'type': 'keyword_argument', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '73', 'type': 'lambda', 'children': ['74', '76']}; {'id': '74', 'type': 'lambda_parameters', 'children': ['75']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'k'}; {'id': '76', 'type': 'subscript', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'k'} | def get_countries(self):
qs = Venue.objects.values('country') \
.exclude(country='') \
.distinct() \
.order_by('country')
countries = []
for c in qs:
countries.append({
'code': c['country'],
'name': Venue.get_country_name(c['country'])
})
return sorted(countries, key=lambda k: k['name']) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '13']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'fit'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '10']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 't'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'dy'}, {'id': '9', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '10', 'type': 'default_parameter', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'presorted'}; {'id': '12', 'type': 'False', 'children': []}, {'id': '13', 'type': 'block', 'children': ['14', '35', '50']}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}, {'id': '15', 'type': 'assignment', 'children': ['16', '26']}; {'id': '16', 'type': 'pattern_list', 'children': ['17', '20', '23']}, {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 't'}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'dy'}; {'id': '26', 'type': 'call', 'children': ['27', '30']}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': '_validate_inputs'}; {'id': '30', 'type': 'argument_list', 'children': ['31', '32', '33', '34']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 't'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'dy'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'presorted'}, {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'call', 'children': ['37', '40']}, {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': '_fit'}; {'id': '40', 'type': 'argument_list', 'children': ['41', '44', '47']}, {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 't'}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'dy'}; {'id': '50', 'type': 'return_statement', 'children': ['51']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'self'} | def fit(self, t, y, dy=1, presorted=False):
self.t, self.y, self.dy = self._validate_inputs(t, y, dy, presorted)
self._fit(self.t, self.y, self.dy)
return self |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'validate_inputs'}, {'id': '3', 'type': 'parameters', 'children': ['4', '6']}; {'id': '4', 'type': 'list_splat_pattern', 'children': ['5']}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'arrays'}; {'id': '6', 'type': 'dictionary_splat_pattern', 'children': ['7']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '8', 'type': 'block', 'children': ['9', '19', '29', '46', '60', '103']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'arrays'}; {'id': '12', 'type': 'call', 'children': ['13', '16']}, {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'broadcast_arrays'}; {'id': '16', 'type': 'argument_list', 'children': ['17']}, {'id': '17', 'type': 'list_splat', 'children': ['18']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'arrays'}, {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'sort_by'}; {'id': '22', 'type': 'call', 'children': ['23', '26']}, {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'pop'}; {'id': '26', 'type': 'argument_list', 'children': ['27', '28']}, {'id': '27', 'type': 'string', 'children': [], 'value': "'sort_by'"}; {'id': '28', 'type': 'None', 'children': []}, {'id': '29', 'type': 'if_statement', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '31', 'type': 'block', 'children': ['32']}; {'id': '32', 'type': 'raise_statement', 'children': ['33']}, {'id': '33', 'type': 'call', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '35', 'type': 'argument_list', 'children': ['36']}; {'id': '36', 'type': 'call', 'children': ['37', '40']}, {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'string', 'children': [], 'value': '"unrecognized arguments: {0}"'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '40', 'type': 'argument_list', 'children': ['41']}, {'id': '41', 'type': 'call', 'children': ['42', '45']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'keys'}, {'id': '45', 'type': 'argument_list', 'children': []}; {'id': '46', 'type': 'if_statement', 'children': ['47', '54']}, {'id': '47', 'type': 'comparison_operator', 'children': ['48', '53'], 'value': '!='}; {'id': '48', 'type': 'attribute', 'children': ['49', '52']}, {'id': '49', 'type': 'subscript', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'arrays'}, {'id': '51', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'ndim'}, {'id': '53', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '54', 'type': 'block', 'children': ['55']}, {'id': '55', 'type': 'raise_statement', 'children': ['56']}; {'id': '56', 'type': 'call', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '58', 'type': 'argument_list', 'children': ['59']}, {'id': '59', 'type': 'string', 'children': [], 'value': '"Input arrays should be one-dimensional."'}; {'id': '60', 'type': 'if_statement', 'children': ['61', '64']}, {'id': '61', 'type': 'comparison_operator', 'children': ['62', '63'], 'value': 'is'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'sort_by'}, {'id': '63', 'type': 'None', 'children': []}; {'id': '64', 'type': 'block', 'children': ['65', '74', '90']}, {'id': '65', 'type': 'expression_statement', 'children': ['66']}; {'id': '66', 'type': 'assignment', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'isort'}; {'id': '68', 'type': 'call', 'children': ['69', '72']}, {'id': '69', 'type': 'attribute', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'argsort'}; {'id': '72', 'type': 'argument_list', 'children': ['73']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'sort_by'}; {'id': '74', 'type': 'if_statement', 'children': ['75', '84']}, {'id': '75', 'type': 'comparison_operator', 'children': ['76', '79'], 'value': '!='}; {'id': '76', 'type': 'attribute', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'isort'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'shape'}, {'id': '79', 'type': 'attribute', 'children': ['80', '83']}; {'id': '80', 'type': 'subscript', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'arrays'}; {'id': '82', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'shape'}; {'id': '84', 'type': 'block', 'children': ['85']}, {'id': '85', 'type': 'raise_statement', 'children': ['86']}; {'id': '86', 'type': 'call', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '88', 'type': 'argument_list', 'children': ['89']}, {'id': '89', 'type': 'string', 'children': [], 'value': '"sort shape must equal array shape."'}; {'id': '90', 'type': 'expression_statement', 'children': ['91']}, {'id': '91', 'type': 'assignment', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'arrays'}, {'id': '93', 'type': 'call', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'tuple'}, {'id': '95', 'type': 'argument_list', 'children': ['96']}; {'id': '96', 'type': 'list_comprehension', 'children': ['97', '100']}, {'id': '97', 'type': 'subscript', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'a'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'isort'}; {'id': '100', 'type': 'for_in_clause', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'a'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'arrays'}, {'id': '103', 'type': 'return_statement', 'children': ['104']} | def validate_inputs(*arrays, **kwargs):
arrays = np.broadcast_arrays(*arrays)
sort_by = kwargs.pop('sort_by', None)
if kwargs:
raise ValueError("unrecognized arguments: {0}".format(kwargs.keys()))
if arrays[0].ndim != 1:
raise ValueError("Input arrays should be one-dimensional.")
if sort_by is not None:
isort = np.argsort(sort_by)
if isort.shape != arrays[0].shape:
raise ValueError("sort shape must equal array shape.")
arrays = tuple([a[isort] for a in arrays])
return arrays |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'multinterp'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'xquery'}, {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'slow'}, {'id': '9', 'type': 'False', 'children': []}; {'id': '10', 'type': 'block', 'children': ['11', '27', '33', '39', '51', '70']}, {'id': '11', 'type': 'expression_statement', 'children': ['12']}; {'id': '12', 'type': 'assignment', 'children': ['13', '17']}, {'id': '13', 'type': 'pattern_list', 'children': ['14', '15', '16']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'xquery'}, {'id': '17', 'type': 'call', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'map'}, {'id': '19', 'type': 'argument_list', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'asarray'}, {'id': '23', 'type': 'tuple', 'children': ['24', '25', '26']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'xquery'}, {'id': '27', 'type': 'assert_statement', 'children': ['28']}; {'id': '28', 'type': 'comparison_operator', 'children': ['29', '32'], 'value': '=='}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'ndim'}; {'id': '32', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '33', 'type': 'assert_statement', 'children': ['34']}; {'id': '34', 'type': 'comparison_operator', 'children': ['35', '38'], 'value': '=='}, {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'xquery'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'ndim'}; {'id': '38', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '39', 'type': 'assert_statement', 'children': ['40']}; {'id': '40', 'type': 'comparison_operator', 'children': ['41', '44'], 'value': '=='}, {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'shape'}; {'id': '44', 'type': 'binary_operator', 'children': ['45', '48'], 'value': '+'}, {'id': '45', 'type': 'attribute', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'shape'}; {'id': '48', 'type': 'attribute', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'xquery'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'shape'}, {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'assignment', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'xquery'}; {'id': '54', 'type': 'call', 'children': ['55', '58']}, {'id': '55', 'type': 'attribute', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'clip'}; {'id': '58', 'type': 'argument_list', 'children': ['59', '60', '65']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'xquery'}; {'id': '60', 'type': 'call', 'children': ['61', '64']}, {'id': '61', 'type': 'attribute', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'min'}; {'id': '64', 'type': 'argument_list', 'children': []}, {'id': '65', 'type': 'call', 'children': ['66', '69']}; {'id': '66', 'type': 'attribute', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'max'}, {'id': '69', 'type': 'argument_list', 'children': []}; {'id': '70', 'type': 'if_statement', 'children': ['71', '72', '105', '188']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'slow'}; {'id': '72', 'type': 'block', 'children': ['73', '79']}, {'id': '73', 'type': 'import_from_statement', 'children': ['74', '77']}; {'id': '74', 'type': 'dotted_name', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'scipy'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'interpolate'}, {'id': '77', 'type': 'dotted_name', 'children': ['78']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'interp1d'}, {'id': '79', 'type': 'return_statement', 'children': ['80']}; {'id': '80', 'type': 'call', 'children': ['81', '84']}, {'id': '81', 'type': 'attribute', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'array'}; {'id': '84', 'type': 'argument_list', 'children': ['85']}, {'id': '85', 'type': 'list_comprehension', 'children': ['86', '94']}; {'id': '86', 'type': 'call', 'children': ['87', '92']}, {'id': '87', 'type': 'call', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'interp1d'}, {'id': '89', 'type': 'argument_list', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '92', 'type': 'argument_list', 'children': ['93']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'xq'}; {'id': '94', 'type': 'for_in_clause', 'children': ['95', '98']}, {'id': '95', 'type': 'pattern_list', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'xq'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '98', 'type': 'call', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'zip'}; {'id': '100', 'type': 'argument_list', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'xquery'}; {'id': '102', 'type': 'attribute', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'T'}, {'id': '105', 'type': 'elif_clause', 'children': ['106', '112']}; {'id': '106', 'type': 'comparison_operator', 'children': ['107', '111'], 'value': '=='}, {'id': '107', 'type': 'call', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '109', 'type': 'argument_list', 'children': ['110']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '111', 'type': 'integer', 'children': [], 'value': '3'}; {'id': '112', 'type': 'block', 'children': ['113', '144', '175']}, {'id': '113', 'type': 'expression_statement', 'children': ['114']}; {'id': '114', 'type': 'assignment', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'yq_lower'}; {'id': '116', 'type': 'binary_operator', 'children': ['117', '120'], 'value': '+'}, {'id': '117', 'type': 'subscript', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '119', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '120', 'type': 'binary_operator', 'children': ['121', '136'], 'value': '/'}, {'id': '121', 'type': 'binary_operator', 'children': ['122', '128'], 'value': '*'}; {'id': '122', 'type': 'parenthesized_expression', 'children': ['123']}, {'id': '123', 'type': 'binary_operator', 'children': ['124', '125'], 'value': '-'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'xquery'}, {'id': '125', 'type': 'subscript', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '127', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '128', 'type': 'parenthesized_expression', 'children': ['129']}, {'id': '129', 'type': 'binary_operator', 'children': ['130', '133'], 'value': '-'}; {'id': '130', 'type': 'subscript', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '132', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '133', 'type': 'subscript', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '135', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '136', 'type': 'parenthesized_expression', 'children': ['137']}, {'id': '137', 'type': 'binary_operator', 'children': ['138', '141'], 'value': '-'}; {'id': '138', 'type': 'subscript', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '140', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '141', 'type': 'subscript', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '143', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '144', 'type': 'expression_statement', 'children': ['145']}, {'id': '145', 'type': 'assignment', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'yq_upper'}, {'id': '147', 'type': 'binary_operator', 'children': ['148', '151'], 'value': '+'}; {'id': '148', 'type': 'subscript', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '150', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '151', 'type': 'binary_operator', 'children': ['152', '167'], 'value': '/'}; {'id': '152', 'type': 'binary_operator', 'children': ['153', '159'], 'value': '*'}, {'id': '153', 'type': 'parenthesized_expression', 'children': ['154']}; {'id': '154', 'type': 'binary_operator', 'children': ['155', '156'], 'value': '-'}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'xquery'}; {'id': '156', 'type': 'subscript', 'children': ['157', '158']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '158', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '159', 'type': 'parenthesized_expression', 'children': ['160']}; {'id': '160', 'type': 'binary_operator', 'children': ['161', '164'], 'value': '-'}, {'id': '161', 'type': 'subscript', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '163', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '164', 'type': 'subscript', 'children': ['165', '166']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '166', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '167', 'type': 'parenthesized_expression', 'children': ['168']}; {'id': '168', 'type': 'binary_operator', 'children': ['169', '172'], 'value': '-'}, {'id': '169', 'type': 'subscript', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '171', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '172', 'type': 'subscript', 'children': ['173', '174']}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '174', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '175', 'type': 'return_statement', 'children': ['176']}; {'id': '176', 'type': 'call', 'children': ['177', '180']}, {'id': '177', 'type': 'attribute', 'children': ['178', '179']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'where'}; {'id': '180', 'type': 'argument_list', 'children': ['181', '186', '187']}, {'id': '181', 'type': 'comparison_operator', 'children': ['182', '183'], 'value': '<'}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'xquery'}, {'id': '183', 'type': 'subscript', 'children': ['184', '185']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '185', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'yq_lower'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'yq_upper'}; {'id': '188', 'type': 'else_clause', 'children': ['189']}, {'id': '189', 'type': 'block', 'children': ['190', '217', '229']}; {'id': '190', 'type': 'expression_statement', 'children': ['191']}, {'id': '191', 'type': 'assignment', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '193', 'type': 'call', 'children': ['194', '197']}; {'id': '194', 'type': 'attribute', 'children': ['195', '196']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'clip'}, {'id': '197', 'type': 'argument_list', 'children': ['198', '210', '211']}; {'id': '198', 'type': 'binary_operator', 'children': ['199', '209'], 'value': '-'}, {'id': '199', 'type': 'call', 'children': ['200', '203']}; {'id': '200', 'type': 'attribute', 'children': ['201', '202']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'searchsorted'}, {'id': '203', 'type': 'argument_list', 'children': ['204', '205', '206']}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'xquery'}; {'id': '206', 'type': 'keyword_argument', 'children': ['207', '208']}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'side'}; {'id': '208', 'type': 'string', 'children': [], 'value': "'right'"}, {'id': '209', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '210', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '211', 'type': 'binary_operator', 'children': ['212', '216'], 'value': '-'}; {'id': '212', 'type': 'call', 'children': ['213', '214']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '214', 'type': 'argument_list', 'children': ['215']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '216', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '217', 'type': 'expression_statement', 'children': ['218']}; {'id': '218', 'type': 'assignment', 'children': ['219', '220']}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '220', 'type': 'call', 'children': ['221', '224']}, {'id': '221', 'type': 'attribute', 'children': ['222', '223']}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'arange'}; {'id': '224', 'type': 'argument_list', 'children': ['225']}, {'id': '225', 'type': 'call', 'children': ['226', '227']}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '227', 'type': 'argument_list', 'children': ['228']}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'xquery'}, {'id': '229', 'type': 'return_statement', 'children': ['230']}; {'id': '230', 'type': 'binary_operator', 'children': ['231', '235'], 'value': '+'}, {'id': '231', 'type': 'subscript', 'children': ['232', '233', '234']}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'j'}, {'id': '235', 'type': 'parenthesized_expression', 'children': ['236']}; {'id': '236', 'type': 'binary_operator', 'children': ['237', '256'], 'value': '/'}, {'id': '237', 'type': 'binary_operator', 'children': ['238', '244'], 'value': '*'}; {'id': '238', 'type': 'parenthesized_expression', 'children': ['239']}, {'id': '239', 'type': 'binary_operator', 'children': ['240', '241'], 'value': '-'}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'xquery'}, {'id': '241', 'type': 'subscript', 'children': ['242', '243']}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '244', 'type': 'parenthesized_expression', 'children': ['245']}, {'id': '245', 'type': 'binary_operator', 'children': ['246', '252'], 'value': '-'}; {'id': '246', 'type': 'subscript', 'children': ['247', '248', '251']}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '248', 'type': 'binary_operator', 'children': ['249', '250'], 'value': '+'}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '250', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '252', 'type': 'subscript', 'children': ['253', '254', '255']}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'y'}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '255', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '256', 'type': 'parenthesized_expression', 'children': ['257']}, {'id': '257', 'type': 'binary_operator', 'children': ['258', '263'], 'value': '-'}; {'id': '258', 'type': 'subscript', 'children': ['259', '260']}, {'id': '259', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '260', 'type': 'binary_operator', 'children': ['261', '262'], 'value': '+'}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '262', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '263', 'type': 'subscript', 'children': ['264', '265']}; {'id': '264', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'i'} | def multinterp(x, y, xquery, slow=False):
x, y, xquery = map(np.asarray, (x, y, xquery))
assert x.ndim == 1
assert xquery.ndim == 1
assert y.shape == x.shape + xquery.shape
xquery = np.clip(xquery, x.min(), x.max())
if slow:
from scipy.interpolate import interp1d
return np.array([interp1d(x, y)(xq) for xq, y in zip(xquery, y.T)])
elif len(x) == 3:
yq_lower = y[0] + (xquery - x[0]) * (y[1] - y[0]) / (x[1] - x[0])
yq_upper = y[1] + (xquery - x[1]) * (y[2] - y[1]) / (x[2] - x[1])
return np.where(xquery < x[1], yq_lower, yq_upper)
else:
i = np.clip(np.searchsorted(x, xquery, side='right') - 1,
0, len(x) - 2)
j = np.arange(len(xquery))
return y[i, j] + ((xquery - x[i]) *
(y[i + 1, j] - y[i, j]) / (x[i + 1] - x[i])) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'check_valid_time_and_sort'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'df'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'timescol'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'days'}; {'id': '8', 'type': 'integer', 'children': [], 'value': '5'}, {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'warning'}, {'id': '11', 'type': 'True', 'children': []}; {'id': '12', 'type': 'block', 'children': ['13', '34']}, {'id': '13', 'type': 'expression_statement', 'children': ['14']}; {'id': '14', 'type': 'assignment', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'timediff'}; {'id': '16', 'type': 'attribute', 'children': ['17', '33']}, {'id': '17', 'type': 'parenthesized_expression', 'children': ['18']}; {'id': '18', 'type': 'binary_operator', 'children': ['19', '26'], 'value': '-'}, {'id': '19', 'type': 'call', 'children': ['20', '25']}; {'id': '20', 'type': 'attribute', 'children': ['21', '24']}, {'id': '21', 'type': 'subscript', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'df'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'timescol'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'max'}, {'id': '25', 'type': 'argument_list', 'children': []}; {'id': '26', 'type': 'call', 'children': ['27', '32']}, {'id': '27', 'type': 'attribute', 'children': ['28', '31']}; {'id': '28', 'type': 'subscript', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'df'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'timescol'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'min'}; {'id': '32', 'type': 'argument_list', 'children': []}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'days'}; {'id': '34', 'type': 'if_statement', 'children': ['35', '38', '57']}, {'id': '35', 'type': 'comparison_operator', 'children': ['36', '37'], 'value': '<'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'timediff'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'days'}; {'id': '38', 'type': 'block', 'children': ['39']}, {'id': '39', 'type': 'return_statement', 'children': ['40']}; {'id': '40', 'type': 'call', 'children': ['41', '56']}, {'id': '41', 'type': 'attribute', 'children': ['42', '55']}; {'id': '42', 'type': 'call', 'children': ['43', '51']}, {'id': '43', 'type': 'attribute', 'children': ['44', '50']}; {'id': '44', 'type': 'call', 'children': ['45', '48']}, {'id': '45', 'type': 'attribute', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'df'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'sort_values'}; {'id': '48', 'type': 'argument_list', 'children': ['49']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'timescol'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'reset_index'}, {'id': '51', 'type': 'argument_list', 'children': ['52']}; {'id': '52', 'type': 'keyword_argument', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'drop'}; {'id': '54', 'type': 'True', 'children': []}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'reset_index'}; {'id': '56', 'type': 'argument_list', 'children': []}, {'id': '57', 'type': 'else_clause', 'children': ['58']}; {'id': '58', 'type': 'block', 'children': ['59', '124']}, {'id': '59', 'type': 'if_statement', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'warning'}, {'id': '61', 'type': 'block', 'children': ['62', '79', '88', '105']}; {'id': '62', 'type': 'expression_statement', 'children': ['63']}, {'id': '63', 'type': 'call', 'children': ['64', '69']}; {'id': '64', 'type': 'attribute', 'children': ['65', '68']}, {'id': '65', 'type': 'attribute', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'sys'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'stderr'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'write'}, {'id': '69', 'type': 'argument_list', 'children': ['70']}; {'id': '70', 'type': 'call', 'children': ['71', '74']}, {'id': '71', 'type': 'attribute', 'children': ['72', '73']}; {'id': '72', 'type': 'string', 'children': [], 'value': '"\\nWarning: data generated is from more than {} days.\\n"'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '74', 'type': 'argument_list', 'children': ['75']}, {'id': '75', 'type': 'call', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '77', 'type': 'argument_list', 'children': ['78']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'days'}, {'id': '79', 'type': 'expression_statement', 'children': ['80']}; {'id': '80', 'type': 'call', 'children': ['81', '86']}, {'id': '81', 'type': 'attribute', 'children': ['82', '85']}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'stderr'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '86', 'type': 'argument_list', 'children': ['87']}, {'id': '87', 'type': 'string', 'children': [], 'value': '"Likely this indicates you are combining multiple runs.\\n"'}; {'id': '88', 'type': 'expression_statement', 'children': ['89']}, {'id': '89', 'type': 'call', 'children': ['90', '95']}; {'id': '90', 'type': 'attribute', 'children': ['91', '94']}, {'id': '91', 'type': 'attribute', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'sys'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'stderr'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'write'}, {'id': '95', 'type': 'argument_list', 'children': ['96']}; {'id': '96', 'type': 'call', 'children': ['97', '100']}, {'id': '97', 'type': 'attribute', 'children': ['98', '99']}; {'id': '98', 'type': 'string', 'children': [], 'value': '"Plots based on time are invalid and therefore truncated to first {} days.\\n\\n"'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '100', 'type': 'argument_list', 'children': ['101']}, {'id': '101', 'type': 'call', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '103', 'type': 'argument_list', 'children': ['104']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'days'}, {'id': '105', 'type': 'expression_statement', 'children': ['106']}; {'id': '106', 'type': 'call', 'children': ['107', '110']}, {'id': '107', 'type': 'attribute', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'logging'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'warning'}; {'id': '110', 'type': 'argument_list', 'children': ['111']}, {'id': '111', 'type': 'call', 'children': ['112', '115']}; {'id': '112', 'type': 'attribute', 'children': ['113', '114']}, {'id': '113', 'type': 'string', 'children': [], 'value': '"Time plots truncated to first {} days: invalid timespan: {} days"'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '115', 'type': 'argument_list', 'children': ['116', '120']}; {'id': '116', 'type': 'call', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '118', 'type': 'argument_list', 'children': ['119']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'days'}; {'id': '120', 'type': 'call', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '122', 'type': 'argument_list', 'children': ['123']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'timediff'}; {'id': '124', 'type': 'return_statement', 'children': ['125']}, {'id': '125', 'type': 'call', 'children': ['126', '155']}; {'id': '126', 'type': 'attribute', 'children': ['127', '153', '154']}, {'id': '127', 'type': 'call', 'children': ['128', '149']}; {'id': '128', 'type': 'attribute', 'children': ['129', '147', '148']}, {'id': '129', 'type': 'call', 'children': ['130', '145']}; {'id': '130', 'type': 'attribute', 'children': ['131', '143', '144']}, {'id': '131', 'type': 'subscript', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'df'}, {'id': '133', 'type': 'comparison_operator', 'children': ['134', '137'], 'value': '<'}; {'id': '134', 'type': 'subscript', 'children': ['135', '136']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'df'}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'timescol'}, {'id': '137', 'type': 'call', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'timedelta'}, {'id': '139', 'type': 'argument_list', 'children': ['140']}; {'id': '140', 'type': 'keyword_argument', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'days'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'days'}, {'id': '143', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'sort_values'}, {'id': '145', 'type': 'argument_list', 'children': ['146']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'timescol'}, {'id': '147', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'reset_index'}, {'id': '149', 'type': 'argument_list', 'children': ['150']}; {'id': '150', 'type': 'keyword_argument', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'drop'}; {'id': '152', 'type': 'True', 'children': []}, {'id': '153', 'type': 'line_continuation', 'children': [], 'value': '\\'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'reset_index'}, {'id': '155', 'type': 'argument_list', 'children': []} | def check_valid_time_and_sort(df, timescol, days=5, warning=True):
timediff = (df[timescol].max() - df[timescol].min()).days
if timediff < days:
return df.sort_values(timescol).reset_index(drop=True).reset_index()
else:
if warning:
sys.stderr.write(
"\nWarning: data generated is from more than {} days.\n".format(str(days)))
sys.stderr.write("Likely this indicates you are combining multiple runs.\n")
sys.stderr.write(
"Plots based on time are invalid and therefore truncated to first {} days.\n\n"
.format(str(days)))
logging.warning("Time plots truncated to first {} days: invalid timespan: {} days"
.format(str(days), str(timediff)))
return df[df[timescol] < timedelta(days=days)] \
.sort_values(timescol) \
.reset_index(drop=True) \
.reset_index() |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '18']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'list_anime_series'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '10', '15']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '7', 'type': 'attribute', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'META'}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'SORT_ALPHA'}; {'id': '10', 'type': 'default_parameter', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'limit'}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'META'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'MAX_SERIES'}, {'id': '15', 'type': 'default_parameter', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'offset'}, {'id': '17', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '18', 'type': 'block', 'children': ['19', '43']}, {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '22', 'type': 'call', 'children': ['23', '28']}, {'id': '23', 'type': 'attribute', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': '_android_api'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'list_series'}; {'id': '28', 'type': 'argument_list', 'children': ['29', '34', '37', '40']}, {'id': '29', 'type': 'keyword_argument', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'media_type'}, {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'ANDROID'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'MEDIA_TYPE_ANIME'}; {'id': '34', 'type': 'keyword_argument', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'filter'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '37', 'type': 'keyword_argument', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'limit'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'limit'}; {'id': '40', 'type': 'keyword_argument', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'offset'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'offset'}, {'id': '43', 'type': 'return_statement', 'children': ['44']} | def list_anime_series(self, sort=META.SORT_ALPHA, limit=META.MAX_SERIES, offset=0):
result = self._android_api.list_series(
media_type=ANDROID.MEDIA_TYPE_ANIME,
filter=sort,
limit=limit,
offset=offset)
return result |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '18']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'list_drama_series'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '10', '15']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '7', 'type': 'attribute', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'META'}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'SORT_ALPHA'}; {'id': '10', 'type': 'default_parameter', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'limit'}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'META'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'MAX_SERIES'}, {'id': '15', 'type': 'default_parameter', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'offset'}, {'id': '17', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '18', 'type': 'block', 'children': ['19', '43']}, {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '22', 'type': 'call', 'children': ['23', '28']}, {'id': '23', 'type': 'attribute', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': '_android_api'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'list_series'}; {'id': '28', 'type': 'argument_list', 'children': ['29', '34', '37', '40']}, {'id': '29', 'type': 'keyword_argument', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'media_type'}, {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'ANDROID'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'MEDIA_TYPE_DRAMA'}; {'id': '34', 'type': 'keyword_argument', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'filter'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '37', 'type': 'keyword_argument', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'limit'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'limit'}; {'id': '40', 'type': 'keyword_argument', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'offset'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'offset'}, {'id': '43', 'type': 'return_statement', 'children': ['44']} | def list_drama_series(self, sort=META.SORT_ALPHA, limit=META.MAX_SERIES, offset=0):
result = self._android_api.list_series(
media_type=ANDROID.MEDIA_TYPE_DRAMA,
filter=sort,
limit=limit,
offset=offset)
return result |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '19']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'list_media'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '11', '16']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'series'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'META'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'SORT_DESC'}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'limit'}, {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'META'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'MAX_MEDIA'}; {'id': '16', 'type': 'default_parameter', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'offset'}; {'id': '18', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '19', 'type': 'block', 'children': ['20', '33', '45', '57']}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '23', 'type': 'dictionary', 'children': ['24', '27', '30']}; {'id': '24', 'type': 'pair', 'children': ['25', '26']}, {'id': '25', 'type': 'string', 'children': [], 'value': "'sort'"}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '27', 'type': 'pair', 'children': ['28', '29']}; {'id': '28', 'type': 'string', 'children': [], 'value': "'offset'"}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'offset'}; {'id': '30', 'type': 'pair', 'children': ['31', '32']}, {'id': '31', 'type': 'string', 'children': [], 'value': "'limit'"}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'limit'}, {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'call', 'children': ['35', '38']}, {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'update'}; {'id': '38', 'type': 'argument_list', 'children': ['39']}, {'id': '39', 'type': 'call', 'children': ['40', '43']}; {'id': '40', 'type': 'attribute', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': '_get_series_query_dict'}, {'id': '43', 'type': 'argument_list', 'children': ['44']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'series'}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'assignment', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '48', 'type': 'call', 'children': ['49', '54']}, {'id': '49', 'type': 'attribute', 'children': ['50', '53']}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': '_android_api'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'list_media'}; {'id': '54', 'type': 'argument_list', 'children': ['55']}, {'id': '55', 'type': 'dictionary_splat', 'children': ['56']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '57', 'type': 'return_statement', 'children': ['58']} | def list_media(self, series, sort=META.SORT_DESC, limit=META.MAX_MEDIA, offset=0):
params = {
'sort': sort,
'offset': offset,
'limit': limit,
}
params.update(self._get_series_query_dict(series))
result = self._android_api.list_media(**params)
return result |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'solve_sort'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'vars'}; {'id': '6', 'type': 'block', 'children': ['7', '24', '30', '50', '62']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'lhs_values'}; {'id': '10', 'type': 'call', 'children': ['11', '14']}, {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'repeated'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'getvalues'}; {'id': '14', 'type': 'argument_list', 'children': ['15']}, {'id': '15', 'type': 'subscript', 'children': ['16', '23']}; {'id': '16', 'type': 'call', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': '__solve_for_repeated'}; {'id': '18', 'type': 'argument_list', 'children': ['19', '22']}, {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'lhs'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'vars'}, {'id': '23', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}, {'id': '25', 'type': 'assignment', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'sort_expression'}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'rhs'}; {'id': '30', 'type': 'function_definition', 'children': ['31', '32', '34']}, {'id': '31', 'type': 'function_name', 'children': [], 'value': '_key_func'}; {'id': '32', 'type': 'parameters', 'children': ['33']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '34', 'type': 'block', 'children': ['35']}, {'id': '35', 'type': 'return_statement', 'children': ['36']}; {'id': '36', 'type': 'attribute', 'children': ['37', '49']}, {'id': '37', 'type': 'call', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'solve'}, {'id': '39', 'type': 'argument_list', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'sort_expression'}, {'id': '41', 'type': 'call', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': '__nest_scope'}, {'id': '43', 'type': 'argument_list', 'children': ['44', '47', '48']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'expr'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'lhs'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'vars'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '50', 'type': 'expression_statement', 'children': ['51']}, {'id': '51', 'type': 'assignment', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'results'}, {'id': '53', 'type': 'call', 'children': ['54', '57']}; {'id': '54', 'type': 'attribute', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'ordered'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'ordered'}, {'id': '57', 'type': 'argument_list', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'lhs_values'}, {'id': '59', 'type': 'keyword_argument', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'key_func'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': '_key_func'}; {'id': '62', 'type': 'return_statement', 'children': ['63']}, {'id': '63', 'type': 'call', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'Result'}, {'id': '65', 'type': 'argument_list', 'children': ['66', '73']}; {'id': '66', 'type': 'call', 'children': ['67', '70']}, {'id': '67', 'type': 'attribute', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'repeated'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'meld'}; {'id': '70', 'type': 'argument_list', 'children': ['71']}, {'id': '71', 'type': 'list_splat', 'children': ['72']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'results'}, {'id': '73', 'type': 'tuple', 'children': []} | def solve_sort(expr, vars):
lhs_values = repeated.getvalues(__solve_for_repeated(expr.lhs, vars)[0])
sort_expression = expr.rhs
def _key_func(x):
return solve(sort_expression, __nest_scope(expr.lhs, vars, x)).value
results = ordered.ordered(lhs_values, key_func=_key_func)
return Result(repeated.meld(*results), ()) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'expression'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'previous_precedence'}, {'id': '7', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '8', 'type': 'block', 'children': ['9', '17']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'lhs'}; {'id': '12', 'type': 'call', 'children': ['13', '16']}, {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'atom'}; {'id': '16', 'type': 'argument_list', 'children': []}, {'id': '17', 'type': 'return_statement', 'children': ['18']}; {'id': '18', 'type': 'call', 'children': ['19', '22']}, {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'operator'}; {'id': '22', 'type': 'argument_list', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'lhs'} | def expression(self, previous_precedence=0):
lhs = self.atom()
return self.operator(lhs, previous_precedence) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'application'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'func'}; {'id': '6', 'type': 'block', 'children': ['7', '17', '53', '62', '85', '96']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'start'}; {'id': '10', 'type': 'attribute', 'children': ['11', '16']}, {'id': '11', 'type': 'attribute', 'children': ['12', '15']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'tokens'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'matched'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'start'}, {'id': '17', 'type': 'if_statement', 'children': ['18', '28']}; {'id': '18', 'type': 'call', 'children': ['19', '24']}, {'id': '19', 'type': 'attribute', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'tokens'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'accept'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}, {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'common_grammar'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'rparen'}; {'id': '28', 'type': 'block', 'children': ['29']}, {'id': '29', 'type': 'return_statement', 'children': ['30']}; {'id': '30', 'type': 'call', 'children': ['31', '34']}, {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'ast'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'Apply'}; {'id': '34', 'type': 'argument_list', 'children': ['35', '36', '39', '48']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'func'}; {'id': '36', 'type': 'keyword_argument', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'start'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'start'}, {'id': '39', 'type': 'keyword_argument', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'end'}, {'id': '41', 'type': 'attribute', 'children': ['42', '47']}; {'id': '42', 'type': 'attribute', 'children': ['43', '46']}, {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'tokens'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'matched'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'end'}; {'id': '48', 'type': 'keyword_argument', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'source'}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'original'}, {'id': '53', 'type': 'expression_statement', 'children': ['54']}; {'id': '54', 'type': 'assignment', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'arguments'}; {'id': '56', 'type': 'list', 'children': ['57'], 'value': '[self.expression()]'}, {'id': '57', 'type': 'call', 'children': ['58', '61']}; {'id': '58', 'type': 'attribute', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'expression'}, {'id': '61', 'type': 'argument_list', 'children': []}; {'id': '62', 'type': 'while_statement', 'children': ['63', '73']}, {'id': '63', 'type': 'call', 'children': ['64', '69']}; {'id': '64', 'type': 'attribute', 'children': ['65', '68']}, {'id': '65', 'type': 'attribute', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'tokens'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'accept'}, {'id': '69', 'type': 'argument_list', 'children': ['70']}; {'id': '70', 'type': 'attribute', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'common_grammar'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'comma'}, {'id': '73', 'type': 'block', 'children': ['74']}; {'id': '74', 'type': 'expression_statement', 'children': ['75']}, {'id': '75', 'type': 'call', 'children': ['76', '79']}; {'id': '76', 'type': 'attribute', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'arguments'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '79', 'type': 'argument_list', 'children': ['80']}; {'id': '80', 'type': 'call', 'children': ['81', '84']}, {'id': '81', 'type': 'attribute', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'expression'}; {'id': '84', 'type': 'argument_list', 'children': []}, {'id': '85', 'type': 'expression_statement', 'children': ['86']}; {'id': '86', 'type': 'call', 'children': ['87', '92']}, {'id': '87', 'type': 'attribute', 'children': ['88', '91']}; {'id': '88', 'type': 'attribute', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'tokens'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'expect'}; {'id': '92', 'type': 'argument_list', 'children': ['93']}, {'id': '93', 'type': 'attribute', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'common_grammar'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'rparen'}; {'id': '96', 'type': 'return_statement', 'children': ['97']}, {'id': '97', 'type': 'call', 'children': ['98', '101']}; {'id': '98', 'type': 'attribute', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'ast'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'Apply'}, {'id': '101', 'type': 'argument_list', 'children': ['102', '103', '105', '108', '117']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'func'}, {'id': '103', 'type': 'list_splat', 'children': ['104']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'arguments'}, {'id': '105', 'type': 'keyword_argument', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'start'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'start'}; {'id': '108', 'type': 'keyword_argument', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'end'}; {'id': '110', 'type': 'attribute', 'children': ['111', '116']}, {'id': '111', 'type': 'attribute', 'children': ['112', '115']}; {'id': '112', 'type': 'attribute', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'tokens'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'matched'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'end'}, {'id': '117', 'type': 'keyword_argument', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'source'}, {'id': '119', 'type': 'attribute', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'original'} | def application(self, func):
start = self.tokens.matched.start
if self.tokens.accept(common_grammar.rparen):
return ast.Apply(func, start=start, end=self.tokens.matched.end,
source=self.original)
arguments = [self.expression()]
while self.tokens.accept(common_grammar.comma):
arguments.append(self.expression())
self.tokens.expect(common_grammar.rparen)
return ast.Apply(func, *arguments, start=start,
end=self.tokens.matched.end, source=self.original) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'value_eq'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'other'}; {'id': '6', 'type': 'block', 'children': ['7', '20', '34']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'self_sorted'}; {'id': '10', 'type': 'call', 'children': ['11', '14']}, {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'ordered'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'ordered'}; {'id': '14', 'type': 'argument_list', 'children': ['15']}, {'id': '15', 'type': 'call', 'children': ['16', '19']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'getvalues'}, {'id': '19', 'type': 'argument_list', 'children': []}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'other_sorted'}, {'id': '23', 'type': 'call', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'ordered'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'ordered'}, {'id': '27', 'type': 'argument_list', 'children': ['28']}; {'id': '28', 'type': 'call', 'children': ['29', '32']}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'repeated'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'getvalues'}; {'id': '32', 'type': 'argument_list', 'children': ['33']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'other'}; {'id': '34', 'type': 'return_statement', 'children': ['35']}, {'id': '35', 'type': 'comparison_operator', 'children': ['36', '37'], 'value': '=='}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'self_sorted'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'other_sorted'} | def value_eq(self, other):
self_sorted = ordered.ordered(self.getvalues())
other_sorted = ordered.ordered(repeated.getvalues(other))
return self_sorted == other_sorted |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'merge'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'a_intervals'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'b_intervals'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'op'}, {'id': '7', 'type': 'block', 'children': ['8', '20', '32', '48', '53', '58', '62', '66', '70', '82', '177']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}, {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'a_endpoints'}, {'id': '11', 'type': 'call', 'children': ['12', '19']}; {'id': '12', 'type': 'attribute', 'children': ['13', '18']}, {'id': '13', 'type': 'call', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'a_intervals'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'flatten'}, {'id': '17', 'type': 'argument_list', 'children': []}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'tolist'}, {'id': '19', 'type': 'argument_list', 'children': []}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'b_endpoints'}, {'id': '23', 'type': 'call', 'children': ['24', '31']}; {'id': '24', 'type': 'attribute', 'children': ['25', '30']}, {'id': '25', 'type': 'call', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'b_intervals'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'flatten'}, {'id': '29', 'type': 'argument_list', 'children': []}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'tolist'}, {'id': '31', 'type': 'argument_list', 'children': []}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}, {'id': '33', 'type': 'assignment', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'sentinel'}, {'id': '35', 'type': 'binary_operator', 'children': ['36', '47'], 'value': '+'}; {'id': '36', 'type': 'call', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'max'}; {'id': '38', 'type': 'argument_list', 'children': ['39', '43']}, {'id': '39', 'type': 'subscript', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'a_endpoints'}, {'id': '41', 'type': 'unary_operator', 'children': ['42'], 'value': '-'}; {'id': '42', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '43', 'type': 'subscript', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'b_endpoints'}, {'id': '45', 'type': 'unary_operator', 'children': ['46'], 'value': '-'}; {'id': '46', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '47', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '48', 'type': 'expression_statement', 'children': ['49']}, {'id': '49', 'type': 'augmented_assignment', 'children': ['50', '51'], 'value': '+='}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'a_endpoints'}, {'id': '51', 'type': 'list', 'children': ['52'], 'value': '[sentinel]'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'sentinel'}, {'id': '53', 'type': 'expression_statement', 'children': ['54']}; {'id': '54', 'type': 'augmented_assignment', 'children': ['55', '56'], 'value': '+='}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'b_endpoints'}; {'id': '56', 'type': 'list', 'children': ['57'], 'value': '[sentinel]'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'sentinel'}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}, {'id': '59', 'type': 'assignment', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'a_index'}, {'id': '61', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '62', 'type': 'expression_statement', 'children': ['63']}, {'id': '63', 'type': 'assignment', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'b_index'}, {'id': '65', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '66', 'type': 'expression_statement', 'children': ['67']}, {'id': '67', 'type': 'assignment', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'res'}, {'id': '69', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '70', 'type': 'expression_statement', 'children': ['71']}, {'id': '71', 'type': 'assignment', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'scan'}, {'id': '73', 'type': 'call', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'min'}, {'id': '75', 'type': 'argument_list', 'children': ['76', '79']}; {'id': '76', 'type': 'subscript', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'a_endpoints'}; {'id': '78', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '79', 'type': 'subscript', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'b_endpoints'}, {'id': '81', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '82', 'type': 'while_statement', 'children': ['83', '86']}, {'id': '83', 'type': 'comparison_operator', 'children': ['84', '85'], 'value': '<'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'scan'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'sentinel'}; {'id': '86', 'type': 'block', 'children': ['87', '103', '119', '127', '143', '154', '165']}, {'id': '87', 'type': 'expression_statement', 'children': ['88']}; {'id': '88', 'type': 'assignment', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'in_a'}; {'id': '90', 'type': 'not_operator', 'children': ['91']}, {'id': '91', 'type': 'parenthesized_expression', 'children': ['92']}; {'id': '92', 'type': 'binary_operator', 'children': ['93', '99'], 'value': '^'}, {'id': '93', 'type': 'parenthesized_expression', 'children': ['94']}; {'id': '94', 'type': 'comparison_operator', 'children': ['95', '96'], 'value': '<'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'scan'}; {'id': '96', 'type': 'subscript', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'a_endpoints'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'a_index'}, {'id': '99', 'type': 'parenthesized_expression', 'children': ['100']}; {'id': '100', 'type': 'binary_operator', 'children': ['101', '102'], 'value': '%'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'a_index'}; {'id': '102', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '103', 'type': 'expression_statement', 'children': ['104']}; {'id': '104', 'type': 'assignment', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'in_b'}; {'id': '106', 'type': 'not_operator', 'children': ['107']}, {'id': '107', 'type': 'parenthesized_expression', 'children': ['108']}; {'id': '108', 'type': 'binary_operator', 'children': ['109', '115'], 'value': '^'}, {'id': '109', 'type': 'parenthesized_expression', 'children': ['110']}; {'id': '110', 'type': 'comparison_operator', 'children': ['111', '112'], 'value': '<'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'scan'}; {'id': '112', 'type': 'subscript', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'b_endpoints'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'b_index'}, {'id': '115', 'type': 'parenthesized_expression', 'children': ['116']}; {'id': '116', 'type': 'binary_operator', 'children': ['117', '118'], 'value': '%'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'b_index'}; {'id': '118', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '119', 'type': 'expression_statement', 'children': ['120']}; {'id': '120', 'type': 'assignment', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'in_res'}; {'id': '122', 'type': 'call', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'op'}; {'id': '124', 'type': 'argument_list', 'children': ['125', '126']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'in_a'}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'in_b'}, {'id': '127', 'type': 'if_statement', 'children': ['128', '137']}; {'id': '128', 'type': 'binary_operator', 'children': ['129', '130'], 'value': '^'}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'in_res'}; {'id': '130', 'type': 'parenthesized_expression', 'children': ['131']}, {'id': '131', 'type': 'binary_operator', 'children': ['132', '136'], 'value': '%'}; {'id': '132', 'type': 'call', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '134', 'type': 'argument_list', 'children': ['135']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'res'}; {'id': '136', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '137', 'type': 'block', 'children': ['138']}; {'id': '138', 'type': 'expression_statement', 'children': ['139']}, {'id': '139', 'type': 'augmented_assignment', 'children': ['140', '141'], 'value': '+='}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'res'}, {'id': '141', 'type': 'list', 'children': ['142'], 'value': '[scan]'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'scan'}, {'id': '143', 'type': 'if_statement', 'children': ['144', '149']}; {'id': '144', 'type': 'comparison_operator', 'children': ['145', '146'], 'value': '=='}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'scan'}; {'id': '146', 'type': 'subscript', 'children': ['147', '148']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'a_endpoints'}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'a_index'}, {'id': '149', 'type': 'block', 'children': ['150']}; {'id': '150', 'type': 'expression_statement', 'children': ['151']}, {'id': '151', 'type': 'augmented_assignment', 'children': ['152', '153'], 'value': '+='}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'a_index'}, {'id': '153', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '154', 'type': 'if_statement', 'children': ['155', '160']}, {'id': '155', 'type': 'comparison_operator', 'children': ['156', '157'], 'value': '=='}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'scan'}, {'id': '157', 'type': 'subscript', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'b_endpoints'}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'b_index'}; {'id': '160', 'type': 'block', 'children': ['161']}, {'id': '161', 'type': 'expression_statement', 'children': ['162']}; {'id': '162', 'type': 'augmented_assignment', 'children': ['163', '164'], 'value': '+='}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'b_index'}; {'id': '164', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '165', 'type': 'expression_statement', 'children': ['166']}; {'id': '166', 'type': 'assignment', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'scan'}; {'id': '168', 'type': 'call', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'min'}; {'id': '170', 'type': 'argument_list', 'children': ['171', '174']}, {'id': '171', 'type': 'subscript', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'a_endpoints'}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'a_index'}; {'id': '174', 'type': 'subscript', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'b_endpoints'}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'b_index'}, {'id': '177', 'type': 'return_statement', 'children': ['178']}; {'id': '178', 'type': 'call', 'children': ['179', '187']}, {'id': '179', 'type': 'attribute', 'children': ['180', '186']}; {'id': '180', 'type': 'call', 'children': ['181', '184']}, {'id': '181', 'type': 'attribute', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'asarray'}; {'id': '184', 'type': 'argument_list', 'children': ['185']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'res'}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'reshape'}, {'id': '187', 'type': 'argument_list', 'children': ['188']}; {'id': '188', 'type': 'tuple', 'children': ['189', '191']}, {'id': '189', 'type': 'unary_operator', 'children': ['190'], 'value': '-'}; {'id': '190', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '191', 'type': 'integer', 'children': [], 'value': '2'} | def merge(a_intervals, b_intervals, op):
a_endpoints = a_intervals.flatten().tolist()
b_endpoints = b_intervals.flatten().tolist()
sentinel = max(a_endpoints[-1], b_endpoints[-1]) + 1
a_endpoints += [sentinel]
b_endpoints += [sentinel]
a_index = 0
b_index = 0
res = []
scan = min(a_endpoints[0], b_endpoints[0])
while scan < sentinel:
in_a = not ((scan < a_endpoints[a_index]) ^ (a_index % 2))
in_b = not ((scan < b_endpoints[b_index]) ^ (b_index % 2))
in_res = op(in_a, in_b)
if in_res ^ (len(res) % 2):
res += [scan]
if scan == a_endpoints[a_index]:
a_index += 1
if scan == b_endpoints[b_index]:
b_index += 1
scan = min(a_endpoints[a_index], b_endpoints[b_index])
return np.asarray(res).reshape((-1, 2)) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'check_bam'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'bam'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'samtype'}, {'id': '7', 'type': 'string', 'children': [], 'value': '"bam"'}; {'id': '8', 'type': 'block', 'children': ['9', '16', '26', '58', '89', '143']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'call', 'children': ['11', '14']}, {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'ut'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'check_existance'}; {'id': '14', 'type': 'argument_list', 'children': ['15']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'bam'}; {'id': '16', 'type': 'expression_statement', 'children': ['17']}, {'id': '17', 'type': 'assignment', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'samfile'}, {'id': '19', 'type': 'call', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'pysam'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'AlignmentFile'}, {'id': '23', 'type': 'argument_list', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'bam'}, {'id': '25', 'type': 'string', 'children': [], 'value': '"rb"'}; {'id': '26', 'type': 'if_statement', 'children': ['27', '33']}, {'id': '27', 'type': 'not_operator', 'children': ['28']}; {'id': '28', 'type': 'call', 'children': ['29', '32']}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'samfile'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'has_index'}; {'id': '32', 'type': 'argument_list', 'children': []}, {'id': '33', 'type': 'block', 'children': ['34', '41', '51']}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}, {'id': '35', 'type': 'call', 'children': ['36', '39']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'pysam'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '39', 'type': 'argument_list', 'children': ['40']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'bam'}, {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'assignment', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'samfile'}; {'id': '44', 'type': 'call', 'children': ['45', '48']}, {'id': '45', 'type': 'attribute', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'pysam'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'AlignmentFile'}; {'id': '48', 'type': 'argument_list', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'bam'}; {'id': '50', 'type': 'string', 'children': [], 'value': '"rb"'}, {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'call', 'children': ['53', '56']}, {'id': '53', 'type': 'attribute', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'logging'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'info'}; {'id': '56', 'type': 'argument_list', 'children': ['57']}, {'id': '57', 'type': 'string', 'children': [], 'value': '"Nanoget: No index for bam file could be found, created index."'}; {'id': '58', 'type': 'if_statement', 'children': ['59', '69']}, {'id': '59', 'type': 'not_operator', 'children': ['60']}; {'id': '60', 'type': 'comparison_operator', 'children': ['61', '68'], 'value': '=='}, {'id': '61', 'type': 'subscript', 'children': ['62', '67']}; {'id': '62', 'type': 'subscript', 'children': ['63', '66']}, {'id': '63', 'type': 'attribute', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'samfile'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'header'}; {'id': '66', 'type': 'string', 'children': [], 'value': "'HD'"}, {'id': '67', 'type': 'string', 'children': [], 'value': "'SO'"}; {'id': '68', 'type': 'string', 'children': [], 'value': "'coordinate'"}, {'id': '69', 'type': 'block', 'children': ['70', '82']}; {'id': '70', 'type': 'expression_statement', 'children': ['71']}, {'id': '71', 'type': 'call', 'children': ['72', '75']}; {'id': '72', 'type': 'attribute', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'logging'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'error'}, {'id': '75', 'type': 'argument_list', 'children': ['76']}; {'id': '76', 'type': 'call', 'children': ['77', '80']}, {'id': '77', 'type': 'attribute', 'children': ['78', '79']}; {'id': '78', 'type': 'string', 'children': [], 'value': '"Nanoget: Bam file {} not sorted by coordinate!."'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '80', 'type': 'argument_list', 'children': ['81']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'bam'}; {'id': '82', 'type': 'expression_statement', 'children': ['83']}, {'id': '83', 'type': 'call', 'children': ['84', '87']}; {'id': '84', 'type': 'attribute', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'exit'}, {'id': '87', 'type': 'argument_list', 'children': ['88']}; {'id': '88', 'type': 'string', 'children': [], 'value': '"Please use a bam file sorted by coordinate."'}, {'id': '89', 'type': 'if_statement', 'children': ['90', '93']}; {'id': '90', 'type': 'comparison_operator', 'children': ['91', '92'], 'value': '=='}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'samtype'}; {'id': '92', 'type': 'string', 'children': [], 'value': '"bam"'}, {'id': '93', 'type': 'block', 'children': ['94', '112']}; {'id': '94', 'type': 'expression_statement', 'children': ['95']}, {'id': '95', 'type': 'call', 'children': ['96', '99']}; {'id': '96', 'type': 'attribute', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'logging'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'info'}, {'id': '99', 'type': 'argument_list', 'children': ['100']}; {'id': '100', 'type': 'call', 'children': ['101', '104']}, {'id': '101', 'type': 'attribute', 'children': ['102', '103']}; {'id': '102', 'type': 'string', 'children': [], 'value': '"Nanoget: Bam file {} contains {} mapped and {} unmapped reads."'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '104', 'type': 'argument_list', 'children': ['105', '106', '109']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'bam'}; {'id': '106', 'type': 'attribute', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'samfile'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'mapped'}, {'id': '109', 'type': 'attribute', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'samfile'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'unmapped'}; {'id': '112', 'type': 'if_statement', 'children': ['113', '118']}, {'id': '113', 'type': 'comparison_operator', 'children': ['114', '117'], 'value': '=='}; {'id': '114', 'type': 'attribute', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'samfile'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'mapped'}, {'id': '117', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '118', 'type': 'block', 'children': ['119', '131']}, {'id': '119', 'type': 'expression_statement', 'children': ['120']}; {'id': '120', 'type': 'call', 'children': ['121', '124']}, {'id': '121', 'type': 'attribute', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'logging'}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'error'}; {'id': '124', 'type': 'argument_list', 'children': ['125']}, {'id': '125', 'type': 'call', 'children': ['126', '129']}; {'id': '126', 'type': 'attribute', 'children': ['127', '128']}, {'id': '127', 'type': 'string', 'children': [], 'value': '"Nanoget: Bam file {} does not contain aligned reads."'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '129', 'type': 'argument_list', 'children': ['130']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'bam'}, {'id': '131', 'type': 'expression_statement', 'children': ['132']}; {'id': '132', 'type': 'call', 'children': ['133', '136']}, {'id': '133', 'type': 'attribute', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'sys'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'exit'}; {'id': '136', 'type': 'argument_list', 'children': ['137']}, {'id': '137', 'type': 'call', 'children': ['138', '141']}; {'id': '138', 'type': 'attribute', 'children': ['139', '140']}, {'id': '139', 'type': 'string', 'children': [], 'value': '"FATAL: not a single read was mapped in bam file {}"'}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '141', 'type': 'argument_list', 'children': ['142']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'bam'}, {'id': '143', 'type': 'return_statement', 'children': ['144']} | def check_bam(bam, samtype="bam"):
ut.check_existance(bam)
samfile = pysam.AlignmentFile(bam, "rb")
if not samfile.has_index():
pysam.index(bam)
samfile = pysam.AlignmentFile(bam, "rb")
logging.info("Nanoget: No index for bam file could be found, created index.")
if not samfile.header['HD']['SO'] == 'coordinate':
logging.error("Nanoget: Bam file {} not sorted by coordinate!.".format(bam))
sys.exit("Please use a bam file sorted by coordinate.")
if samtype == "bam":
logging.info("Nanoget: Bam file {} contains {} mapped and {} unmapped reads.".format(
bam, samfile.mapped, samfile.unmapped))
if samfile.mapped == 0:
logging.error("Nanoget: Bam file {} does not contain aligned reads.".format(bam))
sys.exit("FATAL: not a single read was mapped in bam file {}".format(bam))
return samfile |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '21']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_input'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12', '15', '18']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'source'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'files'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'threads'}; {'id': '8', 'type': 'integer', 'children': [], 'value': '4'}, {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'readtype'}, {'id': '11', 'type': 'string', 'children': [], 'value': '"1D"'}; {'id': '12', 'type': 'default_parameter', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'combine'}; {'id': '14', 'type': 'string', 'children': [], 'value': '"simple"'}, {'id': '15', 'type': 'default_parameter', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'names'}, {'id': '17', 'type': 'None', 'children': []}; {'id': '18', 'type': 'default_parameter', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'barcoded'}; {'id': '20', 'type': 'False', 'children': []}, {'id': '21', 'type': 'block', 'children': ['22', '66', '77', '83', '143', '174', '181', '196']}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}, {'id': '23', 'type': 'assignment', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'proc_functions'}, {'id': '25', 'type': 'dictionary', 'children': ['26', '31', '36', '41', '46', '51', '56', '61']}; {'id': '26', 'type': 'pair', 'children': ['27', '28']}, {'id': '27', 'type': 'string', 'children': [], 'value': "'fastq'"}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'ex'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'process_fastq_plain'}, {'id': '31', 'type': 'pair', 'children': ['32', '33']}; {'id': '32', 'type': 'string', 'children': [], 'value': "'fasta'"}, {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'ex'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'process_fasta'}; {'id': '36', 'type': 'pair', 'children': ['37', '38']}, {'id': '37', 'type': 'string', 'children': [], 'value': "'bam'"}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'ex'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'process_bam'}, {'id': '41', 'type': 'pair', 'children': ['42', '43']}; {'id': '42', 'type': 'string', 'children': [], 'value': "'summary'"}, {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'ex'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'process_summary'}; {'id': '46', 'type': 'pair', 'children': ['47', '48']}, {'id': '47', 'type': 'string', 'children': [], 'value': "'fastq_rich'"}; {'id': '48', 'type': 'attribute', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'ex'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'process_fastq_rich'}, {'id': '51', 'type': 'pair', 'children': ['52', '53']}; {'id': '52', 'type': 'string', 'children': [], 'value': "'fastq_minimal'"}, {'id': '53', 'type': 'attribute', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'ex'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'process_fastq_minimal'}; {'id': '56', 'type': 'pair', 'children': ['57', '58']}, {'id': '57', 'type': 'string', 'children': [], 'value': "'cram'"}; {'id': '58', 'type': 'attribute', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'ex'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'process_cram'}, {'id': '61', 'type': 'pair', 'children': ['62', '63']}; {'id': '62', 'type': 'string', 'children': [], 'value': "'ubam'"}, {'id': '63', 'type': 'attribute', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'ex'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'process_ubam'}; {'id': '66', 'type': 'expression_statement', 'children': ['67']}, {'id': '67', 'type': 'assignment', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'filethreads'}, {'id': '69', 'type': 'call', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'min'}, {'id': '71', 'type': 'argument_list', 'children': ['72', '76']}; {'id': '72', 'type': 'call', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '74', 'type': 'argument_list', 'children': ['75']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'files'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'threads'}, {'id': '77', 'type': 'expression_statement', 'children': ['78']}; {'id': '78', 'type': 'assignment', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'threadsleft'}; {'id': '80', 'type': 'binary_operator', 'children': ['81', '82'], 'value': '-'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'threads'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'filethreads'}, {'id': '83', 'type': 'with_statement', 'children': ['84', '97']}; {'id': '84', 'type': 'with_clause', 'children': ['85']}, {'id': '85', 'type': 'with_item', 'children': ['86']}; {'id': '86', 'type': 'as_pattern', 'children': ['87', '95']}, {'id': '87', 'type': 'call', 'children': ['88', '91']}; {'id': '88', 'type': 'attribute', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'cfutures'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'ProcessPoolExecutor'}, {'id': '91', 'type': 'argument_list', 'children': ['92']}; {'id': '92', 'type': 'keyword_argument', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'max_workers'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'filethreads'}, {'id': '95', 'type': 'as_pattern_target', 'children': ['96']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'executor'}, {'id': '97', 'type': 'block', 'children': ['98', '116']}; {'id': '98', 'type': 'expression_statement', 'children': ['99']}, {'id': '99', 'type': 'assignment', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'extration_function'}, {'id': '101', 'type': 'call', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'partial'}, {'id': '103', 'type': 'argument_list', 'children': ['104', '107', '110', '113']}; {'id': '104', 'type': 'subscript', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'proc_functions'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'source'}, {'id': '107', 'type': 'keyword_argument', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'threads'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'threadsleft'}; {'id': '110', 'type': 'keyword_argument', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'readtype'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'readtype'}, {'id': '113', 'type': 'keyword_argument', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'barcoded'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'barcoded'}; {'id': '116', 'type': 'expression_statement', 'children': ['117']}, {'id': '117', 'type': 'assignment', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'datadf'}, {'id': '119', 'type': 'call', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'combine_dfs'}, {'id': '121', 'type': 'argument_list', 'children': ['122', '135', '140']}; {'id': '122', 'type': 'keyword_argument', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'dfs'}; {'id': '124', 'type': 'list_comprehension', 'children': ['125', '126']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'out'}; {'id': '126', 'type': 'for_in_clause', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'out'}; {'id': '128', 'type': 'call', 'children': ['129', '132']}, {'id': '129', 'type': 'attribute', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'executor'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'map'}; {'id': '132', 'type': 'argument_list', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'extration_function'}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'files'}, {'id': '135', 'type': 'keyword_argument', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'names'}, {'id': '137', 'type': 'boolean_operator', 'children': ['138', '139'], 'value': 'or'}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'names'}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'files'}; {'id': '140', 'type': 'keyword_argument', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'method'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'combine'}, {'id': '143', 'type': 'if_statement', 'children': ['144', '160']}; {'id': '144', 'type': 'boolean_operator', 'children': ['145', '148'], 'value': 'and'}, {'id': '145', 'type': 'comparison_operator', 'children': ['146', '147'], 'value': 'in'}; {'id': '146', 'type': 'string', 'children': [], 'value': '"readIDs"'}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'datadf'}; {'id': '148', 'type': 'call', 'children': ['149', '159']}, {'id': '149', 'type': 'attribute', 'children': ['150', '158']}; {'id': '150', 'type': 'call', 'children': ['151', '154']}, {'id': '151', 'type': 'attribute', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'pd'}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'isna'}; {'id': '154', 'type': 'argument_list', 'children': ['155']}, {'id': '155', 'type': 'subscript', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'datadf'}, {'id': '157', 'type': 'string', 'children': [], 'value': '"readIDs"'}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'any'}, {'id': '159', 'type': 'argument_list', 'children': []}; {'id': '160', 'type': 'block', 'children': ['161']}, {'id': '161', 'type': 'expression_statement', 'children': ['162']}; {'id': '162', 'type': 'call', 'children': ['163', '166']}, {'id': '163', 'type': 'attribute', 'children': ['164', '165']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'datadf'}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'drop'}; {'id': '166', 'type': 'argument_list', 'children': ['167', '168', '171']}, {'id': '167', 'type': 'string', 'children': [], 'value': '"readIDs"'}; {'id': '168', 'type': 'keyword_argument', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'axis'}; {'id': '170', 'type': 'string', 'children': [], 'value': "'columns'"}, {'id': '171', 'type': 'keyword_argument', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'inplace'}, {'id': '173', 'type': 'True', 'children': []}; {'id': '174', 'type': 'expression_statement', 'children': ['175']}, {'id': '175', 'type': 'assignment', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'datadf'}, {'id': '177', 'type': 'call', 'children': ['178', '179']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'calculate_start_time'}, {'id': '179', 'type': 'argument_list', 'children': ['180']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'datadf'}, {'id': '181', 'type': 'expression_statement', 'children': ['182']}; {'id': '182', 'type': 'call', 'children': ['183', '186']}, {'id': '183', 'type': 'attribute', 'children': ['184', '185']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'logging'}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'info'}; {'id': '186', 'type': 'argument_list', 'children': ['187']}, {'id': '187', 'type': 'call', 'children': ['188', '191']}; {'id': '188', 'type': 'attribute', 'children': ['189', '190']}, {'id': '189', 'type': 'string', 'children': [], 'value': '"Nanoget: Gathered all metrics of {} reads"'}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '191', 'type': 'argument_list', 'children': ['192']}; {'id': '192', 'type': 'call', 'children': ['193', '194']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '194', 'type': 'argument_list', 'children': ['195']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'datadf'}; {'id': '196', 'type': 'if_statement', 'children': ['197', '203', '226']}, {'id': '197', 'type': 'comparison_operator', 'children': ['198', '202'], 'value': '=='}; {'id': '198', 'type': 'call', 'children': ['199', '200']}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '200', 'type': 'argument_list', 'children': ['201']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'datadf'}; {'id': '202', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '203', 'type': 'block', 'children': ['204', '219']}; {'id': '204', 'type': 'expression_statement', 'children': ['205']}, {'id': '205', 'type': 'call', 'children': ['206', '209']}; {'id': '206', 'type': 'attribute', 'children': ['207', '208']}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'logging'}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'critical'}, {'id': '209', 'type': 'argument_list', 'children': ['210']}; {'id': '210', 'type': 'call', 'children': ['211', '214']}, {'id': '211', 'type': 'attribute', 'children': ['212', '213']}; {'id': '212', 'type': 'string', 'children': [], 'value': '"Nanoget: no reads retrieved."'}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '214', 'type': 'argument_list', 'children': ['215']}, {'id': '215', 'type': 'call', 'children': ['216', '217']}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '217', 'type': 'argument_list', 'children': ['218']}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'datadf'}, {'id': '219', 'type': 'expression_statement', 'children': ['220']}; {'id': '220', 'type': 'call', 'children': ['221', '224']}, {'id': '221', 'type': 'attribute', 'children': ['222', '223']}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'sys'}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'exit'}; {'id': '224', 'type': 'argument_list', 'children': ['225']}, {'id': '225', 'type': 'string', 'children': [], 'value': '"Fatal: No reads found in input."'}; {'id': '226', 'type': 'else_clause', 'children': ['227']}, {'id': '227', 'type': 'block', 'children': ['228']}; {'id': '228', 'type': 'return_statement', 'children': ['229']}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'datadf'} | def get_input(source, files, threads=4, readtype="1D",
combine="simple", names=None, barcoded=False):
proc_functions = {
'fastq': ex.process_fastq_plain,
'fasta': ex.process_fasta,
'bam': ex.process_bam,
'summary': ex.process_summary,
'fastq_rich': ex.process_fastq_rich,
'fastq_minimal': ex.process_fastq_minimal,
'cram': ex.process_cram,
'ubam': ex.process_ubam, }
filethreads = min(len(files), threads)
threadsleft = threads - filethreads
with cfutures.ProcessPoolExecutor(max_workers=filethreads) as executor:
extration_function = partial(proc_functions[source],
threads=threadsleft,
readtype=readtype,
barcoded=barcoded)
datadf = combine_dfs(
dfs=[out for out in executor.map(extration_function, files)],
names=names or files,
method=combine)
if "readIDs" in datadf and pd.isna(datadf["readIDs"]).any():
datadf.drop("readIDs", axis='columns', inplace=True)
datadf = calculate_start_time(datadf)
logging.info("Nanoget: Gathered all metrics of {} reads".format(len(datadf)))
if len(datadf) == 0:
logging.critical("Nanoget: no reads retrieved.".format(len(datadf)))
sys.exit("Fatal: No reads found in input.")
else:
return datadf |
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{'id': '16', 'type': 'call', 'children': ['17', '20']}, {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'units'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'validate_wave_unit'}; {'id': '20', 'type': 'argument_list', 'children': ['21']}, {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'wavelengths'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'unit'}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}, {'id': '25', 'type': 'assignment', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'wave'}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'wavelengths'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '30', 'type': 'else_clause', 'children': ['31']}, {'id': '31', 'type': 'block', 'children': ['32']}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}, {'id': '33', 'type': 'assignment', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'wave'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'wavelengths'}; {'id': '36', 'type': 'if_statement', 'children': ['37', '43']}, {'id': '37', 'type': 'call', 'children': ['38', '41']}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'isscalar'}, {'id': '41', 'type': 'argument_list', 'children': ['42']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'wave'}, {'id': '43', 'type': 'block', 'children': ['44']}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}, {'id': '45', 'type': 'assignment', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'wave'}, {'id': '47', 'type': 'list', 'children': ['48'], 'value': '[wave]'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'wave'}, {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'assignment', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'wave'}; {'id': '52', 'type': 'call', 'children': ['53', '56']}, {'id': '53', 'type': 'attribute', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'asarray'}; {'id': '56', 'type': 'argument_list', 'children': ['57']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'wave'}; {'id': '58', 'type': 'if_statement', 'children': ['59', '67']}, {'id': '59', 'type': 'call', 'children': ['60', '63']}; {'id': '60', 'type': 'attribute', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'any'}, {'id': '63', 'type': 'argument_list', 'children': ['64']}; {'id': '64', 'type': 'comparison_operator', 'children': ['65', '66'], 'value': '<='}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'wave'}; {'id': '66', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '67', 'type': 'block', 'children': ['68']}; {'id': '68', 'type': 'raise_statement', 'children': ['69']}, {'id': '69', 'type': 'call', 'children': ['70', '73']}; {'id': '70', 'type': 'attribute', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'exceptions'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'ZeroWavelength'}, {'id': '73', 'type': 'argument_list', 'children': ['74', '75']}; {'id': '74', 'type': 'string', 'children': [], 'value': "'Negative or zero wavelength occurs in wavelength array'"}, {'id': '75', 'type': 'keyword_argument', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'rows'}, {'id': '77', 'type': 'subscript', 'children': ['78', '86']}; {'id': '78', 'type': 'call', 'children': ['79', '82']}, {'id': '79', 'type': 'attribute', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'where'}; {'id': '82', 'type': 'argument_list', 'children': ['83']}, {'id': '83', 'type': 'comparison_operator', 'children': ['84', '85'], 'value': '<='}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'wave'}, {'id': '85', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '86', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '87', 'type': 'expression_statement', 'children': ['88']}; {'id': '88', 'type': 'assignment', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'sorted_wave'}; {'id': '90', 'type': 'call', 'children': ['91', '94']}, {'id': '91', 'type': 'attribute', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '94', 'type': 'argument_list', 'children': ['95']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'wave'}; {'id': '96', 'type': 'if_statement', 'children': ['97', '106']}, {'id': '97', 'type': 'not_operator', 'children': ['98']}; {'id': '98', 'type': 'call', 'children': ['99', '102']}, {'id': '99', 'type': 'attribute', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'alltrue'}; {'id': '102', 'type': 'argument_list', 'children': ['103']}, {'id': '103', 'type': 'comparison_operator', 'children': ['104', '105'], 'value': '=='}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'sorted_wave'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'wave'}; {'id': '106', 'type': 'block', 'children': ['107']}, {'id': '107', 'type': 'if_statement', 'children': ['108', '122', '124']}; {'id': '108', 'type': 'call', 'children': ['109', '112']}, {'id': '109', 'type': 'attribute', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'alltrue'}; {'id': '112', 'type': 'argument_list', 'children': ['113']}, {'id': '113', 'type': 'comparison_operator', 'children': ['114', '121'], 'value': '=='}; {'id': '114', 'type': 'subscript', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'sorted_wave'}; {'id': '116', 'type': 'slice', 'children': ['117', '118', '119']}, {'id': '117', 'type': 'colon', 'children': []}; {'id': '118', 'type': 'colon', 'children': []}, {'id': '119', 'type': 'unary_operator', 'children': ['120'], 'value': '-'}; {'id': '120', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'wave'}; {'id': '122', 'type': 'block', 'children': ['123']}, {'id': '123', 'type': 'pass_statement', 'children': []}; {'id': '124', 'type': 'else_clause', 'children': ['125']}, {'id': '125', 'type': 'block', 'children': ['126']}; {'id': '126', 'type': 'raise_statement', 'children': ['127']}, {'id': '127', 'type': 'call', 'children': ['128', '131']}; 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{'id': '142', 'type': 'identifier', 'children': [], 'value': 'sorted_wave'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'wave'}; {'id': '144', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '145', 'type': 'if_statement', 'children': ['146', '151']}; {'id': '146', 'type': 'comparison_operator', 'children': ['147', '150'], 'value': '>'}, {'id': '147', 'type': 'attribute', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'wave'}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'size'}; {'id': '150', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '151', 'type': 'block', 'children': ['152', '167']}; {'id': '152', 'type': 'expression_statement', 'children': ['153']}, {'id': '153', 'type': 'assignment', 'children': ['154', '155']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'dw'}, {'id': '155', 'type': 'binary_operator', 'children': ['156', '161'], 'value': '-'}; {'id': '156', 'type': 'subscript', 'children': ['157', '158']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'sorted_wave'}; {'id': '158', 'type': 'slice', 'children': ['159', '160']}, {'id': '159', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '160', 'type': 'colon', 'children': []}, {'id': '161', 'type': 'subscript', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'sorted_wave'}, {'id': '163', 'type': 'slice', 'children': ['164', '165']}; {'id': '164', 'type': 'colon', 'children': []}, {'id': '165', 'type': 'unary_operator', 'children': ['166'], 'value': '-'}; {'id': '166', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '167', 'type': 'if_statement', 'children': ['168', '176']}; {'id': '168', 'type': 'call', 'children': ['169', '172']}, {'id': '169', 'type': 'attribute', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'any'}; {'id': '172', 'type': 'argument_list', 'children': ['173']}, {'id': '173', 'type': 'comparison_operator', 'children': ['174', '175'], 'value': '=='}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'dw'}, {'id': '175', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '176', 'type': 'block', 'children': ['177']}, {'id': '177', 'type': 'raise_statement', 'children': ['178']}; {'id': '178', 'type': 'call', 'children': ['179', '182']}, {'id': '179', 'type': 'attribute', 'children': ['180', '181']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'exceptions'}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'DuplicateWavelength'}; {'id': '182', 'type': 'argument_list', 'children': ['183', '184']}, {'id': '183', 'type': 'string', 'children': [], 'value': "'Wavelength array contains duplicate entries'"}; {'id': '184', 'type': 'keyword_argument', 'children': ['185', '186']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'rows'}; {'id': '186', 'type': 'subscript', 'children': ['187', '195']}, {'id': '187', 'type': 'call', 'children': ['188', '191']}; {'id': '188', 'type': 'attribute', 'children': ['189', '190']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'where'}, {'id': '191', 'type': 'argument_list', 'children': ['192']}; {'id': '192', 'type': 'comparison_operator', 'children': ['193', '194'], 'value': '=='}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'dw'}; {'id': '194', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '195', 'type': 'integer', 'children': [], 'value': '0'} | def validate_wavelengths(wavelengths):
if isinstance(wavelengths, u.Quantity):
units.validate_wave_unit(wavelengths.unit)
wave = wavelengths.value
else:
wave = wavelengths
if np.isscalar(wave):
wave = [wave]
wave = np.asarray(wave)
if np.any(wave <= 0):
raise exceptions.ZeroWavelength(
'Negative or zero wavelength occurs in wavelength array',
rows=np.where(wave <= 0)[0])
sorted_wave = np.sort(wave)
if not np.alltrue(sorted_wave == wave):
if np.alltrue(sorted_wave[::-1] == wave):
pass
else:
raise exceptions.UnsortedWavelength(
'Wavelength array is not monotonic',
rows=np.where(sorted_wave != wave)[0])
if wave.size > 1:
dw = sorted_wave[1:] - sorted_wave[:-1]
if np.any(dw == 0):
raise exceptions.DuplicateWavelength(
'Wavelength array contains duplicate entries',
rows=np.where(dw == 0)[0]) |
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if key is self.__marker:
n = len(self._heap)
for pos in reversed(range(n//2)):
self._sink(pos)
else:
try:
pos = self._position[key]
except KeyError:
raise KeyError(key)
self._reheapify(pos) |
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{'id': '16', 'type': 'identifier', 'children': [], 'value': 'typing'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'Optional'}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'DataGroup'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'DataGroup'}, {'id': '21', 'type': 'typed_parameter', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'filter_id'}, {'id': '23', 'type': 'type', 'children': ['24']}; {'id': '24', 'type': 'subscript', 'children': ['25', '28']}, {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'typing'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'Optional'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '29', 'type': 'type', 'children': ['30']}; {'id': '30', 'type': 'None', 'children': []}, {'id': '31', 'type': 'block', 'children': ['32']}; {'id': '32', 'type': 'with_statement', 'children': ['33', '40']}, {'id': '33', 'type': 'with_clause', 'children': ['34']}; {'id': '34', 'type': 'with_item', 'children': ['35']}, {'id': '35', 'type': 'call', 'children': ['36', '39']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'display_items_model'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'changes'}, {'id': '39', 'type': 'argument_list', 'children': []}; {'id': '40', 'type': 'block', 'children': ['41']}, {'id': '41', 'type': 'if_statement', 'children': ['42', '45', '75', '124', '169', '213']}; {'id': '42', 'type': 'comparison_operator', 'children': ['43', '44'], 'value': 'is'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'data_group'}; {'id': '44', 'type': 'None', 'children': []}, {'id': '45', 'type': 'block', 'children': ['46', '52', '63', '69']}; {'id': '46', 'type': 'expression_statement', 'children': ['47']}, {'id': '47', 'type': 'assignment', 'children': ['48', '51']}; {'id': '48', 'type': 'attribute', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'display_items_model'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'container'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'data_group'}; {'id': '52', 'type': 'expression_statement', 'children': ['53']}, {'id': '53', 'type': 'assignment', 'children': ['54', '57']}; {'id': '54', 'type': 'attribute', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'display_items_model'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'filter'}, {'id': '57', 'type': 'call', 'children': ['58', '61']}; {'id': '58', 'type': 'attribute', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'ListModel'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'Filter'}, {'id': '61', 'type': 'argument_list', 'children': ['62']}; {'id': '62', 'type': 'True', 'children': []}, {'id': '63', 'type': 'expression_statement', 'children': ['64']}; {'id': '64', 'type': 'assignment', 'children': ['65', '68']}, {'id': '65', 'type': 'attribute', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'display_items_model'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'sort_key'}; {'id': '68', 'type': 'None', 'children': []}, {'id': '69', 'type': 'expression_statement', 'children': ['70']}; {'id': '70', 'type': 'assignment', 'children': ['71', '74']}, {'id': '71', 'type': 'attribute', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'display_items_model'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'filter_id'}; {'id': '74', 'type': 'None', 'children': []}, {'id': '75', 'type': 'elif_clause', 'children': ['76', '79']}; {'id': '76', 'type': 'comparison_operator', 'children': ['77', '78'], 'value': '=='}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'filter_id'}; {'id': '78', 'type': 'string', 'children': [], 'value': '"latest-session"'}, {'id': '79', 'type': 'block', 'children': ['80', '88', '104', '112', '118']}; {'id': '80', 'type': 'expression_statement', 'children': ['81']}, {'id': '81', 'type': 'assignment', 'children': ['82', '85']}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'display_items_model'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'container'}, {'id': '85', 'type': 'attribute', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'document_model'}; {'id': '88', 'type': 'expression_statement', 'children': ['89']}, {'id': '89', 'type': 'assignment', 'children': ['90', '93']}; {'id': '90', 'type': 'attribute', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'display_items_model'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'filter'}, {'id': '93', 'type': 'call', 'children': ['94', '97']}; {'id': '94', 'type': 'attribute', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'ListModel'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'EqFilter'}, {'id': '97', 'type': 'argument_list', 'children': ['98', '99']}; {'id': '98', 'type': 'string', 'children': [], 'value': '"session_id"'}, {'id': '99', 'type': 'attribute', 'children': ['100', '103']}; {'id': '100', 'type': 'attribute', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'document_model'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'session_id'}; {'id': '104', 'type': 'expression_statement', 'children': ['105']}, {'id': '105', 'type': 'assignment', 'children': ['106', '109']}; {'id': '106', 'type': 'attribute', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'display_items_model'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'sort_key'}, {'id': '109', 'type': 'attribute', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'DataItem'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'sort_by_date_key'}; {'id': '112', 'type': 'expression_statement', 'children': ['113']}, {'id': '113', 'type': 'assignment', 'children': ['114', '117']}; {'id': '114', 'type': 'attribute', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'display_items_model'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'sort_reverse'}, {'id': '117', 'type': 'True', 'children': []}; {'id': '118', 'type': 'expression_statement', 'children': ['119']}, {'id': '119', 'type': 'assignment', 'children': ['120', '123']}; {'id': '120', 'type': 'attribute', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'display_items_model'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'filter_id'}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'filter_id'}; {'id': '124', 'type': 'elif_clause', 'children': ['125', '128']}, {'id': '125', 'type': 'comparison_operator', 'children': ['126', '127'], 'value': '=='}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'filter_id'}, {'id': '127', 'type': 'string', 'children': [], 'value': '"temporary"'}; {'id': '128', 'type': 'block', 'children': ['129', '137', '149', '157', '163']}, {'id': '129', 'type': 'expression_statement', 'children': ['130']}; {'id': '130', 'type': 'assignment', 'children': ['131', '134']}, {'id': '131', 'type': 'attribute', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'display_items_model'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'container'}; {'id': '134', 'type': 'attribute', 'children': ['135', '136']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'document_model'}, {'id': '137', 'type': 'expression_statement', 'children': ['138']}; {'id': '138', 'type': 'assignment', 'children': ['139', '142']}, {'id': '139', 'type': 'attribute', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'display_items_model'}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'filter'}; {'id': '142', 'type': 'call', 'children': ['143', '146']}, {'id': '143', 'type': 'attribute', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'ListModel'}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'NotEqFilter'}; {'id': '146', 'type': 'argument_list', 'children': ['147', '148']}, {'id': '147', 'type': 'string', 'children': [], 'value': '"category"'}; {'id': '148', 'type': 'string', 'children': [], 'value': '"persistent"'}, {'id': '149', 'type': 'expression_statement', 'children': ['150']}; {'id': '150', 'type': 'assignment', 'children': ['151', '154']}, {'id': '151', 'type': 'attribute', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'display_items_model'}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'sort_key'}; {'id': '154', 'type': 'attribute', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'DataItem'}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'sort_by_date_key'}, {'id': '157', 'type': 'expression_statement', 'children': ['158']}; {'id': '158', 'type': 'assignment', 'children': ['159', '162']}, {'id': '159', 'type': 'attribute', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'display_items_model'}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'sort_reverse'}; {'id': '162', 'type': 'True', 'children': []}, {'id': '163', 'type': 'expression_statement', 'children': ['164']}; {'id': '164', 'type': 'assignment', 'children': ['165', '168']}, {'id': '165', 'type': 'attribute', 'children': ['166', '167']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'display_items_model'}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'filter_id'}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'filter_id'}, {'id': '169', 'type': 'elif_clause', 'children': ['170', '173']}; {'id': '170', 'type': 'comparison_operator', 'children': ['171', '172'], 'value': '=='}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'filter_id'}; {'id': '172', 'type': 'string', 'children': [], 'value': '"none"'}, {'id': '173', 'type': 'block', 'children': ['174', '182', '193', '201', '207']}; {'id': '174', 'type': 'expression_statement', 'children': ['175']}, {'id': '175', 'type': 'assignment', 'children': ['176', '179']}; {'id': '176', 'type': 'attribute', 'children': ['177', '178']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'display_items_model'}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'container'}, {'id': '179', 'type': 'attribute', 'children': ['180', '181']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'document_model'}; {'id': '182', 'type': 'expression_statement', 'children': ['183']}, {'id': '183', 'type': 'assignment', 'children': ['184', '187']}; {'id': '184', 'type': 'attribute', 'children': ['185', '186']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'display_items_model'}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'filter'}, {'id': '187', 'type': 'call', 'children': ['188', '191']}; {'id': '188', 'type': 'attribute', 'children': ['189', '190']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'ListModel'}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'Filter'}, {'id': '191', 'type': 'argument_list', 'children': ['192']}; {'id': '192', 'type': 'False', 'children': []}, {'id': '193', 'type': 'expression_statement', 'children': ['194']}; {'id': '194', 'type': 'assignment', 'children': ['195', '198']}, {'id': '195', 'type': 'attribute', 'children': ['196', '197']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'display_items_model'}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'sort_key'}; {'id': '198', 'type': 'attribute', 'children': ['199', '200']}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'DataItem'}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'sort_by_date_key'}, {'id': '201', 'type': 'expression_statement', 'children': ['202']}; {'id': '202', 'type': 'assignment', 'children': ['203', '206']}, {'id': '203', 'type': 'attribute', 'children': ['204', '205']}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'display_items_model'}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'sort_reverse'}; {'id': '206', 'type': 'True', 'children': []}, {'id': '207', 'type': 'expression_statement', 'children': ['208']}; {'id': '208', 'type': 'assignment', 'children': ['209', '212']}, {'id': '209', 'type': 'attribute', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'display_items_model'}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'filter_id'}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'filter_id'}, {'id': '213', 'type': 'else_clause', 'children': ['214']}; {'id': '214', 'type': 'block', 'children': ['215', '223', '235', '243', '249']}, {'id': '215', 'type': 'expression_statement', 'children': ['216']}; {'id': '216', 'type': 'assignment', 'children': ['217', '220']}, {'id': '217', 'type': 'attribute', 'children': ['218', '219']}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'display_items_model'}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'container'}; {'id': '220', 'type': 'attribute', 'children': ['221', '222']}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'document_model'}, {'id': '223', 'type': 'expression_statement', 'children': ['224']}; {'id': '224', 'type': 'assignment', 'children': ['225', '228']}, {'id': '225', 'type': 'attribute', 'children': ['226', '227']}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'display_items_model'}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'filter'}; {'id': '228', 'type': 'call', 'children': ['229', '232']}, {'id': '229', 'type': 'attribute', 'children': ['230', '231']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'ListModel'}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'EqFilter'}; {'id': '232', 'type': 'argument_list', 'children': ['233', '234']}, {'id': '233', 'type': 'string', 'children': [], 'value': '"category"'}; {'id': '234', 'type': 'string', 'children': [], 'value': '"persistent"'}, {'id': '235', 'type': 'expression_statement', 'children': ['236']}; {'id': '236', 'type': 'assignment', 'children': ['237', '240']}, {'id': '237', 'type': 'attribute', 'children': ['238', '239']}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'display_items_model'}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'sort_key'}; {'id': '240', 'type': 'attribute', 'children': ['241', '242']}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'DataItem'}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'sort_by_date_key'}, {'id': '243', 'type': 'expression_statement', 'children': ['244']}; {'id': '244', 'type': 'assignment', 'children': ['245', '248']}, {'id': '245', 'type': 'attribute', 'children': ['246', '247']}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'display_items_model'}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'sort_reverse'}; {'id': '248', 'type': 'True', 'children': []}, {'id': '249', 'type': 'expression_statement', 'children': ['250']}; {'id': '250', 'type': 'assignment', 'children': ['251', '254']}, {'id': '251', 'type': 'attribute', 'children': ['252', '253']}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'display_items_model'}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'filter_id'} | def __update_display_items_model(self, display_items_model: ListModel.FilteredListModel, data_group: typing.Optional[DataGroup.DataGroup], filter_id: typing.Optional[str]) -> None:
with display_items_model.changes():
if data_group is not None:
display_items_model.container = data_group
display_items_model.filter = ListModel.Filter(True)
display_items_model.sort_key = None
display_items_model.filter_id = None
elif filter_id == "latest-session":
display_items_model.container = self.document_model
display_items_model.filter = ListModel.EqFilter("session_id", self.document_model.session_id)
display_items_model.sort_key = DataItem.sort_by_date_key
display_items_model.sort_reverse = True
display_items_model.filter_id = filter_id
elif filter_id == "temporary":
display_items_model.container = self.document_model
display_items_model.filter = ListModel.NotEqFilter("category", "persistent")
display_items_model.sort_key = DataItem.sort_by_date_key
display_items_model.sort_reverse = True
display_items_model.filter_id = filter_id
elif filter_id == "none":
display_items_model.container = self.document_model
display_items_model.filter = ListModel.Filter(False)
display_items_model.sort_key = DataItem.sort_by_date_key
display_items_model.sort_reverse = True
display_items_model.filter_id = filter_id
else:
display_items_model.container = self.document_model
display_items_model.filter = ListModel.EqFilter("category", "persistent")
display_items_model.sort_key = DataItem.sort_by_date_key
display_items_model.sort_reverse = True
display_items_model.filter_id = None |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_by_date_key'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'data_item'}, {'id': '5', 'type': 'block', 'children': ['6']}; {'id': '6', 'type': 'return_statement', 'children': ['7']}, {'id': '7', 'type': 'expression_list', 'children': ['8', '25', '28']}; {'id': '8', 'type': 'conditional_expression', 'children': ['9', '19', '22'], 'value': 'if'}, {'id': '9', 'type': 'binary_operator', 'children': ['10', '13'], 'value': '+'}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'data_item'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'title'}, {'id': '13', 'type': 'call', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '15', 'type': 'argument_list', 'children': ['16']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'data_item'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'uuid'}, {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'data_item'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'is_live'}; {'id': '22', 'type': 'call', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '24', 'type': 'argument_list', 'children': []}, {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'data_item'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'date_for_sorting'}; {'id': '28', 'type': 'call', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '30', 'type': 'argument_list', 'children': ['31']}, {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'data_item'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'uuid'} | def sort_by_date_key(data_item):
return data_item.title + str(data_item.uuid) if data_item.is_live else str(), data_item.date_for_sorting, str(data_item.uuid) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '19']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'open_mfbpchdataset'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'paths'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'concat_dim'}, {'id': '7', 'type': 'string', 'children': [], 'value': "'time'"}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'compat'}; {'id': '10', 'type': 'string', 'children': [], 'value': "'no_conflicts'"}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'preprocess'}, {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'lock'}; {'id': '16', 'type': 'None', 'children': []}, {'id': '17', 'type': 'dictionary_splat_pattern', 'children': ['18']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '19', 'type': 'block', 'children': ['20', '27', '37', '46', '52', '69', '78', '91', '101', '117', '132', '141', '151', '157', '166', '182']}; {'id': '20', 'type': 'import_from_statement', 'children': ['21', '25']}, {'id': '21', 'type': 'dotted_name', 'children': ['22', '23', '24']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'xarray'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'backends'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'api'}, {'id': '25', 'type': 'dotted_name', 'children': ['26']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': '_MultiFileCloser'}, {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'assignment', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'dask'}; {'id': '30', 'type': 'call', 'children': ['31', '34']}, {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'pop'}; {'id': '34', 'type': 'argument_list', 'children': ['35', '36']}, {'id': '35', 'type': 'string', 'children': [], 'value': "'dask'"}; {'id': '36', 'type': 'False', 'children': []}, {'id': '37', 'type': 'if_statement', 'children': ['38', '40']}; {'id': '38', 'type': 'not_operator', 'children': ['39']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'dask'}; {'id': '40', 'type': 'block', 'children': ['41']}, {'id': '41', 'type': 'raise_statement', 'children': ['42']}; {'id': '42', 'type': 'call', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '44', 'type': 'argument_list', 'children': ['45']}, {'id': '45', 'type': 'string', 'children': [], 'value': '"Reading multiple files without dask is not supported"'}; {'id': '46', 'type': 'expression_statement', 'children': ['47']}, {'id': '47', 'type': 'assignment', 'children': ['48', '51']}; {'id': '48', 'type': 'subscript', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '50', 'type': 'string', 'children': [], 'value': "'dask'"}, {'id': '51', 'type': 'True', 'children': []}; {'id': '52', 'type': 'if_statement', 'children': ['53', '58']}, {'id': '53', 'type': 'call', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '55', 'type': 'argument_list', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'paths'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'basestring'}; {'id': '58', 'type': 'block', 'children': ['59']}, {'id': '59', 'type': 'expression_statement', 'children': ['60']}; {'id': '60', 'type': 'assignment', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'paths'}; {'id': '62', 'type': 'call', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '64', 'type': 'argument_list', 'children': ['65']}, {'id': '65', 'type': 'call', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'glob'}, {'id': '67', 'type': 'argument_list', 'children': ['68']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'paths'}, {'id': '69', 'type': 'if_statement', 'children': ['70', '72']}; {'id': '70', 'type': 'not_operator', 'children': ['71']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'paths'}; {'id': '72', 'type': 'block', 'children': ['73']}, {'id': '73', 'type': 'raise_statement', 'children': ['74']}; {'id': '74', 'type': 'call', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'IOError'}; {'id': '76', 'type': 'argument_list', 'children': ['77']}, {'id': '77', 'type': 'string', 'children': [], 'value': '"No paths to files were passed into open_mfbpchdataset"'}; {'id': '78', 'type': 'expression_statement', 'children': ['79']}, {'id': '79', 'type': 'assignment', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'datasets'}, {'id': '81', 'type': 'list_comprehension', 'children': ['82', '88']}; {'id': '82', 'type': 'call', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'open_bpchdataset'}; {'id': '84', 'type': 'argument_list', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'filename'}; {'id': '86', 'type': 'dictionary_splat', 'children': ['87']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '88', 'type': 'for_in_clause', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'filename'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'paths'}, {'id': '91', 'type': 'expression_statement', 'children': ['92']}; {'id': '92', 'type': 'assignment', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'bpch_objs'}; {'id': '94', 'type': 'list_comprehension', 'children': ['95', '98']}, {'id': '95', 'type': 'attribute', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'ds'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': '_file_obj'}; {'id': '98', 'type': 'for_in_clause', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'ds'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'datasets'}, {'id': '101', 'type': 'if_statement', 'children': ['102', '105']}; {'id': '102', 'type': 'comparison_operator', 'children': ['103', '104'], 'value': 'is'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'preprocess'}; {'id': '104', 'type': 'None', 'children': []}, {'id': '105', 'type': 'block', 'children': ['106']}; {'id': '106', 'type': 'expression_statement', 'children': ['107']}, {'id': '107', 'type': 'assignment', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'datasets'}, {'id': '109', 'type': 'list_comprehension', 'children': ['110', '114']}; {'id': '110', 'type': 'call', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'preprocess'}; {'id': '112', 'type': 'argument_list', 'children': ['113']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'ds'}; {'id': '114', 'type': 'for_in_clause', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'ds'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'datasets'}, {'id': '117', 'type': 'expression_statement', 'children': ['118']}; {'id': '118', 'type': 'assignment', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'combined'}; {'id': '120', 'type': 'call', 'children': ['121', '124']}, {'id': '121', 'type': 'attribute', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'xr'}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'auto_combine'}; {'id': '124', 'type': 'argument_list', 'children': ['125', '126', '129']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'datasets'}; {'id': '126', 'type': 'keyword_argument', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'compat'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'compat'}, {'id': '129', 'type': 'keyword_argument', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'concat_dim'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'concat_dim'}; {'id': '132', 'type': 'expression_statement', 'children': ['133']}, {'id': '133', 'type': 'assignment', 'children': ['134', '137']}; {'id': '134', 'type': 'attribute', 'children': ['135', '136']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'combined'}; {'id': '136', 'type': 'identifier', 'children': [], 'value': '_file_obj'}, {'id': '137', 'type': 'call', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': '_MultiFileCloser'}, {'id': '139', 'type': 'argument_list', 'children': ['140']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'bpch_objs'}, {'id': '141', 'type': 'expression_statement', 'children': ['142']}; {'id': '142', 'type': 'assignment', 'children': ['143', '146']}, {'id': '143', 'type': 'attribute', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'combined'}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'attrs'}; {'id': '146', 'type': 'attribute', 'children': ['147', '150']}, {'id': '147', 'type': 'subscript', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'datasets'}, {'id': '149', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'attrs'}, {'id': '151', 'type': 'expression_statement', 'children': ['152']}; {'id': '152', 'type': 'assignment', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'ts'}; {'id': '154', 'type': 'call', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'get_timestamp'}; {'id': '156', 'type': 'argument_list', 'children': []}, {'id': '157', 'type': 'expression_statement', 'children': ['158']}; {'id': '158', 'type': 'assignment', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'fns_str'}; {'id': '160', 'type': 'call', 'children': ['161', '164']}, {'id': '161', 'type': 'attribute', 'children': ['162', '163']}; {'id': '162', 'type': 'string', 'children': [], 'value': '" "'}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '164', 'type': 'argument_list', 'children': ['165']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'paths'}; {'id': '166', 'type': 'expression_statement', 'children': ['167']}, {'id': '167', 'type': 'assignment', 'children': ['168', '173']}; {'id': '168', 'type': 'subscript', 'children': ['169', '172']}, {'id': '169', 'type': 'attribute', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'combined'}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'attrs'}; {'id': '172', 'type': 'string', 'children': [], 'value': "'history'"}, {'id': '173', 'type': 'parenthesized_expression', 'children': ['174']}; {'id': '174', 'type': 'call', 'children': ['175', '178']}, {'id': '175', 'type': 'attribute', 'children': ['176', '177']}; {'id': '176', 'type': 'string', 'children': [], 'value': '"{}: Processed/loaded by xbpch-{} from {}"'}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '178', 'type': 'argument_list', 'children': ['179', '180', '181']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'ts'}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'ver'}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'fns_str'}; {'id': '182', 'type': 'return_statement', 'children': ['183']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'combined'} | def open_mfbpchdataset(paths, concat_dim='time', compat='no_conflicts',
preprocess=None, lock=None, **kwargs):
from xarray.backends.api import _MultiFileCloser
dask = kwargs.pop('dask', False)
if not dask:
raise ValueError("Reading multiple files without dask is not supported")
kwargs['dask'] = True
if isinstance(paths, basestring):
paths = sorted(glob(paths))
if not paths:
raise IOError("No paths to files were passed into open_mfbpchdataset")
datasets = [open_bpchdataset(filename, **kwargs)
for filename in paths]
bpch_objs = [ds._file_obj for ds in datasets]
if preprocess is not None:
datasets = [preprocess(ds) for ds in datasets]
combined = xr.auto_combine(datasets, compat=compat, concat_dim=concat_dim)
combined._file_obj = _MultiFileCloser(bpch_objs)
combined.attrs = datasets[0].attrs
ts = get_timestamp()
fns_str = " ".join(paths)
combined.attrs['history'] = (
"{}: Processed/loaded by xbpch-{} from {}"
.format(ts, ver, fns_str)
)
return combined |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_get_archive_filelist'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'filename'}, {'id': '5', 'type': 'block', 'children': ['6', '10', '88', '100']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'names'}, {'id': '9', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '10', 'type': 'if_statement', 'children': ['11', '17', '42', '74']}, {'id': '11', 'type': 'call', 'children': ['12', '15']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'tarfile'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'is_tarfile'}, {'id': '15', 'type': 'argument_list', 'children': ['16']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'filename'}, {'id': '17', 'type': 'block', 'children': ['18']}; {'id': '18', 'type': 'with_statement', 'children': ['19', '30']}, {'id': '19', 'type': 'with_clause', 'children': ['20']}; {'id': '20', 'type': 'with_item', 'children': ['21']}, {'id': '21', 'type': 'as_pattern', 'children': ['22', '28']}; {'id': '22', 'type': 'call', 'children': ['23', '26']}, {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'tarfile'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '26', 'type': 'argument_list', 'children': ['27']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'filename'}; {'id': '28', 'type': 'as_pattern_target', 'children': ['29']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'tar_file'}; {'id': '30', 'type': 'block', 'children': ['31']}, {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'assignment', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'names'}; {'id': '34', 'type': 'call', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '36', 'type': 'argument_list', 'children': ['37']}, {'id': '37', 'type': 'call', 'children': ['38', '41']}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'tar_file'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'getnames'}, {'id': '41', 'type': 'argument_list', 'children': []}; {'id': '42', 'type': 'elif_clause', 'children': ['43', '49']}, {'id': '43', 'type': 'call', 'children': ['44', '47']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'zipfile'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'is_zipfile'}, {'id': '47', 'type': 'argument_list', 'children': ['48']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'filename'}, {'id': '49', 'type': 'block', 'children': ['50']}; {'id': '50', 'type': 'with_statement', 'children': ['51', '62']}, {'id': '51', 'type': 'with_clause', 'children': ['52']}; {'id': '52', 'type': 'with_item', 'children': ['53']}, {'id': '53', 'type': 'as_pattern', 'children': ['54', '60']}; {'id': '54', 'type': 'call', 'children': ['55', '58']}, {'id': '55', 'type': 'attribute', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'zipfile'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'ZipFile'}; {'id': '58', 'type': 'argument_list', 'children': ['59']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'filename'}; {'id': '60', 'type': 'as_pattern_target', 'children': ['61']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'zip_file'}; {'id': '62', 'type': 'block', 'children': ['63']}, {'id': '63', 'type': 'expression_statement', 'children': ['64']}; {'id': '64', 'type': 'assignment', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'names'}; {'id': '66', 'type': 'call', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '68', 'type': 'argument_list', 'children': ['69']}, {'id': '69', 'type': 'call', 'children': ['70', '73']}; {'id': '70', 'type': 'attribute', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'zip_file'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'namelist'}, {'id': '73', 'type': 'argument_list', 'children': []}; {'id': '74', 'type': 'else_clause', 'children': ['75']}, {'id': '75', 'type': 'block', 'children': ['76']}; {'id': '76', 'type': 'raise_statement', 'children': ['77']}, {'id': '77', 'type': 'call', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '79', 'type': 'argument_list', 'children': ['80']}; {'id': '80', 'type': 'call', 'children': ['81', '86']}, {'id': '81', 'type': 'attribute', 'children': ['82', '85']}; {'id': '82', 'type': 'concatenated_string', 'children': ['83', '84']}, {'id': '83', 'type': 'string', 'children': [], 'value': '"Can not get filenames from \'{!s}\'. "'}; {'id': '84', 'type': 'string', 'children': [], 'value': '"Not a tar or zip file"'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '86', 'type': 'argument_list', 'children': ['87']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'filename'}; {'id': '88', 'type': 'if_statement', 'children': ['89', '92']}, {'id': '89', 'type': 'comparison_operator', 'children': ['90', '91'], 'value': 'in'}; {'id': '90', 'type': 'string', 'children': [], 'value': '"./"'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'names'}; {'id': '92', 'type': 'block', 'children': ['93']}, {'id': '93', 'type': 'expression_statement', 'children': ['94']}; {'id': '94', 'type': 'call', 'children': ['95', '98']}, {'id': '95', 'type': 'attribute', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'names'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'remove'}; {'id': '98', 'type': 'argument_list', 'children': ['99']}, {'id': '99', 'type': 'string', 'children': [], 'value': '"./"'}; {'id': '100', 'type': 'return_statement', 'children': ['101']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'names'} | def _get_archive_filelist(filename):
names = []
if tarfile.is_tarfile(filename):
with tarfile.open(filename) as tar_file:
names = sorted(tar_file.getnames())
elif zipfile.is_zipfile(filename):
with zipfile.ZipFile(filename) as zip_file:
names = sorted(zip_file.namelist())
else:
raise ValueError("Can not get filenames from '{!s}'. "
"Not a tar or zip file".format(filename))
if "./" in names:
names.remove("./")
return names |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'pbar_strings'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'files'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'desc'}, {'id': '7', 'type': 'string', 'children': [], 'value': "''"}; {'id': '8', 'type': 'dictionary_splat_pattern', 'children': ['9']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '10', 'type': 'block', 'children': ['11']}, {'id': '11', 'type': 'return_statement', 'children': ['12']}; {'id': '12', 'type': 'call', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'tqdm'}; {'id': '14', 'type': 'argument_list', 'children': ['15', '29', '51', '54']}, {'id': '15', 'type': 'call', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '17', 'type': 'argument_list', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'files'}, {'id': '19', 'type': 'keyword_argument', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '21', 'type': 'lambda', 'children': ['22', '24']}; {'id': '22', 'type': 'lambda_parameters', 'children': ['23']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '24', 'type': 'call', 'children': ['25', '28']}, {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 's'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'lower'}; {'id': '28', 'type': 'argument_list', 'children': []}, {'id': '29', 'type': 'keyword_argument', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'desc'}, {'id': '31', 'type': 'parenthesized_expression', 'children': ['32']}; {'id': '32', 'type': 'binary_operator', 'children': ['33', '50'], 'value': '+'}, {'id': '33', 'type': 'binary_operator', 'children': ['34', '49'], 'value': '+'}; {'id': '34', 'type': 'binary_operator', 'children': ['35', '36'], 'value': '+'}, {'id': '35', 'type': 'string', 'children': [], 'value': "'<'"}; {'id': '36', 'type': 'call', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '38', 'type': 'argument_list', 'children': ['39']}, {'id': '39', 'type': 'call', 'children': ['40', '47']}; {'id': '40', 'type': 'attribute', 'children': ['41', '46']}, {'id': '41', 'type': 'call', 'children': ['42', '45']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'datetime'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'now'}, {'id': '45', 'type': 'argument_list', 'children': []}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'strftime'}, {'id': '47', 'type': 'argument_list', 'children': ['48']}; {'id': '48', 'type': 'string', 'children': [], 'value': '"%Y-%m-%d %H:%M:%S"'}, {'id': '49', 'type': 'string', 'children': [], 'value': "'> '"}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'desc'}, {'id': '51', 'type': 'keyword_argument', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'dynamic_ncols'}, {'id': '53', 'type': 'True', 'children': []}; {'id': '54', 'type': 'dictionary_splat', 'children': ['55']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'kwargs'} | def pbar_strings(files, desc='', **kwargs):
return tqdm(
sorted(files, key=lambda s: s.lower()),
desc=('<' + str(datetime.now().strftime("%Y-%m-%d %H:%M:%S")) + '> ' +
desc),
dynamic_ncols=True,
**kwargs) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_func'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '6', 'type': 'block', 'children': ['7', '18', '29', '40']}, {'id': '7', 'type': 'if_statement', 'children': ['8', '15']}; {'id': '8', 'type': 'comparison_operator', 'children': ['9', '10'], 'value': '=='}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '10', 'type': 'attribute', 'children': ['11', '14']}, {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': '_KEYS'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'TIME'}, {'id': '15', 'type': 'block', 'children': ['16']}; {'id': '16', 'type': 'return_statement', 'children': ['17']}, {'id': '17', 'type': 'string', 'children': [], 'value': "'aaa'"}; {'id': '18', 'type': 'if_statement', 'children': ['19', '26']}, {'id': '19', 'type': 'comparison_operator', 'children': ['20', '21'], 'value': '=='}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '21', 'type': 'attribute', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': '_KEYS'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'DATA'}; {'id': '26', 'type': 'block', 'children': ['27']}, {'id': '27', 'type': 'return_statement', 'children': ['28']}; {'id': '28', 'type': 'string', 'children': [], 'value': "'zzy'"}, {'id': '29', 'type': 'if_statement', 'children': ['30', '37']}; {'id': '30', 'type': 'comparison_operator', 'children': ['31', '32'], 'value': '=='}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '32', 'type': 'attribute', 'children': ['33', '36']}, {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': '_KEYS'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'SOURCE'}, {'id': '37', 'type': 'block', 'children': ['38']}; {'id': '38', 'type': 'return_statement', 'children': ['39']}, {'id': '39', 'type': 'string', 'children': [], 'value': "'zzz'"}; {'id': '40', 'type': 'return_statement', 'children': ['41']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'key'} | def sort_func(self, key):
if key == self._KEYS.TIME:
return 'aaa'
if key == self._KEYS.DATA:
return 'zzy'
if key == self._KEYS.SOURCE:
return 'zzz'
return key |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_func'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '6', 'type': 'block', 'children': ['7', '18', '29']}, {'id': '7', 'type': 'if_statement', 'children': ['8', '15']}; {'id': '8', 'type': 'comparison_operator', 'children': ['9', '10'], 'value': '=='}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '10', 'type': 'attribute', 'children': ['11', '14']}, {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': '_KEYS'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'VALUE'}, {'id': '15', 'type': 'block', 'children': ['16']}; {'id': '16', 'type': 'return_statement', 'children': ['17']}, {'id': '17', 'type': 'string', 'children': [], 'value': "'aaa'"}; {'id': '18', 'type': 'if_statement', 'children': ['19', '26']}, {'id': '19', 'type': 'comparison_operator', 'children': ['20', '21'], 'value': '=='}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '21', 'type': 'attribute', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': '_KEYS'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'SOURCE'}; {'id': '26', 'type': 'block', 'children': ['27']}, {'id': '27', 'type': 'return_statement', 'children': ['28']}; {'id': '28', 'type': 'string', 'children': [], 'value': "'zzz'"}, {'id': '29', 'type': 'return_statement', 'children': ['30']} | def sort_func(self, key):
if key == self._KEYS.VALUE:
return 'aaa'
if key == self._KEYS.SOURCE:
return 'zzz'
return key |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_func'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '6', 'type': 'block', 'children': ['7', '18', '29', '40', '51', '62', '73', '84']}, {'id': '7', 'type': 'if_statement', 'children': ['8', '15']}; {'id': '8', 'type': 'comparison_operator', 'children': ['9', '10'], 'value': '=='}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '10', 'type': 'attribute', 'children': ['11', '14']}, {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': '_KEYS'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'SCHEMA'}, {'id': '15', 'type': 'block', 'children': ['16']}; {'id': '16', 'type': 'return_statement', 'children': ['17']}, {'id': '17', 'type': 'string', 'children': [], 'value': "'aaa'"}; {'id': '18', 'type': 'if_statement', 'children': ['19', '26']}, {'id': '19', 'type': 'comparison_operator', 'children': ['20', '21'], 'value': '=='}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '21', 'type': 'attribute', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': '_KEYS'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'NAME'}; {'id': '26', 'type': 'block', 'children': ['27']}, {'id': '27', 'type': 'return_statement', 'children': ['28']}; {'id': '28', 'type': 'string', 'children': [], 'value': "'aab'"}, {'id': '29', 'type': 'if_statement', 'children': ['30', '37']}; {'id': '30', 'type': 'comparison_operator', 'children': ['31', '32'], 'value': '=='}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '32', 'type': 'attribute', 'children': ['33', '36']}, {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': '_KEYS'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'SOURCES'}, {'id': '37', 'type': 'block', 'children': ['38']}; {'id': '38', 'type': 'return_statement', 'children': ['39']}, {'id': '39', 'type': 'string', 'children': [], 'value': "'aac'"}; {'id': '40', 'type': 'if_statement', 'children': ['41', '48']}, {'id': '41', 'type': 'comparison_operator', 'children': ['42', '43'], 'value': '=='}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '43', 'type': 'attribute', 'children': ['44', '47']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': '_KEYS'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'ALIAS'}; {'id': '48', 'type': 'block', 'children': ['49']}, {'id': '49', 'type': 'return_statement', 'children': ['50']}; {'id': '50', 'type': 'string', 'children': [], 'value': "'aad'"}, {'id': '51', 'type': 'if_statement', 'children': ['52', '59']}; {'id': '52', 'type': 'comparison_operator', 'children': ['53', '54'], 'value': '=='}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '54', 'type': 'attribute', 'children': ['55', '58']}, {'id': '55', 'type': 'attribute', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': '_KEYS'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'MODELS'}, {'id': '59', 'type': 'block', 'children': ['60']}; {'id': '60', 'type': 'return_statement', 'children': ['61']}, {'id': '61', 'type': 'string', 'children': [], 'value': "'aae'"}; {'id': '62', 'type': 'if_statement', 'children': ['63', '70']}, {'id': '63', 'type': 'comparison_operator', 'children': ['64', '65'], 'value': '=='}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '65', 'type': 'attribute', 'children': ['66', '69']}; {'id': '66', 'type': 'attribute', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': '_KEYS'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'PHOTOMETRY'}; {'id': '70', 'type': 'block', 'children': ['71']}, {'id': '71', 'type': 'return_statement', 'children': ['72']}; {'id': '72', 'type': 'string', 'children': [], 'value': "'zzy'"}, {'id': '73', 'type': 'if_statement', 'children': ['74', '81']}; {'id': '74', 'type': 'comparison_operator', 'children': ['75', '76'], 'value': '=='}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '76', 'type': 'attribute', 'children': ['77', '80']}, {'id': '77', 'type': 'attribute', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': '_KEYS'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'SPECTRA'}, {'id': '81', 'type': 'block', 'children': ['82']}; {'id': '82', 'type': 'return_statement', 'children': ['83']}, {'id': '83', 'type': 'string', 'children': [], 'value': "'zzz'"}; {'id': '84', 'type': 'return_statement', 'children': ['85']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'key'} | def sort_func(self, key):
if key == self._KEYS.SCHEMA:
return 'aaa'
if key == self._KEYS.NAME:
return 'aab'
if key == self._KEYS.SOURCES:
return 'aac'
if key == self._KEYS.ALIAS:
return 'aad'
if key == self._KEYS.MODELS:
return 'aae'
if key == self._KEYS.PHOTOMETRY:
return 'zzy'
if key == self._KEYS.SPECTRA:
return 'zzz'
return key |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_func'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '6', 'type': 'block', 'children': ['7', '18', '29', '40']}, {'id': '7', 'type': 'if_statement', 'children': ['8', '15']}; {'id': '8', 'type': 'comparison_operator', 'children': ['9', '10'], 'value': '=='}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '10', 'type': 'attribute', 'children': ['11', '14']}, {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': '_KEYS'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'TIME'}, {'id': '15', 'type': 'block', 'children': ['16']}; {'id': '16', 'type': 'return_statement', 'children': ['17']}, {'id': '17', 'type': 'string', 'children': [], 'value': "'aaa'"}; {'id': '18', 'type': 'if_statement', 'children': ['19', '26']}, {'id': '19', 'type': 'comparison_operator', 'children': ['20', '21'], 'value': '=='}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '21', 'type': 'attribute', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': '_KEYS'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'MODEL'}; {'id': '26', 'type': 'block', 'children': ['27']}, {'id': '27', 'type': 'return_statement', 'children': ['28']}; {'id': '28', 'type': 'string', 'children': [], 'value': "'zzy'"}, {'id': '29', 'type': 'if_statement', 'children': ['30', '37']}; {'id': '30', 'type': 'comparison_operator', 'children': ['31', '32'], 'value': '=='}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '32', 'type': 'attribute', 'children': ['33', '36']}, {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': '_KEYS'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'SOURCE'}, {'id': '37', 'type': 'block', 'children': ['38']}; {'id': '38', 'type': 'return_statement', 'children': ['39']}, {'id': '39', 'type': 'string', 'children': [], 'value': "'zzz'"}; {'id': '40', 'type': 'return_statement', 'children': ['41']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'key'} | def sort_func(self, key):
if key == self._KEYS.TIME:
return 'aaa'
if key == self._KEYS.MODEL:
return 'zzy'
if key == self._KEYS.SOURCE:
return 'zzz'
return key |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'TypeFactory'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'type_'}, {'id': '5', 'type': 'block', 'children': ['6', '21', '40']}; {'id': '6', 'type': 'if_statement', 'children': ['7', '18']}, {'id': '7', 'type': 'boolean_operator', 'children': ['8', '13'], 'value': 'and'}; {'id': '8', 'type': 'call', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '10', 'type': 'argument_list', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'type_'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'type'}, {'id': '13', 'type': 'call', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'issubclass'}, {'id': '15', 'type': 'argument_list', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'type_'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'Type'}; {'id': '18', 'type': 'block', 'children': ['19']}, {'id': '19', 'type': 'return_statement', 'children': ['20']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'type_'}, {'id': '21', 'type': 'for_statement', 'children': ['22', '23', '24']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': '__types__'}; {'id': '24', 'type': 'block', 'children': ['25']}, {'id': '25', 'type': 'if_statement', 'children': ['26', '32']}; {'id': '26', 'type': 'call', 'children': ['27', '30']}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'represents'}; {'id': '30', 'type': 'argument_list', 'children': ['31']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'type_'}; {'id': '32', 'type': 'block', 'children': ['33']}, {'id': '33', 'type': 'return_statement', 'children': ['34']}; {'id': '34', 'type': 'call', 'children': ['35', '38']}, {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '38', 'type': 'argument_list', 'children': ['39']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'type_'}; {'id': '40', 'type': 'raise_statement', 'children': ['41']}, {'id': '41', 'type': 'call', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'UnknownType'}, {'id': '43', 'type': 'argument_list', 'children': ['44']} | def TypeFactory(type_):
if isinstance(type_, type) and issubclass(type_, Type):
return type_
for x in __types__:
if x.represents(type_):
return x.get(type_)
raise UnknownType(type_) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_sorted_dependencies'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'service_model'}, {'id': '5', 'type': 'block', 'children': ['6', '21', '33', '60', '77']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'app_models'}, {'id': '9', 'type': 'call', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '11', 'type': 'argument_list', 'children': ['12']}; {'id': '12', 'type': 'call', 'children': ['13', '20']}, {'id': '13', 'type': 'attribute', 'children': ['14', '19']}; {'id': '14', 'type': 'attribute', 'children': ['15', '18']}, {'id': '15', 'type': 'attribute', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'service_model'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': '_meta'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'app_config'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'get_models'}; {'id': '20', 'type': 'argument_list', 'children': []}, {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'dependencies'}; {'id': '24', 'type': 'dictionary_comprehension', 'children': ['25', '30']}, {'id': '25', 'type': 'pair', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'model'}, {'id': '27', 'type': 'call', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '29', 'type': 'argument_list', 'children': []}; {'id': '30', 'type': 'for_in_clause', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'model'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'app_models'}, {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'assignment', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'relations'}; {'id': '36', 'type': 'generator_expression', 'children': ['37', '38', '41', '48']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'relation'}; {'id': '38', 'type': 'for_in_clause', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'model'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'app_models'}, {'id': '41', 'type': 'for_in_clause', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'relation'}, {'id': '43', 'type': 'attribute', 'children': ['44', '47']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'model'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': '_meta'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'related_objects'}; {'id': '48', 'type': 'if_clause', 'children': ['49']}, {'id': '49', 'type': 'comparison_operator', 'children': ['50', '53'], 'value': 'in'}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'relation'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'on_delete'}, {'id': '53', 'type': 'tuple', 'children': ['54', '57']}; {'id': '54', 'type': 'attribute', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'models'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'PROTECT'}, {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'models'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'CASCADE'}; {'id': '60', 'type': 'for_statement', 'children': ['61', '62', '63']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'rel'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'relations'}, {'id': '63', 'type': 'block', 'children': ['64']}; {'id': '64', 'type': 'expression_statement', 'children': ['65']}, {'id': '65', 'type': 'call', 'children': ['66', '73']}; {'id': '66', 'type': 'attribute', 'children': ['67', '72']}, {'id': '67', 'type': 'subscript', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'dependencies'}, {'id': '69', 'type': 'attribute', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'rel'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'model'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'add'}, {'id': '73', 'type': 'argument_list', 'children': ['74']}; {'id': '74', 'type': 'attribute', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'rel'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'related_model'}, {'id': '77', 'type': 'return_statement', 'children': ['78']}; {'id': '78', 'type': 'call', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'stable_topological_sort'}; {'id': '80', 'type': 'argument_list', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'app_models'} | def get_sorted_dependencies(service_model):
app_models = list(service_model._meta.app_config.get_models())
dependencies = {model: set() for model in app_models}
relations = (
relation
for model in app_models
for relation in model._meta.related_objects
if relation.on_delete in (models.PROTECT, models.CASCADE)
)
for rel in relations:
dependencies[rel.model].add(rel.related_model)
return stable_topological_sort(app_models, dependencies) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'format_time_and_value_to_segment_list'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'time_and_value_list'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'segments_count'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'start_timestamp'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'end_timestamp'}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'average'}; {'id': '10', 'type': 'False', 'children': []}, {'id': '11', 'type': 'block', 'children': ['12', '16', '25', '104']}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}, {'id': '13', 'type': 'assignment', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'segment_list'}, {'id': '15', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '16', 'type': 'expression_statement', 'children': ['17']}, {'id': '17', 'type': 'assignment', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'time_step'}, {'id': '19', 'type': 'binary_operator', 'children': ['20', '24'], 'value': '/'}; {'id': '20', 'type': 'parenthesized_expression', 'children': ['21']}, {'id': '21', 'type': 'binary_operator', 'children': ['22', '23'], 'value': '-'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'end_timestamp'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'start_timestamp'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'segments_count'}, {'id': '25', 'type': 'for_statement', 'children': ['26', '27', '31']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '27', 'type': 'call', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'range'}, {'id': '29', 'type': 'argument_list', 'children': ['30']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'segments_count'}, {'id': '31', 'type': 'block', 'children': ['32', '40', '46', '64', '71', '88']}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}, {'id': '33', 'type': 'assignment', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'segment_start_timestamp'}, {'id': '35', 'type': 'binary_operator', 'children': ['36', '37'], 'value': '+'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'start_timestamp'}, {'id': '37', 'type': 'binary_operator', 'children': ['38', '39'], 'value': '*'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'time_step'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '40', 'type': 'expression_statement', 'children': ['41']}, {'id': '41', 'type': 'assignment', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'segment_end_timestamp'}, {'id': '43', 'type': 'binary_operator', 'children': ['44', '45'], 'value': '+'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'segment_start_timestamp'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'time_step'}; {'id': '46', 'type': 'expression_statement', 'children': ['47']}, {'id': '47', 'type': 'assignment', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'value_list'}, {'id': '49', 'type': 'list_comprehension', 'children': ['50', '51', '56']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'value'}, {'id': '51', 'type': 'for_in_clause', 'children': ['52', '55']}; {'id': '52', 'type': 'pattern_list', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'time'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'value'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'time_and_value_list'}; {'id': '56', 'type': 'if_clause', 'children': ['57']}, {'id': '57', 'type': 'boolean_operator', 'children': ['58', '61'], 'value': 'and'}; {'id': '58', 'type': 'comparison_operator', 'children': ['59', '60'], 'value': '>='}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'time'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'segment_start_timestamp'}, {'id': '61', 'type': 'comparison_operator', 'children': ['62', '63'], 'value': '<'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'time'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'segment_end_timestamp'}; {'id': '64', 'type': 'expression_statement', 'children': ['65']}, {'id': '65', 'type': 'assignment', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'segment_value'}, {'id': '67', 'type': 'call', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'sum'}, {'id': '69', 'type': 'argument_list', 'children': ['70']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'value_list'}, {'id': '71', 'type': 'if_statement', 'children': ['72', '80']}; {'id': '72', 'type': 'boolean_operator', 'children': ['73', '74'], 'value': 'and'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'average'}; {'id': '74', 'type': 'comparison_operator', 'children': ['75', '79'], 'value': '!='}, {'id': '75', 'type': 'call', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '77', 'type': 'argument_list', 'children': ['78']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'value_list'}, {'id': '79', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '80', 'type': 'block', 'children': ['81']}, {'id': '81', 'type': 'expression_statement', 'children': ['82']}; {'id': '82', 'type': 'augmented_assignment', 'children': ['83', '84'], 'value': '/='}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'segment_value'}; {'id': '84', 'type': 'call', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '86', 'type': 'argument_list', 'children': ['87']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'value_list'}; {'id': '88', 'type': 'expression_statement', 'children': ['89']}, {'id': '89', 'type': 'call', 'children': ['90', '93']}; {'id': '90', 'type': 'attribute', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'segment_list'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '93', 'type': 'argument_list', 'children': ['94']}; {'id': '94', 'type': 'dictionary', 'children': ['95', '98', '101']}, {'id': '95', 'type': 'pair', 'children': ['96', '97']}; {'id': '96', 'type': 'string', 'children': [], 'value': "'from'"}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'segment_start_timestamp'}; {'id': '98', 'type': 'pair', 'children': ['99', '100']}, {'id': '99', 'type': 'string', 'children': [], 'value': "'to'"}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'segment_end_timestamp'}, {'id': '101', 'type': 'pair', 'children': ['102', '103']}; {'id': '102', 'type': 'string', 'children': [], 'value': "'value'"}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'segment_value'}; {'id': '104', 'type': 'return_statement', 'children': ['105']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'segment_list'} | def format_time_and_value_to_segment_list(time_and_value_list, segments_count, start_timestamp,
end_timestamp, average=False):
segment_list = []
time_step = (end_timestamp - start_timestamp) / segments_count
for i in range(segments_count):
segment_start_timestamp = start_timestamp + time_step * i
segment_end_timestamp = segment_start_timestamp + time_step
value_list = [
value for time, value in time_and_value_list
if time >= segment_start_timestamp and time < segment_end_timestamp]
segment_value = sum(value_list)
if average and len(value_list) != 0:
segment_value /= len(value_list)
segment_list.append({
'from': segment_start_timestamp,
'to': segment_end_timestamp,
'value': segment_value,
})
return segment_list |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_api_root_view'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'api_urls'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9', '15', '25', '47', '154']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'api_root_dict'}; {'id': '12', 'type': 'call', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'OrderedDict'}; {'id': '14', 'type': 'argument_list', 'children': []}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'list_name'}; {'id': '18', 'type': 'attribute', 'children': ['19', '24']}, {'id': '19', 'type': 'subscript', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'routes'}, {'id': '23', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '25', 'type': 'for_statement', 'children': ['26', '30', '33']}; {'id': '26', 'type': 'pattern_list', 'children': ['27', '28', '29']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'prefix'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'viewset'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'basename'}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'registry'}, {'id': '33', 'type': 'block', 'children': ['34']}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}, {'id': '35', 'type': 'assignment', 'children': ['36', '39']}; {'id': '36', 'type': 'subscript', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'api_root_dict'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'prefix'}, {'id': '39', 'type': 'call', 'children': ['40', '43']}; {'id': '40', 'type': 'attribute', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'list_name'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '43', 'type': 'argument_list', 'children': ['44']}; {'id': '44', 'type': 'keyword_argument', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'basename'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'basename'}, {'id': '47', 'type': 'class_definition', 'children': ['48', '49', '53']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'APIRootView'}, {'id': '49', 'type': 'argument_list', 'children': ['50']}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'views'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'APIView'}, {'id': '53', 'type': 'block', 'children': ['54', '58', '62']}; {'id': '54', 'type': 'expression_statement', 'children': ['55']}, {'id': '55', 'type': 'assignment', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': '_ignore_model_permissions'}, {'id': '57', 'type': 'True', 'children': []}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}, {'id': '59', 'type': 'assignment', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'exclude_from_schema'}, {'id': '61', 'type': 'True', 'children': []}; {'id': '62', 'type': 'function_definition', 'children': ['63', '64', '71']}, {'id': '63', 'type': 'function_name', 'children': [], 'value': 'get'}; {'id': '64', 'type': 'parameters', 'children': ['65', '66', '67', '69']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '67', 'type': 'list_splat_pattern', 'children': ['68']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '69', 'type': 'dictionary_splat_pattern', 'children': ['70']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '71', 'type': 'block', 'children': ['72', '78', '86', '149']}; {'id': '72', 'type': 'expression_statement', 'children': ['73']}, {'id': '73', 'type': 'assignment', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'ret'}, {'id': '75', 'type': 'call', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'OrderedDict'}, {'id': '77', 'type': 'argument_list', 'children': []}; {'id': '78', 'type': 'expression_statement', 'children': ['79']}, {'id': '79', 'type': 'assignment', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'namespace'}, {'id': '81', 'type': 'attribute', 'children': ['82', '85']}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'resolver_match'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'namespace'}; {'id': '86', 'type': 'for_statement', 'children': ['87', '90', '104']}, {'id': '87', 'type': 'pattern_list', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'url_name'}; {'id': '90', 'type': 'call', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '92', 'type': 'argument_list', 'children': ['93', '98']}, {'id': '93', 'type': 'call', 'children': ['94', '97']}; {'id': '94', 'type': 'attribute', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'api_root_dict'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '97', 'type': 'argument_list', 'children': []}; {'id': '98', 'type': 'keyword_argument', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '100', 'type': 'call', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'itemgetter'}; {'id': '102', 'type': 'argument_list', 'children': ['103']}, {'id': '103', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '104', 'type': 'block', 'children': ['105', '116']}, {'id': '105', 'type': 'if_statement', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'namespace'}, {'id': '107', 'type': 'block', 'children': ['108']}; {'id': '108', 'type': 'expression_statement', 'children': ['109']}, {'id': '109', 'type': 'assignment', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'url_name'}, {'id': '111', 'type': 'binary_operator', 'children': ['112', '115'], 'value': '+'}; {'id': '112', 'type': 'binary_operator', 'children': ['113', '114'], 'value': '+'}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'namespace'}; {'id': '114', 'type': 'string', 'children': [], 'value': "':'"}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'url_name'}; {'id': '116', 'type': 'try_statement', 'children': ['117', '145']}, {'id': '117', 'type': 'block', 'children': ['118']}; {'id': '118', 'type': 'expression_statement', 'children': ['119']}, {'id': '119', 'type': 'assignment', 'children': ['120', '123']}; {'id': '120', 'type': 'subscript', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'ret'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '123', 'type': 'call', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'reverse'}, {'id': '125', 'type': 'argument_list', 'children': ['126', '127', '130', '133', '136']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'url_name'}, {'id': '127', 'type': 'keyword_argument', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '130', 'type': 'keyword_argument', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '133', 'type': 'keyword_argument', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'request'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '136', 'type': 'keyword_argument', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '138', 'type': 'call', 'children': ['139', '142']}, {'id': '139', 'type': 'attribute', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '142', 'type': 'argument_list', 'children': ['143', '144']}, {'id': '143', 'type': 'string', 'children': [], 'value': "'format'"}; {'id': '144', 'type': 'None', 'children': []}, {'id': '145', 'type': 'except_clause', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'NoReverseMatch'}, {'id': '147', 'type': 'block', 'children': ['148']}; {'id': '148', 'type': 'continue_statement', 'children': []}, {'id': '149', 'type': 'return_statement', 'children': ['150']}; {'id': '150', 'type': 'call', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'Response'}; {'id': '152', 'type': 'argument_list', 'children': ['153']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'ret'}; {'id': '154', 'type': 'return_statement', 'children': ['155']}, {'id': '155', 'type': 'call', 'children': ['156', '159']}; {'id': '156', 'type': 'attribute', 'children': ['157', '158']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'APIRootView'}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'as_view'}, {'id': '159', 'type': 'argument_list', 'children': []} | def get_api_root_view(self, api_urls=None):
api_root_dict = OrderedDict()
list_name = self.routes[0].name
for prefix, viewset, basename in self.registry:
api_root_dict[prefix] = list_name.format(basename=basename)
class APIRootView(views.APIView):
_ignore_model_permissions = True
exclude_from_schema = True
def get(self, request, *args, **kwargs):
ret = OrderedDict()
namespace = request.resolver_match.namespace
for key, url_name in sorted(api_root_dict.items(), key=itemgetter(0)):
if namespace:
url_name = namespace + ':' + url_name
try:
ret[key] = reverse(
url_name,
args=args,
kwargs=kwargs,
request=request,
format=kwargs.get('format', None)
)
except NoReverseMatch:
continue
return Response(ret)
return APIRootView.as_view() |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_default_base_name'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'viewset'}; {'id': '6', 'type': 'block', 'children': ['7', '16', '41']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'queryset'}; {'id': '10', 'type': 'call', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'getattr'}; {'id': '12', 'type': 'argument_list', 'children': ['13', '14', '15']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'viewset'}; {'id': '14', 'type': 'string', 'children': [], 'value': "'queryset'"}, {'id': '15', 'type': 'None', 'children': []}; {'id': '16', 'type': 'if_statement', 'children': ['17', '20']}, {'id': '17', 'type': 'comparison_operator', 'children': ['18', '19'], 'value': 'is'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'queryset'}, {'id': '19', 'type': 'None', 'children': []}; {'id': '20', 'type': 'block', 'children': ['21', '32']}, {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'get_url_name'}; {'id': '24', 'type': 'call', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'getattr'}; {'id': '26', 'type': 'argument_list', 'children': ['27', '30', '31']}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'queryset'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'model'}; {'id': '30', 'type': 'string', 'children': [], 'value': "'get_url_name'"}, {'id': '31', 'type': 'None', 'children': []}; {'id': '32', 'type': 'if_statement', 'children': ['33', '36']}, {'id': '33', 'type': 'comparison_operator', 'children': ['34', '35'], 'value': 'is'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'get_url_name'}, {'id': '35', 'type': 'None', 'children': []}; {'id': '36', 'type': 'block', 'children': ['37']}, {'id': '37', 'type': 'return_statement', 'children': ['38']}; {'id': '38', 'type': 'call', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'get_url_name'}; {'id': '40', 'type': 'argument_list', 'children': []}, {'id': '41', 'type': 'return_statement', 'children': ['42']}; {'id': '42', 'type': 'call', 'children': ['43', '50']}, {'id': '43', 'type': 'attribute', 'children': ['44', '49']}; {'id': '44', 'type': 'call', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'super'}; {'id': '46', 'type': 'argument_list', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'SortedDefaultRouter'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'get_default_base_name'}; {'id': '50', 'type': 'argument_list', 'children': ['51']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'viewset'} | def get_default_base_name(self, viewset):
queryset = getattr(viewset, 'queryset', None)
if queryset is not None:
get_url_name = getattr(queryset.model, 'get_url_name', None)
if get_url_name is not None:
return get_url_name()
return super(SortedDefaultRouter, self).get_default_base_name(viewset) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_dict'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'd'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'desc'}, {'id': '7', 'type': 'True', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9', '31']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '12', 'type': 'call', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '14', 'type': 'argument_list', 'children': ['15', '20', '28']}, {'id': '15', 'type': 'call', 'children': ['16', '19']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '19', 'type': 'argument_list', 'children': []}; {'id': '20', 'type': 'keyword_argument', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '22', 'type': 'lambda', 'children': ['23', '25']}, {'id': '23', 'type': 'lambda_parameters', 'children': ['24']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '25', 'type': 'subscript', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '27', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '28', 'type': 'keyword_argument', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'reverse'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'desc'}, {'id': '31', 'type': 'return_statement', 'children': ['32']}; {'id': '32', 'type': 'call', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'OrderedDict'}; {'id': '34', 'type': 'argument_list', 'children': ['35']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'sort'} | def sort_dict(d, desc=True):
sort = sorted(d.items(), key=lambda x: x[1], reverse=desc)
return OrderedDict(sort) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '23']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_tupleCompare'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '17', '20']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'tuple1'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'ineq'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'tuple2'}, {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'eq'}, {'id': '9', 'type': 'lambda', 'children': ['10', '13']}; {'id': '10', 'type': 'lambda_parameters', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'a'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'b'}, {'id': '13', 'type': 'parenthesized_expression', 'children': ['14']}; {'id': '14', 'type': 'comparison_operator', 'children': ['15', '16'], 'value': '=='}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'a'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'b'}, {'id': '17', 'type': 'default_parameter', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'ander'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'AND'}; {'id': '20', 'type': 'default_parameter', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'orer'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'OR'}, {'id': '23', 'type': 'block', 'children': ['24', '28', '87']}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}, {'id': '25', 'type': 'assignment', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'orholder'}, {'id': '27', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '28', 'type': 'for_statement', 'children': ['29', '30', '37']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'limit'}; {'id': '30', 'type': 'call', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '32', 'type': 'argument_list', 'children': ['33']}, {'id': '33', 'type': 'call', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '35', 'type': 'argument_list', 'children': ['36']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'tuple1'}, {'id': '37', 'type': 'block', 'children': ['38', '60', '72']}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}, {'id': '39', 'type': 'assignment', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'eqconstraint'}, {'id': '41', 'type': 'list_comprehension', 'children': ['42', '47']}; {'id': '42', 'type': 'call', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'eq'}; {'id': '44', 'type': 'argument_list', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'elem1'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'elem2'}, {'id': '47', 'type': 'for_in_clause', 'children': ['48', '51']}; {'id': '48', 'type': 'pattern_list', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'elem1'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'elem2'}, {'id': '51', 'type': 'subscript', 'children': ['52', '57']}; {'id': '52', 'type': 'call', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'zip'}; {'id': '54', 'type': 'argument_list', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'tuple1'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'tuple2'}, {'id': '57', 'type': 'slice', 'children': ['58', '59']}; {'id': '58', 'type': 'colon', 'children': []}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'limit'}; {'id': '60', 'type': 'expression_statement', 'children': ['61']}, {'id': '61', 'type': 'assignment', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'ineqconstraint'}, {'id': '63', 'type': 'call', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'ineq'}, {'id': '65', 'type': 'argument_list', 'children': ['66', '69']}; {'id': '66', 'type': 'subscript', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'tuple1'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'limit'}, {'id': '69', 'type': 'subscript', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'tuple2'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'limit'}; {'id': '72', 'type': 'expression_statement', 'children': ['73']}, {'id': '73', 'type': 'call', 'children': ['74', '77']}; {'id': '74', 'type': 'attribute', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'orholder'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '77', 'type': 'argument_list', 'children': ['78']}; {'id': '78', 'type': 'call', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'ander'}; {'id': '80', 'type': 'argument_list', 'children': ['81']}, {'id': '81', 'type': 'list_splat', 'children': ['82']}; {'id': '82', 'type': 'parenthesized_expression', 'children': ['83']}, {'id': '83', 'type': 'binary_operator', 'children': ['84', '85'], 'value': '+'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'eqconstraint'}, {'id': '85', 'type': 'list', 'children': ['86'], 'value': '[ineqconstraint]'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'ineqconstraint'}, {'id': '87', 'type': 'return_statement', 'children': ['88']}; {'id': '88', 'type': 'call', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'orer'}; {'id': '90', 'type': 'argument_list', 'children': ['91']}, {'id': '91', 'type': 'list_splat', 'children': ['92']} | def _tupleCompare(tuple1, ineq, tuple2,
eq=lambda a,b: (a==b),
ander=AND,
orer=OR):
orholder = []
for limit in range(len(tuple1)):
eqconstraint = [
eq(elem1, elem2) for elem1, elem2 in zip(tuple1, tuple2)[:limit]]
ineqconstraint = ineq(tuple1[limit], tuple2[limit])
orholder.append(ander(*(eqconstraint + [ineqconstraint])))
return orer(*orholder) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_datasets'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'query'}, {'id': '7', 'type': 'string', 'children': [], 'value': "'*:*'"}; {'id': '8', 'type': 'dictionary_splat_pattern', 'children': ['9']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '10', 'type': 'block', 'children': ['11']}, {'id': '11', 'type': 'return_statement', 'children': ['12']}; {'id': '12', 'type': 'call', 'children': ['13', '22']}, {'id': '13', 'type': 'attribute', 'children': ['14', '21']}; {'id': '14', 'type': 'attribute', 'children': ['15', '20']}, {'id': '15', 'type': 'attribute', 'children': ['16', '19']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'hdx'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'dataset'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'Dataset'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'search_in_hdx'}; {'id': '22', 'type': 'argument_list', 'children': ['23', '26', '31', '40']}, {'id': '23', 'type': 'keyword_argument', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'query'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'query'}; {'id': '26', 'type': 'keyword_argument', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'configuration'}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'configuration'}, {'id': '31', 'type': 'keyword_argument', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'fq'}, {'id': '33', 'type': 'binary_operator', 'children': ['34', '35'], 'value': '%'}; {'id': '34', 'type': 'string', 'children': [], 'value': "'organization:%s'"}, {'id': '35', 'type': 'subscript', 'children': ['36', '39']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '39', 'type': 'string', 'children': [], 'value': "'name'"}; {'id': '40', 'type': 'dictionary_splat', 'children': ['41']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'kwargs'} | def get_datasets(self, query='*:*', **kwargs):
return hdx.data.dataset.Dataset.search_in_hdx(query=query,
configuration=self.configuration,
fq='organization:%s' % self.data['name'], **kwargs) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_all_organization_names'}, {'id': '3', 'type': 'parameters', 'children': ['4', '7']}; {'id': '4', 'type': 'default_parameter', 'children': ['5', '6']}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'configuration'}; {'id': '6', 'type': 'None', 'children': []}, {'id': '7', 'type': 'dictionary_splat_pattern', 'children': ['8']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '9', 'type': 'block', 'children': ['10', '19', '25']}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}, {'id': '11', 'type': 'assignment', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'organization'}, {'id': '13', 'type': 'call', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'Organization'}, {'id': '15', 'type': 'argument_list', 'children': ['16']}; {'id': '16', 'type': 'keyword_argument', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'configuration'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'configuration'}, {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '24']}, {'id': '21', 'type': 'subscript', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'organization'}, {'id': '23', 'type': 'string', 'children': [], 'value': "'id'"}; {'id': '24', 'type': 'string', 'children': [], 'value': "'all organizations'"}, {'id': '25', 'type': 'return_statement', 'children': ['26']}; {'id': '26', 'type': 'call', 'children': ['27', '30']}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'organization'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': '_write_to_hdx'}; {'id': '30', 'type': 'argument_list', 'children': ['31', '32', '33']}, {'id': '31', 'type': 'string', 'children': [], 'value': "'list'"}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '33', 'type': 'string', 'children': [], 'value': "'id'"} | def get_all_organization_names(configuration=None, **kwargs):
organization = Organization(configuration=configuration)
organization['id'] = 'all organizations'
return organization._write_to_hdx('list', kwargs, 'id') |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '16']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'search_in_hdx'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'query'}, {'id': '7', 'type': 'string', 'children': [], 'value': "'*:*'"}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'configuration'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'page_size'}, {'id': '13', 'type': 'integer', 'children': [], 'value': '1000'}; {'id': '14', 'type': 'dictionary_splat_pattern', 'children': ['15']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '16', 'type': 'block', 'children': ['17', '26', '38', '48', '52', '56', '300', '316']}, {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'assignment', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'dataset'}; {'id': '20', 'type': 'call', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'Dataset'}; {'id': '22', 'type': 'argument_list', 'children': ['23']}, {'id': '23', 'type': 'keyword_argument', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'configuration'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'configuration'}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}, {'id': '27', 'type': 'assignment', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'total_rows'}, {'id': '29', 'type': 'call', 'children': ['30', '33']}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '33', 'type': 'argument_list', 'children': ['34', '35']}; {'id': '34', 'type': 'string', 'children': [], 'value': "'rows'"}, {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'max_int'}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}, {'id': '39', 'type': 'assignment', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'start'}, {'id': '41', 'type': 'call', 'children': ['42', '45']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '45', 'type': 'argument_list', 'children': ['46', '47']}; {'id': '46', 'type': 'string', 'children': [], 'value': "'start'"}, {'id': '47', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '48', 'type': 'expression_statement', 'children': ['49']}, {'id': '49', 'type': 'assignment', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'all_datasets'}, {'id': '51', 'type': 'None', 'children': []}; {'id': '52', 'type': 'expression_statement', 'children': ['53']}, {'id': '53', 'type': 'assignment', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'attempts'}, {'id': '55', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '56', 'type': 'while_statement', 'children': ['57', '66']}, {'id': '57', 'type': 'boolean_operator', 'children': ['58', '63'], 'value': 'and'}; {'id': '58', 'type': 'comparison_operator', 'children': ['59', '60'], 'value': '<'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'attempts'}; {'id': '60', 'type': 'attribute', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'max_attempts'}, {'id': '63', 'type': 'comparison_operator', 'children': ['64', '65'], 'value': 'is'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'all_datasets'}, {'id': '65', 'type': 'None', 'children': []}; {'id': '66', 'type': 'block', 'children': ['67', '73', '79', '248']}, {'id': '67', 'type': 'expression_statement', 'children': ['68']}; {'id': '68', 'type': 'assignment', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'all_datasets'}; {'id': '70', 'type': 'call', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '72', 'type': 'argument_list', 'children': []}, {'id': '73', 'type': 'expression_statement', 'children': ['74']}; {'id': '74', 'type': 'assignment', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'counts'}; {'id': '76', 'type': 'call', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '78', 'type': 'argument_list', 'children': []}, {'id': '79', 'type': 'for_statement', 'children': ['80', '81', '89']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'page'}, {'id': '81', 'type': 'call', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'range'}, {'id': '83', 'type': 'argument_list', 'children': ['84']}; {'id': '84', 'type': 'binary_operator', 'children': ['85', '88'], 'value': '+'}, {'id': '85', 'type': 'binary_operator', 'children': ['86', '87'], 'value': '//'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'total_rows'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'page_size'}; {'id': '88', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '89', 'type': 'block', 'children': ['90', '96', '104', '110', '118', '124', '146', '152']}; {'id': '90', 'type': 'expression_statement', 'children': ['91']}, {'id': '91', 'type': 'assignment', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'pagetimespagesize'}, {'id': '93', 'type': 'binary_operator', 'children': ['94', '95'], 'value': '*'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'page'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'page_size'}; {'id': '96', 'type': 'expression_statement', 'children': ['97']}, {'id': '97', 'type': 'assignment', 'children': ['98', '101']}; {'id': '98', 'type': 'subscript', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '100', 'type': 'string', 'children': [], 'value': "'start'"}, {'id': '101', 'type': 'binary_operator', 'children': ['102', '103'], 'value': '+'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'start'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'pagetimespagesize'}; {'id': '104', 'type': 'expression_statement', 'children': ['105']}, {'id': '105', 'type': 'assignment', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'rows_left'}, {'id': '107', 'type': 'binary_operator', 'children': ['108', '109'], 'value': '-'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'total_rows'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'pagetimespagesize'}; {'id': '110', 'type': 'expression_statement', 'children': ['111']}, {'id': '111', 'type': 'assignment', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'rows'}, {'id': '113', 'type': 'call', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'min'}, {'id': '115', 'type': 'argument_list', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'rows_left'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'page_size'}; {'id': '118', 'type': 'expression_statement', 'children': ['119']}, {'id': '119', 'type': 'assignment', 'children': ['120', '123']}; {'id': '120', 'type': 'subscript', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '122', 'type': 'string', 'children': [], 'value': "'rows'"}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'rows'}; {'id': '124', 'type': 'expression_statement', 'children': ['125']}, {'id': '125', 'type': 'assignment', 'children': ['126', '129']}; {'id': '126', 'type': 'pattern_list', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '129', 'type': 'call', 'children': ['130', '133']}; {'id': '130', 'type': 'attribute', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'dataset'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': '_read_from_hdx'}, {'id': '133', 'type': 'argument_list', 'children': ['134', '135', '136', '137', '144']}; {'id': '134', 'type': 'string', 'children': [], 'value': "'dataset'"}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'query'}; {'id': '136', 'type': 'string', 'children': [], 'value': "'q'"}, {'id': '137', 'type': 'subscript', 'children': ['138', '143']}; {'id': '138', 'type': 'call', 'children': ['139', '142']}, {'id': '139', 'type': 'attribute', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'Dataset'}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'actions'}; {'id': '142', 'type': 'argument_list', 'children': []}, {'id': '143', 'type': 'string', 'children': [], 'value': "'search'"}; {'id': '144', 'type': 'dictionary_splat', 'children': ['145']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '146', 'type': 'expression_statement', 'children': ['147']}, {'id': '147', 'type': 'assignment', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'datasets'}, {'id': '149', 'type': 'call', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '151', 'type': 'argument_list', 'children': []}; {'id': '152', 'type': 'if_statement', 'children': ['153', '154', '239']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '154', 'type': 'block', 'children': ['155', '165']}, {'id': '155', 'type': 'expression_statement', 'children': ['156']}; {'id': '156', 'type': 'assignment', 'children': ['157', '158']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'count'}; {'id': '158', 'type': 'call', 'children': ['159', '162']}, {'id': '159', 'type': 'attribute', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '162', 'type': 'argument_list', 'children': ['163', '164']}, {'id': '163', 'type': 'string', 'children': [], 'value': "'count'"}; {'id': '164', 'type': 'None', 'children': []}, {'id': '165', 'type': 'if_statement', 'children': ['166', '167', '236']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'count'}, {'id': '167', 'type': 'block', 'children': ['168', '175', '184', '226', '230']}; {'id': '168', 'type': 'expression_statement', 'children': ['169']}, {'id': '169', 'type': 'call', 'children': ['170', '173']}; {'id': '170', 'type': 'attribute', 'children': ['171', '172']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'counts'}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'add'}, {'id': '173', 'type': 'argument_list', 'children': ['174']}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'count'}, {'id': '175', 'type': 'expression_statement', 'children': ['176']}; {'id': '176', 'type': 'assignment', 'children': ['177', '178']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'no_results'}; {'id': '178', 'type': 'call', 'children': ['179', '180']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '180', 'type': 'argument_list', 'children': ['181']}, {'id': '181', 'type': 'subscript', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '183', 'type': 'string', 'children': [], 'value': "'results'"}; {'id': '184', 'type': 'for_statement', 'children': ['185', '186', '189']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'datasetdict'}; {'id': '186', 'type': 'subscript', 'children': ['187', '188']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '188', 'type': 'string', 'children': [], 'value': "'results'"}, {'id': '189', 'type': 'block', 'children': ['190', '199', '207', '213', '219']}; {'id': '190', 'type': 'expression_statement', 'children': ['191']}, {'id': '191', 'type': 'assignment', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'dataset'}, {'id': '193', 'type': 'call', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'Dataset'}, {'id': '195', 'type': 'argument_list', 'children': ['196']}; {'id': '196', 'type': 'keyword_argument', 'children': ['197', '198']}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'configuration'}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'configuration'}, {'id': '199', 'type': 'expression_statement', 'children': ['200']}; {'id': '200', 'type': 'assignment', 'children': ['201', '204']}, {'id': '201', 'type': 'attribute', 'children': ['202', '203']}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'dataset'}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'old_data'}; {'id': '204', 'type': 'call', 'children': ['205', '206']}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'dict'}; {'id': '206', 'type': 'argument_list', 'children': []}, {'id': '207', 'type': 'expression_statement', 'children': ['208']}; {'id': '208', 'type': 'assignment', 'children': ['209', '212']}, {'id': '209', 'type': 'attribute', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'dataset'}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'datasetdict'}, {'id': '213', 'type': 'expression_statement', 'children': ['214']}; {'id': '214', 'type': 'call', 'children': ['215', '218']}, {'id': '215', 'type': 'attribute', 'children': ['216', '217']}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'dataset'}, {'id': '217', 'type': 'identifier', 'children': [], 'value': '_dataset_create_resources'}; {'id': '218', 'type': 'argument_list', 'children': []}, {'id': '219', 'type': 'expression_statement', 'children': ['220']}; {'id': '220', 'type': 'call', 'children': ['221', '224']}, {'id': '221', 'type': 'attribute', 'children': ['222', '223']}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'datasets'}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '224', 'type': 'argument_list', 'children': ['225']}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'dataset'}; {'id': '226', 'type': 'expression_statement', 'children': ['227']}, {'id': '227', 'type': 'augmented_assignment', 'children': ['228', '229'], 'value': '+='}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'all_datasets'}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'datasets'}; {'id': '230', 'type': 'if_statement', 'children': ['231', '234']}, {'id': '231', 'type': 'comparison_operator', 'children': ['232', '233'], 'value': '<'}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'no_results'}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'rows'}; 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{'id': '266', 'type': 'else_clause', 'children': ['267']}, {'id': '267', 'type': 'block', 'children': ['268', '278']}; {'id': '268', 'type': 'expression_statement', 'children': ['269']}, {'id': '269', 'type': 'assignment', 'children': ['270', '271']}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'ids'}, {'id': '271', 'type': 'list_comprehension', 'children': ['272', '275']}; {'id': '272', 'type': 'subscript', 'children': ['273', '274']}, {'id': '273', 'type': 'identifier', 'children': [], 'value': 'dataset'}; {'id': '274', 'type': 'string', 'children': [], 'value': "'id'"}, {'id': '275', 'type': 'for_in_clause', 'children': ['276', '277']}; {'id': '276', 'type': 'identifier', 'children': [], 'value': 'dataset'}, {'id': '277', 'type': 'identifier', 'children': [], 'value': 'all_datasets'}; {'id': '278', 'type': 'if_statement', 'children': ['279', '291']}, {'id': '279', 'type': 'comparison_operator', 'children': ['280', '284'], 'value': '!='}; {'id': '280', 'type': 'call', 'children': ['281', '282']}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'len'}; 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{'id': '298', 'type': 'identifier', 'children': [], 'value': 'attempts'}, {'id': '299', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '300', 'type': 'if_statement', 'children': ['301', '310']}, {'id': '301', 'type': 'boolean_operator', 'children': ['302', '307'], 'value': 'and'}; {'id': '302', 'type': 'comparison_operator', 'children': ['303', '304'], 'value': '=='}, {'id': '303', 'type': 'identifier', 'children': [], 'value': 'attempts'}; {'id': '304', 'type': 'attribute', 'children': ['305', '306']}, {'id': '305', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '306', 'type': 'identifier', 'children': [], 'value': 'max_attempts'}, {'id': '307', 'type': 'comparison_operator', 'children': ['308', '309'], 'value': 'is'}; {'id': '308', 'type': 'identifier', 'children': [], 'value': 'all_datasets'}, {'id': '309', 'type': 'None', 'children': []}; {'id': '310', 'type': 'block', 'children': ['311']}, {'id': '311', 'type': 'raise_statement', 'children': ['312']}; {'id': '312', 'type': 'call', 'children': ['313', '314']}, {'id': '313', 'type': 'identifier', 'children': [], 'value': 'HDXError'}; {'id': '314', 'type': 'argument_list', 'children': ['315']}, {'id': '315', 'type': 'string', 'children': [], 'value': "'Maximum attempts reached for searching for datasets!'"}; {'id': '316', 'type': 'return_statement', 'children': ['317']}, {'id': '317', 'type': 'identifier', 'children': [], 'value': 'all_datasets'} | def search_in_hdx(cls, query='*:*', configuration=None, page_size=1000, **kwargs):
dataset = Dataset(configuration=configuration)
total_rows = kwargs.get('rows', cls.max_int)
start = kwargs.get('start', 0)
all_datasets = None
attempts = 0
while attempts < cls.max_attempts and all_datasets is None:
all_datasets = list()
counts = set()
for page in range(total_rows // page_size + 1):
pagetimespagesize = page * page_size
kwargs['start'] = start + pagetimespagesize
rows_left = total_rows - pagetimespagesize
rows = min(rows_left, page_size)
kwargs['rows'] = rows
_, result = dataset._read_from_hdx('dataset', query, 'q', Dataset.actions()['search'], **kwargs)
datasets = list()
if result:
count = result.get('count', None)
if count:
counts.add(count)
no_results = len(result['results'])
for datasetdict in result['results']:
dataset = Dataset(configuration=configuration)
dataset.old_data = dict()
dataset.data = datasetdict
dataset._dataset_create_resources()
datasets.append(dataset)
all_datasets += datasets
if no_results < rows:
break
else:
break
else:
logger.debug(result)
if all_datasets and len(counts) != 1:
all_datasets = None
attempts += 1
else:
ids = [dataset['id'] for dataset in all_datasets]
if len(ids) != len(set(ids)):
all_datasets = None
attempts += 1
if attempts == cls.max_attempts and all_datasets is None:
raise HDXError('Maximum attempts reached for searching for datasets!')
return all_datasets |
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{'id': '64', 'type': 'block', 'children': ['65', '72']}, {'id': '65', 'type': 'expression_statement', 'children': ['66']}; {'id': '66', 'type': 'assignment', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'duplicates'}; {'id': '68', 'type': 'call', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'find_duplicates'}; {'id': '70', 'type': 'argument_list', 'children': ['71']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '72', 'type': 'raise_statement', 'children': ['73']}, {'id': '73', 'type': 'call', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '75', 'type': 'argument_list', 'children': ['76']}; {'id': '76', 'type': 'call', 'children': ['77', '80']}, {'id': '77', 'type': 'attribute', 'children': ['78', '79']}; {'id': '78', 'type': 'string', 'children': [], 'value': '"There are duplicates in the values: {}"'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '80', 'type': 'argument_list', 'children': ['81']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'duplicates'}; {'id': '82', 'type': 'expression_statement', 'children': ['83']}, {'id': '83', 'type': 'assignment', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '85', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '86', 'type': 'else_clause', 'children': ['87']}, {'id': '87', 'type': 'block', 'children': ['88']}; {'id': '88', 'type': 'raise_statement', 'children': ['89']}, {'id': '89', 'type': 'call', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '91', 'type': 'argument_list', 'children': ['92']}; {'id': '92', 'type': 'string', 'children': [], 'value': '"by can be \'key\' or \'value\'."'}, {'id': '93', 'type': 'return_statement', 'children': ['94']}; {'id': '94', 'type': 'call', 'children': ['95', '98']}, {'id': '95', 'type': 'attribute', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'collections'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'OrderedDict'}; {'id': '98', 'type': 'argument_list', 'children': ['99']}, {'id': '99', 'type': 'call', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '101', 'type': 'argument_list', 'children': ['102', '107']}; {'id': '102', 'type': 'call', 'children': ['103', '106']}, {'id': '103', 'type': 'attribute', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'd'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '106', 'type': 'argument_list', 'children': []}, {'id': '107', 'type': 'keyword_argument', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '109', 'type': 'lambda', 'children': ['110', '112']}; {'id': '110', 'type': 'lambda_parameters', 'children': ['111']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 't'}; {'id': '112', 'type': 'subscript', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 't'} | def sort_dict(d: dict, by: str = 'key',
allow_duplicates: bool = True) -> collections.OrderedDict:
if by == 'key':
i = 0
elif by == 'value':
values = list(d.values())
if len(values) != len(set(values)) and not allow_duplicates:
duplicates = find_duplicates(values)
raise ValueError("There are duplicates in the values: {}".format(duplicates))
i = 1
else:
raise ValueError("by can be 'key' or 'value'.")
return collections.OrderedDict(sorted(d.items(), key=lambda t: t[i])) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_all_users'}, {'id': '3', 'type': 'parameters', 'children': ['4', '7']}; {'id': '4', 'type': 'default_parameter', 'children': ['5', '6']}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'configuration'}; {'id': '6', 'type': 'None', 'children': []}, {'id': '7', 'type': 'dictionary_splat_pattern', 'children': ['8']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '9', 'type': 'block', 'children': ['10', '19', '25', '36', '42', '75']}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}, {'id': '11', 'type': 'assignment', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '13', 'type': 'call', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'User'}, {'id': '15', 'type': 'argument_list', 'children': ['16']}; {'id': '16', 'type': 'keyword_argument', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'configuration'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'configuration'}, {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '24']}, {'id': '21', 'type': 'subscript', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '23', 'type': 'string', 'children': [], 'value': "'id'"}; {'id': '24', 'type': 'string', 'children': [], 'value': "'all users'"}, {'id': '25', 'type': 'expression_statement', 'children': ['26']}; {'id': '26', 'type': 'assignment', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '28', 'type': 'call', 'children': ['29', '32']}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'user'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': '_write_to_hdx'}; {'id': '32', 'type': 'argument_list', 'children': ['33', '34', '35']}, {'id': '33', 'type': 'string', 'children': [], 'value': "'list'"}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '35', 'type': 'string', 'children': [], 'value': "'id'"}; {'id': '36', 'type': 'expression_statement', 'children': ['37']}, {'id': '37', 'type': 'assignment', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'users'}, {'id': '39', 'type': 'call', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '41', 'type': 'argument_list', 'children': []}; {'id': '42', 'type': 'if_statement', 'children': ['43', '44', '66']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '44', 'type': 'block', 'children': ['45']}, {'id': '45', 'type': 'for_statement', 'children': ['46', '47', '48']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'userdict'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'result'}; {'id': '48', 'type': 'block', 'children': ['49', '59']}, {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'assignment', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '52', 'type': 'call', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'User'}; {'id': '54', 'type': 'argument_list', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'userdict'}; {'id': '56', 'type': 'keyword_argument', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'configuration'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'configuration'}, {'id': '59', 'type': 'expression_statement', 'children': ['60']}; {'id': '60', 'type': 'call', 'children': ['61', '64']}, {'id': '61', 'type': 'attribute', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'users'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '64', 'type': 'argument_list', 'children': ['65']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'user'}; {'id': '66', 'type': 'else_clause', 'children': ['67']}, {'id': '67', 'type': 'block', 'children': ['68']}; {'id': '68', 'type': 'expression_statement', 'children': ['69']}, {'id': '69', 'type': 'call', 'children': ['70', '73']}; {'id': '70', 'type': 'attribute', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'logger'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'debug'}, {'id': '73', 'type': 'argument_list', 'children': ['74']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'result'}, {'id': '75', 'type': 'return_statement', 'children': ['76']} | def get_all_users(configuration=None, **kwargs):
user = User(configuration=configuration)
user['id'] = 'all users'
result = user._write_to_hdx('list', kwargs, 'id')
users = list()
if result:
for userdict in result:
user = User(userdict, configuration=configuration)
users.append(user)
else:
logger.debug(result)
return users |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'fromkeys'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'iterable'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '8', 'type': 'None', 'children': []}, {'id': '9', 'type': 'block', 'children': ['10', '28']}; {'id': '10', 'type': 'if_statement', 'children': ['11', '16']}, {'id': '11', 'type': 'not_operator', 'children': ['12']}; {'id': '12', 'type': 'call', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'callable'}; {'id': '14', 'type': 'argument_list', 'children': ['15']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '16', 'type': 'block', 'children': ['17']}, {'id': '17', 'type': 'return_statement', 'children': ['18']}; {'id': '18', 'type': 'call', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '20', 'type': 'argument_list', 'children': ['21']}, {'id': '21', 'type': 'call', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'dict'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'fromkeys'}, {'id': '25', 'type': 'argument_list', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'iterable'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '28', 'type': 'return_statement', 'children': ['29']}, {'id': '29', 'type': 'call', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '31', 'type': 'generator_expression', 'children': ['32', '38']}; {'id': '32', 'type': 'tuple', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '34', 'type': 'call', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'value'}; {'id': '36', 'type': 'argument_list', 'children': ['37']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '38', 'type': 'for_in_clause', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'key'} | def fromkeys(cls, iterable, value=None):
if not callable(value):
return cls(dict.fromkeys(iterable, value))
return cls((key, value(key)) for key in iterable) |
Subsets and Splits