sequence
stringlengths 1.19k
35k
| code
stringlengths 75
8.58k
|
|---|---|
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_keys'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'data_list'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'leading_columns'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'LEADING_COLUMNS'}; {'id': '8', 'type': 'block', 'children': ['9', '32', '36', '60']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'all_keys'}; {'id': '12', 'type': 'call', 'children': ['13', '18']}, {'id': '13', 'type': 'attribute', 'children': ['14', '17']}; {'id': '14', 'type': 'call', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'set'}; {'id': '16', 'type': 'argument_list', 'children': []}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'union'}; {'id': '18', 'type': 'argument_list', 'children': ['19']}, {'id': '19', 'type': 'list_splat', 'children': ['20']}; {'id': '20', 'type': 'generator_expression', 'children': ['21', '29']}, {'id': '21', 'type': 'call', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '23', 'type': 'argument_list', 'children': ['24']}; {'id': '24', 'type': 'call', 'children': ['25', '28']}, {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'd'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '28', 'type': 'argument_list', 'children': []}, {'id': '29', 'type': 'for_in_clause', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'd'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'data_list'}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}, {'id': '33', 'type': 'assignment', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'leading_keys'}, {'id': '35', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '36', 'type': 'for_statement', 'children': ['37', '38', '39']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'leading_columns'}, {'id': '39', 'type': 'block', 'children': ['40', '46', '53']}; {'id': '40', 'type': 'if_statement', 'children': ['41', '44']}, {'id': '41', 'type': 'comparison_operator', 'children': ['42', '43'], 'value': 'not'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'all_keys'}; {'id': '44', 'type': 'block', 'children': ['45']}, {'id': '45', 'type': 'continue_statement', 'children': []}; {'id': '46', 'type': 'expression_statement', 'children': ['47']}, {'id': '47', 'type': 'call', 'children': ['48', '51']}; {'id': '48', 'type': 'attribute', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'leading_keys'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '51', 'type': 'argument_list', 'children': ['52']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '53', 'type': 'expression_statement', 'children': ['54']}; {'id': '54', 'type': 'call', 'children': ['55', '58']}, {'id': '55', 'type': 'attribute', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'all_keys'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'remove'}; {'id': '58', 'type': 'argument_list', 'children': ['59']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '60', 'type': 'return_statement', 'children': ['61']}, {'id': '61', 'type': 'binary_operator', 'children': ['62', '63'], 'value': '+'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'leading_keys'}, {'id': '63', 'type': 'call', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '65', 'type': 'argument_list', 'children': ['66']} | def get_keys(data_list, leading_columns=LEADING_COLUMNS):
all_keys = set().union(*(list(d.keys()) for d in data_list))
leading_keys = []
for key in leading_columns:
if key not in all_keys:
continue
leading_keys.append(key)
all_keys.remove(key)
return leading_keys + sorted(all_keys) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '15']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'to_file'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '8', 'type': 'True', 'children': []}, {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'relativize'}, {'id': '11', 'type': 'True', 'children': []}; {'id': '12', 'type': 'default_parameter', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'nl'}; {'id': '14', 'type': 'None', 'children': []}, {'id': '15', 'type': 'block', 'children': ['16', '33', '48', '73']}; {'id': '16', 'type': 'if_statement', 'children': ['17', '22', '27']}, {'id': '17', 'type': 'comparison_operator', 'children': ['18', '21'], 'value': '>='}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'hexversion'}, {'id': '21', 'type': 'integer', 'children': [], 'value': '0x02030000'}; {'id': '22', 'type': 'block', 'children': ['23']}, {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'str_type'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'basestring'}, {'id': '27', 'type': 'else_clause', 'children': ['28']}; {'id': '28', 'type': 'block', 'children': ['29']}, {'id': '29', 'type': 'expression_statement', 'children': ['30']}; {'id': '30', 'type': 'assignment', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'str_type'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '33', 'type': 'if_statement', 'children': ['34', '37', '42']}; {'id': '34', 'type': 'comparison_operator', 'children': ['35', '36'], 'value': 'is'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'nl'}; {'id': '36', 'type': 'None', 'children': []}, {'id': '37', 'type': 'block', 'children': ['38']}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}, {'id': '39', 'type': 'assignment', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'opts'}, {'id': '41', 'type': 'string', 'children': [], 'value': "'w'"}; {'id': '42', 'type': 'else_clause', 'children': ['43']}, {'id': '43', 'type': 'block', 'children': ['44']}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}, {'id': '45', 'type': 'assignment', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'opts'}, {'id': '47', 'type': 'string', 'children': [], 'value': "'wb'"}; {'id': '48', 'type': 'if_statement', 'children': ['49', '54', '67']}, {'id': '49', 'type': 'call', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '51', 'type': 'argument_list', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'str_type'}; {'id': '54', 'type': 'block', 'children': ['55', '63']}, {'id': '55', 'type': 'expression_statement', 'children': ['56']}; {'id': '56', 'type': 'assignment', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '58', 'type': 'call', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '60', 'type': 'argument_list', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'opts'}, {'id': '63', 'type': 'expression_statement', 'children': ['64']}; {'id': '64', 'type': 'assignment', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'want_close'}; {'id': '66', 'type': 'True', 'children': []}, {'id': '67', 'type': 'else_clause', 'children': ['68']}; {'id': '68', 'type': 'block', 'children': ['69']}, {'id': '69', 'type': 'expression_statement', 'children': ['70']}; {'id': '70', 'type': 'assignment', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'want_close'}; {'id': '72', 'type': 'False', 'children': []}, {'id': '73', 'type': 'try_statement', 'children': ['74', '150']}; {'id': '74', 'type': 'block', 'children': ['75', '102']}, {'id': '75', 'type': 'if_statement', 'children': ['76', '77', '92']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '77', 'type': 'block', 'children': ['78', '86']}; {'id': '78', 'type': 'expression_statement', 'children': ['79']}, {'id': '79', 'type': 'assignment', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'names'}, {'id': '81', 'type': 'call', 'children': ['82', '85']}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'keys'}, {'id': '85', 'type': 'argument_list', 'children': []}; {'id': '86', 'type': 'expression_statement', 'children': ['87']}, {'id': '87', 'type': 'call', 'children': ['88', '91']}; {'id': '88', 'type': 'attribute', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'names'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '91', 'type': 'argument_list', 'children': []}; {'id': '92', 'type': 'else_clause', 'children': ['93']}, {'id': '93', 'type': 'block', 'children': ['94']}; {'id': '94', 'type': 'expression_statement', 'children': ['95']}, {'id': '95', 'type': 'assignment', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'names'}, {'id': '97', 'type': 'call', 'children': ['98', '101']}; {'id': '98', 'type': 'attribute', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'iterkeys'}, {'id': '101', 'type': 'argument_list', 'children': []}; {'id': '102', 'type': 'for_statement', 'children': ['103', '104', '105']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'names'}, {'id': '105', 'type': 'block', 'children': ['106', '125']}; {'id': '106', 'type': 'expression_statement', 'children': ['107']}, {'id': '107', 'type': 'assignment', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'l'}, {'id': '109', 'type': 'call', 'children': ['110', '115']}; {'id': '110', 'type': 'attribute', 'children': ['111', '114']}, {'id': '111', 'type': 'subscript', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'n'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'to_text'}, {'id': '115', 'type': 'argument_list', 'children': ['116', '117', '122']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'n'}, {'id': '117', 'type': 'keyword_argument', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'origin'}, {'id': '119', 'type': 'attribute', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'origin'}; {'id': '122', 'type': 'keyword_argument', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'relativize'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'relativize'}, {'id': '125', 'type': 'if_statement', 'children': ['126', '129', '134']}; {'id': '126', 'type': 'comparison_operator', 'children': ['127', '128'], 'value': 'is'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'nl'}; {'id': '128', 'type': 'None', 'children': []}, {'id': '129', 'type': 'block', 'children': ['130']}; {'id': '130', 'type': 'print_statement', 'children': ['131', '133']}, {'id': '131', 'type': 'chevron', 'children': ['132']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'l'}; {'id': '134', 'type': 'else_clause', 'children': ['135']}, {'id': '135', 'type': 'block', 'children': ['136', '143']}; {'id': '136', 'type': 'expression_statement', 'children': ['137']}, {'id': '137', 'type': 'call', 'children': ['138', '141']}; {'id': '138', 'type': 'attribute', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'write'}, {'id': '141', 'type': 'argument_list', 'children': ['142']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'l'}, {'id': '143', 'type': 'expression_statement', 'children': ['144']}; {'id': '144', 'type': 'call', 'children': ['145', '148']}, {'id': '145', 'type': 'attribute', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '148', 'type': 'argument_list', 'children': ['149']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'nl'}; {'id': '150', 'type': 'finally_clause', 'children': ['151']}, {'id': '151', 'type': 'block', 'children': ['152']}; {'id': '152', 'type': 'if_statement', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'want_close'}; {'id': '154', 'type': 'block', 'children': ['155']}, {'id': '155', 'type': 'expression_statement', 'children': ['156']}; {'id': '156', 'type': 'call', 'children': ['157', '160']}, {'id': '157', 'type': 'attribute', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'close'} | def to_file(self, f, sorted=True, relativize=True, nl=None):
if sys.hexversion >= 0x02030000:
str_type = basestring
else:
str_type = str
if nl is None:
opts = 'w'
else:
opts = 'wb'
if isinstance(f, str_type):
f = file(f, opts)
want_close = True
else:
want_close = False
try:
if sorted:
names = self.keys()
names.sort()
else:
names = self.iterkeys()
for n in names:
l = self[n].to_text(n, origin=self.origin,
relativize=relativize)
if nl is None:
print >> f, l
else:
f.write(l)
f.write(nl)
finally:
if want_close:
f.close() |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_sorted_keys'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '6', 'type': 'block', 'children': ['7', '11', '31', '76', '105', '125']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'sorted_keys'}; {'id': '10', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '11', 'type': 'if_statement', 'children': ['12', '23']}; {'id': '12', 'type': 'boolean_operator', 'children': ['13', '17'], 'value': 'and'}, {'id': '13', 'type': 'parenthesized_expression', 'children': ['14']}; {'id': '14', 'type': 'comparison_operator', 'children': ['15', '16'], 'value': 'in'}, {'id': '15', 'type': 'string', 'children': [], 'value': "'epoch'"}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'keys'}, {'id': '17', 'type': 'parenthesized_expression', 'children': ['18']}; {'id': '18', 'type': 'comparison_operator', 'children': ['19', '20'], 'value': 'not'}, {'id': '19', 'type': 'string', 'children': [], 'value': "'epoch'"}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'keys_ignored_'}, {'id': '23', 'type': 'block', 'children': ['24']}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}, {'id': '25', 'type': 'call', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'sorted_keys'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '29', 'type': 'argument_list', 'children': ['30']}; {'id': '30', 'type': 'string', 'children': [], 'value': "'epoch'"}, {'id': '31', 'type': 'for_statement', 'children': ['32', '33', '37']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '33', 'type': 'call', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '35', 'type': 'argument_list', 'children': ['36']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'keys'}, {'id': '37', 'type': 'block', 'children': ['38']}; {'id': '38', 'type': 'if_statement', 'children': ['39', '68']}, {'id': '39', 'type': 'not_operator', 'children': ['40']}; {'id': '40', 'type': 'parenthesized_expression', 'children': ['41']}, {'id': '41', 'type': 'boolean_operator', 'children': ['42', '62'], 'value': 'or'}; {'id': '42', 'type': 'boolean_operator', 'children': ['43', '56'], 'value': 'or'}, {'id': '43', 'type': 'boolean_operator', 'children': ['44', '50'], 'value': 'or'}; {'id': '44', 'type': 'parenthesized_expression', 'children': ['45']}, {'id': '45', 'type': 'comparison_operator', 'children': ['46', '47'], 'value': 'in'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '47', 'type': 'tuple', 'children': ['48', '49']}; {'id': '48', 'type': 'string', 'children': [], 'value': "'epoch'"}, {'id': '49', 'type': 'string', 'children': [], 'value': "'dur'"}; {'id': '50', 'type': 'parenthesized_expression', 'children': ['51']}, {'id': '51', 'type': 'comparison_operator', 'children': ['52', '53'], 'value': 'in'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '53', 'type': 'attribute', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'keys_ignored_'}; {'id': '56', 'type': 'call', 'children': ['57', '60']}, {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'endswith'}; {'id': '60', 'type': 'argument_list', 'children': ['61']}, {'id': '61', 'type': 'string', 'children': [], 'value': "'_best'"}; {'id': '62', 'type': 'call', 'children': ['63', '66']}, {'id': '63', 'type': 'attribute', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'startswith'}; {'id': '66', 'type': 'argument_list', 'children': ['67']}, {'id': '67', 'type': 'string', 'children': [], 'value': "'event_'"}; {'id': '68', 'type': 'block', 'children': ['69']}, {'id': '69', 'type': 'expression_statement', 'children': ['70']}; {'id': '70', 'type': 'call', 'children': ['71', '74']}, {'id': '71', 'type': 'attribute', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'sorted_keys'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '74', 'type': 'argument_list', 'children': ['75']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '76', 'type': 'for_statement', 'children': ['77', '78', '82']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '78', 'type': 'call', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '80', 'type': 'argument_list', 'children': ['81']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'keys'}; {'id': '82', 'type': 'block', 'children': ['83']}, {'id': '83', 'type': 'if_statement', 'children': ['84', '97']}; {'id': '84', 'type': 'boolean_operator', 'children': ['85', '91'], 'value': 'and'}, {'id': '85', 'type': 'call', 'children': ['86', '89']}; {'id': '86', 'type': 'attribute', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'startswith'}, {'id': '89', 'type': 'argument_list', 'children': ['90']}; {'id': '90', 'type': 'string', 'children': [], 'value': "'event_'"}, {'id': '91', 'type': 'parenthesized_expression', 'children': ['92']}; {'id': '92', 'type': 'comparison_operator', 'children': ['93', '94'], 'value': 'not'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '94', 'type': 'attribute', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'keys_ignored_'}, {'id': '97', 'type': 'block', 'children': ['98']}; {'id': '98', 'type': 'expression_statement', 'children': ['99']}, {'id': '99', 'type': 'call', 'children': ['100', '103']}; {'id': '100', 'type': 'attribute', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'sorted_keys'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '103', 'type': 'argument_list', 'children': ['104']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '105', 'type': 'if_statement', 'children': ['106', '117']}; {'id': '106', 'type': 'boolean_operator', 'children': ['107', '111'], 'value': 'and'}, {'id': '107', 'type': 'parenthesized_expression', 'children': ['108']}; {'id': '108', 'type': 'comparison_operator', 'children': ['109', '110'], 'value': 'in'}, {'id': '109', 'type': 'string', 'children': [], 'value': "'dur'"}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'keys'}, {'id': '111', 'type': 'parenthesized_expression', 'children': ['112']}; {'id': '112', 'type': 'comparison_operator', 'children': ['113', '114'], 'value': 'not'}, {'id': '113', 'type': 'string', 'children': [], 'value': "'dur'"}; {'id': '114', 'type': 'attribute', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'keys_ignored_'}, {'id': '117', 'type': 'block', 'children': ['118']}; {'id': '118', 'type': 'expression_statement', 'children': ['119']}, {'id': '119', 'type': 'call', 'children': ['120', '123']}; {'id': '120', 'type': 'attribute', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'sorted_keys'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '123', 'type': 'argument_list', 'children': ['124']}; {'id': '124', 'type': 'string', 'children': [], 'value': "'dur'"}, {'id': '125', 'type': 'return_statement', 'children': ['126']} | def _sorted_keys(self, keys):
sorted_keys = []
if ('epoch' in keys) and ('epoch' not in self.keys_ignored_):
sorted_keys.append('epoch')
for key in sorted(keys):
if not (
(key in ('epoch', 'dur')) or
(key in self.keys_ignored_) or
key.endswith('_best') or
key.startswith('event_')
):
sorted_keys.append(key)
for key in sorted(keys):
if key.startswith('event_') and (key not in self.keys_ignored_):
sorted_keys.append(key)
if ('dur' in keys) and ('dur' not in self.keys_ignored_):
sorted_keys.append('dur')
return sorted_keys |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_values'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'by'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'ascending'}; {'id': '8', 'type': 'True', 'children': []}, {'id': '9', 'type': 'block', 'children': ['10', '23', '42']}; {'id': '10', 'type': 'if_statement', 'children': ['11', '17']}, {'id': '11', 'type': 'not_operator', 'children': ['12']}; {'id': '12', 'type': 'call', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '14', 'type': 'argument_list', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'by'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '17', 'type': 'block', 'children': ['18']}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}, {'id': '19', 'type': 'assignment', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'by'}, {'id': '21', 'type': 'list', 'children': ['22'], 'value': '[by, ]'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'by'}, {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'by'}; {'id': '26', 'type': 'list_comprehension', 'children': ['27', '39']}, {'id': '27', 'type': 'conditional_expression', 'children': ['28', '32', '38'], 'value': 'if'}; {'id': '28', 'type': 'call', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'it'}; {'id': '30', 'type': 'argument_list', 'children': ['31']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'expr'}; {'id': '32', 'type': 'call', 'children': ['33', '36']}, {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'inspect'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'isfunction'}; {'id': '36', 'type': 'argument_list', 'children': ['37']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'it'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'it'}, {'id': '39', 'type': 'for_in_clause', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'it'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'by'}; {'id': '42', 'type': 'return_statement', 'children': ['43']}, {'id': '43', 'type': 'call', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'SortedCollectionExpr'}, {'id': '45', 'type': 'argument_list', 'children': ['46', '47', '50', '53']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '47', 'type': 'keyword_argument', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': '_sorted_fields'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'by'}; {'id': '50', 'type': 'keyword_argument', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': '_ascending'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'ascending'}, {'id': '53', 'type': 'keyword_argument', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': '_schema'}, {'id': '55', 'type': 'attribute', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': '_schema'} | def sort_values(expr, by, ascending=True):
if not isinstance(by, list):
by = [by, ]
by = [it(expr) if inspect.isfunction(it) else it for it in by]
return SortedCollectionExpr(expr, _sorted_fields=by, _ascending=ascending,
_schema=expr._schema) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'reshuffle'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'by'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'ascending'}, {'id': '13', 'type': 'True', 'children': []}; {'id': '14', 'type': 'block', 'children': ['15', '23', '32', '47']}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'by'}; {'id': '18', 'type': 'boolean_operator', 'children': ['19', '20'], 'value': 'or'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'by'}; {'id': '20', 'type': 'call', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'RandomScalar'}; {'id': '22', 'type': 'argument_list', 'children': []}, {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'grouped'}; {'id': '26', 'type': 'call', 'children': ['27', '30']}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'groupby'}; {'id': '30', 'type': 'argument_list', 'children': ['31']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'by'}; {'id': '32', 'type': 'if_statement', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '34', 'type': 'block', 'children': ['35']}, {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'assignment', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'grouped'}; {'id': '38', 'type': 'call', 'children': ['39', '42']}, {'id': '39', 'type': 'attribute', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'grouped'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'sort_values'}; {'id': '42', 'type': 'argument_list', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '44', 'type': 'keyword_argument', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'ascending'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'ascending'}, {'id': '47', 'type': 'return_statement', 'children': ['48']}; {'id': '48', 'type': 'call', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'ReshuffledCollectionExpr'}; {'id': '50', 'type': 'argument_list', 'children': ['51', '54']}, {'id': '51', 'type': 'keyword_argument', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': '_input'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'grouped'}; {'id': '54', 'type': 'keyword_argument', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': '_schema'}; {'id': '56', 'type': 'attribute', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'expr'} | def reshuffle(expr, by=None, sort=None, ascending=True):
by = by or RandomScalar()
grouped = expr.groupby(by)
if sort:
grouped = grouped.sort_values(sort, ascending=ascending)
return ReshuffledCollectionExpr(_input=grouped, _schema=expr._schema) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '20']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'cumsum'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'ascending'}; {'id': '10', 'type': 'True', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'unique'}, {'id': '13', 'type': 'False', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'preceding'}; {'id': '16', 'type': 'None', 'children': []}, {'id': '17', 'type': 'default_parameter', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'following'}, {'id': '19', 'type': 'None', 'children': []}; {'id': '20', 'type': 'block', 'children': ['21', '44']}, {'id': '21', 'type': 'if_statement', 'children': ['22', '29', '36']}; {'id': '22', 'type': 'comparison_operator', 'children': ['23', '26'], 'value': '=='}, {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': '_data_type'}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'types'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'boolean'}, {'id': '29', 'type': 'block', 'children': ['30']}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}, {'id': '31', 'type': 'assignment', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'output_type'}, {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'types'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'int64'}; {'id': '36', 'type': 'else_clause', 'children': ['37']}, {'id': '37', 'type': 'block', 'children': ['38']}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}, {'id': '39', 'type': 'assignment', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'output_type'}, {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': '_data_type'}; {'id': '44', 'type': 'return_statement', 'children': ['45']}, {'id': '45', 'type': 'call', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': '_cumulative_op'}, {'id': '47', 'type': 'argument_list', 'children': ['48', '49', '50', '53', '56', '59', '62', '65']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'CumSum'}; {'id': '50', 'type': 'keyword_argument', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '53', 'type': 'keyword_argument', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'ascending'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'ascending'}; {'id': '56', 'type': 'keyword_argument', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'unique'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'unique'}, {'id': '59', 'type': 'keyword_argument', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'preceding'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'preceding'}; {'id': '62', 'type': 'keyword_argument', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'following'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'following'}, {'id': '65', 'type': 'keyword_argument', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'data_type'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'output_type'} | def cumsum(expr, sort=None, ascending=True, unique=False,
preceding=None, following=None):
if expr._data_type == types.boolean:
output_type = types.int64
else:
output_type = expr._data_type
return _cumulative_op(expr, CumSum, sort=sort, ascending=ascending,
unique=unique, preceding=preceding,
following=following, data_type=output_type) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '20']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'cummax'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'ascending'}; {'id': '10', 'type': 'True', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'unique'}, {'id': '13', 'type': 'False', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'preceding'}; {'id': '16', 'type': 'None', 'children': []}, {'id': '17', 'type': 'default_parameter', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'following'}, {'id': '19', 'type': 'None', 'children': []}; {'id': '20', 'type': 'block', 'children': ['21']}, {'id': '21', 'type': 'return_statement', 'children': ['22']}; {'id': '22', 'type': 'call', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': '_cumulative_op'}; {'id': '24', 'type': 'argument_list', 'children': ['25', '26', '27', '30', '33', '36', '39']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'expr'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'CumMax'}, {'id': '27', 'type': 'keyword_argument', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '30', 'type': 'keyword_argument', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'ascending'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'ascending'}, {'id': '33', 'type': 'keyword_argument', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'unique'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'unique'}; {'id': '36', 'type': 'keyword_argument', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'preceding'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'preceding'}, {'id': '39', 'type': 'keyword_argument', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'following'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'following'} | def cummax(expr, sort=None, ascending=True, unique=False,
preceding=None, following=None):
return _cumulative_op(expr, CumMax, sort=sort, ascending=ascending,
unique=unique, preceding=preceding,
following=following) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '20']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'cummin'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'ascending'}; {'id': '10', 'type': 'True', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'unique'}, {'id': '13', 'type': 'False', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'preceding'}; {'id': '16', 'type': 'None', 'children': []}, {'id': '17', 'type': 'default_parameter', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'following'}, {'id': '19', 'type': 'None', 'children': []}; {'id': '20', 'type': 'block', 'children': ['21']}, {'id': '21', 'type': 'return_statement', 'children': ['22']}; {'id': '22', 'type': 'call', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': '_cumulative_op'}; {'id': '24', 'type': 'argument_list', 'children': ['25', '26', '27', '30', '33', '36', '39']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'expr'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'CumMin'}, {'id': '27', 'type': 'keyword_argument', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '30', 'type': 'keyword_argument', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'ascending'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'ascending'}, {'id': '33', 'type': 'keyword_argument', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'unique'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'unique'}; {'id': '36', 'type': 'keyword_argument', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'preceding'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'preceding'}, {'id': '39', 'type': 'keyword_argument', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'following'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'following'} | def cummin(expr, sort=None, ascending=True, unique=False,
preceding=None, following=None):
return _cumulative_op(expr, CumMin, sort=sort, ascending=ascending,
unique=unique, preceding=preceding,
following=following) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '20']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'cummean'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'ascending'}; {'id': '10', 'type': 'True', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'unique'}, {'id': '13', 'type': 'False', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'preceding'}; {'id': '16', 'type': 'None', 'children': []}, {'id': '17', 'type': 'default_parameter', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'following'}, {'id': '19', 'type': 'None', 'children': []}; {'id': '20', 'type': 'block', 'children': ['21', '28']}, {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'data_type'}; {'id': '24', 'type': 'call', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': '_stats_type'}; {'id': '26', 'type': 'argument_list', 'children': ['27']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'expr'}; {'id': '28', 'type': 'return_statement', 'children': ['29']}, {'id': '29', 'type': 'call', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': '_cumulative_op'}, {'id': '31', 'type': 'argument_list', 'children': ['32', '33', '34', '37', '40', '43', '46', '49']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'CumMean'}; {'id': '34', 'type': 'keyword_argument', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '37', 'type': 'keyword_argument', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'ascending'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'ascending'}; {'id': '40', 'type': 'keyword_argument', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'unique'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'unique'}, {'id': '43', 'type': 'keyword_argument', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'preceding'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'preceding'}; {'id': '46', 'type': 'keyword_argument', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'following'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'following'}, {'id': '49', 'type': 'keyword_argument', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'data_type'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'data_type'} | def cummean(expr, sort=None, ascending=True, unique=False,
preceding=None, following=None):
data_type = _stats_type(expr)
return _cumulative_op(expr, CumMean, sort=sort, ascending=ascending,
unique=unique, preceding=preceding,
following=following, data_type=data_type) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '20']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'cummedian'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'ascending'}; {'id': '10', 'type': 'True', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'unique'}, {'id': '13', 'type': 'False', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'preceding'}; {'id': '16', 'type': 'None', 'children': []}, {'id': '17', 'type': 'default_parameter', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'following'}, {'id': '19', 'type': 'None', 'children': []}; {'id': '20', 'type': 'block', 'children': ['21', '28']}, {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'data_type'}; {'id': '24', 'type': 'call', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': '_stats_type'}; {'id': '26', 'type': 'argument_list', 'children': ['27']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'expr'}; {'id': '28', 'type': 'return_statement', 'children': ['29']}, {'id': '29', 'type': 'call', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': '_cumulative_op'}, {'id': '31', 'type': 'argument_list', 'children': ['32', '33', '34', '37', '40', '43', '46', '49']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'CumMedian'}; {'id': '34', 'type': 'keyword_argument', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '37', 'type': 'keyword_argument', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'ascending'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'ascending'}; {'id': '40', 'type': 'keyword_argument', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'unique'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'unique'}, {'id': '43', 'type': 'keyword_argument', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'preceding'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'preceding'}; {'id': '46', 'type': 'keyword_argument', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'following'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'following'}, {'id': '49', 'type': 'keyword_argument', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'data_type'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'data_type'} | def cummedian(expr, sort=None, ascending=True, unique=False,
preceding=None, following=None):
data_type = _stats_type(expr)
return _cumulative_op(expr, CumMedian, sort=sort, ascending=ascending,
unique=unique, preceding=preceding,
following=following, data_type=data_type) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '20']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'cumcount'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'ascending'}; {'id': '10', 'type': 'True', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'unique'}, {'id': '13', 'type': 'False', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'preceding'}; {'id': '16', 'type': 'None', 'children': []}, {'id': '17', 'type': 'default_parameter', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'following'}, {'id': '19', 'type': 'None', 'children': []}; {'id': '20', 'type': 'block', 'children': ['21', '27']}, {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'data_type'}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'types'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'int64'}, {'id': '27', 'type': 'return_statement', 'children': ['28']}; {'id': '28', 'type': 'call', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': '_cumulative_op'}; {'id': '30', 'type': 'argument_list', 'children': ['31', '32', '33', '36', '39', '42', '45', '48']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'expr'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'CumCount'}, {'id': '33', 'type': 'keyword_argument', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '36', 'type': 'keyword_argument', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'ascending'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'ascending'}, {'id': '39', 'type': 'keyword_argument', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'unique'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'unique'}; {'id': '42', 'type': 'keyword_argument', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'preceding'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'preceding'}, {'id': '45', 'type': 'keyword_argument', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'following'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'following'}; {'id': '48', 'type': 'keyword_argument', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'data_type'} | def cumcount(expr, sort=None, ascending=True, unique=False,
preceding=None, following=None):
data_type = types.int64
return _cumulative_op(expr, CumCount, sort=sort, ascending=ascending,
unique=unique, preceding=preceding,
following=following, data_type=data_type) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '20']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'cumstd'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'ascending'}; {'id': '10', 'type': 'True', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'unique'}, {'id': '13', 'type': 'False', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'preceding'}; {'id': '16', 'type': 'None', 'children': []}, {'id': '17', 'type': 'default_parameter', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'following'}, {'id': '19', 'type': 'None', 'children': []}; {'id': '20', 'type': 'block', 'children': ['21', '28']}, {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'data_type'}; {'id': '24', 'type': 'call', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': '_stats_type'}; {'id': '26', 'type': 'argument_list', 'children': ['27']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'expr'}; {'id': '28', 'type': 'return_statement', 'children': ['29']}, {'id': '29', 'type': 'call', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': '_cumulative_op'}, {'id': '31', 'type': 'argument_list', 'children': ['32', '33', '34', '37', '40', '43', '46', '49']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'CumStd'}; {'id': '34', 'type': 'keyword_argument', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '37', 'type': 'keyword_argument', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'ascending'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'ascending'}; {'id': '40', 'type': 'keyword_argument', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'unique'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'unique'}, {'id': '43', 'type': 'keyword_argument', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'preceding'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'preceding'}; {'id': '46', 'type': 'keyword_argument', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'following'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'following'}, {'id': '49', 'type': 'keyword_argument', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'data_type'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'data_type'} | def cumstd(expr, sort=None, ascending=True, unique=False,
preceding=None, following=None):
data_type = _stats_type(expr)
return _cumulative_op(expr, CumStd, sort=sort, ascending=ascending,
unique=unique, preceding=preceding,
following=following, data_type=data_type) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '15']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'nth_value'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'nth'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'skip_nulls'}; {'id': '8', 'type': 'False', 'children': []}, {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '11', 'type': 'None', 'children': []}; {'id': '12', 'type': 'default_parameter', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'ascending'}; {'id': '14', 'type': 'True', 'children': []}, {'id': '15', 'type': 'block', 'children': ['16']}; {'id': '16', 'type': 'return_statement', 'children': ['17']}, {'id': '17', 'type': 'call', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': '_cumulative_op'}, {'id': '19', 'type': 'argument_list', 'children': ['20', '21', '22', '27', '30', '33', '36']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'NthValue'}; {'id': '22', 'type': 'keyword_argument', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'data_type'}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'expr'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': '_data_type'}, {'id': '27', 'type': 'keyword_argument', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '30', 'type': 'keyword_argument', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'ascending'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'ascending'}, {'id': '33', 'type': 'keyword_argument', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': '_nth'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'nth'}; {'id': '36', 'type': 'keyword_argument', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': '_skip_nulls'} | def nth_value(expr, nth, skip_nulls=False, sort=None, ascending=True):
return _cumulative_op(expr, NthValue, data_type=expr._data_type, sort=sort,
ascending=ascending, _nth=nth, _skip_nulls=skip_nulls) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'rank'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'ascending'}; {'id': '10', 'type': 'True', 'children': []}, {'id': '11', 'type': 'block', 'children': ['12']}; {'id': '12', 'type': 'return_statement', 'children': ['13']}, {'id': '13', 'type': 'call', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': '_rank_op'}, {'id': '15', 'type': 'argument_list', 'children': ['16', '17', '18', '21', '24']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'Rank'}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'types'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'int64'}, {'id': '21', 'type': 'keyword_argument', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '24', 'type': 'keyword_argument', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'ascending'} | def rank(expr, sort=None, ascending=True):
return _rank_op(expr, Rank, types.int64, sort=sort, ascending=ascending) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'dense_rank'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'ascending'}; {'id': '10', 'type': 'True', 'children': []}, {'id': '11', 'type': 'block', 'children': ['12']}; {'id': '12', 'type': 'return_statement', 'children': ['13']}, {'id': '13', 'type': 'call', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': '_rank_op'}, {'id': '15', 'type': 'argument_list', 'children': ['16', '17', '18', '21', '24']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'DenseRank'}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'types'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'int64'}, {'id': '21', 'type': 'keyword_argument', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '24', 'type': 'keyword_argument', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'ascending'} | def dense_rank(expr, sort=None, ascending=True):
return _rank_op(expr, DenseRank, types.int64, sort=sort, ascending=ascending) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'percent_rank'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'ascending'}; {'id': '10', 'type': 'True', 'children': []}, {'id': '11', 'type': 'block', 'children': ['12']}; {'id': '12', 'type': 'return_statement', 'children': ['13']}, {'id': '13', 'type': 'call', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': '_rank_op'}, {'id': '15', 'type': 'argument_list', 'children': ['16', '17', '18', '21', '24']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'PercentRank'}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'types'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'float64'}, {'id': '21', 'type': 'keyword_argument', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '24', 'type': 'keyword_argument', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'ascending'} | def percent_rank(expr, sort=None, ascending=True):
return _rank_op(expr, PercentRank, types.float64, sort=sort, ascending=ascending) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'row_number'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'ascending'}; {'id': '10', 'type': 'True', 'children': []}, {'id': '11', 'type': 'block', 'children': ['12']}; {'id': '12', 'type': 'return_statement', 'children': ['13']}, {'id': '13', 'type': 'call', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': '_rank_op'}, {'id': '15', 'type': 'argument_list', 'children': ['16', '17', '18', '21', '24']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'RowNumber'}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'types'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'int64'}, {'id': '21', 'type': 'keyword_argument', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '24', 'type': 'keyword_argument', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'ascending'} | def row_number(expr, sort=None, ascending=True):
return _rank_op(expr, RowNumber, types.int64, sort=sort, ascending=ascending) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '15']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'qcut'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'bins'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'labels'}; {'id': '8', 'type': 'False', 'children': []}, {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '11', 'type': 'None', 'children': []}; {'id': '12', 'type': 'default_parameter', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'ascending'}; {'id': '14', 'type': 'True', 'children': []}, {'id': '15', 'type': 'block', 'children': ['16', '28']}; {'id': '16', 'type': 'if_statement', 'children': ['17', '22']}, {'id': '17', 'type': 'boolean_operator', 'children': ['18', '21'], 'value': 'or'}; {'id': '18', 'type': 'comparison_operator', 'children': ['19', '20'], 'value': 'is'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'labels'}; {'id': '20', 'type': 'None', 'children': []}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'labels'}; {'id': '22', 'type': 'block', 'children': ['23']}, {'id': '23', 'type': 'raise_statement', 'children': ['24']}; {'id': '24', 'type': 'call', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'NotImplementedError'}; {'id': '26', 'type': 'argument_list', 'children': ['27']}, {'id': '27', 'type': 'string', 'children': [], 'value': "'Showing bins or customizing labels not supported'"}; {'id': '28', 'type': 'return_statement', 'children': ['29']}, {'id': '29', 'type': 'call', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': '_rank_op'}, {'id': '31', 'type': 'argument_list', 'children': ['32', '33', '34', '37', '40', '43']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'QCut'}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'types'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'int64'}, {'id': '37', 'type': 'keyword_argument', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '40', 'type': 'keyword_argument', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'ascending'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'ascending'}, {'id': '43', 'type': 'keyword_argument', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': '_bins'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'bins'} | def qcut(expr, bins, labels=False, sort=None, ascending=True):
if labels is None or labels:
raise NotImplementedError('Showing bins or customizing labels not supported')
return _rank_op(expr, QCut, types.int64, sort=sort, ascending=ascending,
_bins=bins) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'cume_dist'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'ascending'}; {'id': '10', 'type': 'True', 'children': []}, {'id': '11', 'type': 'block', 'children': ['12']}; {'id': '12', 'type': 'return_statement', 'children': ['13']}, {'id': '13', 'type': 'call', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': '_rank_op'}, {'id': '15', 'type': 'argument_list', 'children': ['16', '17', '18', '21', '24']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'CumeDist'}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'types'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'float64'}, {'id': '21', 'type': 'keyword_argument', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '24', 'type': 'keyword_argument', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'ascending'} | def cume_dist(expr, sort=None, ascending=True):
return _rank_op(expr, CumeDist, types.float64, sort=sort, ascending=ascending) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '15']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'lag'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'offset'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'default'}; {'id': '8', 'type': 'None', 'children': []}, {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '11', 'type': 'None', 'children': []}; {'id': '12', 'type': 'default_parameter', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'ascending'}; {'id': '14', 'type': 'True', 'children': []}, {'id': '15', 'type': 'block', 'children': ['16']}; {'id': '16', 'type': 'return_statement', 'children': ['17']}, {'id': '17', 'type': 'call', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': '_shift_op'}, {'id': '19', 'type': 'argument_list', 'children': ['20', '21', '22', '23', '26', '29']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'Lag'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'offset'}, {'id': '23', 'type': 'keyword_argument', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'default'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'default'}; {'id': '26', 'type': 'keyword_argument', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '29', 'type': 'keyword_argument', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'ascending'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'ascending'} | def lag(expr, offset, default=None, sort=None, ascending=True):
return _shift_op(expr, Lag, offset, default=default,
sort=sort, ascending=ascending) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '15']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'lead'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'offset'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'default'}; {'id': '8', 'type': 'None', 'children': []}, {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '11', 'type': 'None', 'children': []}; {'id': '12', 'type': 'default_parameter', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'ascending'}; {'id': '14', 'type': 'True', 'children': []}, {'id': '15', 'type': 'block', 'children': ['16']}; {'id': '16', 'type': 'return_statement', 'children': ['17']}, {'id': '17', 'type': 'call', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': '_shift_op'}, {'id': '19', 'type': 'argument_list', 'children': ['20', '21', '22', '23', '26', '29']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'Lead'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'offset'}, {'id': '23', 'type': 'keyword_argument', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'default'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'default'}; {'id': '26', 'type': 'keyword_argument', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '29', 'type': 'keyword_argument', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'ascending'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'ascending'} | def lead(expr, offset, default=None, sort=None, ascending=True):
return _shift_op(expr, Lead, offset, default=default,
sort=sort, ascending=ascending) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'value_counts'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '7', 'type': 'True', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'ascending'}; {'id': '10', 'type': 'False', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'dropna'}, {'id': '13', 'type': 'False', 'children': []}; {'id': '14', 'type': 'block', 'children': ['15', '23', '33']}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'names'}; {'id': '18', 'type': 'list', 'children': ['19', '22'], 'value': "[expr.name, 'count']"}, {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '22', 'type': 'string', 'children': [], 'value': "'count'"}, {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'typos'}; {'id': '26', 'type': 'list', 'children': ['27', '30'], 'value': '[expr.dtype, types.int64]'}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'expr'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'dtype'}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'types'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'int64'}, {'id': '33', 'type': 'return_statement', 'children': ['34']}; {'id': '34', 'type': 'call', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'ValueCounts'}; {'id': '36', 'type': 'argument_list', 'children': ['37', '40', '49', '52', '55']}, {'id': '37', 'type': 'keyword_argument', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': '_input'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'expr'}; {'id': '40', 'type': 'keyword_argument', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': '_schema'}; {'id': '42', 'type': 'call', 'children': ['43', '46']}, {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'Schema'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'from_lists'}; {'id': '46', 'type': 'argument_list', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'names'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'typos'}, {'id': '49', 'type': 'keyword_argument', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': '_sort'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '52', 'type': 'keyword_argument', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': '_ascending'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'ascending'}, {'id': '55', 'type': 'keyword_argument', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': '_dropna'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'dropna'} | def value_counts(expr, sort=True, ascending=False, dropna=False):
names = [expr.name, 'count']
typos = [expr.dtype, types.int64]
return ValueCounts(_input=expr, _schema=Schema.from_lists(names, typos),
_sort=sort, _ascending=ascending, _dropna=dropna) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'last'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'limit'}, {'id': '7', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '8', 'type': 'dictionary_splat_pattern', 'children': ['9']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '10', 'type': 'block', 'children': ['11']}, {'id': '11', 'type': 'return_statement', 'children': ['12']}; {'id': '12', 'type': 'call', 'children': ['13', '16']}, {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'collection_instance'}; {'id': '16', 'type': 'argument_list', 'children': ['17']}, {'id': '17', 'type': 'call', 'children': ['18', '42']}; {'id': '18', 'type': 'attribute', 'children': ['19', '41']}, {'id': '19', 'type': 'call', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'db_adapter'}, {'id': '23', 'type': 'argument_list', 'children': ['24', '32']}; {'id': '24', 'type': 'keyword_argument', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'db_name'}; {'id': '26', 'type': 'call', 'children': ['27', '30']}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '30', 'type': 'argument_list', 'children': ['31']}, {'id': '31', 'type': 'string', 'children': [], 'value': "'db'"}; {'id': '32', 'type': 'keyword_argument', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'role'}; {'id': '34', 'type': 'call', 'children': ['35', '38']}, {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '38', 'type': 'argument_list', 'children': ['39', '40']}, {'id': '39', 'type': 'string', 'children': [], 'value': "'role'"}; {'id': '40', 'type': 'string', 'children': [], 'value': "'replica'"}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'select'}; {'id': '42', 'type': 'argument_list', 'children': ['43', '46', '49']}, {'id': '43', 'type': 'keyword_argument', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'where'}, {'id': '45', 'type': 'string', 'children': [], 'value': "'created_at IS NOT NULL'"}; {'id': '46', 'type': 'keyword_argument', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'order'}; {'id': '48', 'type': 'string', 'children': [], 'value': "'created_at DESC'"}, {'id': '49', 'type': 'keyword_argument', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'limit'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'limit'} | def last(self, limit=1, **kwargs):
return self.collection_instance(
self.db_adapter(
db_name=kwargs.get('db'),
role=kwargs.get('role', 'replica')
).select(
where='created_at IS NOT NULL',
order='created_at DESC',
limit=limit
)
) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '4']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_compile_itemsort'}, {'id': '3', 'type': 'parameters', 'children': []}; {'id': '4', 'type': 'block', 'children': ['5', '7', '16', '27', '38', '50', '60', '79', '106']}, {'id': '5', 'type': 'expression_statement', 'children': ['6']}; {'id': '6', 'type': 'string', 'children': [], 'value': "'''return sort function of mappings'''"}, {'id': '7', 'type': 'function_definition', 'children': ['8', '9', '11']}; {'id': '8', 'type': 'function_name', 'children': [], 'value': 'is_extra'}, {'id': '9', 'type': 'parameters', 'children': ['10']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'key_'}, {'id': '11', 'type': 'block', 'children': ['12']}; {'id': '12', 'type': 'return_statement', 'children': ['13']}, {'id': '13', 'type': 'comparison_operator', 'children': ['14', '15'], 'value': 'is'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'key_'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'Extra'}; {'id': '16', 'type': 'function_definition', 'children': ['17', '18', '20']}, {'id': '17', 'type': 'function_name', 'children': [], 'value': 'is_remove'}; {'id': '18', 'type': 'parameters', 'children': ['19']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'key_'}; {'id': '20', 'type': 'block', 'children': ['21']}, {'id': '21', 'type': 'return_statement', 'children': ['22']}; {'id': '22', 'type': 'call', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '24', 'type': 'argument_list', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'key_'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'Remove'}, {'id': '27', 'type': 'function_definition', 'children': ['28', '29', '31']}; {'id': '28', 'type': 'function_name', 'children': [], 'value': 'is_marker'}, {'id': '29', 'type': 'parameters', 'children': ['30']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'key_'}, {'id': '31', 'type': 'block', 'children': ['32']}; {'id': '32', 'type': 'return_statement', 'children': ['33']}, {'id': '33', 'type': 'call', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '35', 'type': 'argument_list', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'key_'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'Marker'}; {'id': '38', 'type': 'function_definition', 'children': ['39', '40', '42']}, {'id': '39', 'type': 'function_name', 'children': [], 'value': 'is_type'}; {'id': '40', 'type': 'parameters', 'children': ['41']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'key_'}; {'id': '42', 'type': 'block', 'children': ['43']}, {'id': '43', 'type': 'return_statement', 'children': ['44']}; {'id': '44', 'type': 'call', 'children': ['45', '48']}, {'id': '45', 'type': 'attribute', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'inspect'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'isclass'}; {'id': '48', 'type': 'argument_list', 'children': ['49']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'key_'}; {'id': '50', 'type': 'function_definition', 'children': ['51', '52', '54']}, {'id': '51', 'type': 'function_name', 'children': [], 'value': 'is_callable'}; {'id': '52', 'type': 'parameters', 'children': ['53']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'key_'}; {'id': '54', 'type': 'block', 'children': ['55']}, {'id': '55', 'type': 'return_statement', 'children': ['56']}; {'id': '56', 'type': 'call', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'callable'}; {'id': '58', 'type': 'argument_list', 'children': ['59']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'key_'}; {'id': '60', 'type': 'expression_statement', 'children': ['61']}, {'id': '61', 'type': 'assignment', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'priority'}, {'id': '63', 'type': 'list', 'children': ['64', '67', '70', '73', '76'], 'value': '[(1, is_remove),\n (2, is_marker),\n (4, is_type),\n (3, is_callable),\n (5, is_extra)]'}; {'id': '64', 'type': 'tuple', 'children': ['65', '66']}, {'id': '65', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'is_remove'}, {'id': '67', 'type': 'tuple', 'children': ['68', '69']}; {'id': '68', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'is_marker'}; {'id': '70', 'type': 'tuple', 'children': ['71', '72']}, {'id': '71', 'type': 'integer', 'children': [], 'value': '4'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'is_type'}, {'id': '73', 'type': 'tuple', 'children': ['74', '75']}; {'id': '74', 'type': 'integer', 'children': [], 'value': '3'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'is_callable'}; {'id': '76', 'type': 'tuple', 'children': ['77', '78']}, {'id': '77', 'type': 'integer', 'children': [], 'value': '5'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'is_extra'}, {'id': '79', 'type': 'function_definition', 'children': ['80', '81', '83']}; {'id': '80', 'type': 'function_name', 'children': [], 'value': 'item_priority'}, {'id': '81', 'type': 'parameters', 'children': ['82']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'item_'}, {'id': '83', 'type': 'block', 'children': ['84', '90', '104']}; {'id': '84', 'type': 'expression_statement', 'children': ['85']}, {'id': '85', 'type': 'assignment', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'key_'}, {'id': '87', 'type': 'subscript', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'item_'}, {'id': '89', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '90', 'type': 'for_statement', 'children': ['91', '94', '95']}, {'id': '91', 'type': 'pattern_list', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'check_'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'priority'}, {'id': '95', 'type': 'block', 'children': ['96']}; {'id': '96', 'type': 'if_statement', 'children': ['97', '101']}, {'id': '97', 'type': 'call', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'check_'}, {'id': '99', 'type': 'argument_list', 'children': ['100']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'key_'}, {'id': '101', 'type': 'block', 'children': ['102']}; {'id': '102', 'type': 'return_statement', 'children': ['103']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '104', 'type': 'return_statement', 'children': ['105']}, {'id': '105', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '106', 'type': 'return_statement', 'children': ['107']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'item_priority'} | def _compile_itemsort():
'''return sort function of mappings'''
def is_extra(key_):
return key_ is Extra
def is_remove(key_):
return isinstance(key_, Remove)
def is_marker(key_):
return isinstance(key_, Marker)
def is_type(key_):
return inspect.isclass(key_)
def is_callable(key_):
return callable(key_)
priority = [(1, is_remove),
(2, is_marker),
(4, is_type),
(3, is_callable),
(5, is_extra)]
def item_priority(item_):
key_ = item_[0]
for i, check_ in priority:
if check_(key_):
return i
return 0
return item_priority |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_compile_dict'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'schema'}; {'id': '6', 'type': 'block', 'children': ['7', '19', '23', '27', '83', '308']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'base_validate'}; {'id': '10', 'type': 'call', 'children': ['11', '14']}, {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': '_compile_mapping'}; {'id': '14', 'type': 'argument_list', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'schema'}; {'id': '16', 'type': 'keyword_argument', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'invalid_msg'}; {'id': '18', 'type': 'string', 'children': [], 'value': "'dictionary value'"}, {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'groups_of_exclusion'}; {'id': '22', 'type': 'dictionary', 'children': []}, {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'groups_of_inclusion'}; {'id': '26', 'type': 'dictionary', 'children': []}, {'id': '27', 'type': 'for_statement', 'children': ['28', '29', '30']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'schema'}; {'id': '30', 'type': 'block', 'children': ['31']}, {'id': '31', 'type': 'if_statement', 'children': ['32', '37', '57']}; {'id': '32', 'type': 'call', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '34', 'type': 'argument_list', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'Exclusive'}, {'id': '37', 'type': 'block', 'children': ['38', '50']}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}, {'id': '39', 'type': 'assignment', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'g'}, {'id': '41', 'type': 'call', 'children': ['42', '45']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'groups_of_exclusion'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'setdefault'}, {'id': '45', 'type': 'argument_list', 'children': ['46', '49']}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'group_of_exclusion'}, {'id': '49', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '50', 'type': 'expression_statement', 'children': ['51']}, {'id': '51', 'type': 'call', 'children': ['52', '55']}; {'id': '52', 'type': 'attribute', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'g'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '55', 'type': 'argument_list', 'children': ['56']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '57', 'type': 'elif_clause', 'children': ['58', '63']}; {'id': '58', 'type': 'call', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '60', 'type': 'argument_list', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'Inclusive'}, {'id': '63', 'type': 'block', 'children': ['64', '76']}; {'id': '64', 'type': 'expression_statement', 'children': ['65']}, {'id': '65', 'type': 'assignment', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'g'}, {'id': '67', 'type': 'call', 'children': ['68', '71']}; {'id': '68', 'type': 'attribute', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'groups_of_inclusion'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'setdefault'}, {'id': '71', 'type': 'argument_list', 'children': ['72', '75']}; {'id': '72', 'type': 'attribute', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'group_of_inclusion'}, {'id': '75', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '76', 'type': 'expression_statement', 'children': ['77']}, {'id': '77', 'type': 'call', 'children': ['78', '81']}; {'id': '78', 'type': 'attribute', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'g'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '81', 'type': 'argument_list', 'children': ['82']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '83', 'type': 'function_definition', 'children': ['84', '85', '88']}; {'id': '84', 'type': 'function_name', 'children': [], 'value': 'validate_dict'}, {'id': '85', 'type': 'parameters', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '88', 'type': 'block', 'children': ['89', '105', '109', '184', '194', '280', '290', '298']}, {'id': '89', 'type': 'if_statement', 'children': ['90', '96']}; {'id': '90', 'type': 'not_operator', 'children': ['91']}, {'id': '91', 'type': 'call', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '93', 'type': 'argument_list', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'dict'}; {'id': '96', 'type': 'block', 'children': ['97']}, {'id': '97', 'type': 'raise_statement', 'children': ['98']}; {'id': '98', 'type': 'call', 'children': ['99', '102']}, {'id': '99', 'type': 'attribute', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'er'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'DictInvalid'}; {'id': '102', 'type': 'argument_list', 'children': ['103', '104']}, {'id': '103', 'type': 'string', 'children': [], 'value': "'expected a dictionary'"}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '105', 'type': 'expression_statement', 'children': ['106']}; {'id': '106', 'type': 'assignment', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'errors'}; {'id': '108', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '109', 'type': 'for_statement', 'children': ['110', '113', '118']}; {'id': '110', 'type': 'pattern_list', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'label'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'group'}, {'id': '113', 'type': 'call', 'children': ['114', '117']}; {'id': '114', 'type': 'attribute', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'groups_of_exclusion'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '117', 'type': 'argument_list', 'children': []}; {'id': '118', 'type': 'block', 'children': ['119', '123']}, {'id': '119', 'type': 'expression_statement', 'children': ['120']}; {'id': '120', 'type': 'assignment', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'exists'}; {'id': '122', 'type': 'False', 'children': []}, {'id': '123', 'type': 'for_statement', 'children': ['124', '125', '126']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'exclusive'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'group'}; {'id': '126', 'type': 'block', 'children': ['127']}, {'id': '127', 'type': 'if_statement', 'children': ['128', '133']}; {'id': '128', 'type': 'comparison_operator', 'children': ['129', '132'], 'value': 'in'}, {'id': '129', 'type': 'attribute', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'exclusive'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'schema'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '133', 'type': 'block', 'children': ['134', '180']}; {'id': '134', 'type': 'if_statement', 'children': ['135', '136']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'exists'}; {'id': '136', 'type': 'block', 'children': ['137', '156', '166', '179']}, {'id': '137', 'type': 'expression_statement', 'children': ['138']}; {'id': '138', 'type': 'assignment', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'msg'}; {'id': '140', 'type': 'conditional_expression', 'children': ['141', '144', '153'], 'value': 'if'}, {'id': '141', 'type': 'attribute', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'exclusive'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'msg'}; {'id': '144', 'type': 'boolean_operator', 'children': ['145', '150'], 'value': 'and'}, {'id': '145', 'type': 'call', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'hasattr'}, {'id': '147', 'type': 'argument_list', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'exclusive'}, {'id': '149', 'type': 'string', 'children': [], 'value': "'msg'"}; {'id': '150', 'type': 'attribute', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'exclusive'}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'msg'}, {'id': '153', 'type': 'binary_operator', 'children': ['154', '155'], 'value': '%'}; {'id': '154', 'type': 'string', 'children': [], 'value': '"two or more values in the same group of exclusion \'%s\'"'}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'label'}; {'id': '156', 'type': 'expression_statement', 'children': ['157']}, {'id': '157', 'type': 'assignment', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'next_path'}, {'id': '159', 'type': 'binary_operator', 'children': ['160', '161'], 'value': '+'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '161', 'type': 'list', 'children': ['162'], 'value': '[VirtualPathComponent(label)]'}; {'id': '162', 'type': 'call', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'VirtualPathComponent'}; {'id': '164', 'type': 'argument_list', 'children': ['165']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'label'}; {'id': '166', 'type': 'expression_statement', 'children': ['167']}, {'id': '167', 'type': 'call', 'children': ['168', '171']}; {'id': '168', 'type': 'attribute', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'errors'}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '171', 'type': 'argument_list', 'children': ['172']}; {'id': '172', 'type': 'call', 'children': ['173', '176']}, {'id': '173', 'type': 'attribute', 'children': ['174', '175']}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'er'}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'ExclusiveInvalid'}; {'id': '176', 'type': 'argument_list', 'children': ['177', '178']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'msg'}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'next_path'}, {'id': '179', 'type': 'break_statement', 'children': []}; {'id': '180', 'type': 'expression_statement', 'children': ['181']}, {'id': '181', 'type': 'assignment', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'exists'}, {'id': '183', 'type': 'True', 'children': []}; {'id': '184', 'type': 'if_statement', 'children': ['185', '186']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'errors'}; {'id': '186', 'type': 'block', 'children': ['187']}, {'id': '187', 'type': 'raise_statement', 'children': ['188']}; {'id': '188', 'type': 'call', 'children': ['189', '192']}, {'id': '189', 'type': 'attribute', 'children': ['190', '191']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'er'}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'MultipleInvalid'}; {'id': '192', 'type': 'argument_list', 'children': ['193']}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'errors'}; {'id': '194', 'type': 'for_statement', 'children': ['195', '198', '203']}, {'id': '195', 'type': 'pattern_list', 'children': ['196', '197']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'label'}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'group'}; {'id': '198', 'type': 'call', 'children': ['199', '202']}, {'id': '199', 'type': 'attribute', 'children': ['200', '201']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'groups_of_inclusion'}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'items'}; {'id': '202', 'type': 'argument_list', 'children': []}, {'id': '203', 'type': 'block', 'children': ['204', '216']}; {'id': '204', 'type': 'expression_statement', 'children': ['205']}, {'id': '205', 'type': 'assignment', 'children': ['206', '207']}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'included'}, {'id': '207', 'type': 'list_comprehension', 'children': ['208', '213']}; {'id': '208', 'type': 'comparison_operator', 'children': ['209', '212'], 'value': 'in'}, {'id': '209', 'type': 'attribute', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'schema'}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '213', 'type': 'for_in_clause', 'children': ['214', '215']}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'group'}; {'id': '216', 'type': 'if_statement', 'children': ['217', '227']}, {'id': '217', 'type': 'boolean_operator', 'children': ['218', '222'], 'value': 'and'}; {'id': '218', 'type': 'call', 'children': ['219', '220']}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'any'}; {'id': '220', 'type': 'argument_list', 'children': ['221']}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'included'}; {'id': '222', 'type': 'not_operator', 'children': ['223']}, {'id': '223', 'type': 'call', 'children': ['224', '225']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'all'}, {'id': '225', 'type': 'argument_list', 'children': ['226']}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'included'}, {'id': '227', 'type': 'block', 'children': ['228', '234', '256', '266', '279']}; {'id': '228', 'type': 'expression_statement', 'children': ['229']}, {'id': '229', 'type': 'assignment', 'children': ['230', '231']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'msg'}, {'id': '231', 'type': 'binary_operator', 'children': ['232', '233'], 'value': '%'}; {'id': '232', 'type': 'string', 'children': [], 'value': '"some but not all values in the same group of inclusion \'%s\'"'}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'label'}; {'id': '234', 'type': 'for_statement', 'children': ['235', '236', '237']}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'g'}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'group'}, {'id': '237', 'type': 'block', 'children': ['238']}; {'id': '238', 'type': 'if_statement', 'children': ['239', '248']}, {'id': '239', 'type': 'boolean_operator', 'children': ['240', '245'], 'value': 'and'}; {'id': '240', 'type': 'call', 'children': ['241', '242']}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'hasattr'}; {'id': '242', 'type': 'argument_list', 'children': ['243', '244']}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'g'}; {'id': '244', 'type': 'string', 'children': [], 'value': "'msg'"}, {'id': '245', 'type': 'attribute', 'children': ['246', '247']}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'g'}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'msg'}; {'id': '248', 'type': 'block', 'children': ['249', '255']}, {'id': '249', 'type': 'expression_statement', 'children': ['250']}; {'id': '250', 'type': 'assignment', 'children': ['251', '252']}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'msg'}; {'id': '252', 'type': 'attribute', 'children': ['253', '254']}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'g'}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'msg'}, {'id': '255', 'type': 'break_statement', 'children': []}; {'id': '256', 'type': 'expression_statement', 'children': ['257']}, {'id': '257', 'type': 'assignment', 'children': ['258', '259']}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'next_path'}, {'id': '259', 'type': 'binary_operator', 'children': ['260', '261'], 'value': '+'}; {'id': '260', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '261', 'type': 'list', 'children': ['262'], 'value': '[VirtualPathComponent(label)]'}; {'id': '262', 'type': 'call', 'children': ['263', '264']}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'VirtualPathComponent'}; {'id': '264', 'type': 'argument_list', 'children': ['265']}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'label'}; {'id': '266', 'type': 'expression_statement', 'children': ['267']}, {'id': '267', 'type': 'call', 'children': ['268', '271']}; {'id': '268', 'type': 'attribute', 'children': ['269', '270']}, {'id': '269', 'type': 'identifier', 'children': [], 'value': 'errors'}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '271', 'type': 'argument_list', 'children': ['272']}; {'id': '272', 'type': 'call', 'children': ['273', '276']}, {'id': '273', 'type': 'attribute', 'children': ['274', '275']}; {'id': '274', 'type': 'identifier', 'children': [], 'value': 'er'}, {'id': '275', 'type': 'identifier', 'children': [], 'value': 'InclusiveInvalid'}; {'id': '276', 'type': 'argument_list', 'children': ['277', '278']}, {'id': '277', 'type': 'identifier', 'children': [], 'value': 'msg'}; {'id': '278', 'type': 'identifier', 'children': [], 'value': 'next_path'}, {'id': '279', 'type': 'break_statement', 'children': []}; {'id': '280', 'type': 'if_statement', 'children': ['281', '282']}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'errors'}; {'id': '282', 'type': 'block', 'children': ['283']}, {'id': '283', 'type': 'raise_statement', 'children': ['284']}; {'id': '284', 'type': 'call', 'children': ['285', '288']}, {'id': '285', 'type': 'attribute', 'children': ['286', '287']}; {'id': '286', 'type': 'identifier', 'children': [], 'value': 'er'}, {'id': '287', 'type': 'identifier', 'children': [], 'value': 'MultipleInvalid'}; {'id': '288', 'type': 'argument_list', 'children': ['289']}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'errors'}; {'id': '290', 'type': 'expression_statement', 'children': ['291']}, {'id': '291', 'type': 'assignment', 'children': ['292', '293']}; {'id': '292', 'type': 'identifier', 'children': [], 'value': 'out'}, {'id': '293', 'type': 'call', 'children': ['294', '297']}; {'id': '294', 'type': 'attribute', 'children': ['295', '296']}, {'id': '295', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '296', 'type': 'identifier', 'children': [], 'value': '__class__'}, {'id': '297', 'type': 'argument_list', 'children': []}; {'id': '298', 'type': 'return_statement', 'children': ['299']}, {'id': '299', 'type': 'call', 'children': ['300', '301']}; {'id': '300', 'type': 'identifier', 'children': [], 'value': 'base_validate'}, {'id': '301', 'type': 'argument_list', 'children': ['302', '303', '307']}; {'id': '302', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '303', 'type': 'call', 'children': ['304', '305']}; {'id': '304', 'type': 'identifier', 'children': [], 'value': 'iteritems'}, {'id': '305', 'type': 'argument_list', 'children': ['306']}; {'id': '306', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '307', 'type': 'identifier', 'children': [], 'value': 'out'}; {'id': '308', 'type': 'return_statement', 'children': ['309']}, {'id': '309', 'type': 'identifier', 'children': [], 'value': 'validate_dict'} | def _compile_dict(self, schema):
base_validate = self._compile_mapping(
schema, invalid_msg='dictionary value')
groups_of_exclusion = {}
groups_of_inclusion = {}
for node in schema:
if isinstance(node, Exclusive):
g = groups_of_exclusion.setdefault(node.group_of_exclusion, [])
g.append(node)
elif isinstance(node, Inclusive):
g = groups_of_inclusion.setdefault(node.group_of_inclusion, [])
g.append(node)
def validate_dict(path, data):
if not isinstance(data, dict):
raise er.DictInvalid('expected a dictionary', path)
errors = []
for label, group in groups_of_exclusion.items():
exists = False
for exclusive in group:
if exclusive.schema in data:
if exists:
msg = exclusive.msg if hasattr(exclusive, 'msg') and exclusive.msg else \
"two or more values in the same group of exclusion '%s'" % label
next_path = path + [VirtualPathComponent(label)]
errors.append(er.ExclusiveInvalid(msg, next_path))
break
exists = True
if errors:
raise er.MultipleInvalid(errors)
for label, group in groups_of_inclusion.items():
included = [node.schema in data for node in group]
if any(included) and not all(included):
msg = "some but not all values in the same group of inclusion '%s'" % label
for g in group:
if hasattr(g, 'msg') and g.msg:
msg = g.msg
break
next_path = path + [VirtualPathComponent(label)]
errors.append(er.InclusiveInvalid(msg, next_path))
break
if errors:
raise er.MultipleInvalid(errors)
out = data.__class__()
return base_validate(path, iteritems(data), out)
return validate_dict |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'to_list'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'length'}; {'id': '6', 'type': 'block', 'children': ['7', '37', '57', '72', '115']}, {'id': '7', 'type': 'if_statement', 'children': ['8', '11']}; {'id': '8', 'type': 'comparison_operator', 'children': ['9', '10'], 'value': 'is'}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'length'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'block', 'children': ['12']}; {'id': '12', 'type': 'if_statement', 'children': ['13', '19', '27']}, {'id': '13', 'type': 'not_operator', 'children': ['14']}; {'id': '14', 'type': 'call', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '16', 'type': 'argument_list', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'length'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '19', 'type': 'block', 'children': ['20']}; {'id': '20', 'type': 'raise_statement', 'children': ['21']}, {'id': '21', 'type': 'call', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'TypeError'}, {'id': '23', 'type': 'argument_list', 'children': ['24']}; {'id': '24', 'type': 'binary_operator', 'children': ['25', '26'], 'value': '%'}, {'id': '25', 'type': 'string', 'children': [], 'value': "'length must be an int, not %r'"}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'length'}, {'id': '27', 'type': 'elif_clause', 'children': ['28', '31']}; {'id': '28', 'type': 'comparison_operator', 'children': ['29', '30'], 'value': '<'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'length'}; {'id': '30', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '31', 'type': 'block', 'children': ['32']}; {'id': '32', 'type': 'raise_statement', 'children': ['33']}, {'id': '33', 'type': 'call', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '35', 'type': 'argument_list', 'children': ['36']}; {'id': '36', 'type': 'string', 'children': [], 'value': "'length must be non-negative'"}, {'id': '37', 'type': 'if_statement', 'children': ['38', '47']}; {'id': '38', 'type': 'binary_operator', 'children': ['39', '44'], 'value': '&'}, {'id': '39', 'type': 'call', 'children': ['40', '43']}; {'id': '40', 'type': 'attribute', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': '_query_flags'}, {'id': '43', 'type': 'argument_list', 'children': []}; {'id': '44', 'type': 'subscript', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': '_QUERY_OPTIONS'}; {'id': '46', 'type': 'string', 'children': [], 'value': "'tailable_cursor'"}, {'id': '47', 'type': 'block', 'children': ['48']}; {'id': '48', 'type': 'raise_statement', 'children': ['49']}, {'id': '49', 'type': 'call', 'children': ['50', '55']}; {'id': '50', 'type': 'attribute', 'children': ['51', '54']}, {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'pymongo'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'errors'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'InvalidOperation'}, {'id': '55', 'type': 'argument_list', 'children': ['56']}; {'id': '56', 'type': 'string', 'children': [], 'value': '"Can\'t call to_list on tailable cursor"'}, {'id': '57', 'type': 'expression_statement', 'children': ['58']}; {'id': '58', 'type': 'assignment', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'future'}; {'id': '60', 'type': 'call', 'children': ['61', '66']}, {'id': '61', 'type': 'attribute', 'children': ['62', '65']}; {'id': '62', 'type': 'attribute', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': '_framework'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'get_future'}; {'id': '66', 'type': 'argument_list', 'children': ['67']}, {'id': '67', 'type': 'call', 'children': ['68', '71']}; {'id': '68', 'type': 'attribute', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'get_io_loop'}, {'id': '71', 'type': 'argument_list', 'children': []}; {'id': '72', 'type': 'if_statement', 'children': ['73', '77', '85']}, {'id': '73', 'type': 'not_operator', 'children': ['74']}; {'id': '74', 'type': 'attribute', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'alive'}, {'id': '77', 'type': 'block', 'children': ['78']}; {'id': '78', 'type': 'expression_statement', 'children': ['79']}, {'id': '79', 'type': 'call', 'children': ['80', '83']}; {'id': '80', 'type': 'attribute', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'future'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'set_result'}, {'id': '83', 'type': 'argument_list', 'children': ['84']}; {'id': '84', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '85', 'type': 'else_clause', 'children': ['86']}; {'id': '86', 'type': 'block', 'children': ['87', '91']}, {'id': '87', 'type': 'expression_statement', 'children': ['88']}; {'id': '88', 'type': 'assignment', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'the_list'}; {'id': '90', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '91', 'type': 'expression_statement', 'children': ['92']}; {'id': '92', 'type': 'call', 'children': ['93', '98']}, {'id': '93', 'type': 'attribute', 'children': ['94', '97']}; {'id': '94', 'type': 'attribute', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': '_framework'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'add_future'}; {'id': '98', 'type': 'argument_list', 'children': ['99', '104', '109', '112', '113', '114']}, {'id': '99', 'type': 'call', 'children': ['100', '103']}; {'id': '100', 'type': 'attribute', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'get_io_loop'}, {'id': '103', 'type': 'argument_list', 'children': []}; {'id': '104', 'type': 'call', 'children': ['105', '108']}, {'id': '105', 'type': 'attribute', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': '_get_more'}; {'id': '108', 'type': 'argument_list', 'children': []}, {'id': '109', 'type': 'attribute', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': '_to_list'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'length'}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'the_list'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'future'}, {'id': '115', 'type': 'return_statement', 'children': ['116']} | def to_list(self, length):
if length is not None:
if not isinstance(length, int):
raise TypeError('length must be an int, not %r' % length)
elif length < 0:
raise ValueError('length must be non-negative')
if self._query_flags() & _QUERY_OPTIONS['tailable_cursor']:
raise pymongo.errors.InvalidOperation(
"Can't call to_list on tailable cursor")
future = self._framework.get_future(self.get_io_loop())
if not self.alive:
future.set_result([])
else:
the_list = []
self._framework.add_future(
self.get_io_loop(),
self._get_more(),
self._to_list, length, the_list, future)
return future |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'find'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'list_splat_pattern', 'children': ['6']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '7', 'type': 'dictionary_splat_pattern', 'children': ['8']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '9', 'type': 'block', 'children': ['10', '24', '37']}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}, {'id': '11', 'type': 'assignment', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'cursor'}, {'id': '13', 'type': 'call', 'children': ['14', '19']}; {'id': '14', 'type': 'attribute', 'children': ['15', '18']}, {'id': '15', 'type': 'attribute', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'delegate'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'find'}, {'id': '19', 'type': 'argument_list', 'children': ['20', '22']}; {'id': '20', 'type': 'list_splat', 'children': ['21']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '22', 'type': 'dictionary_splat', 'children': ['23']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}, {'id': '25', 'type': 'assignment', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'grid_out_cursor'}, {'id': '27', 'type': 'call', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'create_class_with_framework'}, {'id': '29', 'type': 'argument_list', 'children': ['30', '31', '34']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'AgnosticGridOutCursor'}, {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': '_framework'}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': '__module__'}, {'id': '37', 'type': 'return_statement', 'children': ['38']}; {'id': '38', 'type': 'call', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'grid_out_cursor'}; {'id': '40', 'type': 'argument_list', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'cursor'}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'self'} | def find(self, *args, **kwargs):
cursor = self.delegate.find(*args, **kwargs)
grid_out_cursor = create_class_with_framework(
AgnosticGridOutCursor, self._framework, self.__module__)
return grid_out_cursor(cursor, self.collection) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_serial_poller'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '199']}; {'id': '6', 'type': 'while_statement', 'children': ['7', '8']}, {'id': '7', 'type': 'True', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9', '23']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': '_next'}; {'id': '12', 'type': 'call', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'dict'}; {'id': '14', 'type': 'argument_list', 'children': ['15']}, {'id': '15', 'type': 'call', 'children': ['16', '21']}; {'id': '16', 'type': 'attribute', 'children': ['17', '20']}, {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': '_poller'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'poll'}, {'id': '21', 'type': 'argument_list', 'children': ['22']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'POLLING_FREQUENCY_MS'}, {'id': '23', 'type': 'if_statement', 'children': ['24', '33', '58', '102', '164']}; {'id': '24', 'type': 'comparison_operator', 'children': ['25', '32'], 'value': 'in'}, {'id': '25', 'type': 'call', 'children': ['26', '31']}; {'id': '26', 'type': 'attribute', 'children': ['27', '30']}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': '_halt_read_file'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'fileno'}, {'id': '31', 'type': 'argument_list', 'children': []}; {'id': '32', 'type': 'identifier', 'children': [], 'value': '_next'}, {'id': '33', 'type': 'block', 'children': ['34', '49', '57']}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}, {'id': '35', 'type': 'call', 'children': ['36', '39']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'debug'}, {'id': '39', 'type': 'argument_list', 'children': ['40']}; {'id': '40', 'type': 'call', 'children': ['41', '44']}, {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'string', 'children': [], 'value': '"Poller [{}]: halt"'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '44', 'type': 'argument_list', 'children': ['45']}, {'id': '45', 'type': 'call', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'hash'}, {'id': '47', 'type': 'argument_list', 'children': ['48']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'call', 'children': ['51', '56']}, {'id': '51', 'type': 'attribute', 'children': ['52', '55']}; {'id': '52', 'type': 'attribute', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': '_halt_read_file'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'read'}; {'id': '56', 'type': 'argument_list', 'children': []}, {'id': '57', 'type': 'break_statement', 'children': []}; {'id': '58', 'type': 'elif_clause', 'children': ['59', '68']}, {'id': '59', 'type': 'comparison_operator', 'children': ['60', '67'], 'value': 'in'}; {'id': '60', 'type': 'call', 'children': ['61', '66']}, {'id': '61', 'type': 'attribute', 'children': ['62', '65']}; {'id': '62', 'type': 'attribute', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': '_connection'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'fileno'}; {'id': '66', 'type': 'argument_list', 'children': []}, {'id': '67', 'type': 'identifier', 'children': [], 'value': '_next'}; {'id': '68', 'type': 'block', 'children': ['69', '84', '95']}, {'id': '69', 'type': 'expression_statement', 'children': ['70']}; {'id': '70', 'type': 'call', 'children': ['71', '74']}, {'id': '71', 'type': 'attribute', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'log'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'debug'}; {'id': '74', 'type': 'argument_list', 'children': ['75']}, {'id': '75', 'type': 'call', 'children': ['76', '79']}; {'id': '76', 'type': 'attribute', 'children': ['77', '78']}, {'id': '77', 'type': 'string', 'children': [], 'value': '"Poller [{}]: interrupt"'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '79', 'type': 'argument_list', 'children': ['80']}; {'id': '80', 'type': 'call', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'hash'}; {'id': '82', 'type': 'argument_list', 'children': ['83']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '84', 'type': 'expression_statement', 'children': ['85']}, {'id': '85', 'type': 'assignment', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'res'}, {'id': '87', 'type': 'call', 'children': ['88', '93']}; {'id': '88', 'type': 'attribute', 'children': ['89', '92']}, {'id': '89', 'type': 'attribute', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': '_connection'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'read_until'}, {'id': '93', 'type': 'argument_list', 'children': ['94']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'SERIAL_ACK'}, {'id': '95', 'type': 'expression_statement', 'children': ['96']}; {'id': '96', 'type': 'call', 'children': ['97', '100']}, {'id': '97', 'type': 'attribute', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': '_interrupt_callback'}; {'id': '100', 'type': 'argument_list', 'children': ['101']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'res'}; {'id': '102', 'type': 'elif_clause', 'children': ['103', '112']}, {'id': '103', 'type': 'comparison_operator', 'children': ['104', '111'], 'value': 'in'}; {'id': '104', 'type': 'call', 'children': ['105', '110']}, {'id': '105', 'type': 'attribute', 'children': ['106', '109']}; {'id': '106', 'type': 'attribute', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': '_send_read_file'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'fileno'}; {'id': '110', 'type': 'argument_list', 'children': []}, {'id': '111', 'type': 'identifier', 'children': [], 'value': '_next'}; {'id': '112', 'type': 'block', 'children': ['113', '122', '134', '150', '159']}, {'id': '113', 'type': 'expression_statement', 'children': ['114']}; {'id': '114', 'type': 'call', 'children': ['115', '120']}, {'id': '115', 'type': 'attribute', 'children': ['116', '119']}; {'id': '116', 'type': 'attribute', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': '_send_read_file'}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'read'}; {'id': '120', 'type': 'argument_list', 'children': ['121']}, {'id': '121', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '122', 'type': 'expression_statement', 'children': ['123']}, {'id': '123', 'type': 'assignment', 'children': ['124', '127']}; {'id': '124', 'type': 'pattern_list', 'children': ['125', '126']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'command'}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'callback'}, {'id': '127', 'type': 'call', 'children': ['128', '133']}; {'id': '128', 'type': 'attribute', 'children': ['129', '132']}, {'id': '129', 'type': 'attribute', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': '_command_queue'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '133', 'type': 'argument_list', 'children': []}; {'id': '134', 'type': 'expression_statement', 'children': ['135']}, {'id': '135', 'type': 'call', 'children': ['136', '139']}; {'id': '136', 'type': 'attribute', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'debug'}, {'id': '139', 'type': 'argument_list', 'children': ['140']}; {'id': '140', 'type': 'call', 'children': ['141', '144']}, {'id': '141', 'type': 'attribute', 'children': ['142', '143']}; {'id': '142', 'type': 'string', 'children': [], 'value': '"Poller [{}]: send {}"'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '144', 'type': 'argument_list', 'children': ['145', '149']}, {'id': '145', 'type': 'call', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'hash'}, {'id': '147', 'type': 'argument_list', 'children': ['148']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'command'}; {'id': '150', 'type': 'expression_statement', 'children': ['151']}, {'id': '151', 'type': 'assignment', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'res'}, {'id': '153', 'type': 'call', 'children': ['154', '157']}; {'id': '154', 'type': 'attribute', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '156', 'type': 'identifier', 'children': [], 'value': '_send_command'}, {'id': '157', 'type': 'argument_list', 'children': ['158']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'command'}, {'id': '159', 'type': 'expression_statement', 'children': ['160']}; {'id': '160', 'type': 'call', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'callback'}; {'id': '162', 'type': 'argument_list', 'children': ['163']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'res'}; {'id': '164', 'type': 'else_clause', 'children': ['165']}, {'id': '165', 'type': 'block', 'children': ['166', '181', '192']}; {'id': '166', 'type': 'expression_statement', 'children': ['167']}, {'id': '167', 'type': 'call', 'children': ['168', '171']}; {'id': '168', 'type': 'attribute', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'debug'}, {'id': '171', 'type': 'argument_list', 'children': ['172']}; {'id': '172', 'type': 'call', 'children': ['173', '176']}, {'id': '173', 'type': 'attribute', 'children': ['174', '175']}; {'id': '174', 'type': 'string', 'children': [], 'value': '"Poller [{}]: updating temp"'}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '176', 'type': 'argument_list', 'children': ['177']}, {'id': '177', 'type': 'call', 'children': ['178', '179']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'hash'}, {'id': '179', 'type': 'argument_list', 'children': ['180']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '181', 'type': 'expression_statement', 'children': ['182']}; {'id': '182', 'type': 'assignment', 'children': ['183', '184']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'res'}; {'id': '184', 'type': 'call', 'children': ['185', '188']}, {'id': '185', 'type': 'attribute', 'children': ['186', '187']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': '_send_command'}; {'id': '188', 'type': 'argument_list', 'children': ['189']}, {'id': '189', 'type': 'subscript', 'children': ['190', '191']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'GCODES'}, {'id': '191', 'type': 'string', 'children': [], 'value': "'GET_PLATE_TEMP'"}; {'id': '192', 'type': 'expression_statement', 'children': ['193']}, {'id': '193', 'type': 'call', 'children': ['194', '197']}; {'id': '194', 'type': 'attribute', 'children': ['195', '196']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '196', 'type': 'identifier', 'children': [], 'value': '_status_callback'}, {'id': '197', 'type': 'argument_list', 'children': ['198']}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'res'}, {'id': '199', 'type': 'expression_statement', 'children': ['200']}; {'id': '200', 'type': 'call', 'children': ['201', '204']}, {'id': '201', 'type': 'attribute', 'children': ['202', '203']}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'log'}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'info'}; {'id': '204', 'type': 'argument_list', 'children': ['205']}, {'id': '205', 'type': 'call', 'children': ['206', '209']}; {'id': '206', 'type': 'attribute', 'children': ['207', '208']}, {'id': '207', 'type': 'string', 'children': [], 'value': '"Exiting TC poller loop [{}]"'}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '209', 'type': 'argument_list', 'children': ['210']}; {'id': '210', 'type': 'call', 'children': ['211', '212']}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'hash'}; {'id': '212', 'type': 'argument_list', 'children': ['213']}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'self'} | def _serial_poller(self):
while True:
_next = dict(self._poller.poll(POLLING_FREQUENCY_MS))
if self._halt_read_file.fileno() in _next:
log.debug("Poller [{}]: halt".format(hash(self)))
self._halt_read_file.read()
break
elif self._connection.fileno() in _next:
log.debug("Poller [{}]: interrupt".format(hash(self)))
res = self._connection.read_until(SERIAL_ACK)
self._interrupt_callback(res)
elif self._send_read_file.fileno() in _next:
self._send_read_file.read(1)
command, callback = self._command_queue.get()
log.debug("Poller [{}]: send {}".format(hash(self), command))
res = self._send_command(command)
callback(res)
else:
log.debug("Poller [{}]: updating temp".format(hash(self)))
res = self._send_command(GCODES['GET_PLATE_TEMP'])
self._status_callback(res)
log.info("Exiting TC poller loop [{}]".format(hash(self))) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '11']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'enqueue_at'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '9']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'scheduled_time'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'func'}, {'id': '7', 'type': 'list_splat_pattern', 'children': ['8']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '9', 'type': 'dictionary_splat_pattern', 'children': ['10']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '11', 'type': 'block', 'children': ['12', '22', '32', '42', '52', '62', '72', '105', '125']}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}, {'id': '13', 'type': 'assignment', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'timeout'}, {'id': '15', 'type': 'call', 'children': ['16', '19']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'pop'}, {'id': '19', 'type': 'argument_list', 'children': ['20', '21']}; {'id': '20', 'type': 'string', 'children': [], 'value': "'timeout'"}, {'id': '21', 'type': 'None', 'children': []}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}, {'id': '23', 'type': 'assignment', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'job_id'}, {'id': '25', 'type': 'call', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'pop'}, {'id': '29', 'type': 'argument_list', 'children': ['30', '31']}; {'id': '30', 'type': 'string', 'children': [], 'value': "'job_id'"}, {'id': '31', 'type': 'None', 'children': []}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}, {'id': '33', 'type': 'assignment', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'job_ttl'}, {'id': '35', 'type': 'call', 'children': ['36', '39']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'pop'}, {'id': '39', 'type': 'argument_list', 'children': ['40', '41']}; {'id': '40', 'type': 'string', 'children': [], 'value': "'job_ttl'"}, {'id': '41', 'type': 'None', 'children': []}; {'id': '42', 'type': 'expression_statement', 'children': ['43']}, {'id': '43', 'type': 'assignment', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'job_result_ttl'}, {'id': '45', 'type': 'call', 'children': ['46', '49']}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'pop'}, {'id': '49', 'type': 'argument_list', 'children': ['50', '51']}; {'id': '50', 'type': 'string', 'children': [], 'value': "'job_result_ttl'"}, {'id': '51', 'type': 'None', 'children': []}; {'id': '52', 'type': 'expression_statement', 'children': ['53']}, {'id': '53', 'type': 'assignment', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'job_description'}, {'id': '55', 'type': 'call', 'children': ['56', '59']}; {'id': '56', 'type': 'attribute', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'pop'}, {'id': '59', 'type': 'argument_list', 'children': ['60', '61']}; {'id': '60', 'type': 'string', 'children': [], 'value': "'job_description'"}, {'id': '61', 'type': 'None', 'children': []}; {'id': '62', 'type': 'expression_statement', 'children': ['63']}, {'id': '63', 'type': 'assignment', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'meta'}, {'id': '65', 'type': 'call', 'children': ['66', '69']}; {'id': '66', 'type': 'attribute', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'pop'}, {'id': '69', 'type': 'argument_list', 'children': ['70', '71']}; {'id': '70', 'type': 'string', 'children': [], 'value': "'meta'"}, {'id': '71', 'type': 'None', 'children': []}; {'id': '72', 'type': 'expression_statement', 'children': ['73']}, {'id': '73', 'type': 'assignment', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'job'}, {'id': '75', 'type': 'call', 'children': ['76', '79']}; {'id': '76', 'type': 'attribute', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': '_create_job'}, {'id': '79', 'type': 'argument_list', 'children': ['80', '81', '84', '87', '90', '93', '96', '99', '102']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'func'}, {'id': '81', 'type': 'keyword_argument', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '84', 'type': 'keyword_argument', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'kwargs'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'kwargs'}, {'id': '87', 'type': 'keyword_argument', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'timeout'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'timeout'}; {'id': '90', 'type': 'keyword_argument', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'job_id'}, {'id': '93', 'type': 'keyword_argument', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'result_ttl'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'job_result_ttl'}; {'id': '96', 'type': 'keyword_argument', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'ttl'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'job_ttl'}, {'id': '99', 'type': 'keyword_argument', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'description'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'job_description'}; {'id': '102', 'type': 'keyword_argument', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'meta'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'meta'}, {'id': '105', 'type': 'expression_statement', 'children': ['106']}; {'id': '106', 'type': 'call', 'children': ['107', '112']}, {'id': '107', 'type': 'attribute', 'children': ['108', '111']}; {'id': '108', 'type': 'attribute', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'connection'}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'zadd'}; {'id': '112', 'type': 'argument_list', 'children': ['113', '116']}, {'id': '113', 'type': 'attribute', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'scheduled_jobs_key'}; {'id': '116', 'type': 'dictionary', 'children': ['117']}, {'id': '117', 'type': 'pair', 'children': ['118', '121']}; {'id': '118', 'type': 'attribute', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'job'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'id'}, {'id': '121', 'type': 'call', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'to_unix'}, {'id': '123', 'type': 'argument_list', 'children': ['124']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'scheduled_time'}, {'id': '125', 'type': 'return_statement', 'children': ['126']} | def enqueue_at(self, scheduled_time, func, *args, **kwargs):
timeout = kwargs.pop('timeout', None)
job_id = kwargs.pop('job_id', None)
job_ttl = kwargs.pop('job_ttl', None)
job_result_ttl = kwargs.pop('job_result_ttl', None)
job_description = kwargs.pop('job_description', None)
meta = kwargs.pop('meta', None)
job = self._create_job(func, args=args, kwargs=kwargs, timeout=timeout,
id=job_id, result_ttl=job_result_ttl, ttl=job_ttl,
description=job_description, meta=meta)
self.connection.zadd(self.scheduled_jobs_key,
{job.id: to_unix(scheduled_time)})
return job |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_getMostActiveCells'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '12', '27', '40', '57', '68', '104']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'poolingActivation'}, {'id': '9', 'type': 'attribute', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '11', 'type': 'identifier', 'children': [], 'value': '_poolingActivation'}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}, {'id': '13', 'type': 'assignment', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'nonZeroCells'}, {'id': '15', 'type': 'subscript', 'children': ['16', '24', '26']}; {'id': '16', 'type': 'call', 'children': ['17', '20']}, {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'numpy'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'argwhere'}; {'id': '20', 'type': 'argument_list', 'children': ['21']}, {'id': '21', 'type': 'comparison_operator', 'children': ['22', '23'], 'value': '>'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'poolingActivation'}, {'id': '23', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '24', 'type': 'slice', 'children': ['25']}, {'id': '25', 'type': 'colon', 'children': []}; {'id': '26', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'assignment', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'poolingActivationSubset'}; {'id': '30', 'type': 'binary_operator', 'children': ['31', '34', '35'], 'value': '+'}, {'id': '31', 'type': 'subscript', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'poolingActivation'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'nonZeroCells'}; {'id': '34', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '35', 'type': 'subscript', 'children': ['36', '39']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': '_poolingActivation_tieBreaker'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'nonZeroCells'}; {'id': '40', 'type': 'expression_statement', 'children': ['41']}, {'id': '41', 'type': 'assignment', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'potentialUnionSDR'}, {'id': '43', 'type': 'subscript', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'nonZeroCells'}, {'id': '45', 'type': 'subscript', 'children': ['46', '52']}; {'id': '46', 'type': 'call', 'children': ['47', '50']}, {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'numpy'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'argsort'}; {'id': '50', 'type': 'argument_list', 'children': ['51']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'poolingActivationSubset'}; {'id': '52', 'type': 'slice', 'children': ['53', '54', '55']}, {'id': '53', 'type': 'colon', 'children': []}; {'id': '54', 'type': 'colon', 'children': []}, {'id': '55', 'type': 'unary_operator', 'children': ['56'], 'value': '-'}; {'id': '56', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '57', 'type': 'expression_statement', 'children': ['58']}; {'id': '58', 'type': 'assignment', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'topCells'}; {'id': '60', 'type': 'subscript', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'potentialUnionSDR'}; {'id': '62', 'type': 'slice', 'children': ['63', '64', '65']}, {'id': '63', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '64', 'type': 'colon', 'children': []}, {'id': '65', 'type': 'attribute', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': '_maxUnionCells'}; {'id': '68', 'type': 'if_statement', 'children': ['69', '79', '96']}, {'id': '69', 'type': 'comparison_operator', 'children': ['70', '76'], 'value': '>'}; {'id': '70', 'type': 'call', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'max'}; {'id': '72', 'type': 'argument_list', 'children': ['73']}, {'id': '73', 'type': 'attribute', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': '_poolingTimer'}; {'id': '76', 'type': 'attribute', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': '_minHistory'}, {'id': '79', 'type': 'block', 'children': ['80']}; {'id': '80', 'type': 'expression_statement', 'children': ['81']}, {'id': '81', 'type': 'assignment', 'children': ['82', '85']}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': '_unionSDR'}, {'id': '85', 'type': 'call', 'children': ['86', '94']}; {'id': '86', 'type': 'attribute', 'children': ['87', '93']}, {'id': '87', 'type': 'call', 'children': ['88', '91']}; {'id': '88', 'type': 'attribute', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'numpy'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '91', 'type': 'argument_list', 'children': ['92']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'topCells'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'astype'}; {'id': '94', 'type': 'argument_list', 'children': ['95']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'UINT_DTYPE'}; {'id': '96', 'type': 'else_clause', 'children': ['97']}, {'id': '97', 'type': 'block', 'children': ['98']}; {'id': '98', 'type': 'expression_statement', 'children': ['99']}, {'id': '99', 'type': 'assignment', 'children': ['100', '103']}; {'id': '100', 'type': 'attribute', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': '_unionSDR'}, {'id': '103', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '104', 'type': 'return_statement', 'children': ['105']}, {'id': '105', 'type': 'attribute', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': '_unionSDR'} | def _getMostActiveCells(self):
poolingActivation = self._poolingActivation
nonZeroCells = numpy.argwhere(poolingActivation > 0)[:,0]
poolingActivationSubset = poolingActivation[nonZeroCells] + \
self._poolingActivation_tieBreaker[nonZeroCells]
potentialUnionSDR = nonZeroCells[numpy.argsort(poolingActivationSubset)[::-1]]
topCells = potentialUnionSDR[0: self._maxUnionCells]
if max(self._poolingTimer) > self._minHistory:
self._unionSDR = numpy.sort(topCells).astype(UINT_DTYPE)
else:
self._unionSDR = []
return self._unionSDR |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'printNetwork'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'network'}, {'id': '5', 'type': 'block', 'children': ['6', '19']}; {'id': '6', 'type': 'print_statement', 'children': ['7', '8', '18']}, {'id': '7', 'type': 'string', 'children': [], 'value': '"The network has"'}; {'id': '8', 'type': 'call', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '10', 'type': 'argument_list', 'children': ['11']}, {'id': '11', 'type': 'call', 'children': ['12', '17']}; {'id': '12', 'type': 'attribute', 'children': ['13', '16']}, {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'network'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'regions'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'values'}, {'id': '17', 'type': 'argument_list', 'children': []}; {'id': '18', 'type': 'string', 'children': [], 'value': '"regions"'}, {'id': '19', 'type': 'for_statement', 'children': ['20', '21', '29']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '21', 'type': 'call', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'range'}, {'id': '23', 'type': 'argument_list', 'children': ['24']}; {'id': '24', 'type': 'call', 'children': ['25', '28']}, {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'network'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'getMaxPhase'}; {'id': '28', 'type': 'argument_list', 'children': []}, {'id': '29', 'type': 'block', 'children': ['30', '33']}; {'id': '30', 'type': 'print_statement', 'children': ['31', '32']}, {'id': '31', 'type': 'string', 'children': [], 'value': '"=== Phase"'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '33', 'type': 'for_statement', 'children': ['34', '35', '42']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'region'}, {'id': '35', 'type': 'call', 'children': ['36', '41']}; {'id': '36', 'type': 'attribute', 'children': ['37', '40']}, {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'network'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'regions'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'values'}, {'id': '41', 'type': 'argument_list', 'children': []}; {'id': '42', 'type': 'block', 'children': ['43']}, {'id': '43', 'type': 'if_statement', 'children': ['44', '56']}; {'id': '44', 'type': 'comparison_operator', 'children': ['45', '55'], 'value': '=='}, {'id': '45', 'type': 'subscript', 'children': ['46', '54']}; {'id': '46', 'type': 'call', 'children': ['47', '50']}, {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'network'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'getPhases'}; {'id': '50', 'type': 'argument_list', 'children': ['51']}, {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'region'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '54', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '56', 'type': 'block', 'children': ['57']}, {'id': '57', 'type': 'print_statement', 'children': ['58', '59']}; {'id': '58', 'type': 'string', 'children': [], 'value': '" "'}, {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'region'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'name'} | def printNetwork(network):
print "The network has",len(network.regions.values()),"regions"
for p in range(network.getMaxPhase()):
print "=== Phase",p
for region in network.regions.values():
if network.getPhases(region.name)[0] == p:
print " ",region.name |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'argmaxMulti'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'a'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'groupKeys'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'assumeSorted'}; {'id': '8', 'type': 'False', 'children': []}, {'id': '9', 'type': 'block', 'children': ['10', '38', '56', '68', '85', '97']}; {'id': '10', 'type': 'if_statement', 'children': ['11', '13']}, {'id': '11', 'type': 'not_operator', 'children': ['12']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'assumeSorted'}, {'id': '13', 'type': 'block', 'children': ['14', '26', '32']}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}, {'id': '15', 'type': 'assignment', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'sorter'}, {'id': '17', 'type': 'call', 'children': ['18', '21']}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'argsort'}, {'id': '21', 'type': 'argument_list', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'groupKeys'}, {'id': '23', 'type': 'keyword_argument', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'kind'}, {'id': '25', 'type': 'string', 'children': [], 'value': '"mergesort"'}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}, {'id': '27', 'type': 'assignment', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'a'}, {'id': '29', 'type': 'subscript', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'a'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'sorter'}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}, {'id': '33', 'type': 'assignment', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'groupKeys'}, {'id': '35', 'type': 'subscript', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'groupKeys'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'sorter'}; {'id': '38', 'type': 'expression_statement', 'children': ['39']}, {'id': '39', 'type': 'assignment', 'children': ['40', '44']}; {'id': '40', 'type': 'pattern_list', 'children': ['41', '42', '43']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': '_'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'indices'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'lengths'}; {'id': '44', 'type': 'call', 'children': ['45', '48']}, {'id': '45', 'type': 'attribute', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'unique'}; {'id': '48', 'type': 'argument_list', 'children': ['49', '50', '53']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'groupKeys'}; {'id': '50', 'type': 'keyword_argument', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'return_index'}; {'id': '52', 'type': 'True', 'children': []}, {'id': '53', 'type': 'keyword_argument', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'return_counts'}, {'id': '55', 'type': 'True', 'children': []}; {'id': '56', 'type': 'expression_statement', 'children': ['57']}, {'id': '57', 'type': 'assignment', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'maxValues'}, {'id': '59', 'type': 'call', 'children': ['60', '65']}; {'id': '60', 'type': 'attribute', 'children': ['61', '64']}, {'id': '61', 'type': 'attribute', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'maximum'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'reduceat'}, {'id': '65', 'type': 'argument_list', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'a'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'indices'}; {'id': '68', 'type': 'expression_statement', 'children': ['69']}, {'id': '69', 'type': 'assignment', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'allMaxIndices'}, {'id': '71', 'type': 'call', 'children': ['72', '75']}; {'id': '72', 'type': 'attribute', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'flatnonzero'}, {'id': '75', 'type': 'argument_list', 'children': ['76']}; {'id': '76', 'type': 'comparison_operator', 'children': ['77', '84'], 'value': '=='}, {'id': '77', 'type': 'call', 'children': ['78', '81']}; {'id': '78', 'type': 'attribute', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'repeat'}, {'id': '81', 'type': 'argument_list', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'maxValues'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'lengths'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'a'}, {'id': '85', 'type': 'expression_statement', 'children': ['86']}; {'id': '86', 'type': 'assignment', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'indices'}; {'id': '88', 'type': 'subscript', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'allMaxIndices'}; {'id': '90', 'type': 'call', 'children': ['91', '94']}, {'id': '91', 'type': 'attribute', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'searchsorted'}; {'id': '94', 'type': 'argument_list', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'allMaxIndices'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'indices'}, {'id': '97', 'type': 'if_statement', 'children': ['98', '99', '102']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'assumeSorted'}, {'id': '99', 'type': 'block', 'children': ['100']}; {'id': '100', 'type': 'return_statement', 'children': ['101']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'indices'}; {'id': '102', 'type': 'else_clause', 'children': ['103']}, {'id': '103', 'type': 'block', 'children': ['104']}; {'id': '104', 'type': 'return_statement', 'children': ['105']}, {'id': '105', 'type': 'subscript', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'sorter'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'indices'} | def argmaxMulti(a, groupKeys, assumeSorted=False):
if not assumeSorted:
sorter = np.argsort(groupKeys, kind="mergesort")
a = a[sorter]
groupKeys = groupKeys[sorter]
_, indices, lengths = np.unique(groupKeys, return_index=True,
return_counts=True)
maxValues = np.maximum.reduceat(a, indices)
allMaxIndices = np.flatnonzero(np.repeat(maxValues, lengths) == a)
indices = allMaxIndices[np.searchsorted(allMaxIndices, indices)]
if assumeSorted:
return indices
else:
return sorter[indices] |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'getAllCellsInColumns'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'columns'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'cellsPerColumn'}; {'id': '6', 'type': 'block', 'children': ['7']}, {'id': '7', 'type': 'return_statement', 'children': ['8']}; {'id': '8', 'type': 'call', 'children': ['9', '34']}, {'id': '9', 'type': 'attribute', 'children': ['10', '33']}; {'id': '10', 'type': 'parenthesized_expression', 'children': ['11']}, {'id': '11', 'type': 'binary_operator', 'children': ['12', '24'], 'value': '+'}; {'id': '12', 'type': 'call', 'children': ['13', '19']}, {'id': '13', 'type': 'attribute', 'children': ['14', '18']}; {'id': '14', 'type': 'parenthesized_expression', 'children': ['15']}, {'id': '15', 'type': 'binary_operator', 'children': ['16', '17'], 'value': '*'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'columns'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'cellsPerColumn'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'reshape'}, {'id': '19', 'type': 'argument_list', 'children': ['20']}; {'id': '20', 'type': 'tuple', 'children': ['21', '23']}, {'id': '21', 'type': 'unary_operator', 'children': ['22'], 'value': '-'}; {'id': '22', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '23', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '24', 'type': 'call', 'children': ['25', '28']}, {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'arange'}; {'id': '28', 'type': 'argument_list', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'cellsPerColumn'}; {'id': '30', 'type': 'keyword_argument', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'dtype'}; {'id': '32', 'type': 'string', 'children': [], 'value': '"uint32"'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'flatten'} | def getAllCellsInColumns(columns, cellsPerColumn):
return ((columns * cellsPerColumn).reshape((-1, 1)) +
np.arange(cellsPerColumn, dtype="uint32")).flatten() |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'shuffle_sparse_matrix_and_labels'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'matrix'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'labels'}; {'id': '6', 'type': 'block', 'children': ['7', '9', '17', '27', '36', '45', '54', '56']}, {'id': '7', 'type': 'print_statement', 'children': ['8']}; {'id': '8', 'type': 'string', 'children': [], 'value': '"Shuffling data"'}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'new_matrix'}; {'id': '12', 'type': 'call', 'children': ['13', '16']}, {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'matrix'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'toDense'}; {'id': '16', 'type': 'argument_list', 'children': []}, {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'assignment', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'rng_state'}; {'id': '20', 'type': 'call', 'children': ['21', '26']}, {'id': '21', 'type': 'attribute', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'numpy'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'random'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'get_state'}; {'id': '26', 'type': 'argument_list', 'children': []}, {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'call', 'children': ['29', '34']}, {'id': '29', 'type': 'attribute', 'children': ['30', '33']}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'numpy'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'random'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'shuffle'}; {'id': '34', 'type': 'argument_list', 'children': ['35']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'new_matrix'}; {'id': '36', 'type': 'expression_statement', 'children': ['37']}, {'id': '37', 'type': 'call', 'children': ['38', '43']}; {'id': '38', 'type': 'attribute', 'children': ['39', '42']}, {'id': '39', 'type': 'attribute', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'numpy'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'random'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'set_state'}, {'id': '43', 'type': 'argument_list', 'children': ['44']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'rng_state'}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'call', 'children': ['47', '52']}, {'id': '47', 'type': 'attribute', 'children': ['48', '51']}; {'id': '48', 'type': 'attribute', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'numpy'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'random'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'shuffle'}; {'id': '52', 'type': 'argument_list', 'children': ['53']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'labels'}; {'id': '54', 'type': 'print_statement', 'children': ['55']}, {'id': '55', 'type': 'string', 'children': [], 'value': '"Data shuffled"'}; {'id': '56', 'type': 'return_statement', 'children': ['57']}, {'id': '57', 'type': 'expression_list', 'children': ['58', '62']}; {'id': '58', 'type': 'call', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'SM32'}; {'id': '60', 'type': 'argument_list', 'children': ['61']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'new_matrix'}; {'id': '62', 'type': 'call', 'children': ['63', '66']}, {'id': '63', 'type': 'attribute', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'numpy'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'asarray'}; {'id': '66', 'type': 'argument_list', 'children': ['67']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'labels'} | def shuffle_sparse_matrix_and_labels(matrix, labels):
print "Shuffling data"
new_matrix = matrix.toDense()
rng_state = numpy.random.get_state()
numpy.random.shuffle(new_matrix)
numpy.random.set_state(rng_state)
numpy.random.shuffle(labels)
print "Data shuffled"
return SM32(new_matrix), numpy.asarray(labels) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'compute'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'sensorToBodyByColumn'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'sensorToSpecificObjectByColumn'}, {'id': '7', 'type': 'block', 'children': ['8', '22', '28', '103', '121', '135', '150']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}, {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'votesByCell'}, {'id': '11', 'type': 'call', 'children': ['12', '15']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'zeros'}, {'id': '15', 'type': 'argument_list', 'children': ['16', '19']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'cellCount'}, {'id': '19', 'type': 'keyword_argument', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'dtype'}, {'id': '21', 'type': 'string', 'children': [], 'value': '"int"'}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}, {'id': '23', 'type': 'assignment', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'activeSegmentsByColumn'}, {'id': '27', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '28', 'type': 'for_statement', 'children': ['29', '33', '41']}, {'id': '29', 'type': 'tuple_pattern', 'children': ['30', '31', '32']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'connections'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'activeSensorToBodyCells'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'activeSensorToSpecificObjectCells'}, {'id': '33', 'type': 'call', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'zip'}, {'id': '35', 'type': 'argument_list', 'children': ['36', '39', '40']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'connectionsByColumn'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'sensorToBodyByColumn'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'sensorToSpecificObjectByColumn'}, {'id': '41', 'type': 'block', 'children': ['42', '57', '70', '79', '88', '94']}; {'id': '42', 'type': 'expression_statement', 'children': ['43']}, {'id': '43', 'type': 'assignment', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'overlaps'}, {'id': '45', 'type': 'call', 'children': ['46', '49']}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'connections'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'computeActivity'}, {'id': '49', 'type': 'argument_list', 'children': ['50']}; {'id': '50', 'type': 'dictionary', 'children': ['51', '54']}, {'id': '51', 'type': 'pair', 'children': ['52', '53']}; {'id': '52', 'type': 'string', 'children': [], 'value': '"sensorToBody"'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'activeSensorToBodyCells'}; {'id': '54', 'type': 'pair', 'children': ['55', '56']}, {'id': '55', 'type': 'string', 'children': [], 'value': '"sensorToSpecificObject"'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'activeSensorToSpecificObjectCells'}, {'id': '57', 'type': 'expression_statement', 'children': ['58']}; {'id': '58', 'type': 'assignment', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'activeSegments'}; {'id': '60', 'type': 'subscript', 'children': ['61', '69']}, {'id': '61', 'type': 'call', 'children': ['62', '65']}; {'id': '62', 'type': 'attribute', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'where'}, {'id': '65', 'type': 'argument_list', 'children': ['66']}; {'id': '66', 'type': 'comparison_operator', 'children': ['67', '68'], 'value': '>='}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'overlaps'}; {'id': '68', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '69', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '70', 'type': 'expression_statement', 'children': ['71']}, {'id': '71', 'type': 'assignment', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'votes'}, {'id': '73', 'type': 'call', 'children': ['74', '77']}; {'id': '74', 'type': 'attribute', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'connections'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'mapSegmentsToCells'}, {'id': '77', 'type': 'argument_list', 'children': ['78']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'activeSegments'}, {'id': '79', 'type': 'expression_statement', 'children': ['80']}; {'id': '80', 'type': 'assignment', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'votes'}; {'id': '82', 'type': 'call', 'children': ['83', '86']}, {'id': '83', 'type': 'attribute', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'unique'}; {'id': '86', 'type': 'argument_list', 'children': ['87']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'votes'}; {'id': '88', 'type': 'expression_statement', 'children': ['89']}, {'id': '89', 'type': 'augmented_assignment', 'children': ['90', '93'], 'value': '+='}; {'id': '90', 'type': 'subscript', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'votesByCell'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'votes'}, {'id': '93', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '94', 'type': 'expression_statement', 'children': ['95']}, {'id': '95', 'type': 'call', 'children': ['96', '101']}; {'id': '96', 'type': 'attribute', 'children': ['97', '100']}, {'id': '97', 'type': 'attribute', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'activeSegmentsByColumn'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '101', 'type': 'argument_list', 'children': ['102']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'activeSegments'}, {'id': '103', 'type': 'expression_statement', 'children': ['104']}; {'id': '104', 'type': 'assignment', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'candidates'}; {'id': '106', 'type': 'subscript', 'children': ['107', '120']}, {'id': '107', 'type': 'call', 'children': ['108', '111']}; {'id': '108', 'type': 'attribute', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'where'}, {'id': '111', 'type': 'argument_list', 'children': ['112']}; {'id': '112', 'type': 'comparison_operator', 'children': ['113', '114'], 'value': '=='}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'votesByCell'}; {'id': '114', 'type': 'call', 'children': ['115', '118']}, {'id': '115', 'type': 'attribute', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'max'}; {'id': '118', 'type': 'argument_list', 'children': ['119']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'votesByCell'}; {'id': '120', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '121', 'type': 'expression_statement', 'children': ['122']}; {'id': '122', 'type': 'assignment', 'children': ['123', '126']}, {'id': '123', 'type': 'attribute', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'activeCells'}; {'id': '126', 'type': 'call', 'children': ['127', '130']}, {'id': '127', 'type': 'attribute', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'intersect1d'}; {'id': '130', 'type': 'argument_list', 'children': ['131', '134']}, {'id': '131', 'type': 'attribute', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'activeCells'}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'candidates'}, {'id': '135', 'type': 'if_statement', 'children': ['136', '143']}; {'id': '136', 'type': 'comparison_operator', 'children': ['137', '142'], 'value': '=='}, {'id': '137', 'type': 'attribute', 'children': ['138', '141']}; {'id': '138', 'type': 'attribute', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'activeCells'}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'size'}; {'id': '142', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '143', 'type': 'block', 'children': ['144']}; {'id': '144', 'type': 'expression_statement', 'children': ['145']}, {'id': '145', 'type': 'assignment', 'children': ['146', '149']}; {'id': '146', 'type': 'attribute', 'children': ['147', '148']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'activeCells'}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'candidates'}; {'id': '150', 'type': 'expression_statement', 'children': ['151']}, {'id': '151', 'type': 'assignment', 'children': ['152', '155']}; {'id': '152', 'type': 'attribute', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'inhibitedCells'}, {'id': '155', 'type': 'call', 'children': ['156', '159']}; {'id': '156', 'type': 'attribute', 'children': ['157', '158']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'setdiff1d'}, {'id': '159', 'type': 'argument_list', 'children': ['160', '170']}; {'id': '160', 'type': 'subscript', 'children': ['161', '169']}, {'id': '161', 'type': 'call', 'children': ['162', '165']}; {'id': '162', 'type': 'attribute', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'where'}, {'id': '165', 'type': 'argument_list', 'children': ['166']}; {'id': '166', 'type': 'comparison_operator', 'children': ['167', '168'], 'value': '>'}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'votesByCell'}; {'id': '168', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '169', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '170', 'type': 'attribute', 'children': ['171', '172']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'self'} | def compute(self, sensorToBodyByColumn, sensorToSpecificObjectByColumn):
votesByCell = np.zeros(self.cellCount, dtype="int")
self.activeSegmentsByColumn = []
for (connections,
activeSensorToBodyCells,
activeSensorToSpecificObjectCells) in zip(self.connectionsByColumn,
sensorToBodyByColumn,
sensorToSpecificObjectByColumn):
overlaps = connections.computeActivity({
"sensorToBody": activeSensorToBodyCells,
"sensorToSpecificObject": activeSensorToSpecificObjectCells,
})
activeSegments = np.where(overlaps >= 2)[0]
votes = connections.mapSegmentsToCells(activeSegments)
votes = np.unique(votes)
votesByCell[votes] += 1
self.activeSegmentsByColumn.append(activeSegments)
candidates = np.where(votesByCell == np.max(votesByCell))[0]
self.activeCells = np.intersect1d(self.activeCells, candidates)
if self.activeCells.size == 0:
self.activeCells = candidates
self.inhibitedCells = np.setdiff1d(np.where(votesByCell > 0)[0],
self.activeCells) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'metricCompute'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'sensorToBody'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'bodyToSpecificObject'}, {'id': '7', 'type': 'block', 'children': ['8', '25', '40']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}, {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'overlaps'}, {'id': '11', 'type': 'call', 'children': ['12', '17']}; {'id': '12', 'type': 'attribute', 'children': ['13', '16']}, {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'metricConnections'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'computeActivity'}, {'id': '17', 'type': 'argument_list', 'children': ['18']}; {'id': '18', 'type': 'dictionary', 'children': ['19', '22']}, {'id': '19', 'type': 'pair', 'children': ['20', '21']}; {'id': '20', 'type': 'string', 'children': [], 'value': '"bodyToSpecificObject"'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'bodyToSpecificObject'}; {'id': '22', 'type': 'pair', 'children': ['23', '24']}, {'id': '23', 'type': 'string', 'children': [], 'value': '"sensorToBody"'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'sensorToBody'}, {'id': '25', 'type': 'expression_statement', 'children': ['26']}; {'id': '26', 'type': 'assignment', 'children': ['27', '30']}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'activeMetricSegments'}; {'id': '30', 'type': 'subscript', 'children': ['31', '39']}, {'id': '31', 'type': 'call', 'children': ['32', '35']}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'where'}, {'id': '35', 'type': 'argument_list', 'children': ['36']}; {'id': '36', 'type': 'comparison_operator', 'children': ['37', '38'], 'value': '>='}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'overlaps'}; {'id': '38', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '39', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '40', 'type': 'expression_statement', 'children': ['41']}, {'id': '41', 'type': 'assignment', 'children': ['42', '45']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'activeCells'}, {'id': '45', 'type': 'call', 'children': ['46', '49']}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'unique'}, {'id': '49', 'type': 'argument_list', 'children': ['50']}; {'id': '50', 'type': 'call', 'children': ['51', '56']}, {'id': '51', 'type': 'attribute', 'children': ['52', '55']}; {'id': '52', 'type': 'attribute', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'metricConnections'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'mapSegmentsToCells'}; {'id': '56', 'type': 'argument_list', 'children': ['57']}, {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'activeMetricSegments'} | def metricCompute(self, sensorToBody, bodyToSpecificObject):
overlaps = self.metricConnections.computeActivity({
"bodyToSpecificObject": bodyToSpecificObject,
"sensorToBody": sensorToBody,
})
self.activeMetricSegments = np.where(overlaps >= 2)[0]
self.activeCells = np.unique(
self.metricConnections.mapSegmentsToCells(
self.activeMetricSegments)) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '20']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'compute'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'feedforwardInput'}, {'id': '7', 'type': 'tuple', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'lateralInputs'}; {'id': '10', 'type': 'tuple', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'feedforwardGrowthCandidates'}, {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'learn'}; {'id': '16', 'type': 'True', 'children': []}, {'id': '17', 'type': 'default_parameter', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'predictedInput'}, {'id': '19', 'type': 'None', 'children': []}; {'id': '20', 'type': 'block', 'children': ['21', '30']}, {'id': '21', 'type': 'if_statement', 'children': ['22', '25']}; {'id': '22', 'type': 'comparison_operator', 'children': ['23', '24'], 'value': 'is'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'feedforwardGrowthCandidates'}; {'id': '24', 'type': 'None', 'children': []}, {'id': '25', 'type': 'block', 'children': ['26']}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}, {'id': '27', 'type': 'assignment', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'feedforwardGrowthCandidates'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'feedforwardInput'}; {'id': '30', 'type': 'if_statement', 'children': ['31', '33', '42', '57']}, {'id': '31', 'type': 'not_operator', 'children': ['32']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'learn'}, {'id': '33', 'type': 'block', 'children': ['34']}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}, {'id': '35', 'type': 'call', 'children': ['36', '39']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': '_computeInferenceMode'}, {'id': '39', 'type': 'argument_list', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'feedforwardInput'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'lateralInputs'}; {'id': '42', 'type': 'elif_clause', 'children': ['43', '47']}, {'id': '43', 'type': 'not_operator', 'children': ['44']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'onlineLearning'}, {'id': '47', 'type': 'block', 'children': ['48']}; {'id': '48', 'type': 'expression_statement', 'children': ['49']}, {'id': '49', 'type': 'call', 'children': ['50', '53']}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': '_computeLearningMode'}, {'id': '53', 'type': 'argument_list', 'children': ['54', '55', '56']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'feedforwardInput'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'lateralInputs'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'feedforwardGrowthCandidates'}, {'id': '57', 'type': 'else_clause', 'children': ['58']}; {'id': '58', 'type': 'block', 'children': ['59']}, {'id': '59', 'type': 'if_statement', 'children': ['60', '73', '111', '144']}; {'id': '60', 'type': 'parenthesized_expression', 'children': ['61']}, {'id': '61', 'type': 'boolean_operator', 'children': ['62', '65'], 'value': 'and'}; {'id': '62', 'type': 'comparison_operator', 'children': ['63', '64'], 'value': 'is'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'predictedInput'}; {'id': '64', 'type': 'None', 'children': []}, {'id': '65', 'type': 'comparison_operator', 'children': ['66', '70'], 'value': '>'}; {'id': '66', 'type': 'call', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '68', 'type': 'argument_list', 'children': ['69']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'predictedInput'}; {'id': '70', 'type': 'attribute', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'predictedInhibitionThreshold'}, {'id': '73', 'type': 'block', 'children': ['74', '84', '94', '102']}; {'id': '74', 'type': 'expression_statement', 'children': ['75']}, {'id': '75', 'type': 'assignment', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'predictedActiveInput'}, {'id': '77', 'type': 'call', 'children': ['78', '81']}; {'id': '78', 'type': 'attribute', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'numpy'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'intersect1d'}, {'id': '81', 'type': 'argument_list', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'feedforwardInput'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'predictedInput'}; {'id': '84', 'type': 'expression_statement', 'children': ['85']}, {'id': '85', 'type': 'assignment', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'predictedGrowthCandidates'}, {'id': '87', 'type': 'call', 'children': ['88', '91']}; {'id': '88', 'type': 'attribute', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'numpy'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'intersect1d'}, {'id': '91', 'type': 'argument_list', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'feedforwardGrowthCandidates'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'predictedInput'}; {'id': '94', 'type': 'expression_statement', 'children': ['95']}, {'id': '95', 'type': 'call', 'children': ['96', '99']}; {'id': '96', 'type': 'attribute', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': '_computeInferenceMode'}, {'id': '99', 'type': 'argument_list', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'predictedActiveInput'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'lateralInputs'}; {'id': '102', 'type': 'expression_statement', 'children': ['103']}, {'id': '103', 'type': 'call', 'children': ['104', '107']}; {'id': '104', 'type': 'attribute', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': '_computeLearningMode'}, {'id': '107', 'type': 'argument_list', 'children': ['108', '109', '110']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'predictedActiveInput'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'lateralInputs'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'feedforwardGrowthCandidates'}, {'id': '111', 'type': 'elif_clause', 'children': ['112', '126']}; {'id': '112', 'type': 'not_operator', 'children': ['113']}, {'id': '113', 'type': 'comparison_operator', 'children': ['114', '117', '123'], 'value': '<='}; {'id': '114', 'type': 'attribute', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'minSdrSize'}, {'id': '117', 'type': 'call', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '119', 'type': 'argument_list', 'children': ['120']}; {'id': '120', 'type': 'attribute', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'activeCells'}, {'id': '123', 'type': 'attribute', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'maxSdrSize'}; {'id': '126', 'type': 'block', 'children': ['127', '135']}, {'id': '127', 'type': 'expression_statement', 'children': ['128']}; {'id': '128', 'type': 'call', 'children': ['129', '132']}, {'id': '129', 'type': 'attribute', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': '_computeInferenceMode'}; {'id': '132', 'type': 'argument_list', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'feedforwardInput'}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'lateralInputs'}, {'id': '135', 'type': 'expression_statement', 'children': ['136']}; {'id': '136', 'type': 'call', 'children': ['137', '140']}, {'id': '137', 'type': 'attribute', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '139', 'type': 'identifier', 'children': [], 'value': '_computeLearningMode'}; {'id': '140', 'type': 'argument_list', 'children': ['141', '142', '143']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'feedforwardInput'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'lateralInputs'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'feedforwardGrowthCandidates'}; {'id': '144', 'type': 'else_clause', 'children': ['145']}, {'id': '145', 'type': 'block', 'children': ['146']}; {'id': '146', 'type': 'expression_statement', 'children': ['147']}, {'id': '147', 'type': 'call', 'children': ['148', '151']}; {'id': '148', 'type': 'attribute', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': '_computeLearningMode'}, {'id': '151', 'type': 'argument_list', 'children': ['152', '153', '154']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'feedforwardInput'}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'lateralInputs'} | def compute(self, feedforwardInput=(), lateralInputs=(),
feedforwardGrowthCandidates=None, learn=True,
predictedInput = None,):
if feedforwardGrowthCandidates is None:
feedforwardGrowthCandidates = feedforwardInput
if not learn:
self._computeInferenceMode(feedforwardInput, lateralInputs)
elif not self.onlineLearning:
self._computeLearningMode(feedforwardInput, lateralInputs,
feedforwardGrowthCandidates)
else:
if (predictedInput is not None and
len(predictedInput) > self.predictedInhibitionThreshold):
predictedActiveInput = numpy.intersect1d(feedforwardInput,
predictedInput)
predictedGrowthCandidates = numpy.intersect1d(
feedforwardGrowthCandidates, predictedInput)
self._computeInferenceMode(predictedActiveInput, lateralInputs)
self._computeLearningMode(predictedActiveInput, lateralInputs,
feedforwardGrowthCandidates)
elif not self.minSdrSize <= len(self.activeCells) <= self.maxSdrSize:
self._computeInferenceMode(feedforwardInput, lateralInputs)
self._computeLearningMode(feedforwardInput, lateralInputs,
feedforwardGrowthCandidates)
else:
self._computeLearningMode(feedforwardInput, lateralInputs,
feedforwardGrowthCandidates) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_learn'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8', '9', '10', '11', '12', '13']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'permanences'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'rng'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'activeCells'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'activeInput'}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'growthCandidateInput'}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'sampleSize'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'initialPermanence'}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'permanenceIncrement'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'permanenceDecrement'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'connectedPermanence'}; {'id': '14', 'type': 'block', 'children': ['15', '24', '34', '43']}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'call', 'children': ['17', '20']}, {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'permanences'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'incrementNonZerosOnOuter'}; {'id': '20', 'type': 'argument_list', 'children': ['21', '22', '23']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'activeCells'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'activeInput'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'permanenceIncrement'}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}, {'id': '25', 'type': 'call', 'children': ['26', '29']}; {'id': '26', 'type': 'attribute', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'permanences'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'incrementNonZerosOnRowsExcludingCols'}, {'id': '29', 'type': 'argument_list', 'children': ['30', '31', '32']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'activeCells'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'activeInput'}; {'id': '32', 'type': 'unary_operator', 'children': ['33'], 'value': '-'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'permanenceDecrement'}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}, {'id': '35', 'type': 'call', 'children': ['36', '39']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'permanences'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'clipRowsBelowAndAbove'}, {'id': '39', 'type': 'argument_list', 'children': ['40', '41', '42']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'activeCells'}, {'id': '41', 'type': 'float', 'children': [], 'value': '0.0'}; {'id': '42', 'type': 'float', 'children': [], 'value': '1.0'}, {'id': '43', 'type': 'if_statement', 'children': ['44', '48', '58']}; {'id': '44', 'type': 'comparison_operator', 'children': ['45', '46'], 'value': '=='}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'sampleSize'}; {'id': '46', 'type': 'unary_operator', 'children': ['47'], 'value': '-'}, {'id': '47', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '48', 'type': 'block', 'children': ['49']}, {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'call', 'children': ['51', '54']}, {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'permanences'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'setZerosOnOuter'}; {'id': '54', 'type': 'argument_list', 'children': ['55', '56', '57']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'activeCells'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'activeInput'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'initialPermanence'}; {'id': '58', 'type': 'else_clause', 'children': ['59']}, {'id': '59', 'type': 'block', 'children': ['60', '70', '85', '96']}; {'id': '60', 'type': 'expression_statement', 'children': ['61']}, {'id': '61', 'type': 'assignment', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'existingSynapseCounts'}, {'id': '63', 'type': 'call', 'children': ['64', '67']}; {'id': '64', 'type': 'attribute', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'permanences'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'nNonZerosPerRowOnCols'}, {'id': '67', 'type': 'argument_list', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'activeCells'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'activeInput'}; {'id': '70', 'type': 'expression_statement', 'children': ['71']}, {'id': '71', 'type': 'assignment', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'maxNewByCell'}, {'id': '73', 'type': 'call', 'children': ['74', '77']}; {'id': '74', 'type': 'attribute', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'numpy'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'empty'}, {'id': '77', 'type': 'argument_list', 'children': ['78', '82']}; {'id': '78', 'type': 'call', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '80', 'type': 'argument_list', 'children': ['81']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'activeCells'}; {'id': '82', 'type': 'keyword_argument', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'dtype'}; {'id': '84', 'type': 'string', 'children': [], 'value': '"int32"'}, {'id': '85', 'type': 'expression_statement', 'children': ['86']}; {'id': '86', 'type': 'call', 'children': ['87', '90']}, {'id': '87', 'type': 'attribute', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'numpy'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'subtract'}; {'id': '90', 'type': 'argument_list', 'children': ['91', '92', '93']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'sampleSize'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'existingSynapseCounts'}, {'id': '93', 'type': 'keyword_argument', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'out'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'maxNewByCell'}; {'id': '96', 'type': 'expression_statement', 'children': ['97']}, {'id': '97', 'type': 'call', 'children': ['98', '101']}; {'id': '98', 'type': 'attribute', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'permanences'}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'setRandomZerosOnOuter'}, {'id': '101', 'type': 'argument_list', 'children': ['102', '103', '104', '105', '106']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'activeCells'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'growthCandidateInput'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'maxNewByCell'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'initialPermanence'} | def _learn(
permanences, rng,
activeCells, activeInput, growthCandidateInput,
sampleSize, initialPermanence, permanenceIncrement,
permanenceDecrement, connectedPermanence):
permanences.incrementNonZerosOnOuter(
activeCells, activeInput, permanenceIncrement)
permanences.incrementNonZerosOnRowsExcludingCols(
activeCells, activeInput, -permanenceDecrement)
permanences.clipRowsBelowAndAbove(
activeCells, 0.0, 1.0)
if sampleSize == -1:
permanences.setZerosOnOuter(
activeCells, activeInput, initialPermanence)
else:
existingSynapseCounts = permanences.nNonZerosPerRowOnCols(
activeCells, activeInput)
maxNewByCell = numpy.empty(len(activeCells), dtype="int32")
numpy.subtract(sampleSize, existingSynapseCounts, out=maxNewByCell)
permanences.setRandomZerosOnOuter(
activeCells, growthCandidateInput, maxNewByCell, initialPermanence, rng) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '20']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'compute'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'deltaLocation'}, {'id': '7', 'type': 'tuple', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'newLocation'}; {'id': '10', 'type': 'tuple', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'featureLocationInput'}, {'id': '13', 'type': 'tuple', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'featureLocationGrowthCandidates'}; {'id': '16', 'type': 'tuple', 'children': []}, {'id': '17', 'type': 'default_parameter', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'learn'}, {'id': '19', 'type': 'True', 'children': []}; {'id': '20', 'type': 'block', 'children': ['21', '27', '72', '123']}, {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'prevActiveCells'}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'activeCells'}, {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'assignment', 'children': ['29', '32']}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'activeDeltaSegments'}; {'id': '32', 'type': 'subscript', 'children': ['33', '71']}, {'id': '33', 'type': 'call', 'children': ['34', '37']}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'where'}, {'id': '37', 'type': 'argument_list', 'children': ['38']}; {'id': '38', 'type': 'binary_operator', 'children': ['39', '55'], 'value': '&'}, {'id': '39', 'type': 'parenthesized_expression', 'children': ['40']}; {'id': '40', 'type': 'comparison_operator', 'children': ['41', '52'], 'value': '>='}, {'id': '41', 'type': 'call', 'children': ['42', '47']}; {'id': '42', 'type': 'attribute', 'children': ['43', '46']}, {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'internalConnections'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'computeActivity'}, {'id': '47', 'type': 'argument_list', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'prevActiveCells'}, {'id': '49', 'type': 'attribute', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'connectedPermanence'}; {'id': '52', 'type': 'attribute', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'activationThreshold'}, {'id': '55', 'type': 'parenthesized_expression', 'children': ['56']}; {'id': '56', 'type': 'comparison_operator', 'children': ['57', '68'], 'value': '>='}, {'id': '57', 'type': 'call', 'children': ['58', '63']}; {'id': '58', 'type': 'attribute', 'children': ['59', '62']}, {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'deltaConnections'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'computeActivity'}, {'id': '63', 'type': 'argument_list', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'deltaLocation'}, {'id': '65', 'type': 'attribute', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'connectedPermanence'}; {'id': '68', 'type': 'attribute', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'activationThreshold'}, {'id': '71', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '72', 'type': 'if_statement', 'children': ['73', '79', '107']}, {'id': '73', 'type': 'comparison_operator', 'children': ['74', '78'], 'value': '=='}; {'id': '74', 'type': 'call', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '76', 'type': 'argument_list', 'children': ['77']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'deltaLocation'}; {'id': '78', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '79', 'type': 'block', 'children': ['80']}; {'id': '80', 'type': 'expression_statement', 'children': ['81']}, {'id': '81', 'type': 'assignment', 'children': ['82', '85']}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'activeFeatureLocationSegments'}, {'id': '85', 'type': 'subscript', 'children': ['86', '106']}; {'id': '86', 'type': 'call', 'children': ['87', '90']}, {'id': '87', 'type': 'attribute', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'where'}; {'id': '90', 'type': 'argument_list', 'children': ['91']}, {'id': '91', 'type': 'comparison_operator', 'children': ['92', '103'], 'value': '>='}; {'id': '92', 'type': 'call', 'children': ['93', '98']}, {'id': '93', 'type': 'attribute', 'children': ['94', '97']}; {'id': '94', 'type': 'attribute', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'featureLocationConnections'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'computeActivity'}; {'id': '98', 'type': 'argument_list', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'featureLocationInput'}; {'id': '100', 'type': 'attribute', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'connectedPermanence'}, {'id': '103', 'type': 'attribute', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'activationThreshold'}; {'id': '106', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '107', 'type': 'else_clause', 'children': ['108']}; {'id': '108', 'type': 'block', 'children': ['109']}, {'id': '109', 'type': 'expression_statement', 'children': ['110']}; {'id': '110', 'type': 'assignment', 'children': ['111', '114']}, {'id': '111', 'type': 'attribute', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'activeFeatureLocationSegments'}; {'id': '114', 'type': 'call', 'children': ['115', '118']}, {'id': '115', 'type': 'attribute', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'empty'}; {'id': '118', 'type': 'argument_list', 'children': ['119', '120']}, {'id': '119', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '120', 'type': 'keyword_argument', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'dtype'}; {'id': '122', 'type': 'string', 'children': [], 'value': '"uint32"'}, {'id': '123', 'type': 'if_statement', 'children': ['124', '130', '158', '244']}; {'id': '124', 'type': 'comparison_operator', 'children': ['125', '129'], 'value': '>'}, {'id': '125', 'type': 'call', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '127', 'type': 'argument_list', 'children': ['128']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'newLocation'}, {'id': '129', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '130', 'type': 'block', 'children': ['131', '137']}, {'id': '131', 'type': 'expression_statement', 'children': ['132']}; {'id': '132', 'type': 'assignment', 'children': ['133', '136']}, {'id': '133', 'type': 'attribute', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'activeCells'}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'newLocation'}, {'id': '137', 'type': 'if_statement', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'learn'}, {'id': '139', 'type': 'block', 'children': ['140', '149']}; {'id': '140', 'type': 'expression_statement', 'children': ['141']}, {'id': '141', 'type': 'call', 'children': ['142', '145']}; {'id': '142', 'type': 'attribute', 'children': ['143', '144']}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '144', 'type': 'identifier', 'children': [], 'value': '_learnTransition'}, {'id': '145', 'type': 'argument_list', 'children': ['146', '147', '148']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'prevActiveCells'}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'deltaLocation'}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'newLocation'}, {'id': '149', 'type': 'expression_statement', 'children': ['150']}; {'id': '150', 'type': 'call', 'children': ['151', '154']}, {'id': '151', 'type': 'attribute', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '153', 'type': 'identifier', 'children': [], 'value': '_learnFeatureLocationPair'}; {'id': '154', 'type': 'argument_list', 'children': ['155', '156', '157']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'newLocation'}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'featureLocationInput'}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'featureLocationGrowthCandidates'}; {'id': '158', 'type': 'elif_clause', 'children': ['159', '165']}, {'id': '159', 'type': 'comparison_operator', 'children': ['160', '164'], 'value': '>'}; {'id': '160', 'type': 'call', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '162', 'type': 'argument_list', 'children': ['163']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'prevActiveCells'}; {'id': '164', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '165', 'type': 'block', 'children': ['166']}; {'id': '166', 'type': 'if_statement', 'children': ['167', '173', '198']}, {'id': '167', 'type': 'comparison_operator', 'children': ['168', '172'], 'value': '>'}; {'id': '168', 'type': 'call', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '170', 'type': 'argument_list', 'children': ['171']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'deltaLocation'}; {'id': '172', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '173', 'type': 'block', 'children': ['174', '187']}; {'id': '174', 'type': 'expression_statement', 'children': ['175']}, {'id': '175', 'type': 'assignment', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'cellsForDeltaSegments'}, {'id': '177', 'type': 'call', 'children': ['178', '183']}; {'id': '178', 'type': 'attribute', 'children': ['179', '182']}, {'id': '179', 'type': 'attribute', 'children': ['180', '181']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'internalConnections'}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'mapSegmentsToCells'}, {'id': '183', 'type': 'argument_list', 'children': ['184']}; {'id': '184', 'type': 'attribute', 'children': ['185', '186']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'activeDeltaSegments'}, {'id': '187', 'type': 'expression_statement', 'children': ['188']}; {'id': '188', 'type': 'assignment', 'children': ['189', '192']}, {'id': '189', 'type': 'attribute', 'children': ['190', '191']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'activeCells'}; {'id': '192', 'type': 'call', 'children': ['193', '196']}, {'id': '193', 'type': 'attribute', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'unique'}; {'id': '196', 'type': 'argument_list', 'children': ['197']}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'cellsForDeltaSegments'}; {'id': '198', 'type': 'else_clause', 'children': ['199']}, {'id': '199', 'type': 'block', 'children': ['200']}; {'id': '200', 'type': 'if_statement', 'children': ['201', '209', '236']}, {'id': '201', 'type': 'comparison_operator', 'children': ['202', '208'], 'value': '>'}; {'id': '202', 'type': 'call', 'children': ['203', '204']}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '204', 'type': 'argument_list', 'children': ['205']}, {'id': '205', 'type': 'attribute', 'children': ['206', '207']}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'activeFeatureLocationSegments'}; {'id': '208', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '209', 'type': 'block', 'children': ['210', '224']}; {'id': '210', 'type': 'expression_statement', 'children': ['211']}, {'id': '211', 'type': 'assignment', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'cellsForFeatureLocationSegments'}, {'id': '213', 'type': 'parenthesized_expression', 'children': ['214']}; {'id': '214', 'type': 'call', 'children': ['215', '220']}, {'id': '215', 'type': 'attribute', 'children': ['216', '219']}; {'id': '216', 'type': 'attribute', 'children': ['217', '218']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'featureLocationConnections'}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'mapSegmentsToCells'}; {'id': '220', 'type': 'argument_list', 'children': ['221']}, {'id': '221', 'type': 'attribute', 'children': ['222', '223']}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'activeFeatureLocationSegments'}; {'id': '224', 'type': 'expression_statement', 'children': ['225']}, {'id': '225', 'type': 'assignment', 'children': ['226', '229']}; {'id': '226', 'type': 'attribute', 'children': ['227', '228']}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'activeCells'}, {'id': '229', 'type': 'call', 'children': ['230', '233']}; {'id': '230', 'type': 'attribute', 'children': ['231', '232']}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'intersect1d'}, {'id': '233', 'type': 'argument_list', 'children': ['234', '235']}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'prevActiveCells'}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'cellsForFeatureLocationSegments'}; {'id': '236', 'type': 'else_clause', 'children': ['237']}, {'id': '237', 'type': 'block', 'children': ['238']}; {'id': '238', 'type': 'expression_statement', 'children': ['239']}, {'id': '239', 'type': 'assignment', 'children': ['240', '243']}; {'id': '240', 'type': 'attribute', 'children': ['241', '242']}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'activeCells'}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'prevActiveCells'}; {'id': '244', 'type': 'elif_clause', 'children': ['245', '251']}, {'id': '245', 'type': 'comparison_operator', 'children': ['246', '250'], 'value': '>'}; {'id': '246', 'type': 'call', 'children': ['247', '248']}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '248', 'type': 'argument_list', 'children': ['249']}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'featureLocationInput'}; {'id': '250', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '251', 'type': 'block', 'children': ['252', '266']}; {'id': '252', 'type': 'expression_statement', 'children': ['253']}, {'id': '253', 'type': 'assignment', 'children': ['254', '255']}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'cellsForFeatureLocationSegments'}, {'id': '255', 'type': 'parenthesized_expression', 'children': ['256']}; {'id': '256', 'type': 'call', 'children': ['257', '262']}, {'id': '257', 'type': 'attribute', 'children': ['258', '261']}; {'id': '258', 'type': 'attribute', 'children': ['259', '260']}, {'id': '259', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '260', 'type': 'identifier', 'children': [], 'value': 'featureLocationConnections'}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'mapSegmentsToCells'}; {'id': '262', 'type': 'argument_list', 'children': ['263']}, {'id': '263', 'type': 'attribute', 'children': ['264', '265']}; {'id': '264', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'activeFeatureLocationSegments'}; {'id': '266', 'type': 'expression_statement', 'children': ['267']}, {'id': '267', 'type': 'assignment', 'children': ['268', '271']}; {'id': '268', 'type': 'attribute', 'children': ['269', '270']}, {'id': '269', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'activeCells'}, {'id': '271', 'type': 'call', 'children': ['272', '275']}; {'id': '272', 'type': 'attribute', 'children': ['273', '274']}, {'id': '273', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '274', 'type': 'identifier', 'children': [], 'value': 'unique'}, {'id': '275', 'type': 'argument_list', 'children': ['276']} | def compute(self, deltaLocation=(), newLocation=(),
featureLocationInput=(), featureLocationGrowthCandidates=(),
learn=True):
prevActiveCells = self.activeCells
self.activeDeltaSegments = np.where(
(self.internalConnections.computeActivity(
prevActiveCells, self.connectedPermanence
) >= self.activationThreshold)
&
(self.deltaConnections.computeActivity(
deltaLocation, self.connectedPermanence
) >= self.activationThreshold))[0]
if len(deltaLocation) == 0:
self.activeFeatureLocationSegments = np.where(
self.featureLocationConnections.computeActivity(
featureLocationInput, self.connectedPermanence
) >= self.activationThreshold)[0]
else:
self.activeFeatureLocationSegments = np.empty(0, dtype="uint32")
if len(newLocation) > 0:
self.activeCells = newLocation
if learn:
self._learnTransition(prevActiveCells, deltaLocation, newLocation)
self._learnFeatureLocationPair(newLocation, featureLocationInput,
featureLocationGrowthCandidates)
elif len(prevActiveCells) > 0:
if len(deltaLocation) > 0:
cellsForDeltaSegments = self.internalConnections.mapSegmentsToCells(
self.activeDeltaSegments)
self.activeCells = np.unique(cellsForDeltaSegments)
else:
if len(self.activeFeatureLocationSegments) > 0:
cellsForFeatureLocationSegments = (
self.featureLocationConnections.mapSegmentsToCells(
self.activeFeatureLocationSegments))
self.activeCells = np.intersect1d(prevActiveCells,
cellsForFeatureLocationSegments)
else:
self.activeCells = prevActiveCells
elif len(featureLocationInput) > 0:
cellsForFeatureLocationSegments = (
self.featureLocationConnections.mapSegmentsToCells(
self.activeFeatureLocationSegments))
self.activeCells = np.unique(cellsForFeatureLocationSegments) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '13']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'getmerge'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '10']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'dst'}, {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'newline'}, {'id': '9', 'type': 'False', 'children': []}; {'id': '10', 'type': 'default_parameter', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'check_crc'}; {'id': '12', 'type': 'False', 'children': []}, {'id': '13', 'type': 'block', 'children': ['14', '16', '25', '34', '40', '48', '70']}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}, {'id': '15', 'type': 'string', 'children': [], 'value': "''' Get all the files in the directories that\n match the source file pattern and merge and sort them to only\n one file on local fs.\n :param paths: Directory containing files that will be merged\n :type paths: string\n :param dst: Path of file that will be written\n :type dst: string\n :param nl: Add a newline character at the end of each file.\n :type nl: boolean\n :returns: string content of the merged file at dst\n '''"}; {'id': '16', 'type': 'if_statement', 'children': ['17', '19']}, {'id': '17', 'type': 'not_operator', 'children': ['18']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '19', 'type': 'block', 'children': ['20']}; {'id': '20', 'type': 'raise_statement', 'children': ['21']}, {'id': '21', 'type': 'call', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'InvalidInputException'}, {'id': '23', 'type': 'argument_list', 'children': ['24']}; {'id': '24', 'type': 'string', 'children': [], 'value': '"getmerge: no path given"'}, {'id': '25', 'type': 'if_statement', 'children': ['26', '28']}; {'id': '26', 'type': 'not_operator', 'children': ['27']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'dst'}; {'id': '28', 'type': 'block', 'children': ['29']}, {'id': '29', 'type': 'raise_statement', 'children': ['30']}; {'id': '30', 'type': 'call', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'InvalidInputException'}; {'id': '32', 'type': 'argument_list', 'children': ['33']}, {'id': '33', 'type': 'string', 'children': [], 'value': '"getmerge: no destination given"'}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}, {'id': '35', 'type': 'assignment', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'temporary_target'}, {'id': '37', 'type': 'binary_operator', 'children': ['38', '39'], 'value': '%'}; {'id': '38', 'type': 'string', 'children': [], 'value': '"%s._COPYING_"'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'dst'}; {'id': '40', 'type': 'expression_statement', 'children': ['41']}, {'id': '41', 'type': 'assignment', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '43', 'type': 'call', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'open'}, {'id': '45', 'type': 'argument_list', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'temporary_target'}, {'id': '47', 'type': 'string', 'children': [], 'value': "'w'"}; {'id': '48', 'type': 'expression_statement', 'children': ['49']}, {'id': '49', 'type': 'assignment', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'processor'}, {'id': '51', 'type': 'lambda', 'children': ['52', '61']}; {'id': '52', 'type': 'lambda_parameters', 'children': ['53', '54', '55', '58']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'node'}, {'id': '55', 'type': 'default_parameter', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'dst'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'dst'}; {'id': '58', 'type': 'default_parameter', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'check_crc'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'check_crc'}, {'id': '61', 'type': 'call', 'children': ['62', '65']}; {'id': '62', 'type': 'attribute', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': '_handle_getmerge'}, {'id': '65', 'type': 'argument_list', 'children': ['66', '67', '68', '69']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'node'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'dst'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'check_crc'}; {'id': '70', 'type': 'try_statement', 'children': ['71', '176']}, {'id': '71', 'type': 'block', 'children': ['72', '156']}; {'id': '72', 'type': 'for_statement', 'children': ['73', '74', '91']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '74', 'type': 'call', 'children': ['75', '78']}, {'id': '75', 'type': 'attribute', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': '_find_items'}; {'id': '78', 'type': 'argument_list', 'children': ['79', '81', '82', '85', '88']}, {'id': '79', 'type': 'list', 'children': ['80'], 'value': '[path]'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'processor'}; {'id': '82', 'type': 'keyword_argument', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'include_toplevel'}; {'id': '84', 'type': 'True', 'children': []}, {'id': '85', 'type': 'keyword_argument', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'recurse'}, {'id': '87', 'type': 'False', 'children': []}; {'id': '88', 'type': 'keyword_argument', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'include_children'}; {'id': '90', 'type': 'True', 'children': []}, {'id': '91', 'type': 'block', 'children': ['92', '142']}; {'id': '92', 'type': 'for_statement', 'children': ['93', '94', '95']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'load'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '95', 'type': 'block', 'children': ['96']}; {'id': '96', 'type': 'if_statement', 'children': ['97', '100', '110']}, {'id': '97', 'type': 'subscript', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'load'}, {'id': '99', 'type': 'string', 'children': [], 'value': "'result'"}; {'id': '100', 'type': 'block', 'children': ['101']}, {'id': '101', 'type': 'expression_statement', 'children': ['102']}; {'id': '102', 'type': 'call', 'children': ['103', '106']}, {'id': '103', 'type': 'attribute', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '106', 'type': 'argument_list', 'children': ['107']}, {'id': '107', 'type': 'subscript', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'load'}, {'id': '109', 'type': 'string', 'children': [], 'value': "'response'"}; {'id': '110', 'type': 'elif_clause', 'children': ['111', '117']}, {'id': '111', 'type': 'not_operator', 'children': ['112']}; {'id': '112', 'type': 'comparison_operator', 'children': ['113', '116'], 'value': 'is'}, {'id': '113', 'type': 'subscript', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'load'}, {'id': '115', 'type': 'string', 'children': [], 'value': "'error'"}; {'id': '116', 'type': 'string', 'children': [], 'value': "''"}, {'id': '117', 'type': 'block', 'children': ['118', '135']}; {'id': '118', 'type': 'if_statement', 'children': ['119', '127']}, {'id': '119', 'type': 'call', 'children': ['120', '125']}; {'id': '120', 'type': 'attribute', 'children': ['121', '124']}, {'id': '121', 'type': 'attribute', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'isfile'}, {'id': '125', 'type': 'argument_list', 'children': ['126']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'temporary_target'}, {'id': '127', 'type': 'block', 'children': ['128']}; {'id': '128', 'type': 'expression_statement', 'children': ['129']}, {'id': '129', 'type': 'call', 'children': ['130', '133']}; {'id': '130', 'type': 'attribute', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'remove'}, {'id': '133', 'type': 'argument_list', 'children': ['134']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'temporary_target'}, {'id': '135', 'type': 'raise_statement', 'children': ['136']}; {'id': '136', 'type': 'call', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'FatalException'}; {'id': '138', 'type': 'argument_list', 'children': ['139']}, {'id': '139', 'type': 'subscript', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'load'}, {'id': '141', 'type': 'string', 'children': [], 'value': "'error'"}; {'id': '142', 'type': 'if_statement', 'children': ['143', '148']}, {'id': '143', 'type': 'boolean_operator', 'children': ['144', '145'], 'value': 'and'}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'newline'}, {'id': '145', 'type': 'subscript', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'load'}, {'id': '147', 'type': 'string', 'children': [], 'value': "'response'"}; {'id': '148', 'type': 'block', 'children': ['149']}, {'id': '149', 'type': 'expression_statement', 'children': ['150']}; {'id': '150', 'type': 'call', 'children': ['151', '154']}, {'id': '151', 'type': 'attribute', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '154', 'type': 'argument_list', 'children': ['155']}, {'id': '155', 'type': 'string', 'children': [], 'value': '"\\n"'}; {'id': '156', 'type': 'expression_statement', 'children': ['157']}, {'id': '157', 'type': 'yield', 'children': ['158']}; {'id': '158', 'type': 'dictionary', 'children': ['159', '162', '165', '168', '173']}, {'id': '159', 'type': 'pair', 'children': ['160', '161']}; {'id': '160', 'type': 'string', 'children': [], 'value': '"path"'}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'dst'}; {'id': '162', 'type': 'pair', 'children': ['163', '164']}, {'id': '163', 'type': 'string', 'children': [], 'value': '"response"'}; {'id': '164', 'type': 'string', 'children': [], 'value': "''"}, {'id': '165', 'type': 'pair', 'children': ['166', '167']}; {'id': '166', 'type': 'string', 'children': [], 'value': '"result"'}, {'id': '167', 'type': 'True', 'children': []}; {'id': '168', 'type': 'pair', 'children': ['169', '170']}, {'id': '169', 'type': 'string', 'children': [], 'value': '"error"'}; {'id': '170', 'type': 'subscript', 'children': ['171', '172']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'load'}; {'id': '172', 'type': 'string', 'children': [], 'value': "'error'"}, {'id': '173', 'type': 'pair', 'children': ['174', '175']}; {'id': '174', 'type': 'string', 'children': [], 'value': '"source_path"'}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '176', 'type': 'finally_clause', 'children': ['177']}, {'id': '177', 'type': 'block', 'children': ['178']}; {'id': '178', 'type': 'if_statement', 'children': ['179', '187']}, {'id': '179', 'type': 'call', 'children': ['180', '185']}; {'id': '180', 'type': 'attribute', 'children': ['181', '184']}, {'id': '181', 'type': 'attribute', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'isfile'}, {'id': '185', 'type': 'argument_list', 'children': ['186']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'temporary_target'}, {'id': '187', 'type': 'block', 'children': ['188', '194']}; {'id': '188', 'type': 'expression_statement', 'children': ['189']}, {'id': '189', 'type': 'call', 'children': ['190', '193']}; {'id': '190', 'type': 'attribute', 'children': ['191', '192']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'close'}, {'id': '193', 'type': 'argument_list', 'children': []}; {'id': '194', 'type': 'expression_statement', 'children': ['195']}, {'id': '195', 'type': 'call', 'children': ['196', '199']}; {'id': '196', 'type': 'attribute', 'children': ['197', '198']}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'rename'}, {'id': '199', 'type': 'argument_list', 'children': ['200', '201']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'temporary_target'}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'dst'} | def getmerge(self, path, dst, newline=False, check_crc=False):
''' Get all the files in the directories that
match the source file pattern and merge and sort them to only
one file on local fs.
:param paths: Directory containing files that will be merged
:type paths: string
:param dst: Path of file that will be written
:type dst: string
:param nl: Add a newline character at the end of each file.
:type nl: boolean
:returns: string content of the merged file at dst
'''
if not path:
raise InvalidInputException("getmerge: no path given")
if not dst:
raise InvalidInputException("getmerge: no destination given")
temporary_target = "%s._COPYING_" % dst
f = open(temporary_target, 'w')
processor = lambda path, node, dst=dst, check_crc=check_crc: self._handle_getmerge(path, node, dst, check_crc)
try:
for item in self._find_items([path], processor, include_toplevel=True, recurse=False, include_children=True):
for load in item:
if load['result']:
f.write(load['response'])
elif not load['error'] is '':
if os.path.isfile(temporary_target):
os.remove(temporary_target)
raise FatalException(load['error'])
if newline and load['response']:
f.write("\n")
yield {"path": dst, "response": '', "result": True, "error": load['error'], "source_path": path}
finally:
if os.path.isfile(temporary_target):
f.close()
os.rename(temporary_target, dst) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'countByValue'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6']}; {'id': '6', 'type': 'return_statement', 'children': ['7']}, {'id': '7', 'type': 'call', 'children': ['8', '11']}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'transform'}, {'id': '11', 'type': 'argument_list', 'children': ['12']}; {'id': '12', 'type': 'lambda', 'children': ['13', '15']}, {'id': '13', 'type': 'lambda_parameters', 'children': ['14']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'rdd'}, {'id': '15', 'type': 'call', 'children': ['16', '23']}; {'id': '16', 'type': 'attribute', 'children': ['17', '22']}, {'id': '17', 'type': 'attribute', 'children': ['18', '21']}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': '_context'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': '_context'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'parallelize'}, {'id': '23', 'type': 'argument_list', 'children': ['24']}; {'id': '24', 'type': 'call', 'children': ['25', '32']}, {'id': '25', 'type': 'attribute', 'children': ['26', '31']}; {'id': '26', 'type': 'call', 'children': ['27', '30']}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'rdd'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'countByValue'}; {'id': '30', 'type': 'argument_list', 'children': []}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'items'} | def countByValue(self):
return self.transform(
lambda rdd: self._context._context.parallelize(
rdd.countByValue().items())) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_contiguous_offsets'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'offsets'}; {'id': '6', 'type': 'block', 'children': ['7', '13', '41']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'call', 'children': ['9', '12']}, {'id': '9', 'type': 'attribute', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'offsets'}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '12', 'type': 'argument_list', 'children': []}, {'id': '13', 'type': 'for_statement', 'children': ['14', '15', '24']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '15', 'type': 'call', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'range'}, {'id': '17', 'type': 'argument_list', 'children': ['18']}; {'id': '18', 'type': 'binary_operator', 'children': ['19', '23'], 'value': '-'}, {'id': '19', 'type': 'call', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '21', 'type': 'argument_list', 'children': ['22']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'offsets'}, {'id': '23', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '24', 'type': 'block', 'children': ['25']}, {'id': '25', 'type': 'assert_statement', 'children': ['26', '37']}; {'id': '26', 'type': 'comparison_operator', 'children': ['27', '32'], 'value': '=='}, {'id': '27', 'type': 'binary_operator', 'children': ['28', '31'], 'value': '+'}; {'id': '28', 'type': 'subscript', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'offsets'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '31', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '32', 'type': 'subscript', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'offsets'}; {'id': '34', 'type': 'binary_operator', 'children': ['35', '36'], 'value': '+'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '36', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '37', 'type': 'binary_operator', 'children': ['38', '39'], 'value': '%'}; {'id': '38', 'type': 'string', 'children': [], 'value': '"Offsets not contiguous: %s"'}, {'id': '39', 'type': 'tuple', 'children': ['40']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'offsets'}, {'id': '41', 'type': 'return_statement', 'children': ['42']} | def _contiguous_offsets(self, offsets):
offsets.sort()
for i in range(len(offsets) - 1):
assert offsets[i] + 1 == offsets[i + 1], \
"Offsets not contiguous: %s" % (offsets,)
return offsets |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_collapse'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'intervals'}, {'id': '5', 'type': 'block', 'children': ['6', '10', '65']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'span'}, {'id': '9', 'type': 'None', 'children': []}; {'id': '10', 'type': 'for_statement', 'children': ['11', '14', '15']}, {'id': '11', 'type': 'pattern_list', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'start'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'stop'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'intervals'}, {'id': '15', 'type': 'block', 'children': ['16']}; {'id': '16', 'type': 'if_statement', 'children': ['17', '20', '29', '47']}, {'id': '17', 'type': 'comparison_operator', 'children': ['18', '19'], 'value': 'is'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'span'}, {'id': '19', 'type': 'None', 'children': []}; {'id': '20', 'type': 'block', 'children': ['21']}, {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'span'}; {'id': '24', 'type': 'call', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': '_Interval'}; {'id': '26', 'type': 'argument_list', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'start'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'stop'}, {'id': '29', 'type': 'elif_clause', 'children': ['30', '36']}; {'id': '30', 'type': 'comparison_operator', 'children': ['31', '32', '35'], 'value': '<='}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'start'}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'span'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'stop'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'stop'}; {'id': '36', 'type': 'block', 'children': ['37']}, {'id': '37', 'type': 'expression_statement', 'children': ['38']}; {'id': '38', 'type': 'assignment', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'span'}; {'id': '40', 'type': 'call', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': '_Interval'}; {'id': '42', 'type': 'argument_list', 'children': ['43', '46']}, {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'span'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'start'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'stop'}, {'id': '47', 'type': 'elif_clause', 'children': ['48', '53']}; {'id': '48', 'type': 'comparison_operator', 'children': ['49', '50'], 'value': '>'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'start'}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'span'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'stop'}, {'id': '53', 'type': 'block', 'children': ['54', '57']}; {'id': '54', 'type': 'expression_statement', 'children': ['55']}, {'id': '55', 'type': 'yield', 'children': ['56']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'span'}, {'id': '57', 'type': 'expression_statement', 'children': ['58']}; {'id': '58', 'type': 'assignment', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'span'}; {'id': '60', 'type': 'call', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': '_Interval'}; {'id': '62', 'type': 'argument_list', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'start'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'stop'}, {'id': '65', 'type': 'if_statement', 'children': ['66', '69']}; {'id': '66', 'type': 'comparison_operator', 'children': ['67', '68'], 'value': 'is'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'span'}; {'id': '68', 'type': 'None', 'children': []}, {'id': '69', 'type': 'block', 'children': ['70']}; {'id': '70', 'type': 'expression_statement', 'children': ['71']}, {'id': '71', 'type': 'yield', 'children': ['72']} | def _collapse(intervals):
span = None
for start, stop in intervals:
if span is None:
span = _Interval(start, stop)
elif start <= span.stop < stop:
span = _Interval(span.start, stop)
elif start > span.stop:
yield span
span = _Interval(start, stop)
if span is not None:
yield span |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'remove'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'hash'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'keepSorted'}, {'id': '13', 'type': 'True', 'children': []}; {'id': '14', 'type': 'block', 'children': ['15', '32', '143', '160']}, {'id': '15', 'type': 'if_statement', 'children': ['16', '19']}; {'id': '16', 'type': 'comparison_operator', 'children': ['17', '18'], 'value': 'is'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '18', 'type': 'None', 'children': []}, {'id': '19', 'type': 'block', 'children': ['20']}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'call', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'clibrebound'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'reb_remove'}, {'id': '25', 'type': 'argument_list', 'children': ['26', '30', '31']}; {'id': '26', 'type': 'call', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'byref'}; {'id': '28', 'type': 'argument_list', 'children': ['29']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'keepSorted'}; {'id': '32', 'type': 'if_statement', 'children': ['33', '36']}, {'id': '33', 'type': 'comparison_operator', 'children': ['34', '35'], 'value': 'is'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'hash'}, {'id': '35', 'type': 'None', 'children': []}; {'id': '36', 'type': 'block', 'children': ['37', '44', '54', '80']}, {'id': '37', 'type': 'expression_statement', 'children': ['38']}; {'id': '38', 'type': 'assignment', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'hash_types'}; {'id': '40', 'type': 'expression_list', 'children': ['41', '42', '43']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'c_uint32'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'c_uint'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'c_ulong'}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}, {'id': '45', 'type': 'assignment', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'PY3'}, {'id': '47', 'type': 'comparison_operator', 'children': ['48', '53'], 'value': '=='}; {'id': '48', 'type': 'subscript', 'children': ['49', '52']}, {'id': '49', 'type': 'attribute', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'sys'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'version_info'}; {'id': '52', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '53', 'type': 'integer', 'children': [], 'value': '3'}; {'id': '54', 'type': 'if_statement', 'children': ['55', '56', '67']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'PY3'}; {'id': '56', 'type': 'block', 'children': ['57', '62']}, {'id': '57', 'type': 'expression_statement', 'children': ['58']}; {'id': '58', 'type': 'assignment', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'string_types'}; {'id': '60', 'type': 'expression_list', 'children': ['61']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '62', 'type': 'expression_statement', 'children': ['63']}, {'id': '63', 'type': 'assignment', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'int_types'}, {'id': '65', 'type': 'expression_list', 'children': ['66']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '67', 'type': 'else_clause', 'children': ['68']}; {'id': '68', 'type': 'block', 'children': ['69', '74']}, {'id': '69', 'type': 'expression_statement', 'children': ['70']}; {'id': '70', 'type': 'assignment', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'string_types'}; {'id': '72', 'type': 'expression_list', 'children': ['73']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'basestring'}; {'id': '74', 'type': 'expression_statement', 'children': ['75']}, {'id': '75', 'type': 'assignment', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'int_types'}, {'id': '77', 'type': 'expression_list', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'int'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'long'}; {'id': '80', 'type': 'if_statement', 'children': ['81', '86', '102', '124']}, {'id': '81', 'type': 'call', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '83', 'type': 'argument_list', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'hash'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'string_types'}; {'id': '86', 'type': 'block', 'children': ['87']}, {'id': '87', 'type': 'expression_statement', 'children': ['88']}; {'id': '88', 'type': 'call', 'children': ['89', '92']}, {'id': '89', 'type': 'attribute', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'clibrebound'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'reb_remove_by_hash'}; {'id': '92', 'type': 'argument_list', 'children': ['93', '97', '101']}, {'id': '93', 'type': 'call', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'byref'}, {'id': '95', 'type': 'argument_list', 'children': ['96']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '97', 'type': 'call', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'rebhash'}, {'id': '99', 'type': 'argument_list', 'children': ['100']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'hash'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'keepSorted'}; {'id': '102', 'type': 'elif_clause', 'children': ['103', '108']}, {'id': '103', 'type': 'call', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '105', 'type': 'argument_list', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'hash'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'int_types'}; {'id': '108', 'type': 'block', 'children': ['109']}, {'id': '109', 'type': 'expression_statement', 'children': ['110']}; {'id': '110', 'type': 'call', 'children': ['111', '114']}, {'id': '111', 'type': 'attribute', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'clibrebound'}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'reb_remove_by_hash'}; {'id': '114', 'type': 'argument_list', 'children': ['115', '119', '123']}, {'id': '115', 'type': 'call', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'byref'}, {'id': '117', 'type': 'argument_list', 'children': ['118']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '119', 'type': 'call', 'children': ['120', '121']}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'c_uint32'}, {'id': '121', 'type': 'argument_list', 'children': ['122']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'hash'}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'keepSorted'}; {'id': '124', 'type': 'elif_clause', 'children': ['125', '130']}, {'id': '125', 'type': 'call', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '127', 'type': 'argument_list', 'children': ['128', '129']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'hash'}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'hash_types'}; {'id': '130', 'type': 'block', 'children': ['131']}, {'id': '131', 'type': 'expression_statement', 'children': ['132']}; {'id': '132', 'type': 'call', 'children': ['133', '136']}, {'id': '133', 'type': 'attribute', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'clibrebound'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'reb_remove_by_hash'}; {'id': '136', 'type': 'argument_list', 'children': ['137', '141', '142']}, {'id': '137', 'type': 'call', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'byref'}, {'id': '139', 'type': 'argument_list', 'children': ['140']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'hash'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'keepSorted'}, {'id': '143', 'type': 'if_statement', 'children': ['144', '149']}; {'id': '144', 'type': 'call', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'hasattr'}; {'id': '146', 'type': 'argument_list', 'children': ['147', '148']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '148', 'type': 'string', 'children': [], 'value': "'_widgets'"}, {'id': '149', 'type': 'block', 'children': ['150']}; {'id': '150', 'type': 'expression_statement', 'children': ['151']}, {'id': '151', 'type': 'call', 'children': ['152', '155']}; {'id': '152', 'type': 'attribute', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': '_display_heartbeat'}, {'id': '155', 'type': 'argument_list', 'children': ['156']}; {'id': '156', 'type': 'call', 'children': ['157', '158']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'pointer'}; {'id': '158', 'type': 'argument_list', 'children': ['159']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '160', 'type': 'expression_statement', 'children': ['161']}, {'id': '161', 'type': 'call', 'children': ['162', '165']}; {'id': '162', 'type': 'attribute', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'process_messages'}, {'id': '165', 'type': 'argument_list', 'children': []} | def remove(self, index=None, hash=None, keepSorted=True):
if index is not None:
clibrebound.reb_remove(byref(self), index, keepSorted)
if hash is not None:
hash_types = c_uint32, c_uint, c_ulong
PY3 = sys.version_info[0] == 3
if PY3:
string_types = str,
int_types = int,
else:
string_types = basestring,
int_types = int, long
if isinstance(hash, string_types):
clibrebound.reb_remove_by_hash(byref(self), rebhash(hash), keepSorted)
elif isinstance(hash, int_types):
clibrebound.reb_remove_by_hash(byref(self), c_uint32(hash), keepSorted)
elif isinstance(hash, hash_types):
clibrebound.reb_remove_by_hash(byref(self), hash, keepSorted)
if hasattr(self, '_widgets'):
self._display_heartbeat(pointer(self))
self.process_messages() |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'particles'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '14', '18', '41', '47', '76']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'sim'}, {'id': '9', 'type': 'attribute', 'children': ['10', '13']}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': '_sim'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'contents'}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}, {'id': '15', 'type': 'assignment', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'ps'}, {'id': '17', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '18', 'type': 'if_statement', 'children': ['19', '24', '29']}, {'id': '19', 'type': 'comparison_operator', 'children': ['20', '23'], 'value': '>='}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'testparticle'}, {'id': '23', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '24', 'type': 'block', 'children': ['25']}, {'id': '25', 'type': 'expression_statement', 'children': ['26']}; {'id': '26', 'type': 'assignment', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'N'}; {'id': '28', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '29', 'type': 'else_clause', 'children': ['30']}; {'id': '30', 'type': 'block', 'children': ['31']}, {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'assignment', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'N'}; {'id': '34', 'type': 'binary_operator', 'children': ['35', '38'], 'value': '-'}, {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'sim'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'N'}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'sim'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'N_var'}, {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'assignment', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'ParticleList'}; {'id': '44', 'type': 'binary_operator', 'children': ['45', '46'], 'value': '*'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'Particle'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'N'}, {'id': '47', 'type': 'expression_statement', 'children': ['48']}; {'id': '48', 'type': 'assignment', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'ps'}; {'id': '50', 'type': 'call', 'children': ['51', '54']}, {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'ParticleList'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'from_address'}; {'id': '54', 'type': 'argument_list', 'children': ['55']}, {'id': '55', 'type': 'binary_operator', 'children': ['56', '66'], 'value': '+'}; {'id': '56', 'type': 'call', 'children': ['57', '60']}, {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'ctypes'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'addressof'}; {'id': '60', 'type': 'argument_list', 'children': ['61']}, {'id': '61', 'type': 'attribute', 'children': ['62', '65']}; {'id': '62', 'type': 'attribute', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'sim'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': '_particles'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'contents'}; {'id': '66', 'type': 'binary_operator', 'children': ['67', '70'], 'value': '*'}, {'id': '67', 'type': 'attribute', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '70', 'type': 'call', 'children': ['71', '74']}, {'id': '71', 'type': 'attribute', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'ctypes'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'sizeof'}; {'id': '74', 'type': 'argument_list', 'children': ['75']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'Particle'}; {'id': '76', 'type': 'return_statement', 'children': ['77']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'ps'} | def particles(self):
sim = self._sim.contents
ps = []
if self.testparticle>=0:
N = 1
else:
N = sim.N-sim.N_var
ParticleList = Particle*N
ps = ParticleList.from_address(ctypes.addressof(sim._particles.contents)+self.index*ctypes.sizeof(Particle))
return ps |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'filter_queryset'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'queryset'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'view'}; {'id': '8', 'type': 'block', 'children': ['9', '17', '28', '39']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '14']}, {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'ordering_param'}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'view'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'SORT'}, {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'assignment', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'ordering'}; {'id': '20', 'type': 'call', 'children': ['21', '24']}, {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'get_ordering'}; {'id': '24', 'type': 'argument_list', 'children': ['25', '26', '27']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'queryset'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'view'}; {'id': '28', 'type': 'if_statement', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'ordering'}; {'id': '30', 'type': 'block', 'children': ['31']}, {'id': '31', 'type': 'return_statement', 'children': ['32']}; {'id': '32', 'type': 'call', 'children': ['33', '36']}, {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'queryset'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'order_by'}; {'id': '36', 'type': 'argument_list', 'children': ['37']}, {'id': '37', 'type': 'list_splat', 'children': ['38']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'ordering'}, {'id': '39', 'type': 'return_statement', 'children': ['40']} | def filter_queryset(self, request, queryset, view):
self.ordering_param = view.SORT
ordering = self.get_ordering(request, queryset, view)
if ordering:
return queryset.order_by(*ordering)
return queryset |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_ordering'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'request'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'queryset'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'view'}; {'id': '8', 'type': 'block', 'children': ['9', '20', '62']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '12', 'type': 'call', 'children': ['13', '16']}, {'id': '13', 'type': 'attribute', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'view'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'get_request_feature'}; {'id': '16', 'type': 'argument_list', 'children': ['17']}, {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'view'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'SORT'}; {'id': '20', 'type': 'if_statement', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '22', 'type': 'block', 'children': ['23', '35', '48']}, {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'fields'}; {'id': '26', 'type': 'list_comprehension', 'children': ['27', '32']}, {'id': '27', 'type': 'call', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'param'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'strip'}, {'id': '31', 'type': 'argument_list', 'children': []}; {'id': '32', 'type': 'for_in_clause', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'param'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'assignment', 'children': ['37', '40']}, {'id': '37', 'type': 'pattern_list', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'valid_ordering'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'invalid_ordering'}; {'id': '40', 'type': 'call', 'children': ['41', '44']}, {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'remove_invalid_fields'}; {'id': '44', 'type': 'argument_list', 'children': ['45', '46', '47']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'queryset'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'fields'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'view'}; {'id': '48', 'type': 'if_statement', 'children': ['49', '50', '58']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'invalid_ordering'}; {'id': '50', 'type': 'block', 'children': ['51']}, {'id': '51', 'type': 'raise_statement', 'children': ['52']}; {'id': '52', 'type': 'call', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'ValidationError'}; {'id': '54', 'type': 'argument_list', 'children': ['55']}, {'id': '55', 'type': 'binary_operator', 'children': ['56', '57'], 'value': '%'}; {'id': '56', 'type': 'string', 'children': [], 'value': '"Invalid filter field: %s"'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'invalid_ordering'}; {'id': '58', 'type': 'else_clause', 'children': ['59']}, {'id': '59', 'type': 'block', 'children': ['60']}; {'id': '60', 'type': 'return_statement', 'children': ['61']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'valid_ordering'}; {'id': '62', 'type': 'return_statement', 'children': ['63']}, {'id': '63', 'type': 'call', 'children': ['64', '67']}; {'id': '64', 'type': 'attribute', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'get_default_ordering'}, {'id': '67', 'type': 'argument_list', 'children': ['68']} | def get_ordering(self, request, queryset, view):
params = view.get_request_feature(view.SORT)
if params:
fields = [param.strip() for param in params]
valid_ordering, invalid_ordering = self.remove_invalid_fields(
queryset, fields, view
)
if invalid_ordering:
raise ValidationError(
"Invalid filter field: %s" % invalid_ordering
)
else:
return valid_ordering
return self.get_default_ordering(view) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'remove_invalid_fields'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'queryset'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'fields'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'view'}; {'id': '8', 'type': 'block', 'children': ['9', '13', '17', '76']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'valid_orderings'}; {'id': '12', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '13', 'type': 'expression_statement', 'children': ['14']}; {'id': '14', 'type': 'assignment', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'invalid_orderings'}; {'id': '16', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '17', 'type': 'for_statement', 'children': ['18', '19', '20']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'term'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'fields'}; {'id': '20', 'type': 'block', 'children': ['21', '30', '45', '55']}, {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'stripped_term'}; {'id': '24', 'type': 'call', 'children': ['25', '28']}, {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'term'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'lstrip'}; {'id': '28', 'type': 'argument_list', 'children': ['29']}, {'id': '29', 'type': 'string', 'children': [], 'value': "'-'"}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}, {'id': '31', 'type': 'assignment', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'reverse_sort_term'}, {'id': '33', 'type': 'conditional_expression', 'children': ['34', '35', '44'], 'value': 'if'}; {'id': '34', 'type': 'string', 'children': [], 'value': "''"}, {'id': '35', 'type': 'comparison_operator', 'children': ['36', '40'], 'value': 'is'}; {'id': '36', 'type': 'call', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '38', 'type': 'argument_list', 'children': ['39']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'stripped_term'}; {'id': '40', 'type': 'call', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '42', 'type': 'argument_list', 'children': ['43']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'term'}; {'id': '44', 'type': 'string', 'children': [], 'value': "'-'"}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'assignment', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'ordering'}; {'id': '48', 'type': 'call', 'children': ['49', '52']}, {'id': '49', 'type': 'attribute', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'ordering_for'}; {'id': '52', 'type': 'argument_list', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'stripped_term'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'view'}, {'id': '55', 'type': 'if_statement', 'children': ['56', '57', '67']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'ordering'}, {'id': '57', 'type': 'block', 'children': ['58']}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}, {'id': '59', 'type': 'call', 'children': ['60', '63']}; {'id': '60', 'type': 'attribute', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'valid_orderings'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '63', 'type': 'argument_list', 'children': ['64']}; {'id': '64', 'type': 'binary_operator', 'children': ['65', '66'], 'value': '+'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'reverse_sort_term'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'ordering'}, {'id': '67', 'type': 'else_clause', 'children': ['68']}; {'id': '68', 'type': 'block', 'children': ['69']}, {'id': '69', 'type': 'expression_statement', 'children': ['70']}; {'id': '70', 'type': 'call', 'children': ['71', '74']}, {'id': '71', 'type': 'attribute', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'invalid_orderings'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '74', 'type': 'argument_list', 'children': ['75']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'term'}; {'id': '76', 'type': 'return_statement', 'children': ['77']}, {'id': '77', 'type': 'expression_list', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'valid_orderings'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'invalid_orderings'} | def remove_invalid_fields(self, queryset, fields, view):
valid_orderings = []
invalid_orderings = []
for term in fields:
stripped_term = term.lstrip('-')
reverse_sort_term = '' if len(stripped_term) is len(term) else '-'
ordering = self.ordering_for(stripped_term, view)
if ordering:
valid_orderings.append(reverse_sort_term + ordering)
else:
invalid_orderings.append(term)
return valid_orderings, invalid_orderings |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '13', '17']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_format_dataframe'}, {'id': '3', 'type': 'parameters', 'children': ['4', '10']}; {'id': '4', 'type': 'typed_parameter', 'children': ['5', '6']}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'df'}; {'id': '6', 'type': 'type', 'children': ['7']}, {'id': '7', 'type': 'attribute', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'pd'}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'DataFrame'}; {'id': '10', 'type': 'default_parameter', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'nautical_units'}; {'id': '12', 'type': 'True', 'children': []}, {'id': '13', 'type': 'type', 'children': ['14']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'pd'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'DataFrame'}, {'id': '17', 'type': 'block', 'children': ['18', '47', '115', '137', '176']}; {'id': '18', 'type': 'if_statement', 'children': ['19', '32']}, {'id': '19', 'type': 'boolean_operator', 'children': ['20', '25'], 'value': 'and'}; {'id': '20', 'type': 'comparison_operator', 'children': ['21', '22'], 'value': 'in'}, {'id': '21', 'type': 'string', 'children': [], 'value': '"callsign"'}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'df'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'columns'}, {'id': '25', 'type': 'comparison_operator', 'children': ['26', '31'], 'value': '=='}; {'id': '26', 'type': 'attribute', 'children': ['27', '30']}, {'id': '27', 'type': 'attribute', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'df'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'callsign'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'dtype'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'object'}; {'id': '32', 'type': 'block', 'children': ['33']}, {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'assignment', 'children': ['35', '38']}, {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'df'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'callsign'}; {'id': '38', 'type': 'call', 'children': ['39', '46']}, {'id': '39', 'type': 'attribute', 'children': ['40', '45']}; {'id': '40', 'type': 'attribute', 'children': ['41', '44']}, {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'df'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'callsign'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'strip'}; {'id': '46', 'type': 'argument_list', 'children': []}, {'id': '47', 'type': 'if_statement', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'nautical_units'}, {'id': '49', 'type': 'block', 'children': ['50', '60', '77', '96']}; {'id': '50', 'type': 'expression_statement', 'children': ['51']}, {'id': '51', 'type': 'assignment', 'children': ['52', '55']}; {'id': '52', 'type': 'attribute', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'df'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'altitude'}, {'id': '55', 'type': 'binary_operator', 'children': ['56', '59'], 'value': '/'}; {'id': '56', 'type': 'attribute', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'df'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'altitude'}, {'id': '59', 'type': 'float', 'children': [], 'value': '0.3048'}; {'id': '60', 'type': 'if_statement', 'children': ['61', '66']}, {'id': '61', 'type': 'comparison_operator', 'children': ['62', '63'], 'value': 'in'}; {'id': '62', 'type': 'string', 'children': [], 'value': '"geoaltitude"'}, {'id': '63', 'type': 'attribute', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'df'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'columns'}; {'id': '66', 'type': 'block', 'children': ['67']}, {'id': '67', 'type': 'expression_statement', 'children': ['68']}; {'id': '68', 'type': 'assignment', 'children': ['69', '72']}, {'id': '69', 'type': 'attribute', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'df'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'geoaltitude'}; {'id': '72', 'type': 'binary_operator', 'children': ['73', '76'], 'value': '/'}, {'id': '73', 'type': 'attribute', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'df'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'geoaltitude'}; {'id': '76', 'type': 'float', 'children': [], 'value': '0.3048'}, {'id': '77', 'type': 'if_statement', 'children': ['78', '83']}; {'id': '78', 'type': 'comparison_operator', 'children': ['79', '80'], 'value': 'in'}, {'id': '79', 'type': 'string', 'children': [], 'value': '"groundspeed"'}; {'id': '80', 'type': 'attribute', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'df'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'columns'}, {'id': '83', 'type': 'block', 'children': ['84']}; {'id': '84', 'type': 'expression_statement', 'children': ['85']}, {'id': '85', 'type': 'assignment', 'children': ['86', '89']}; {'id': '86', 'type': 'attribute', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'df'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'groundspeed'}, {'id': '89', 'type': 'binary_operator', 'children': ['90', '95'], 'value': '*'}; {'id': '90', 'type': 'binary_operator', 'children': ['91', '94'], 'value': '/'}, {'id': '91', 'type': 'attribute', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'df'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'groundspeed'}; {'id': '94', 'type': 'integer', 'children': [], 'value': '1852'}, {'id': '95', 'type': 'integer', 'children': [], 'value': '3600'}; {'id': '96', 'type': 'if_statement', 'children': ['97', '102']}, {'id': '97', 'type': 'comparison_operator', 'children': ['98', '99'], 'value': 'in'}; {'id': '98', 'type': 'string', 'children': [], 'value': '"vertical_rate"'}, {'id': '99', 'type': 'attribute', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'df'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'columns'}; {'id': '102', 'type': 'block', 'children': ['103']}, {'id': '103', 'type': 'expression_statement', 'children': ['104']}; {'id': '104', 'type': 'assignment', 'children': ['105', '108']}, {'id': '105', 'type': 'attribute', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'df'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'vertical_rate'}; {'id': '108', 'type': 'binary_operator', 'children': ['109', '114'], 'value': '*'}, {'id': '109', 'type': 'binary_operator', 'children': ['110', '113'], 'value': '/'}; {'id': '110', 'type': 'attribute', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'df'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'vertical_rate'}, {'id': '113', 'type': 'float', 'children': [], 'value': '0.3048'}; {'id': '114', 'type': 'integer', 'children': [], 'value': '60'}, {'id': '115', 'type': 'expression_statement', 'children': ['116']}; {'id': '116', 'type': 'assignment', 'children': ['117', '120']}, {'id': '117', 'type': 'attribute', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'df'}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'timestamp'}; {'id': '120', 'type': 'call', 'children': ['121', '135']}, {'id': '121', 'type': 'attribute', 'children': ['122', '134']}; {'id': '122', 'type': 'attribute', 'children': ['123', '133']}, {'id': '123', 'type': 'call', 'children': ['124', '127']}; {'id': '124', 'type': 'attribute', 'children': ['125', '126']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'pd'}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'to_datetime'}, {'id': '127', 'type': 'argument_list', 'children': ['128']}; {'id': '128', 'type': 'binary_operator', 'children': ['129', '132'], 'value': '*'}, {'id': '129', 'type': 'attribute', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'df'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'timestamp'}; {'id': '132', 'type': 'float', 'children': [], 'value': '1e9'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'dt'}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'tz_localize'}, {'id': '135', 'type': 'argument_list', 'children': ['136']}; {'id': '136', 'type': 'string', 'children': [], 'value': '"utc"'}, {'id': '137', 'type': 'if_statement', 'children': ['138', '143']}; {'id': '138', 'type': 'comparison_operator', 'children': ['139', '140'], 'value': 'in'}, {'id': '139', 'type': 'string', 'children': [], 'value': '"last_position"'}; {'id': '140', 'type': 'attribute', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'df'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'columns'}, {'id': '143', 'type': 'block', 'children': ['144']}; {'id': '144', 'type': 'expression_statement', 'children': ['145']}, {'id': '145', 'type': 'assignment', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'df'}, {'id': '147', 'type': 'call', 'children': ['148', '156']}; {'id': '148', 'type': 'attribute', 'children': ['149', '155']}, {'id': '149', 'type': 'call', 'children': ['150', '153']}; {'id': '150', 'type': 'attribute', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'df'}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'query'}, {'id': '153', 'type': 'argument_list', 'children': ['154']}; {'id': '154', 'type': 'string', 'children': [], 'value': '"last_position == last_position"'}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'assign'}; {'id': '156', 'type': 'argument_list', 'children': ['157']}, {'id': '157', 'type': 'keyword_argument', 'children': ['158', '159']}; {'id': '158', 'type': 'identifier', 'children': [], 'value': 'last_position'}, {'id': '159', 'type': 'call', 'children': ['160', '174']}; {'id': '160', 'type': 'attribute', 'children': ['161', '173']}, {'id': '161', 'type': 'attribute', 'children': ['162', '172']}; {'id': '162', 'type': 'call', 'children': ['163', '166']}, {'id': '163', 'type': 'attribute', 'children': ['164', '165']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'pd'}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'to_datetime'}; {'id': '166', 'type': 'argument_list', 'children': ['167']}, {'id': '167', 'type': 'binary_operator', 'children': ['168', '171'], 'value': '*'}; {'id': '168', 'type': 'attribute', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'df'}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'last_position'}, {'id': '171', 'type': 'float', 'children': [], 'value': '1e9'}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'dt'}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'tz_localize'}; {'id': '174', 'type': 'argument_list', 'children': ['175']}, {'id': '175', 'type': 'string', 'children': [], 'value': '"utc"'}; {'id': '176', 'type': 'return_statement', 'children': ['177']}, {'id': '177', 'type': 'call', 'children': ['178', '181']}; {'id': '178', 'type': 'attribute', 'children': ['179', '180']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'df'}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'sort_values'}, {'id': '181', 'type': 'argument_list', 'children': ['182']} | def _format_dataframe(
df: pd.DataFrame, nautical_units=True
) -> pd.DataFrame:
if "callsign" in df.columns and df.callsign.dtype == object:
df.callsign = df.callsign.str.strip()
if nautical_units:
df.altitude = df.altitude / 0.3048
if "geoaltitude" in df.columns:
df.geoaltitude = df.geoaltitude / 0.3048
if "groundspeed" in df.columns:
df.groundspeed = df.groundspeed / 1852 * 3600
if "vertical_rate" in df.columns:
df.vertical_rate = df.vertical_rate / 0.3048 * 60
df.timestamp = pd.to_datetime(df.timestamp * 1e9).dt.tz_localize("utc")
if "last_position" in df.columns:
df = df.query("last_position == last_position").assign(
last_position=pd.to_datetime(
df.last_position * 1e9
).dt.tz_localize("utc")
)
return df.sort_values("timestamp") |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'find_package_indexes_in_dir'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'simple_dir'}; {'id': '6', 'type': 'block', 'children': ['7', '26', '51']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'packages'}; {'id': '10', 'type': 'call', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '12', 'type': 'argument_list', 'children': ['13']}, {'id': '13', 'type': 'set_comprehension', 'children': ['14', '18']}; {'id': '14', 'type': 'call', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'canonicalize_name'}; {'id': '16', 'type': 'argument_list', 'children': ['17']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '18', 'type': 'for_in_clause', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '20', 'type': 'call', 'children': ['21', '24']}, {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'listdir'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'simple_dir'}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}, {'id': '27', 'type': 'assignment', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'packages'}, {'id': '29', 'type': 'list_comprehension', 'children': ['30', '31', '34']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '31', 'type': 'for_in_clause', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'packages'}; {'id': '34', 'type': 'if_clause', 'children': ['35']}, {'id': '35', 'type': 'call', 'children': ['36', '41']}; {'id': '36', 'type': 'attribute', 'children': ['37', '40']}, {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'isdir'}, {'id': '41', 'type': 'argument_list', 'children': ['42']}; {'id': '42', 'type': 'call', 'children': ['43', '48']}, {'id': '43', 'type': 'attribute', 'children': ['44', '47']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '48', 'type': 'argument_list', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'simple_dir'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '51', 'type': 'return_statement', 'children': ['52']} | def find_package_indexes_in_dir(self, simple_dir):
packages = sorted(
{
canonicalize_name(x)
for x in os.listdir(simple_dir)
}
)
packages = [x for x in packages if os.path.isdir(os.path.join(simple_dir, x))]
return packages |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '17']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'factorize'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '11', '14']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'train'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'test'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'features'}, {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'na_value'}, {'id': '9', 'type': 'unary_operator', 'children': ['10'], 'value': '-'}; {'id': '10', 'type': 'integer', 'children': [], 'value': '9999'}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'full'}, {'id': '13', 'type': 'False', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '16', 'type': 'True', 'children': []}, {'id': '17', 'type': 'block', 'children': ['18', '134']}; {'id': '18', 'type': 'for_statement', 'children': ['19', '20', '21']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'column'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'features'}, {'id': '21', 'type': 'block', 'children': ['22', '72', '85', '98']}; {'id': '22', 'type': 'if_statement', 'children': ['23', '24', '54']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'full'}; {'id': '24', 'type': 'block', 'children': ['25', '40']}, {'id': '25', 'type': 'expression_statement', 'children': ['26']}; {'id': '26', 'type': 'assignment', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'vs'}; {'id': '28', 'type': 'call', 'children': ['29', '32']}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'pd'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'concat'}; {'id': '32', 'type': 'argument_list', 'children': ['33']}, {'id': '33', 'type': 'list', 'children': ['34', '37'], 'value': '[train[column], test[column]]'}; {'id': '34', 'type': 'subscript', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'train'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'column'}, {'id': '37', 'type': 'subscript', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'test'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'column'}; {'id': '40', 'type': 'expression_statement', 'children': ['41']}, {'id': '41', 'type': 'assignment', 'children': ['42', '45']}; {'id': '42', 'type': 'pattern_list', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'labels'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'indexer'}, {'id': '45', 'type': 'call', 'children': ['46', '49']}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'pd'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'factorize'}, {'id': '49', 'type': 'argument_list', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'vs'}, {'id': '51', 'type': 'keyword_argument', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '54', 'type': 'else_clause', 'children': ['55']}, {'id': '55', 'type': 'block', 'children': ['56']}; {'id': '56', 'type': 'expression_statement', 'children': ['57']}, {'id': '57', 'type': 'assignment', 'children': ['58', '61']}; {'id': '58', 'type': 'pattern_list', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'labels'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'indexer'}, {'id': '61', 'type': 'call', 'children': ['62', '65']}; {'id': '62', 'type': 'attribute', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'pd'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'factorize'}, {'id': '65', 'type': 'argument_list', 'children': ['66', '69']}; {'id': '66', 'type': 'subscript', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'train'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'column'}, {'id': '69', 'type': 'keyword_argument', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '72', 'type': 'expression_statement', 'children': ['73']}, {'id': '73', 'type': 'assignment', 'children': ['74', '77']}; {'id': '74', 'type': 'subscript', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'train'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'column'}, {'id': '77', 'type': 'call', 'children': ['78', '81']}; {'id': '78', 'type': 'attribute', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'indexer'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'get_indexer'}, {'id': '81', 'type': 'argument_list', 'children': ['82']}; {'id': '82', 'type': 'subscript', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'train'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'column'}, {'id': '85', 'type': 'expression_statement', 'children': ['86']}; {'id': '86', 'type': 'assignment', 'children': ['87', '90']}, {'id': '87', 'type': 'subscript', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'test'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'column'}; {'id': '90', 'type': 'call', 'children': ['91', '94']}, {'id': '91', 'type': 'attribute', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'indexer'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'get_indexer'}; {'id': '94', 'type': 'argument_list', 'children': ['95']}, {'id': '95', 'type': 'subscript', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'test'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'column'}; {'id': '98', 'type': 'if_statement', 'children': ['99', '103']}, {'id': '99', 'type': 'comparison_operator', 'children': ['100', '101'], 'value': '!='}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'na_value'}, {'id': '101', 'type': 'unary_operator', 'children': ['102'], 'value': '-'}; {'id': '102', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '103', 'type': 'block', 'children': ['104', '119']}; {'id': '104', 'type': 'expression_statement', 'children': ['105']}, {'id': '105', 'type': 'assignment', 'children': ['106', '109']}; {'id': '106', 'type': 'subscript', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'train'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'column'}, {'id': '109', 'type': 'call', 'children': ['110', '115']}; {'id': '110', 'type': 'attribute', 'children': ['111', '114']}, {'id': '111', 'type': 'subscript', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'train'}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'column'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'replace'}, {'id': '115', 'type': 'argument_list', 'children': ['116', '118']}; {'id': '116', 'type': 'unary_operator', 'children': ['117'], 'value': '-'}, {'id': '117', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'na_value'}, {'id': '119', 'type': 'expression_statement', 'children': ['120']}; {'id': '120', 'type': 'assignment', 'children': ['121', '124']}, {'id': '121', 'type': 'subscript', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'test'}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'column'}; {'id': '124', 'type': 'call', 'children': ['125', '130']}, {'id': '125', 'type': 'attribute', 'children': ['126', '129']}; {'id': '126', 'type': 'subscript', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'test'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'column'}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'replace'}; {'id': '130', 'type': 'argument_list', 'children': ['131', '133']}, {'id': '131', 'type': 'unary_operator', 'children': ['132'], 'value': '-'}; {'id': '132', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'na_value'}; {'id': '134', 'type': 'return_statement', 'children': ['135']}, {'id': '135', 'type': 'expression_list', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'train'}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'test'} | def factorize(train, test, features, na_value=-9999, full=False, sort=True):
for column in features:
if full:
vs = pd.concat([train[column], test[column]])
labels, indexer = pd.factorize(vs, sort=sort)
else:
labels, indexer = pd.factorize(train[column], sort=sort)
train[column] = indexer.get_indexer(train[column])
test[column] = indexer.get_indexer(test[column])
if na_value != -1:
train[column] = train[column].replace(-1, na_value)
test[column] = test[column].replace(-1, na_value)
return train, test |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'preferred_ordinal'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'attr_name'}; {'id': '6', 'type': 'block', 'children': ['7', '16', '45']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'attr_name'}; {'id': '10', 'type': 'call', 'children': ['11', '14']}, {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'map'}; {'id': '14', 'type': 'argument_list', 'children': ['15']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'attr_name'}; {'id': '16', 'type': 'if_statement', 'children': ['17', '22', '34']}, {'id': '17', 'type': 'comparison_operator', 'children': ['18', '19'], 'value': 'in'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'attr_name'}, {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'preferred_order'}; {'id': '22', 'type': 'block', 'children': ['23']}, {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'ordinal'}; {'id': '26', 'type': 'call', 'children': ['27', '32']}, {'id': '27', 'type': 'attribute', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'preferred_order'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '32', 'type': 'argument_list', 'children': ['33']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'attr_name'}; {'id': '34', 'type': 'else_clause', 'children': ['35']}, {'id': '35', 'type': 'block', 'children': ['36']}; {'id': '36', 'type': 'expression_statement', 'children': ['37']}, {'id': '37', 'type': 'assignment', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'ordinal'}, {'id': '39', 'type': 'call', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '41', 'type': 'argument_list', 'children': ['42']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'preferred_order'}, {'id': '45', 'type': 'return_statement', 'children': ['46']}; {'id': '46', 'type': 'tuple', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'ordinal'} | def preferred_ordinal(cls, attr_name):
attr_name = cls.map(attr_name)
if attr_name in cls.preferred_order:
ordinal = cls.preferred_order.index(attr_name)
else:
ordinal = len(cls.preferred_order)
return (ordinal, attr_name) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'patience_sort'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'xs'}, {'id': '5', 'type': 'block', 'children': ['6', '8', '14']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'string', 'children': [], 'value': '\'\'\'Patience sort an iterable, xs.\n This function generates a series of pairs (x, pile), where "pile"\n is the 0-based index of the pile "x" should be placed on top of.\n Elements of "xs" must be less-than comparable.\n \'\'\''}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}, {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'pile_tops'}, {'id': '11', 'type': 'call', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '13', 'type': 'argument_list', 'children': []}; {'id': '14', 'type': 'for_statement', 'children': ['15', '16', '17']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'xs'}, {'id': '17', 'type': 'block', 'children': ['18', '28', '51']}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}, {'id': '19', 'type': 'assignment', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'pile'}, {'id': '21', 'type': 'call', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'bisect'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'bisect_left'}, {'id': '25', 'type': 'argument_list', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'pile_tops'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '28', 'type': 'if_statement', 'children': ['29', '35', '43']}, {'id': '29', 'type': 'comparison_operator', 'children': ['30', '31'], 'value': '=='}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'pile'}, {'id': '31', 'type': 'call', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '33', 'type': 'argument_list', 'children': ['34']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'pile_tops'}, {'id': '35', 'type': 'block', 'children': ['36']}; {'id': '36', 'type': 'expression_statement', 'children': ['37']}, {'id': '37', 'type': 'call', 'children': ['38', '41']}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'pile_tops'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '41', 'type': 'argument_list', 'children': ['42']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '43', 'type': 'else_clause', 'children': ['44']}; {'id': '44', 'type': 'block', 'children': ['45']}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'assignment', 'children': ['47', '50']}, {'id': '47', 'type': 'subscript', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'pile_tops'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'pile'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'yield', 'children': ['53']}, {'id': '53', 'type': 'expression_list', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'pile'} | def patience_sort(xs):
'''Patience sort an iterable, xs.
This function generates a series of pairs (x, pile), where "pile"
is the 0-based index of the pile "x" should be placed on top of.
Elements of "xs" must be less-than comparable.
'''
pile_tops = list()
for x in xs:
pile = bisect.bisect_left(pile_tops, x)
if pile == len(pile_tops):
pile_tops.append(x)
else:
pile_tops[pile] = x
yield x, pile |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '5', 'type': 'block', 'children': ['6', '15', '31', '42', '61', '66', '80', '90', '98', '169', '189', '201', '207']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '9', 'type': 'call', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'OptionParser'}, {'id': '11', 'type': 'argument_list', 'children': ['12']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': '__doc__'}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'call', 'children': ['17', '20']}, {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'add_option'}; {'id': '20', 'type': 'argument_list', 'children': ['21', '22', '25', '28']}, {'id': '21', 'type': 'string', 'children': [], 'value': '"--sizes"'}; {'id': '22', 'type': 'keyword_argument', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'default'}; {'id': '24', 'type': 'False', 'children': []}, {'id': '25', 'type': 'keyword_argument', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'action'}, {'id': '27', 'type': 'string', 'children': [], 'value': '"store_true"'}; {'id': '28', 'type': 'keyword_argument', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'help'}; {'id': '30', 'type': 'string', 'children': [], 'value': '"Sort by decreasing size [default: %default]"'}, {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'assignment', 'children': ['33', '36']}, {'id': '33', 'type': 'pattern_list', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'opts'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '36', 'type': 'call', 'children': ['37', '40']}, {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'parse_args'}; {'id': '40', 'type': 'argument_list', 'children': ['41']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '42', 'type': 'if_statement', 'children': ['43', '49']}, {'id': '43', 'type': 'comparison_operator', 'children': ['44', '48'], 'value': '!='}; {'id': '44', 'type': 'call', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '46', 'type': 'argument_list', 'children': ['47']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '48', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '49', 'type': 'block', 'children': ['50']}; {'id': '50', 'type': 'expression_statement', 'children': ['51']}, {'id': '51', 'type': 'call', 'children': ['52', '55']}; {'id': '52', 'type': 'attribute', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'exit'}, {'id': '55', 'type': 'argument_list', 'children': ['56']}; {'id': '56', 'type': 'call', 'children': ['57', '60']}, {'id': '57', 'type': 'attribute', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'print_help'}; {'id': '60', 'type': 'argument_list', 'children': []}, {'id': '61', 'type': 'expression_statement', 'children': ['62']}; {'id': '62', 'type': 'assignment', 'children': ['63', '65']}, {'id': '63', 'type': 'pattern_list', 'children': ['64']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'fastafile'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '66', 'type': 'expression_statement', 'children': ['67']}, {'id': '67', 'type': 'assignment', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'sortedfastafile'}, {'id': '69', 'type': 'binary_operator', 'children': ['70', '79'], 'value': '+'}; {'id': '70', 'type': 'subscript', 'children': ['71', '78']}, {'id': '71', 'type': 'call', 'children': ['72', '75']}; {'id': '72', 'type': 'attribute', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'fastafile'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'rsplit'}, {'id': '75', 'type': 'argument_list', 'children': ['76', '77']}; {'id': '76', 'type': 'string', 'children': [], 'value': '"."'}, {'id': '77', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '78', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '79', 'type': 'string', 'children': [], 'value': '".sorted.fasta"'}; {'id': '80', 'type': 'expression_statement', 'children': ['81']}, {'id': '81', 'type': 'assignment', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '83', 'type': 'call', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'Fasta'}, {'id': '85', 'type': 'argument_list', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'fastafile'}, {'id': '87', 'type': 'keyword_argument', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '89', 'type': 'False', 'children': []}; {'id': '90', 'type': 'expression_statement', 'children': ['91']}, {'id': '91', 'type': 'assignment', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'fw'}, {'id': '93', 'type': 'call', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'must_open'}, {'id': '95', 'type': 'argument_list', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'sortedfastafile'}, {'id': '97', 'type': 'string', 'children': [], 'value': '"w"'}; {'id': '98', 'type': 'if_statement', 'children': ['99', '102', '156']}, {'id': '99', 'type': 'attribute', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'opts'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'sizes'}; {'id': '102', 'type': 'block', 'children': ['103', '127', '146']}, {'id': '103', 'type': 'expression_statement', 'children': ['104']}; {'id': '104', 'type': 'assignment', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'sortlist'}; {'id': '106', 'type': 'call', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '108', 'type': 'argument_list', 'children': ['109', '114']}, {'id': '109', 'type': 'call', 'children': ['110', '113']}; {'id': '110', 'type': 'attribute', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'itersizes'}, {'id': '113', 'type': 'argument_list', 'children': []}; {'id': '114', 'type': 'keyword_argument', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '116', 'type': 'lambda', 'children': ['117', '119']}, {'id': '117', 'type': 'lambda_parameters', 'children': ['118']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '119', 'type': 'tuple', 'children': ['120', '124']}; {'id': '120', 'type': 'unary_operator', 'children': ['121'], 'value': '-'}, {'id': '121', 'type': 'subscript', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '123', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '124', 'type': 'subscript', 'children': ['125', '126']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '126', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '127', 'type': 'expression_statement', 'children': ['128']}; {'id': '128', 'type': 'call', 'children': ['129', '132']}, {'id': '129', 'type': 'attribute', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'logging'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'debug'}; {'id': '132', 'type': 'argument_list', 'children': ['133']}, {'id': '133', 'type': 'call', 'children': ['134', '138']}; {'id': '134', 'type': 'attribute', 'children': ['135', '136', '137']}, {'id': '135', 'type': 'string', 'children': [], 'value': '"Sort by size: max: {0}, min: {1}"'}; {'id': '136', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '138', 'type': 'argument_list', 'children': ['139', '142']}, {'id': '139', 'type': 'subscript', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'sortlist'}, {'id': '141', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '142', 'type': 'subscript', 'children': ['143', '144']}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'sortlist'}; {'id': '144', 'type': 'unary_operator', 'children': ['145'], 'value': '-'}, {'id': '145', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '146', 'type': 'expression_statement', 'children': ['147']}, {'id': '147', 'type': 'assignment', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'sortlist'}, {'id': '149', 'type': 'list_comprehension', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '151', 'type': 'for_in_clause', 'children': ['152', '155']}; {'id': '152', 'type': 'pattern_list', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 's'}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'sortlist'}; {'id': '156', 'type': 'else_clause', 'children': ['157']}, {'id': '157', 'type': 'block', 'children': ['158']}; {'id': '158', 'type': 'expression_statement', 'children': ['159']}, {'id': '159', 'type': 'assignment', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'sortlist'}, {'id': '161', 'type': 'call', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '163', 'type': 'argument_list', 'children': ['164']}; {'id': '164', 'type': 'call', 'children': ['165', '168']}, {'id': '165', 'type': 'attribute', 'children': ['166', '167']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'f'}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'iterkeys'}; {'id': '168', 'type': 'argument_list', 'children': []}, {'id': '169', 'type': 'for_statement', 'children': ['170', '171', '172']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'sortlist'}; {'id': '172', 'type': 'block', 'children': ['173', '179']}, {'id': '173', 'type': 'expression_statement', 'children': ['174']}; {'id': '174', 'type': 'assignment', 'children': ['175', '176']}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'rec'}; {'id': '176', 'type': 'subscript', 'children': ['177', '178']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'f'}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '179', 'type': 'expression_statement', 'children': ['180']}; {'id': '180', 'type': 'call', 'children': ['181', '184']}, {'id': '181', 'type': 'attribute', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'SeqIO'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'write'}; {'id': '184', 'type': 'argument_list', 'children': ['185', '187', '188']}, {'id': '185', 'type': 'list', 'children': ['186'], 'value': '[rec]'}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'rec'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'fw'}; {'id': '188', 'type': 'string', 'children': [], 'value': '"fasta"'}, {'id': '189', 'type': 'expression_statement', 'children': ['190']}; {'id': '190', 'type': 'call', 'children': ['191', '194']}, {'id': '191', 'type': 'attribute', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'logging'}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'debug'}; {'id': '194', 'type': 'argument_list', 'children': ['195']}, {'id': '195', 'type': 'call', 'children': ['196', '199']}; {'id': '196', 'type': 'attribute', 'children': ['197', '198']}, {'id': '197', 'type': 'string', 'children': [], 'value': '"Sorted file written to `{0}`."'}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '199', 'type': 'argument_list', 'children': ['200']}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'sortedfastafile'}, {'id': '201', 'type': 'expression_statement', 'children': ['202']}; {'id': '202', 'type': 'call', 'children': ['203', '206']}, {'id': '203', 'type': 'attribute', 'children': ['204', '205']}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'fw'}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'close'}; {'id': '206', 'type': 'argument_list', 'children': []}, {'id': '207', 'type': 'return_statement', 'children': ['208']} | def sort(args):
p = OptionParser(sort.__doc__)
p.add_option("--sizes", default=False, action="store_true",
help="Sort by decreasing size [default: %default]")
opts, args = p.parse_args(args)
if len(args) != 1:
sys.exit(p.print_help())
fastafile, = args
sortedfastafile = fastafile.rsplit(".", 1)[0] + ".sorted.fasta"
f = Fasta(fastafile, index=False)
fw = must_open(sortedfastafile, "w")
if opts.sizes:
sortlist = sorted(f.itersizes(), key=lambda x: (-x[1], x[0]))
logging.debug("Sort by size: max: {0}, min: {1}".\
format(sortlist[0], sortlist[-1]))
sortlist = [x for x, s in sortlist]
else:
sortlist = sorted(f.iterkeys())
for key in sortlist:
rec = f[key]
SeqIO.write([rec], fw, "fasta")
logging.debug("Sorted file written to `{0}`.".format(sortedfastafile))
fw.close()
return sortedfastafile |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'posmap'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '5', 'type': 'block', 'children': ['6', '15', '26', '45', '52', '62', '68', '85', '91', '100', '106', '119', '125', '146', '152', '172', '178', '197', '203', '209', '238', '244']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '9', 'type': 'call', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'OptionParser'}, {'id': '11', 'type': 'argument_list', 'children': ['12']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'posmap'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': '__doc__'}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '20']}, {'id': '17', 'type': 'pattern_list', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'opts'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '20', 'type': 'call', 'children': ['21', '24']}, {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'parse_args'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '26', 'type': 'if_statement', 'children': ['27', '33']}, {'id': '27', 'type': 'comparison_operator', 'children': ['28', '32'], 'value': '!='}; {'id': '28', 'type': 'call', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '30', 'type': 'argument_list', 'children': ['31']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '32', 'type': 'integer', 'children': [], 'value': '3'}, {'id': '33', 'type': 'block', 'children': ['34']}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}, {'id': '35', 'type': 'call', 'children': ['36', '39']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'exit'}, {'id': '39', 'type': 'argument_list', 'children': ['40']}; {'id': '40', 'type': 'call', 'children': ['41', '44']}, {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'print_help'}; {'id': '44', 'type': 'argument_list', 'children': []}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'assignment', 'children': ['47', '51']}, {'id': '47', 'type': 'pattern_list', 'children': ['48', '49', '50']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'frgscffile'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'fastafile'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'scf'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '52', 'type': 'expression_statement', 'children': ['53']}, {'id': '53', 'type': 'assignment', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'cmd'}, {'id': '55', 'type': 'call', 'children': ['56', '59']}; {'id': '56', 'type': 'attribute', 'children': ['57', '58']}, {'id': '57', 'type': 'string', 'children': [], 'value': '"faOneRecord {0} {1}"'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '59', 'type': 'argument_list', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'fastafile'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'scf'}; {'id': '62', 'type': 'expression_statement', 'children': ['63']}, {'id': '63', 'type': 'assignment', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'scffastafile'}, {'id': '65', 'type': 'binary_operator', 'children': ['66', '67'], 'value': '+'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'scf'}, {'id': '67', 'type': 'string', 'children': [], 'value': '".fasta"'}; {'id': '68', 'type': 'if_statement', 'children': ['69', '76']}, {'id': '69', 'type': 'not_operator', 'children': ['70']}; {'id': '70', 'type': 'call', 'children': ['71', '74']}, {'id': '71', 'type': 'attribute', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'op'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'exists'}; {'id': '74', 'type': 'argument_list', 'children': ['75']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'scffastafile'}; {'id': '76', 'type': 'block', 'children': ['77']}, {'id': '77', 'type': 'expression_statement', 'children': ['78']}; {'id': '78', 'type': 'call', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'sh'}; {'id': '80', 'type': 'argument_list', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'cmd'}; {'id': '82', 'type': 'keyword_argument', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'outfile'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'scffastafile'}, {'id': '85', 'type': 'expression_statement', 'children': ['86']}; {'id': '86', 'type': 'assignment', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'sizesfile'}; {'id': '88', 'type': 'binary_operator', 'children': ['89', '90'], 'value': '+'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'scffastafile'}; {'id': '90', 'type': 'string', 'children': [], 'value': '".sizes"'}, {'id': '91', 'type': 'expression_statement', 'children': ['92']}; {'id': '92', 'type': 'assignment', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'sizes'}; {'id': '94', 'type': 'attribute', 'children': ['95', '99']}, {'id': '95', 'type': 'call', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'Sizes'}, {'id': '97', 'type': 'argument_list', 'children': ['98']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'scffastafile'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'mapping'}; {'id': '100', 'type': 'expression_statement', 'children': ['101']}, {'id': '101', 'type': 'assignment', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'scfsize'}, {'id': '103', 'type': 'subscript', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'sizes'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'scf'}; {'id': '106', 'type': 'expression_statement', 'children': ['107']}, {'id': '107', 'type': 'call', 'children': ['108', '111']}; {'id': '108', 'type': 'attribute', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'logging'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'debug'}, {'id': '111', 'type': 'argument_list', 'children': ['112']}; {'id': '112', 'type': 'call', 'children': ['113', '116']}, {'id': '113', 'type': 'attribute', 'children': ['114', '115']}; {'id': '114', 'type': 'string', 'children': [], 'value': '"`{0}` has length of {1}."'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '116', 'type': 'argument_list', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'scf'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'scfsize'}, {'id': '119', 'type': 'expression_statement', 'children': ['120']}; {'id': '120', 'type': 'assignment', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'gapsbedfile'}; {'id': '122', 'type': 'binary_operator', 'children': ['123', '124'], 'value': '+'}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'scf'}; {'id': '124', 'type': 'string', 'children': [], 'value': '".gaps.bed"'}, {'id': '125', 'type': 'if_statement', 'children': ['126', '133']}; {'id': '126', 'type': 'not_operator', 'children': ['127']}, {'id': '127', 'type': 'call', 'children': ['128', '131']}; {'id': '128', 'type': 'attribute', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'op'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'exists'}, {'id': '131', 'type': 'argument_list', 'children': ['132']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'gapsbedfile'}, {'id': '133', 'type': 'block', 'children': ['134', '141']}; {'id': '134', 'type': 'expression_statement', 'children': ['135']}, {'id': '135', 'type': 'assignment', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '137', 'type': 'list', 'children': ['138', '139', '140'], 'value': '[scffastafile, "--bed", "--mingap=100"]'}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'scffastafile'}, {'id': '139', 'type': 'string', 'children': [], 'value': '"--bed"'}; {'id': '140', 'type': 'string', 'children': [], 'value': '"--mingap=100"'}, {'id': '141', 'type': 'expression_statement', 'children': ['142']}; {'id': '142', 'type': 'call', 'children': ['143', '144']}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'gaps'}; {'id': '144', 'type': 'argument_list', 'children': ['145']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '146', 'type': 'expression_statement', 'children': ['147']}, {'id': '147', 'type': 'assignment', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'posmapfile'}, {'id': '149', 'type': 'binary_operator', 'children': ['150', '151'], 'value': '+'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'scf'}, {'id': '151', 'type': 'string', 'children': [], 'value': '".posmap"'}; {'id': '152', 'type': 'if_statement', 'children': ['153', '160']}, {'id': '153', 'type': 'not_operator', 'children': ['154']}; {'id': '154', 'type': 'call', 'children': ['155', '158']}, {'id': '155', 'type': 'attribute', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'op'}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'exists'}; {'id': '158', 'type': 'argument_list', 'children': ['159']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'posmapfile'}; {'id': '160', 'type': 'block', 'children': ['161', '167']}, {'id': '161', 'type': 'expression_statement', 'children': ['162']}; {'id': '162', 'type': 'assignment', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '164', 'type': 'list', 'children': ['165', '166'], 'value': '[frgscffile, scf]'}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'frgscffile'}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'scf'}, {'id': '167', 'type': 'expression_statement', 'children': ['168']}; {'id': '168', 'type': 'call', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'query'}; {'id': '170', 'type': 'argument_list', 'children': ['171']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '172', 'type': 'expression_statement', 'children': ['173']}, {'id': '173', 'type': 'assignment', 'children': ['174', '175']}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'bedfile'}, {'id': '175', 'type': 'binary_operator', 'children': ['176', '177'], 'value': '+'}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'scf'}, {'id': '177', 'type': 'string', 'children': [], 'value': '".bed"'}; {'id': '178', 'type': 'if_statement', 'children': ['179', '186']}, {'id': '179', 'type': 'not_operator', 'children': ['180']}; {'id': '180', 'type': 'call', 'children': ['181', '184']}, {'id': '181', 'type': 'attribute', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'op'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'exists'}; {'id': '184', 'type': 'argument_list', 'children': ['185']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'bedfile'}; {'id': '186', 'type': 'block', 'children': ['187', '192']}, {'id': '187', 'type': 'expression_statement', 'children': ['188']}; {'id': '188', 'type': 'assignment', 'children': ['189', '190']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '190', 'type': 'list', 'children': ['191'], 'value': '[posmapfile]'}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'posmapfile'}; {'id': '192', 'type': 'expression_statement', 'children': ['193']}, {'id': '193', 'type': 'call', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'bed'}, {'id': '195', 'type': 'argument_list', 'children': ['196']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '197', 'type': 'expression_statement', 'children': ['198']}; {'id': '198', 'type': 'assignment', 'children': ['199', '200']}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'bedpefile'}; {'id': '200', 'type': 'binary_operator', 'children': ['201', '202'], 'value': '+'}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'scf'}; {'id': '202', 'type': 'string', 'children': [], 'value': '".bedpe"'}, {'id': '203', 'type': 'expression_statement', 'children': ['204']}; {'id': '204', 'type': 'assignment', 'children': ['205', '206']}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'pairsbedfile'}; {'id': '206', 'type': 'binary_operator', 'children': ['207', '208'], 'value': '+'}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'scf'}; {'id': '208', 'type': 'string', 'children': [], 'value': '".pairs.bed"'}, {'id': '209', 'type': 'if_statement', 'children': ['210', '225']}; {'id': '210', 'type': 'not_operator', 'children': ['211']}, {'id': '211', 'type': 'parenthesized_expression', 'children': ['212']}; {'id': '212', 'type': 'boolean_operator', 'children': ['213', '219'], 'value': 'and'}, {'id': '213', 'type': 'call', 'children': ['214', '217']}; {'id': '214', 'type': 'attribute', 'children': ['215', '216']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'op'}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'exists'}, {'id': '217', 'type': 'argument_list', 'children': ['218']}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'bedpefile'}, {'id': '219', 'type': 'call', 'children': ['220', '223']}; {'id': '220', 'type': 'attribute', 'children': ['221', '222']}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'op'}; {'id': '222', 'type': 'identifier', 'children': [], 'value': 'exists'}, {'id': '223', 'type': 'argument_list', 'children': ['224']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'pairsbedfile'}, {'id': '225', 'type': 'block', 'children': ['226']}; {'id': '226', 'type': 'expression_statement', 'children': ['227']}, {'id': '227', 'type': 'call', 'children': ['228', '229']}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'bed_to_bedpe'}, {'id': '229', 'type': 'argument_list', 'children': ['230', '231', '232', '235']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'bedfile'}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'bedpefile'}; {'id': '232', 'type': 'keyword_argument', 'children': ['233', '234']}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'pairsbedfile'}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'pairsbedfile'}, {'id': '235', 'type': 'keyword_argument', 'children': ['236', '237']}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'ca'}, {'id': '237', 'type': 'True', 'children': []}; {'id': '238', 'type': 'expression_statement', 'children': ['239']}, {'id': '239', 'type': 'call', 'children': ['240', '241']}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'Coverage'}, {'id': '241', 'type': 'argument_list', 'children': ['242', '243']}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'bedfile'}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'sizesfile'}; {'id': '244', 'type': 'expression_statement', 'children': ['245']}, {'id': '245', 'type': 'call', 'children': ['246', '247']}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'Coverage'}, {'id': '247', 'type': 'argument_list', 'children': ['248', '249']}; {'id': '248', 'type': 'identifier', 'children': [], 'value': 'pairsbedfile'}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'sizesfile'} | def posmap(args):
p = OptionParser(posmap.__doc__)
opts, args = p.parse_args(args)
if len(args) != 3:
sys.exit(p.print_help())
frgscffile, fastafile, scf = args
cmd = "faOneRecord {0} {1}".format(fastafile, scf)
scffastafile = scf + ".fasta"
if not op.exists(scffastafile):
sh(cmd, outfile=scffastafile)
sizesfile = scffastafile + ".sizes"
sizes = Sizes(scffastafile).mapping
scfsize = sizes[scf]
logging.debug("`{0}` has length of {1}.".format(scf, scfsize))
gapsbedfile = scf + ".gaps.bed"
if not op.exists(gapsbedfile):
args = [scffastafile, "--bed", "--mingap=100"]
gaps(args)
posmapfile = scf + ".posmap"
if not op.exists(posmapfile):
args = [frgscffile, scf]
query(args)
bedfile = scf + ".bed"
if not op.exists(bedfile):
args = [posmapfile]
bed(args)
bedpefile = scf + ".bedpe"
pairsbedfile = scf + ".pairs.bed"
if not (op.exists(bedpefile) and op.exists(pairsbedfile)):
bed_to_bedpe(bedfile, bedpefile, pairsbedfile=pairsbedfile, ca=True)
Coverage(bedfile, sizesfile)
Coverage(pairsbedfile, sizesfile) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'shred'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '5', 'type': 'block', 'children': ['6', '15', '26', '46', '51', '58', '64']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '9', 'type': 'call', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'OptionParser'}, {'id': '11', 'type': 'argument_list', 'children': ['12']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'shred'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': '__doc__'}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '20']}, {'id': '17', 'type': 'pattern_list', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'opts'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '20', 'type': 'call', 'children': ['21', '24']}, {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'parse_args'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '26', 'type': 'if_statement', 'children': ['27', '33']}, {'id': '27', 'type': 'comparison_operator', 'children': ['28', '32'], 'value': '!='}; {'id': '28', 'type': 'call', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '30', 'type': 'argument_list', 'children': ['31']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '32', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '33', 'type': 'block', 'children': ['34']}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}, {'id': '35', 'type': 'call', 'children': ['36', '39']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'exit'}, {'id': '39', 'type': 'argument_list', 'children': ['40']}; {'id': '40', 'type': 'not_operator', 'children': ['41']}, {'id': '41', 'type': 'call', 'children': ['42', '45']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'print_help'}, {'id': '45', 'type': 'argument_list', 'children': []}; {'id': '46', 'type': 'expression_statement', 'children': ['47']}, {'id': '47', 'type': 'assignment', 'children': ['48', '50']}; {'id': '48', 'type': 'pattern_list', 'children': ['49']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'assignment', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'u'}; {'id': '54', 'type': 'call', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'UnitigLayout'}; {'id': '56', 'type': 'argument_list', 'children': ['57']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}, {'id': '59', 'type': 'call', 'children': ['60', '63']}; {'id': '60', 'type': 'attribute', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'u'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'shred'}, {'id': '63', 'type': 'argument_list', 'children': []}; {'id': '64', 'type': 'expression_statement', 'children': ['65']}, {'id': '65', 'type': 'call', 'children': ['66', '69']}; {'id': '66', 'type': 'attribute', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'u'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'print_to_file'}, {'id': '69', 'type': 'argument_list', 'children': ['70']}; {'id': '70', 'type': 'keyword_argument', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'inplace'} | def shred(args):
p = OptionParser(shred.__doc__)
opts, args = p.parse_args(args)
if len(args) != 1:
sys.exit(not p.print_help())
s, = args
u = UnitigLayout(s)
u.shred()
u.print_to_file(inplace=True) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'index'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '5', 'type': 'block', 'children': ['6', '15', '26', '45', '50', '56', '65', '82', '88', '97']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '9', 'type': 'call', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'OptionParser'}, {'id': '11', 'type': 'argument_list', 'children': ['12']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': '__doc__'}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '20']}, {'id': '17', 'type': 'pattern_list', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'opts'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '20', 'type': 'call', 'children': ['21', '24']}, {'id': '21', 'type': 'attribute', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'parse_args'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '26', 'type': 'if_statement', 'children': ['27', '33']}, {'id': '27', 'type': 'comparison_operator', 'children': ['28', '32'], 'value': '!='}; {'id': '28', 'type': 'call', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '30', 'type': 'argument_list', 'children': ['31']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '32', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '33', 'type': 'block', 'children': ['34']}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}, {'id': '35', 'type': 'call', 'children': ['36', '39']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'exit'}, {'id': '39', 'type': 'argument_list', 'children': ['40']}; {'id': '40', 'type': 'call', 'children': ['41', '44']}, {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'print_help'}; {'id': '44', 'type': 'argument_list', 'children': []}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'assignment', 'children': ['47', '49']}, {'id': '47', 'type': 'pattern_list', 'children': ['48']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'frgscffile'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '50', 'type': 'expression_statement', 'children': ['51']}, {'id': '51', 'type': 'assignment', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'gzfile'}, {'id': '53', 'type': 'binary_operator', 'children': ['54', '55'], 'value': '+'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'frgscffile'}, {'id': '55', 'type': 'string', 'children': [], 'value': '".gz"'}; {'id': '56', 'type': 'expression_statement', 'children': ['57']}, {'id': '57', 'type': 'assignment', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'cmd'}, {'id': '59', 'type': 'call', 'children': ['60', '63']}; {'id': '60', 'type': 'attribute', 'children': ['61', '62']}, {'id': '61', 'type': 'string', 'children': [], 'value': '"bgzip -c {0}"'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '63', 'type': 'argument_list', 'children': ['64']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'frgscffile'}, {'id': '65', 'type': 'if_statement', 'children': ['66', '73']}; {'id': '66', 'type': 'not_operator', 'children': ['67']}, {'id': '67', 'type': 'call', 'children': ['68', '71']}; {'id': '68', 'type': 'attribute', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'op'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'exists'}, {'id': '71', 'type': 'argument_list', 'children': ['72']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'gzfile'}, {'id': '73', 'type': 'block', 'children': ['74']}; {'id': '74', 'type': 'expression_statement', 'children': ['75']}, {'id': '75', 'type': 'call', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'sh'}, {'id': '77', 'type': 'argument_list', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'cmd'}, {'id': '79', 'type': 'keyword_argument', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'outfile'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'gzfile'}; {'id': '82', 'type': 'expression_statement', 'children': ['83']}, {'id': '83', 'type': 'assignment', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'tbifile'}, {'id': '85', 'type': 'binary_operator', 'children': ['86', '87'], 'value': '+'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'gzfile'}, {'id': '87', 'type': 'string', 'children': [], 'value': '".tbi"'}; {'id': '88', 'type': 'expression_statement', 'children': ['89']}, {'id': '89', 'type': 'assignment', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'cmd'}, {'id': '91', 'type': 'call', 'children': ['92', '95']}; {'id': '92', 'type': 'attribute', 'children': ['93', '94']}, {'id': '93', 'type': 'string', 'children': [], 'value': '"tabix -s 2 -b 3 -e 4 {0}"'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '95', 'type': 'argument_list', 'children': ['96']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'gzfile'}, {'id': '97', 'type': 'if_statement', 'children': ['98', '105']}; {'id': '98', 'type': 'not_operator', 'children': ['99']}, {'id': '99', 'type': 'call', 'children': ['100', '103']}; {'id': '100', 'type': 'attribute', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'op'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'exists'}, {'id': '103', 'type': 'argument_list', 'children': ['104']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'tbifile'}, {'id': '105', 'type': 'block', 'children': ['106']}; {'id': '106', 'type': 'expression_statement', 'children': ['107']}, {'id': '107', 'type': 'call', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'sh'}, {'id': '109', 'type': 'argument_list', 'children': ['110']} | def index(args):
p = OptionParser(index.__doc__)
opts, args = p.parse_args(args)
if len(args) != 1:
sys.exit(p.print_help())
frgscffile, = args
gzfile = frgscffile + ".gz"
cmd = "bgzip -c {0}".format(frgscffile)
if not op.exists(gzfile):
sh(cmd, outfile=gzfile)
tbifile = gzfile + ".tbi"
cmd = "tabix -s 2 -b 3 -e 4 {0}".format(gzfile)
if not op.exists(tbifile):
sh(cmd) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '5', 'type': 'block', 'children': ['6', '12', '21', '37', '56', '62', '68', '75', '86', '106', '111', '117', '157']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'valid_sort_methods'}, {'id': '9', 'type': 'tuple', 'children': ['10', '11']}; {'id': '10', 'type': 'string', 'children': [], 'value': '"unix"'}, {'id': '11', 'type': 'string', 'children': [], 'value': '"topo"'}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}, {'id': '13', 'type': 'assignment', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '15', 'type': 'call', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'OptionParser'}, {'id': '17', 'type': 'argument_list', 'children': ['18']}; {'id': '18', 'type': 'attribute', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': '__doc__'}, {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'call', 'children': ['23', '26']}, {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'add_option'}; {'id': '26', 'type': 'argument_list', 'children': ['27', '28', '31', '34']}, {'id': '27', 'type': 'string', 'children': [], 'value': '"--method"'}; {'id': '28', 'type': 'keyword_argument', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'default'}; {'id': '30', 'type': 'string', 'children': [], 'value': '"unix"'}, {'id': '31', 'type': 'keyword_argument', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'choices'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'valid_sort_methods'}; {'id': '34', 'type': 'keyword_argument', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'help'}; {'id': '36', 'type': 'string', 'children': [], 'value': '"Specify sort method [default: %default]"'}, {'id': '37', 'type': 'expression_statement', 'children': ['38']}; {'id': '38', 'type': 'call', 'children': ['39', '42']}, {'id': '39', 'type': 'attribute', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'add_option'}; {'id': '42', 'type': 'argument_list', 'children': ['43', '44', '47', '50', '53']}, {'id': '43', 'type': 'string', 'children': [], 'value': '"-i"'}; {'id': '44', 'type': 'keyword_argument', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'dest'}; {'id': '46', 'type': 'string', 'children': [], 'value': '"inplace"'}, {'id': '47', 'type': 'keyword_argument', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'default'}, {'id': '49', 'type': 'False', 'children': []}; {'id': '50', 'type': 'keyword_argument', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'action'}; {'id': '52', 'type': 'string', 'children': [], 'value': '"store_true"'}, {'id': '53', 'type': 'keyword_argument', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'help'}, {'id': '55', 'type': 'string', 'children': [], 'value': '"If doing a unix sort, perform sort inplace [default: %default]"'}; {'id': '56', 'type': 'expression_statement', 'children': ['57']}, {'id': '57', 'type': 'call', 'children': ['58', '61']}; {'id': '58', 'type': 'attribute', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'set_tmpdir'}, {'id': '61', 'type': 'argument_list', 'children': []}; {'id': '62', 'type': 'expression_statement', 'children': ['63']}, {'id': '63', 'type': 'call', 'children': ['64', '67']}; {'id': '64', 'type': 'attribute', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'set_outfile'}, {'id': '67', 'type': 'argument_list', 'children': []}; {'id': '68', 'type': 'expression_statement', 'children': ['69']}, {'id': '69', 'type': 'call', 'children': ['70', '73']}; {'id': '70', 'type': 'attribute', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'set_home'}, {'id': '73', 'type': 'argument_list', 'children': ['74']}; {'id': '74', 'type': 'string', 'children': [], 'value': '"gt"'}, {'id': '75', 'type': 'expression_statement', 'children': ['76']}; {'id': '76', 'type': 'assignment', 'children': ['77', '80']}, {'id': '77', 'type': 'pattern_list', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'opts'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '80', 'type': 'call', 'children': ['81', '84']}, {'id': '81', 'type': 'attribute', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'parse_args'}; {'id': '84', 'type': 'argument_list', 'children': ['85']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '86', 'type': 'if_statement', 'children': ['87', '93']}, {'id': '87', 'type': 'comparison_operator', 'children': ['88', '92'], 'value': '!='}; {'id': '88', 'type': 'call', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '90', 'type': 'argument_list', 'children': ['91']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '92', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '93', 'type': 'block', 'children': ['94']}; {'id': '94', 'type': 'expression_statement', 'children': ['95']}, {'id': '95', 'type': 'call', 'children': ['96', '99']}; {'id': '96', 'type': 'attribute', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'exit'}, {'id': '99', 'type': 'argument_list', 'children': ['100']}; {'id': '100', 'type': 'not_operator', 'children': ['101']}, {'id': '101', 'type': 'call', 'children': ['102', '105']}; {'id': '102', 'type': 'attribute', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'print_help'}, {'id': '105', 'type': 'argument_list', 'children': []}; {'id': '106', 'type': 'expression_statement', 'children': ['107']}, {'id': '107', 'type': 'assignment', 'children': ['108', '110']}; {'id': '108', 'type': 'pattern_list', 'children': ['109']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'gffile'}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '111', 'type': 'expression_statement', 'children': ['112']}; {'id': '112', 'type': 'assignment', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'sortedgff'}; {'id': '114', 'type': 'attribute', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'opts'}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'outfile'}, {'id': '117', 'type': 'if_statement', 'children': ['118', '121']}; {'id': '118', 'type': 'attribute', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'opts'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'inplace'}, {'id': '121', 'type': 'block', 'children': ['122']}; {'id': '122', 'type': 'if_statement', 'children': ['123', '141']}, {'id': '123', 'type': 'boolean_operator', 'children': ['124', '129'], 'value': 'or'}; {'id': '124', 'type': 'comparison_operator', 'children': ['125', '128'], 'value': '=='}, {'id': '125', 'type': 'attribute', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'opts'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'method'}; {'id': '128', 'type': 'string', 'children': [], 'value': '"topo"'}, {'id': '129', 'type': 'parenthesized_expression', 'children': ['130']}; {'id': '130', 'type': 'boolean_operator', 'children': ['131', '136'], 'value': 'and'}, {'id': '131', 'type': 'comparison_operator', 'children': ['132', '135'], 'value': '=='}; {'id': '132', 'type': 'attribute', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'opts'}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'method'}, {'id': '135', 'type': 'string', 'children': [], 'value': '"unix"'}; {'id': '136', 'type': 'comparison_operator', 'children': ['137', '138'], 'value': 'in'}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'gffile'}; {'id': '138', 'type': 'tuple', 'children': ['139', '140']}, {'id': '139', 'type': 'string', 'children': [], 'value': '"-"'}; {'id': '140', 'type': 'string', 'children': [], 'value': '"stdin"'}, {'id': '141', 'type': 'block', 'children': ['142', '151']}; {'id': '142', 'type': 'expression_statement', 'children': ['143']}, {'id': '143', 'type': 'call', 'children': ['144', '147']}; {'id': '144', 'type': 'attribute', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'logging'}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'error'}, {'id': '147', 'type': 'argument_list', 'children': ['148']}; {'id': '148', 'type': 'binary_operator', 'children': ['149', '150'], 'value': '+'}, {'id': '149', 'type': 'string', 'children': [], 'value': '"Cannot perform inplace sort when method is `topo`"'}; {'id': '150', 'type': 'string', 'children': [], 'value': '" or method is `unix` and input is `stdin` stream"'}, {'id': '151', 'type': 'expression_statement', 'children': ['152']}; {'id': '152', 'type': 'call', 'children': ['153', '156']}, {'id': '153', 'type': 'attribute', 'children': ['154', '155']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'sys'}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'exit'}; {'id': '156', 'type': 'argument_list', 'children': []}, {'id': '157', 'type': 'if_statement', 'children': ['158', '163', '216']}; {'id': '158', 'type': 'comparison_operator', 'children': ['159', '162'], 'value': '=='}, {'id': '159', 'type': 'attribute', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'opts'}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'method'}; {'id': '162', 'type': 'string', 'children': [], 'value': '"unix"'}, {'id': '163', 'type': 'block', 'children': ['164', '168', '177', '193', '208']}; {'id': '164', 'type': 'expression_statement', 'children': ['165']}, {'id': '165', 'type': 'assignment', 'children': ['166', '167']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'cmd'}, {'id': '167', 'type': 'string', 'children': [], 'value': '"sort"'}; {'id': '168', 'type': 'expression_statement', 'children': ['169']}, {'id': '169', 'type': 'augmented_assignment', 'children': ['170', '171'], 'value': '+='}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'cmd'}, {'id': '171', 'type': 'call', 'children': ['172', '175']}; {'id': '172', 'type': 'attribute', 'children': ['173', '174']}, {'id': '173', 'type': 'string', 'children': [], 'value': '" -k1,1 -k4,4n {0}"'}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '175', 'type': 'argument_list', 'children': ['176']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'gffile'}, {'id': '177', 'type': 'if_statement', 'children': ['178', '181']}; {'id': '178', 'type': 'attribute', 'children': ['179', '180']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'opts'}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'tmpdir'}, {'id': '181', 'type': 'block', 'children': ['182']}; {'id': '182', 'type': 'expression_statement', 'children': ['183']}, {'id': '183', 'type': 'augmented_assignment', 'children': ['184', '185'], 'value': '+='}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'cmd'}, {'id': '185', 'type': 'call', 'children': ['186', '189']}; {'id': '186', 'type': 'attribute', 'children': ['187', '188']}, {'id': '187', 'type': 'string', 'children': [], 'value': '" -T {0}"'}; {'id': '188', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '189', 'type': 'argument_list', 'children': ['190']}; {'id': '190', 'type': 'attribute', 'children': ['191', '192']}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'opts'}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'tmpdir'}, {'id': '193', 'type': 'if_statement', 'children': ['194', '197']}; {'id': '194', 'type': 'attribute', 'children': ['195', '196']}, {'id': '195', 'type': 'identifier', 'children': [], 'value': 'opts'}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'inplace'}, {'id': '197', 'type': 'block', 'children': ['198', '204']}; {'id': '198', 'type': 'expression_statement', 'children': ['199']}, {'id': '199', 'type': 'augmented_assignment', 'children': ['200', '201'], 'value': '+='}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'cmd'}, {'id': '201', 'type': 'attribute', 'children': ['202', '203']}; {'id': '202', 'type': 'string', 'children': [], 'value': '" -o {0}"'}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'gffile'}; {'id': '204', 'type': 'expression_statement', 'children': ['205']}, {'id': '205', 'type': 'assignment', 'children': ['206', '207']}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'sortedgff'}, {'id': '207', 'type': 'None', 'children': []}; {'id': '208', 'type': 'expression_statement', 'children': ['209']}, {'id': '209', 'type': 'call', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'sh'}, {'id': '211', 'type': 'argument_list', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'cmd'}, {'id': '213', 'type': 'keyword_argument', 'children': ['214', '215']}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'outfile'}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'sortedgff'}; {'id': '216', 'type': 'elif_clause', 'children': ['217', '222']}, {'id': '217', 'type': 'comparison_operator', 'children': ['218', '221'], 'value': '=='}; {'id': '218', 'type': 'attribute', 'children': ['219', '220']}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'opts'}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'method'}, {'id': '221', 'type': 'string', 'children': [], 'value': '"topo"'}; {'id': '222', 'type': 'block', 'children': ['223', '229', '256', '272', '281']}, {'id': '223', 'type': 'expression_statement', 'children': ['224']}; {'id': '224', 'type': 'assignment', 'children': ['225', '226']}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'GT_HOME'}; {'id': '226', 'type': 'attribute', 'children': ['227', '228']}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'opts'}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'gt_home'}, {'id': '229', 'type': 'if_statement', 'children': ['230', '237']}; {'id': '230', 'type': 'not_operator', 'children': ['231']}, {'id': '231', 'type': 'call', 'children': ['232', '235']}; {'id': '232', 'type': 'attribute', 'children': ['233', '234']}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'op'}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'isdir'}, {'id': '235', 'type': 'argument_list', 'children': ['236']}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'GT_HOME'}, {'id': '237', 'type': 'block', 'children': ['238', '250']}; {'id': '238', 'type': 'expression_statement', 'children': ['239']}, {'id': '239', 'type': 'call', 'children': ['240', '243']}; {'id': '240', 'type': 'attribute', 'children': ['241', '242']}, {'id': '241', 'type': 'identifier', 'children': [], 'value': 'logging'}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'error'}, {'id': '243', 'type': 'argument_list', 'children': ['244']}; {'id': '244', 'type': 'call', 'children': ['245', '248']}, {'id': '245', 'type': 'attribute', 'children': ['246', '247']}; {'id': '246', 'type': 'string', 'children': [], 'value': '"GT_HOME={0} directory does not exist"'}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '248', 'type': 'argument_list', 'children': ['249']}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'GT_HOME'}; {'id': '250', 'type': 'expression_statement', 'children': ['251']}, {'id': '251', 'type': 'call', 'children': ['252', '255']}; {'id': '252', 'type': 'attribute', 'children': ['253', '254']}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '254', 'type': 'identifier', 'children': [], 'value': 'exit'}, {'id': '255', 'type': 'argument_list', 'children': []}; {'id': '256', 'type': 'expression_statement', 'children': ['257']}, {'id': '257', 'type': 'assignment', 'children': ['258', '259']}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'cmd'}, {'id': '259', 'type': 'call', 'children': ['260', '263']}; {'id': '260', 'type': 'attribute', 'children': ['261', '262']}, {'id': '261', 'type': 'string', 'children': [], 'value': '"{0}"'}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '263', 'type': 'argument_list', 'children': ['264']}; {'id': '264', 'type': 'call', 'children': ['265', '268']}, {'id': '265', 'type': 'attribute', 'children': ['266', '267']}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'op'}, {'id': '267', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '268', 'type': 'argument_list', 'children': ['269', '270', '271']}, {'id': '269', 'type': 'identifier', 'children': [], 'value': 'GT_HOME'}; {'id': '270', 'type': 'string', 'children': [], 'value': '"bin"'}, {'id': '271', 'type': 'string', 'children': [], 'value': '"gt"'}; {'id': '272', 'type': 'expression_statement', 'children': ['273']}, {'id': '273', 'type': 'augmented_assignment', 'children': ['274', '275'], 'value': '+='}; {'id': '274', 'type': 'identifier', 'children': [], 'value': 'cmd'}, {'id': '275', 'type': 'call', 'children': ['276', '279']}; {'id': '276', 'type': 'attribute', 'children': ['277', '278']}, {'id': '277', 'type': 'string', 'children': [], 'value': '" gff3 -sort -tidy -retainids -addids no {0}"'}; {'id': '278', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '279', 'type': 'argument_list', 'children': ['280']}; {'id': '280', 'type': 'identifier', 'children': [], 'value': 'gffile'}, {'id': '281', 'type': 'expression_statement', 'children': ['282']}; {'id': '282', 'type': 'call', 'children': ['283', '284']}, {'id': '283', 'type': 'identifier', 'children': [], 'value': 'sh'}; {'id': '284', 'type': 'argument_list', 'children': ['285', '286']}, {'id': '285', 'type': 'identifier', 'children': [], 'value': 'cmd'}; {'id': '286', 'type': 'keyword_argument', 'children': ['287', '288']}, {'id': '287', 'type': 'identifier', 'children': [], 'value': 'outfile'} | def sort(args):
valid_sort_methods = ("unix", "topo")
p = OptionParser(sort.__doc__)
p.add_option("--method", default="unix", choices=valid_sort_methods,
help="Specify sort method [default: %default]")
p.add_option("-i", dest="inplace", default=False, action="store_true",
help="If doing a unix sort, perform sort inplace [default: %default]")
p.set_tmpdir()
p.set_outfile()
p.set_home("gt")
opts, args = p.parse_args(args)
if len(args) != 1:
sys.exit(not p.print_help())
gffile, = args
sortedgff = opts.outfile
if opts.inplace:
if opts.method == "topo" or (opts.method == "unix" and gffile in ("-", "stdin")):
logging.error("Cannot perform inplace sort when method is `topo`" + \
" or method is `unix` and input is `stdin` stream")
sys.exit()
if opts.method == "unix":
cmd = "sort"
cmd += " -k1,1 -k4,4n {0}".format(gffile)
if opts.tmpdir:
cmd += " -T {0}".format(opts.tmpdir)
if opts.inplace:
cmd += " -o {0}".gffile
sortedgff = None
sh(cmd, outfile=sortedgff)
elif opts.method == "topo":
GT_HOME = opts.gt_home
if not op.isdir(GT_HOME):
logging.error("GT_HOME={0} directory does not exist".format(GT_HOME))
sys.exit()
cmd = "{0}".format(op.join(GT_HOME, "bin", "gt"))
cmd += " gff3 -sort -tidy -retainids -addids no {0}".format(gffile)
sh(cmd, outfile=sortedgff) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '9']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_layout'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'thread'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'listfile'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'column'}; {'id': '8', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '9', 'type': 'block', 'children': ['10', '17', '31', '37', '45', '58', '62', '68', '104', '114', '127', '143', '150', '181', '198', '204']}; {'id': '10', 'type': 'import_from_statement', 'children': ['11', '15']}, {'id': '11', 'type': 'dotted_name', 'children': ['12', '13', '14']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'jcvi'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'formats'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'base'}, {'id': '15', 'type': 'dotted_name', 'children': ['16']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'DictFile'}, {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'assignment', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'outfile'}; {'id': '20', 'type': 'binary_operator', 'children': ['21', '30'], 'value': '+'}, {'id': '21', 'type': 'subscript', 'children': ['22', '29']}; {'id': '22', 'type': 'call', 'children': ['23', '26']}, {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'listfile'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'rsplit'}; {'id': '26', 'type': 'argument_list', 'children': ['27', '28']}, {'id': '27', 'type': 'string', 'children': [], 'value': '"."'}; {'id': '28', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '29', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '30', 'type': 'string', 'children': [], 'value': '".sorted.list"'}, {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'assignment', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'threadorder'}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'thread'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'order'}, {'id': '37', 'type': 'expression_statement', 'children': ['38']}; {'id': '38', 'type': 'assignment', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'fw'}; {'id': '40', 'type': 'call', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '42', 'type': 'argument_list', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'outfile'}; {'id': '44', 'type': 'string', 'children': [], 'value': '"w"'}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'assignment', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'lt'}; {'id': '48', 'type': 'call', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'DictFile'}; {'id': '50', 'type': 'argument_list', 'children': ['51', '52', '55']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'listfile'}; {'id': '52', 'type': 'keyword_argument', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'keypos'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'column'}, {'id': '55', 'type': 'keyword_argument', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'valuepos'}, {'id': '57', 'type': 'None', 'children': []}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}, {'id': '59', 'type': 'assignment', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'threaded'}, {'id': '61', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '62', 'type': 'expression_statement', 'children': ['63']}, {'id': '63', 'type': 'assignment', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'imported'}, {'id': '65', 'type': 'call', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '67', 'type': 'argument_list', 'children': []}; {'id': '68', 'type': 'for_statement', 'children': ['69', '70', '71']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 't'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'thread'}, {'id': '71', 'type': 'block', 'children': ['72', '78', '84', '91', '97']}; {'id': '72', 'type': 'expression_statement', 'children': ['73']}, {'id': '73', 'type': 'assignment', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'accn'}, {'id': '75', 'type': 'attribute', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 't'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'accn'}; {'id': '78', 'type': 'if_statement', 'children': ['79', '82']}, {'id': '79', 'type': 'comparison_operator', 'children': ['80', '81'], 'value': 'not'}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'accn'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'lt'}; {'id': '82', 'type': 'block', 'children': ['83']}, {'id': '83', 'type': 'continue_statement', 'children': []}; {'id': '84', 'type': 'expression_statement', 'children': ['85']}, {'id': '85', 'type': 'call', 'children': ['86', '89']}; {'id': '86', 'type': 'attribute', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'imported'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'add'}, {'id': '89', 'type': 'argument_list', 'children': ['90']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'accn'}, {'id': '91', 'type': 'expression_statement', 'children': ['92']}; {'id': '92', 'type': 'assignment', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'atoms'}; {'id': '94', 'type': 'subscript', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'lt'}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'accn'}, {'id': '97', 'type': 'expression_statement', 'children': ['98']}; {'id': '98', 'type': 'call', 'children': ['99', '102']}, {'id': '99', 'type': 'attribute', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'threaded'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '102', 'type': 'argument_list', 'children': ['103']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'atoms'}; {'id': '104', 'type': 'assert_statement', 'children': ['105']}, {'id': '105', 'type': 'comparison_operator', 'children': ['106', '110'], 'value': '=='}; {'id': '106', 'type': 'call', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '108', 'type': 'argument_list', 'children': ['109']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'threaded'}; {'id': '110', 'type': 'call', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '112', 'type': 'argument_list', 'children': ['113']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'imported'}; {'id': '114', 'type': 'expression_statement', 'children': ['115']}, {'id': '115', 'type': 'assignment', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'total'}, {'id': '117', 'type': 'call', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'sum'}, {'id': '119', 'type': 'generator_expression', 'children': ['120', '121']}; {'id': '120', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '121', 'type': 'for_in_clause', 'children': ['122', '123']}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '123', 'type': 'call', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'open'}, {'id': '125', 'type': 'argument_list', 'children': ['126']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'listfile'}, {'id': '127', 'type': 'expression_statement', 'children': ['128']}; {'id': '128', 'type': 'call', 'children': ['129', '132']}, {'id': '129', 'type': 'attribute', 'children': ['130', '131']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'logging'}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'debug'}; {'id': '132', 'type': 'argument_list', 'children': ['133']}, {'id': '133', 'type': 'call', 'children': ['134', '137']}; {'id': '134', 'type': 'attribute', 'children': ['135', '136']}, {'id': '135', 'type': 'string', 'children': [], 'value': '"Total: {0}, currently threaded: {1}"'}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '137', 'type': 'argument_list', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'total'}, {'id': '139', 'type': 'call', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '141', 'type': 'argument_list', 'children': ['142']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'threaded'}, {'id': '143', 'type': 'expression_statement', 'children': ['144']}; {'id': '144', 'type': 'assignment', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'fp'}; {'id': '146', 'type': 'call', 'children': ['147', '148']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '148', 'type': 'argument_list', 'children': ['149']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'listfile'}; {'id': '150', 'type': 'for_statement', 'children': ['151', '152', '153']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'row'}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'fp'}, {'id': '153', 'type': 'block', 'children': ['154', '162', '168', '174']}; {'id': '154', 'type': 'expression_statement', 'children': ['155']}, {'id': '155', 'type': 'assignment', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'atoms'}, {'id': '157', 'type': 'call', 'children': ['158', '161']}; {'id': '158', 'type': 'attribute', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'row'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'split'}, {'id': '161', 'type': 'argument_list', 'children': []}; {'id': '162', 'type': 'expression_statement', 'children': ['163']}, {'id': '163', 'type': 'assignment', 'children': ['164', '165']}; {'id': '164', 'type': 'identifier', 'children': [], 'value': 'accn'}, {'id': '165', 'type': 'subscript', 'children': ['166', '167']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'atoms'}, {'id': '167', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '168', 'type': 'if_statement', 'children': ['169', '172']}, {'id': '169', 'type': 'comparison_operator', 'children': ['170', '171'], 'value': 'in'}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'accn'}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'imported'}; {'id': '172', 'type': 'block', 'children': ['173']}, {'id': '173', 'type': 'continue_statement', 'children': []}; {'id': '174', 'type': 'expression_statement', 'children': ['175']}, {'id': '175', 'type': 'call', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'insert_into_threaded'}, {'id': '177', 'type': 'argument_list', 'children': ['178', '179', '180']}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'atoms'}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'threaded'}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'threadorder'}, {'id': '181', 'type': 'for_statement', 'children': ['182', '183', '184']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'atoms'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'threaded'}; {'id': '184', 'type': 'block', 'children': ['185']}, {'id': '185', 'type': 'expression_statement', 'children': ['186']}; {'id': '186', 'type': 'call', 'children': ['187', '188']}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '188', 'type': 'argument_list', 'children': ['189', '195']}, {'id': '189', 'type': 'call', 'children': ['190', '193']}; {'id': '190', 'type': 'attribute', 'children': ['191', '192']}, {'id': '191', 'type': 'string', 'children': [], 'value': '"\\t"'}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '193', 'type': 'argument_list', 'children': ['194']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'atoms'}, {'id': '195', 'type': 'keyword_argument', 'children': ['196', '197']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'file'}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'fw'}; {'id': '198', 'type': 'expression_statement', 'children': ['199']}, {'id': '199', 'type': 'call', 'children': ['200', '203']}; {'id': '200', 'type': 'attribute', 'children': ['201', '202']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'fw'}; {'id': '202', 'type': 'identifier', 'children': [], 'value': 'close'}, {'id': '203', 'type': 'argument_list', 'children': []}; {'id': '204', 'type': 'expression_statement', 'children': ['205']}, {'id': '205', 'type': 'call', 'children': ['206', '209']}; {'id': '206', 'type': 'attribute', 'children': ['207', '208']}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'logging'}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'debug'}, {'id': '209', 'type': 'argument_list', 'children': ['210']}; {'id': '210', 'type': 'call', 'children': ['211', '214']}, {'id': '211', 'type': 'attribute', 'children': ['212', '213']}; {'id': '212', 'type': 'string', 'children': [], 'value': '"File `{0}` sorted to `{1}`."'}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '214', 'type': 'argument_list', 'children': ['215', '216']}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'outfile'}; {'id': '216', 'type': 'attribute', 'children': ['217', '218']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'thread'} | def sort_layout(thread, listfile, column=0):
from jcvi.formats.base import DictFile
outfile = listfile.rsplit(".", 1)[0] + ".sorted.list"
threadorder = thread.order
fw = open(outfile, "w")
lt = DictFile(listfile, keypos=column, valuepos=None)
threaded = []
imported = set()
for t in thread:
accn = t.accn
if accn not in lt:
continue
imported.add(accn)
atoms = lt[accn]
threaded.append(atoms)
assert len(threaded) == len(imported)
total = sum(1 for x in open(listfile))
logging.debug("Total: {0}, currently threaded: {1}".format(total, len(threaded)))
fp = open(listfile)
for row in fp:
atoms = row.split()
accn = atoms[0]
if accn in imported:
continue
insert_into_threaded(atoms, threaded, threadorder)
for atoms in threaded:
print("\t".join(atoms), file=fw)
fw.close()
logging.debug("File `{0}` sorted to `{1}`.".format(outfile, thread.filename)) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'fromgroups'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '5', 'type': 'block', 'children': ['6', '13', '22', '33', '53', '59', '67', '78', '85', '102']}; {'id': '6', 'type': 'import_from_statement', 'children': ['7', '11']}, {'id': '7', 'type': 'dotted_name', 'children': ['8', '9', '10']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'jcvi'}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'formats'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'bed'}, {'id': '11', 'type': 'dotted_name', 'children': ['12']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'Bed'}, {'id': '13', 'type': 'expression_statement', 'children': ['14']}; {'id': '14', 'type': 'assignment', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '16', 'type': 'call', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'OptionParser'}; {'id': '18', 'type': 'argument_list', 'children': ['19']}, {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'fromgroups'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': '__doc__'}; {'id': '22', 'type': 'expression_statement', 'children': ['23']}, {'id': '23', 'type': 'assignment', 'children': ['24', '27']}; {'id': '24', 'type': 'pattern_list', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'opts'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '27', 'type': 'call', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'parse_args'}, {'id': '31', 'type': 'argument_list', 'children': ['32']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '33', 'type': 'if_statement', 'children': ['34', '40']}; {'id': '34', 'type': 'comparison_operator', 'children': ['35', '39'], 'value': '<'}, {'id': '35', 'type': 'call', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '37', 'type': 'argument_list', 'children': ['38']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '39', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '40', 'type': 'block', 'children': ['41']}, {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'call', 'children': ['43', '46']}, {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'sys'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'exit'}; {'id': '46', 'type': 'argument_list', 'children': ['47']}, {'id': '47', 'type': 'not_operator', 'children': ['48']}; {'id': '48', 'type': 'call', 'children': ['49', '52']}, {'id': '49', 'type': 'attribute', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'print_help'}; {'id': '52', 'type': 'argument_list', 'children': []}, {'id': '53', 'type': 'expression_statement', 'children': ['54']}; {'id': '54', 'type': 'assignment', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'groupsfile'}; {'id': '56', 'type': 'subscript', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '58', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '59', 'type': 'expression_statement', 'children': ['60']}; {'id': '60', 'type': 'assignment', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'bedfiles'}; {'id': '62', 'type': 'subscript', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '64', 'type': 'slice', 'children': ['65', '66']}, {'id': '65', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '66', 'type': 'colon', 'children': []}, {'id': '67', 'type': 'expression_statement', 'children': ['68']}; {'id': '68', 'type': 'assignment', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'beds'}; {'id': '70', 'type': 'list_comprehension', 'children': ['71', '75']}, {'id': '71', 'type': 'call', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'Bed'}, {'id': '73', 'type': 'argument_list', 'children': ['74']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '75', 'type': 'for_in_clause', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'bedfiles'}; {'id': '78', 'type': 'expression_statement', 'children': ['79']}, {'id': '79', 'type': 'assignment', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'fp'}, {'id': '81', 'type': 'call', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'open'}, {'id': '83', 'type': 'argument_list', 'children': ['84']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'groupsfile'}, {'id': '85', 'type': 'expression_statement', 'children': ['86']}; {'id': '86', 'type': 'assignment', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'groups'}; {'id': '88', 'type': 'list_comprehension', 'children': ['89', '99']}, {'id': '89', 'type': 'call', 'children': ['90', '97']}; {'id': '90', 'type': 'attribute', 'children': ['91', '96']}, {'id': '91', 'type': 'call', 'children': ['92', '95']}; {'id': '92', 'type': 'attribute', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'row'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'strip'}, {'id': '95', 'type': 'argument_list', 'children': []}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'split'}, {'id': '97', 'type': 'argument_list', 'children': ['98']}; {'id': '98', 'type': 'string', 'children': [], 'value': '","'}, {'id': '99', 'type': 'for_in_clause', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'row'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'fp'}; {'id': '102', 'type': 'for_statement', 'children': ['103', '106', '113']}, {'id': '103', 'type': 'pattern_list', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'b1'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'b2'}; {'id': '106', 'type': 'call', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'product'}; {'id': '108', 'type': 'argument_list', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'beds'}; {'id': '110', 'type': 'keyword_argument', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'repeat'}; {'id': '112', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '113', 'type': 'block', 'children': ['114']}; {'id': '114', 'type': 'expression_statement', 'children': ['115']}, {'id': '115', 'type': 'call', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'extract_pairs'}, {'id': '117', 'type': 'argument_list', 'children': ['118', '119', '120']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'b1'}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'b2'} | def fromgroups(args):
from jcvi.formats.bed import Bed
p = OptionParser(fromgroups.__doc__)
opts, args = p.parse_args(args)
if len(args) < 2:
sys.exit(not p.print_help())
groupsfile = args[0]
bedfiles = args[1:]
beds = [Bed(x) for x in bedfiles]
fp = open(groupsfile)
groups = [row.strip().split(",") for row in fp]
for b1, b2 in product(beds, repeat=2):
extract_pairs(b1, b2, groups) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'merge_paths'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'paths'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'weights'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9', '19', '26']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'G'}; {'id': '12', 'type': 'call', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'make_paths'}; {'id': '14', 'type': 'argument_list', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'paths'}; {'id': '16', 'type': 'keyword_argument', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'weights'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'weights'}, {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'G'}; {'id': '22', 'type': 'call', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'reduce_paths'}; {'id': '24', 'type': 'argument_list', 'children': ['25']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'G'}; {'id': '26', 'type': 'return_statement', 'children': ['27']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'G'} | def merge_paths(paths, weights=None):
G = make_paths(paths, weights=weights)
G = reduce_paths(G)
return G |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'build'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '5', 'type': 'block', 'children': ['6', '13', '20', '27', '36', '52', '63', '83', '90', '106', '115', '123', '132', '138', '147', '153', '163', '168', '174']}; {'id': '6', 'type': 'import_from_statement', 'children': ['7', '11']}, {'id': '7', 'type': 'dotted_name', 'children': ['8', '9', '10']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'jcvi'}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'apps'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'cdhit'}, {'id': '11', 'type': 'dotted_name', 'children': ['12']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'deduplicate'}, {'id': '13', 'type': 'import_from_statement', 'children': ['14', '18']}; {'id': '14', 'type': 'dotted_name', 'children': ['15', '16', '17']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'jcvi'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'apps'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'vecscreen'}; {'id': '18', 'type': 'dotted_name', 'children': ['19']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'mask'}; {'id': '20', 'type': 'import_from_statement', 'children': ['21', '25']}, {'id': '21', 'type': 'dotted_name', 'children': ['22', '23', '24']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'jcvi'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'formats'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'fasta'}, {'id': '25', 'type': 'dotted_name', 'children': ['26']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'assignment', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '30', 'type': 'call', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'OptionParser'}; {'id': '32', 'type': 'argument_list', 'children': ['33']}, {'id': '33', 'type': 'attribute', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'build'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': '__doc__'}; {'id': '36', 'type': 'expression_statement', 'children': ['37']}, {'id': '37', 'type': 'call', 'children': ['38', '41']}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'add_option'}, {'id': '41', 'type': 'argument_list', 'children': ['42', '43', '46', '49']}; {'id': '42', 'type': 'string', 'children': [], 'value': '"--nodedup"'}, {'id': '43', 'type': 'keyword_argument', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'default'}, {'id': '45', 'type': 'False', 'children': []}; {'id': '46', 'type': 'keyword_argument', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'action'}; {'id': '48', 'type': 'string', 'children': [], 'value': '"store_true"'}, {'id': '49', 'type': 'keyword_argument', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'help'}, {'id': '51', 'type': 'string', 'children': [], 'value': '"Do not deduplicate [default: deduplicate]"'}; {'id': '52', 'type': 'expression_statement', 'children': ['53']}, {'id': '53', 'type': 'assignment', 'children': ['54', '57']}; {'id': '54', 'type': 'pattern_list', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'opts'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '57', 'type': 'call', 'children': ['58', '61']}; {'id': '58', 'type': 'attribute', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'parse_args'}, {'id': '61', 'type': 'argument_list', 'children': ['62']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '63', 'type': 'if_statement', 'children': ['64', '70']}; {'id': '64', 'type': 'comparison_operator', 'children': ['65', '69'], 'value': '!='}, {'id': '65', 'type': 'call', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '67', 'type': 'argument_list', 'children': ['68']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '69', 'type': 'integer', 'children': [], 'value': '3'}; {'id': '70', 'type': 'block', 'children': ['71']}, {'id': '71', 'type': 'expression_statement', 'children': ['72']}; {'id': '72', 'type': 'call', 'children': ['73', '76']}, {'id': '73', 'type': 'attribute', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'sys'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'exit'}; {'id': '76', 'type': 'argument_list', 'children': ['77']}, {'id': '77', 'type': 'not_operator', 'children': ['78']}; {'id': '78', 'type': 'call', 'children': ['79', '82']}, {'id': '79', 'type': 'attribute', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'print_help'}; {'id': '82', 'type': 'argument_list', 'children': []}, {'id': '83', 'type': 'expression_statement', 'children': ['84']}; {'id': '84', 'type': 'assignment', 'children': ['85', '89']}, {'id': '85', 'type': 'pattern_list', 'children': ['86', '87', '88']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'fastafile'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'bacteria'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'pf'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '90', 'type': 'expression_statement', 'children': ['91']}, {'id': '91', 'type': 'assignment', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'dd'}, {'id': '93', 'type': 'conditional_expression', 'children': ['94', '100', '101', '105'], 'value': 'if'}; {'id': '94', 'type': 'call', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'deduplicate'}; {'id': '96', 'type': 'argument_list', 'children': ['97']}, {'id': '97', 'type': 'list', 'children': ['98', '99'], 'value': '[fastafile, "--pctid=100"]'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'fastafile'}, {'id': '99', 'type': 'string', 'children': [], 'value': '"--pctid=100"'}; {'id': '100', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '101', 'type': 'not_operator', 'children': ['102']}; {'id': '102', 'type': 'attribute', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'opts'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'nodedup'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'fastafile'}; {'id': '106', 'type': 'expression_statement', 'children': ['107']}, {'id': '107', 'type': 'assignment', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'screenfasta'}, {'id': '109', 'type': 'call', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'screen'}, {'id': '111', 'type': 'argument_list', 'children': ['112']}; {'id': '112', 'type': 'list', 'children': ['113', '114'], 'value': '[dd, bacteria]'}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'dd'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'bacteria'}, {'id': '115', 'type': 'expression_statement', 'children': ['116']}; {'id': '116', 'type': 'assignment', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'tidyfasta'}; {'id': '118', 'type': 'call', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'mask'}; {'id': '120', 'type': 'argument_list', 'children': ['121']}, {'id': '121', 'type': 'list', 'children': ['122'], 'value': '[screenfasta]'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'screenfasta'}, {'id': '123', 'type': 'expression_statement', 'children': ['124']}; {'id': '124', 'type': 'assignment', 'children': ['125', '126']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'sortedfasta'}; {'id': '126', 'type': 'call', 'children': ['127', '128']}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '128', 'type': 'argument_list', 'children': ['129']}, {'id': '129', 'type': 'list', 'children': ['130', '131'], 'value': '[tidyfasta, "--sizes"]'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'tidyfasta'}, {'id': '131', 'type': 'string', 'children': [], 'value': '"--sizes"'}; {'id': '132', 'type': 'expression_statement', 'children': ['133']}, {'id': '133', 'type': 'assignment', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'scaffoldfasta'}, {'id': '135', 'type': 'binary_operator', 'children': ['136', '137'], 'value': '+'}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'pf'}, {'id': '137', 'type': 'string', 'children': [], 'value': '".assembly.fasta"'}; {'id': '138', 'type': 'expression_statement', 'children': ['139']}, {'id': '139', 'type': 'call', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '141', 'type': 'argument_list', 'children': ['142']}; {'id': '142', 'type': 'list', 'children': ['143', '144', '145', '146'], 'value': '[sortedfasta, scaffoldfasta, "--prefix=scaffold_", "--sequential"]'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'sortedfasta'}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'scaffoldfasta'}, {'id': '145', 'type': 'string', 'children': [], 'value': '"--prefix=scaffold_"'}; {'id': '146', 'type': 'string', 'children': [], 'value': '"--sequential"'}, {'id': '147', 'type': 'expression_statement', 'children': ['148']}; {'id': '148', 'type': 'assignment', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'gapsplitfasta'}; {'id': '150', 'type': 'binary_operator', 'children': ['151', '152'], 'value': '+'}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'pf'}; {'id': '152', 'type': 'string', 'children': [], 'value': '".gapSplit.fasta"'}, {'id': '153', 'type': 'expression_statement', 'children': ['154']}; {'id': '154', 'type': 'assignment', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'cmd'}; {'id': '156', 'type': 'call', 'children': ['157', '160']}, {'id': '157', 'type': 'attribute', 'children': ['158', '159']}; {'id': '158', 'type': 'string', 'children': [], 'value': '"gapSplit -minGap=10 {0} {1}"'}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '160', 'type': 'argument_list', 'children': ['161', '162']}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'scaffoldfasta'}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'gapsplitfasta'}, {'id': '163', 'type': 'expression_statement', 'children': ['164']}; {'id': '164', 'type': 'call', 'children': ['165', '166']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'sh'}; {'id': '166', 'type': 'argument_list', 'children': ['167']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'cmd'}; {'id': '168', 'type': 'expression_statement', 'children': ['169']}, {'id': '169', 'type': 'assignment', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'contigsfasta'}, {'id': '171', 'type': 'binary_operator', 'children': ['172', '173'], 'value': '+'}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'pf'}, {'id': '173', 'type': 'string', 'children': [], 'value': '".contigs.fasta"'}; {'id': '174', 'type': 'expression_statement', 'children': ['175']}, {'id': '175', 'type': 'call', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '177', 'type': 'argument_list', 'children': ['178']}; {'id': '178', 'type': 'list', 'children': ['179', '180', '181', '182'], 'value': '[gapsplitfasta, contigsfasta, "--prefix=contig_", "--sequential"]'}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'gapsplitfasta'}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'contigsfasta'}, {'id': '181', 'type': 'string', 'children': [], 'value': '"--prefix=contig_"'} | def build(args):
from jcvi.apps.cdhit import deduplicate
from jcvi.apps.vecscreen import mask
from jcvi.formats.fasta import sort
p = OptionParser(build.__doc__)
p.add_option("--nodedup", default=False, action="store_true",
help="Do not deduplicate [default: deduplicate]")
opts, args = p.parse_args(args)
if len(args) != 3:
sys.exit(not p.print_help())
fastafile, bacteria, pf = args
dd = deduplicate([fastafile, "--pctid=100"]) \
if not opts.nodedup else fastafile
screenfasta = screen([dd, bacteria])
tidyfasta = mask([screenfasta])
sortedfasta = sort([tidyfasta, "--sizes"])
scaffoldfasta = pf + ".assembly.fasta"
format([sortedfasta, scaffoldfasta, "--prefix=scaffold_", "--sequential"])
gapsplitfasta = pf + ".gapSplit.fasta"
cmd = "gapSplit -minGap=10 {0} {1}".format(scaffoldfasta, gapsplitfasta)
sh(cmd)
contigsfasta = pf + ".contigs.fasta"
format([gapsplitfasta, contigsfasta, "--prefix=contig_", "--sequential"]) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '5', 'type': 'block', 'children': ['6', '11']}; {'id': '6', 'type': 'import_statement', 'children': ['7']}, {'id': '7', 'type': 'dotted_name', 'children': ['8', '9', '10']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'jcvi'}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'formats'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'blast'}, {'id': '11', 'type': 'return_statement', 'children': ['12']}; {'id': '12', 'type': 'call', 'children': ['13', '20']}, {'id': '13', 'type': 'attribute', 'children': ['14', '19']}; {'id': '14', 'type': 'attribute', 'children': ['15', '18']}, {'id': '15', 'type': 'attribute', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'jcvi'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'formats'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'blast'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '20', 'type': 'argument_list', 'children': ['21']}, {'id': '21', 'type': 'binary_operator', 'children': ['22', '23'], 'value': '+'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '23', 'type': 'list', 'children': ['24'], 'value': '["--coords"]'} | def sort(args):
import jcvi.formats.blast
return jcvi.formats.blast.sort(args + ["--coords"]) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'coverage'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '5', 'type': 'block', 'children': ['6', '15', '34', '50', '56', '67', '87', '93', '99', '127', '139', '148', '158', '215', '221', '236', '243', '253', '283']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '9', 'type': 'call', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'OptionParser'}, {'id': '11', 'type': 'argument_list', 'children': ['12']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'coverage'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': '__doc__'}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'call', 'children': ['17', '20']}, {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'add_option'}; {'id': '20', 'type': 'argument_list', 'children': ['21', '22', '25', '31']}, {'id': '21', 'type': 'string', 'children': [], 'value': '"--format"'}; {'id': '22', 'type': 'keyword_argument', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'default'}; {'id': '24', 'type': 'string', 'children': [], 'value': '"bigwig"'}, {'id': '25', 'type': 'keyword_argument', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'choices'}, {'id': '27', 'type': 'tuple', 'children': ['28', '29', '30']}; {'id': '28', 'type': 'string', 'children': [], 'value': '"bedgraph"'}, {'id': '29', 'type': 'string', 'children': [], 'value': '"bigwig"'}; {'id': '30', 'type': 'string', 'children': [], 'value': '"coverage"'}, {'id': '31', 'type': 'keyword_argument', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'help'}, {'id': '33', 'type': 'string', 'children': [], 'value': '"Output format"'}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}, {'id': '35', 'type': 'call', 'children': ['36', '39']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'add_option'}, {'id': '39', 'type': 'argument_list', 'children': ['40', '41', '44', '47']}; {'id': '40', 'type': 'string', 'children': [], 'value': '"--nosort"'}, {'id': '41', 'type': 'keyword_argument', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'default'}, {'id': '43', 'type': 'False', 'children': []}; {'id': '44', 'type': 'keyword_argument', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'action'}; {'id': '46', 'type': 'string', 'children': [], 'value': '"store_true"'}, {'id': '47', 'type': 'keyword_argument', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'help'}, {'id': '49', 'type': 'string', 'children': [], 'value': '"Do not sort BAM"'}; {'id': '50', 'type': 'expression_statement', 'children': ['51']}, {'id': '51', 'type': 'call', 'children': ['52', '55']}; {'id': '52', 'type': 'attribute', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'set_outfile'}, {'id': '55', 'type': 'argument_list', 'children': []}; {'id': '56', 'type': 'expression_statement', 'children': ['57']}, {'id': '57', 'type': 'assignment', 'children': ['58', '61']}; {'id': '58', 'type': 'pattern_list', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'opts'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '61', 'type': 'call', 'children': ['62', '65']}; {'id': '62', 'type': 'attribute', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'parse_args'}, {'id': '65', 'type': 'argument_list', 'children': ['66']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '67', 'type': 'if_statement', 'children': ['68', '74']}; {'id': '68', 'type': 'comparison_operator', 'children': ['69', '73'], 'value': '!='}, {'id': '69', 'type': 'call', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '71', 'type': 'argument_list', 'children': ['72']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '73', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '74', 'type': 'block', 'children': ['75']}, {'id': '75', 'type': 'expression_statement', 'children': ['76']}; {'id': '76', 'type': 'call', 'children': ['77', '80']}, {'id': '77', 'type': 'attribute', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'sys'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'exit'}; {'id': '80', 'type': 'argument_list', 'children': ['81']}, {'id': '81', 'type': 'not_operator', 'children': ['82']}; {'id': '82', 'type': 'call', 'children': ['83', '86']}, {'id': '83', 'type': 'attribute', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'print_help'}; {'id': '86', 'type': 'argument_list', 'children': []}, {'id': '87', 'type': 'expression_statement', 'children': ['88']}; {'id': '88', 'type': 'assignment', 'children': ['89', '92']}, {'id': '89', 'type': 'pattern_list', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'fastafile'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'bamfile'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '93', 'type': 'expression_statement', 'children': ['94']}; {'id': '94', 'type': 'assignment', 'children': ['95', '96']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '96', 'type': 'attribute', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'opts'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '99', 'type': 'if_statement', 'children': ['100', '103', '111']}; {'id': '100', 'type': 'attribute', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'opts'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'nosort'}, {'id': '103', 'type': 'block', 'children': ['104']}; {'id': '104', 'type': 'expression_statement', 'children': ['105']}, {'id': '105', 'type': 'call', 'children': ['106', '109']}; {'id': '106', 'type': 'attribute', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'logging'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'debug'}, {'id': '109', 'type': 'argument_list', 'children': ['110']}; {'id': '110', 'type': 'string', 'children': [], 'value': '"BAM sorting skipped"'}, {'id': '111', 'type': 'else_clause', 'children': ['112']}; {'id': '112', 'type': 'block', 'children': ['113']}, {'id': '113', 'type': 'expression_statement', 'children': ['114']}; {'id': '114', 'type': 'assignment', 'children': ['115', '116']}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'bamfile'}; {'id': '116', 'type': 'call', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '118', 'type': 'argument_list', 'children': ['119']}, {'id': '119', 'type': 'list', 'children': ['120', '121'], 'value': '[bamfile, "--fasta={0}".format(fastafile)]'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'bamfile'}, {'id': '121', 'type': 'call', 'children': ['122', '125']}; {'id': '122', 'type': 'attribute', 'children': ['123', '124']}, {'id': '123', 'type': 'string', 'children': [], 'value': '"--fasta={0}"'}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '125', 'type': 'argument_list', 'children': ['126']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'fastafile'}, {'id': '127', 'type': 'expression_statement', 'children': ['128']}; {'id': '128', 'type': 'assignment', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'pf'}; {'id': '130', 'type': 'subscript', 'children': ['131', '138']}, {'id': '131', 'type': 'call', 'children': ['132', '135']}; {'id': '132', 'type': 'attribute', 'children': ['133', '134']}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'bamfile'}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'rsplit'}, {'id': '135', 'type': 'argument_list', 'children': ['136', '137']}; {'id': '136', 'type': 'string', 'children': [], 'value': '"."'}, {'id': '137', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '138', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '139', 'type': 'expression_statement', 'children': ['140']}; {'id': '140', 'type': 'assignment', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'sizesfile'}; {'id': '142', 'type': 'attribute', 'children': ['143', '147']}, {'id': '143', 'type': 'call', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'Sizes'}, {'id': '145', 'type': 'argument_list', 'children': ['146']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'fastafile'}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'filename'}; {'id': '148', 'type': 'expression_statement', 'children': ['149']}, {'id': '149', 'type': 'assignment', 'children': ['150', '151']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'cmd'}, {'id': '151', 'type': 'call', 'children': ['152', '155']}; {'id': '152', 'type': 'attribute', 'children': ['153', '154']}, {'id': '153', 'type': 'string', 'children': [], 'value': '"genomeCoverageBed -ibam {0} -g {1}"'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '155', 'type': 'argument_list', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'bamfile'}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'sizesfile'}; {'id': '158', 'type': 'if_statement', 'children': ['159', '164']}, {'id': '159', 'type': 'comparison_operator', 'children': ['160', '161'], 'value': 'in'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '161', 'type': 'tuple', 'children': ['162', '163']}; {'id': '162', 'type': 'string', 'children': [], 'value': '"bedgraph"'}, {'id': '163', 'type': 'string', 'children': [], 'value': '"bigwig"'}; {'id': '164', 'type': 'block', 'children': ['165', '169', '175', '183', '190', '196', '208', '213']}, {'id': '165', 'type': 'expression_statement', 'children': ['166']}; {'id': '166', 'type': 'augmented_assignment', 'children': ['167', '168'], 'value': '+='}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'cmd'}; {'id': '168', 'type': 'string', 'children': [], 'value': '" -bg"'}, {'id': '169', 'type': 'expression_statement', 'children': ['170']}; {'id': '170', 'type': 'assignment', 'children': ['171', '172']}, {'id': '171', 'type': 'identifier', 'children': [], 'value': 'bedgraphfile'}; {'id': '172', 'type': 'binary_operator', 'children': ['173', '174'], 'value': '+'}, {'id': '173', 'type': 'identifier', 'children': [], 'value': 'pf'}; {'id': '174', 'type': 'string', 'children': [], 'value': '".bedgraph"'}, {'id': '175', 'type': 'expression_statement', 'children': ['176']}; {'id': '176', 'type': 'call', 'children': ['177', '178']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'sh'}; {'id': '178', 'type': 'argument_list', 'children': ['179', '180']}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'cmd'}; {'id': '180', 'type': 'keyword_argument', 'children': ['181', '182']}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'outfile'}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'bedgraphfile'}, {'id': '183', 'type': 'if_statement', 'children': ['184', '187']}; {'id': '184', 'type': 'comparison_operator', 'children': ['185', '186'], 'value': '=='}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '186', 'type': 'string', 'children': [], 'value': '"bedgraph"'}, {'id': '187', 'type': 'block', 'children': ['188']}; {'id': '188', 'type': 'return_statement', 'children': ['189']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'bedgraphfile'}; {'id': '190', 'type': 'expression_statement', 'children': ['191']}, {'id': '191', 'type': 'assignment', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'bigwigfile'}, {'id': '193', 'type': 'binary_operator', 'children': ['194', '195'], 'value': '+'}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'pf'}, {'id': '195', 'type': 'string', 'children': [], 'value': '".bigwig"'}; {'id': '196', 'type': 'expression_statement', 'children': ['197']}, {'id': '197', 'type': 'assignment', 'children': ['198', '199']}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'cmd'}, {'id': '199', 'type': 'call', 'children': ['200', '204']}; {'id': '200', 'type': 'attribute', 'children': ['201', '202', '203']}, {'id': '201', 'type': 'string', 'children': [], 'value': '"bedGraphToBigWig {0} {1} {2}"'}; {'id': '202', 'type': 'line_continuation', 'children': [], 'value': '\\'}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '204', 'type': 'argument_list', 'children': ['205', '206', '207']}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'bedgraphfile'}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'sizesfile'}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'bigwigfile'}; {'id': '208', 'type': 'expression_statement', 'children': ['209']}, {'id': '209', 'type': 'call', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'sh'}, {'id': '211', 'type': 'argument_list', 'children': ['212']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'cmd'}, {'id': '213', 'type': 'return_statement', 'children': ['214']}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'bigwigfile'}, {'id': '215', 'type': 'expression_statement', 'children': ['216']}; {'id': '216', 'type': 'assignment', 'children': ['217', '218']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'coveragefile'}; {'id': '218', 'type': 'binary_operator', 'children': ['219', '220'], 'value': '+'}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'pf'}; {'id': '220', 'type': 'string', 'children': [], 'value': '".coverage"'}, {'id': '221', 'type': 'if_statement', 'children': ['222', '227']}; {'id': '222', 'type': 'call', 'children': ['223', '224']}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'need_update'}; {'id': '224', 'type': 'argument_list', 'children': ['225', '226']}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'fastafile'}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'coveragefile'}, {'id': '227', 'type': 'block', 'children': ['228']}; {'id': '228', 'type': 'expression_statement', 'children': ['229']}, {'id': '229', 'type': 'call', 'children': ['230', '231']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'sh'}, {'id': '231', 'type': 'argument_list', 'children': ['232', '233']}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'cmd'}, {'id': '233', 'type': 'keyword_argument', 'children': ['234', '235']}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'outfile'}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'coveragefile'}; {'id': '236', 'type': 'expression_statement', 'children': ['237']}, {'id': '237', 'type': 'assignment', 'children': ['238', '239']}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'gcf'}, {'id': '239', 'type': 'call', 'children': ['240', '241']}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'GenomeCoverageFile'}, {'id': '241', 'type': 'argument_list', 'children': ['242']}; {'id': '242', 'type': 'identifier', 'children': [], 'value': 'coveragefile'}, {'id': '243', 'type': 'expression_statement', 'children': ['244']}; {'id': '244', 'type': 'assignment', 'children': ['245', '246']}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'fw'}; {'id': '246', 'type': 'call', 'children': ['247', '248']}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'must_open'}; {'id': '248', 'type': 'argument_list', 'children': ['249', '252']}, {'id': '249', 'type': 'attribute', 'children': ['250', '251']}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'opts'}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'outfile'}; {'id': '252', 'type': 'string', 'children': [], 'value': '"w"'}, {'id': '253', 'type': 'for_statement', 'children': ['254', '257', '262']}; {'id': '254', 'type': 'pattern_list', 'children': ['255', '256']}, {'id': '255', 'type': 'identifier', 'children': [], 'value': 'seqid'}; {'id': '256', 'type': 'identifier', 'children': [], 'value': 'cov'}, {'id': '257', 'type': 'call', 'children': ['258', '261']}; {'id': '258', 'type': 'attribute', 'children': ['259', '260']}, {'id': '259', 'type': 'identifier', 'children': [], 'value': 'gcf'}; {'id': '260', 'type': 'identifier', 'children': [], 'value': 'iter_coverage_seqid'}, {'id': '261', 'type': 'argument_list', 'children': []}; {'id': '262', 'type': 'block', 'children': ['263']}, {'id': '263', 'type': 'expression_statement', 'children': ['264']}; {'id': '264', 'type': 'call', 'children': ['265', '266']}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'print'}; {'id': '266', 'type': 'argument_list', 'children': ['267', '280']}, {'id': '267', 'type': 'call', 'children': ['268', '271']}; {'id': '268', 'type': 'attribute', 'children': ['269', '270']}, {'id': '269', 'type': 'string', 'children': [], 'value': '"\\t"'}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '271', 'type': 'argument_list', 'children': ['272']}; {'id': '272', 'type': 'tuple', 'children': ['273', '274']}, {'id': '273', 'type': 'identifier', 'children': [], 'value': 'seqid'}; {'id': '274', 'type': 'call', 'children': ['275', '278']}, {'id': '275', 'type': 'attribute', 'children': ['276', '277']}; {'id': '276', 'type': 'string', 'children': [], 'value': '"{0:.1f}"'}, {'id': '277', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '278', 'type': 'argument_list', 'children': ['279']}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'cov'}; {'id': '280', 'type': 'keyword_argument', 'children': ['281', '282']}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'file'}; {'id': '282', 'type': 'identifier', 'children': [], 'value': 'fw'}, {'id': '283', 'type': 'expression_statement', 'children': ['284']}; {'id': '284', 'type': 'call', 'children': ['285', '288']}, {'id': '285', 'type': 'attribute', 'children': ['286', '287']}; {'id': '286', 'type': 'identifier', 'children': [], 'value': 'fw'}, {'id': '287', 'type': 'identifier', 'children': [], 'value': 'close'} | def coverage(args):
p = OptionParser(coverage.__doc__)
p.add_option("--format", default="bigwig",
choices=("bedgraph", "bigwig", "coverage"),
help="Output format")
p.add_option("--nosort", default=False, action="store_true",
help="Do not sort BAM")
p.set_outfile()
opts, args = p.parse_args(args)
if len(args) != 2:
sys.exit(not p.print_help())
fastafile, bamfile = args
format = opts.format
if opts.nosort:
logging.debug("BAM sorting skipped")
else:
bamfile = index([bamfile, "--fasta={0}".format(fastafile)])
pf = bamfile.rsplit(".", 2)[0]
sizesfile = Sizes(fastafile).filename
cmd = "genomeCoverageBed -ibam {0} -g {1}".format(bamfile, sizesfile)
if format in ("bedgraph", "bigwig"):
cmd += " -bg"
bedgraphfile = pf + ".bedgraph"
sh(cmd, outfile=bedgraphfile)
if format == "bedgraph":
return bedgraphfile
bigwigfile = pf + ".bigwig"
cmd = "bedGraphToBigWig {0} {1} {2}".\
format(bedgraphfile, sizesfile, bigwigfile)
sh(cmd)
return bigwigfile
coveragefile = pf + ".coverage"
if need_update(fastafile, coveragefile):
sh(cmd, outfile=coveragefile)
gcf = GenomeCoverageFile(coveragefile)
fw = must_open(opts.outfile, "w")
for seqid, cov in gcf.iter_coverage_seqid():
print("\t".join((seqid, "{0:.1f}".format(cov))), file=fw)
fw.close() |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': '_number_finder'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 's'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'regex'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'numconv'}, {'id': '7', 'type': 'block', 'children': ['8', '17', '30', '37', '64']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}, {'id': '9', 'type': 'assignment', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 's'}, {'id': '11', 'type': 'call', 'children': ['12', '15']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'regex'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'split'}, {'id': '15', 'type': 'argument_list', 'children': ['16']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 's'}, {'id': '17', 'type': 'if_statement', 'children': ['18', '24']}; {'id': '18', 'type': 'comparison_operator', 'children': ['19', '23'], 'value': '=='}, {'id': '19', 'type': 'call', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '21', 'type': 'argument_list', 'children': ['22']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 's'}, {'id': '23', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '24', 'type': 'block', 'children': ['25']}, {'id': '25', 'type': 'return_statement', 'children': ['26']}; {'id': '26', 'type': 'call', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'tuple'}; {'id': '28', 'type': 'argument_list', 'children': ['29']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}, {'id': '31', 'type': 'assignment', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 's'}, {'id': '33', 'type': 'call', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'remove_empty'}, {'id': '35', 'type': 'argument_list', 'children': ['36']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 's'}, {'id': '37', 'type': 'for_statement', 'children': ['38', '39', '46']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '39', 'type': 'call', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'range'}, {'id': '41', 'type': 'argument_list', 'children': ['42']}; {'id': '42', 'type': 'call', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '44', 'type': 'argument_list', 'children': ['45']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 's'}; {'id': '46', 'type': 'block', 'children': ['47']}, {'id': '47', 'type': 'try_statement', 'children': ['48', '60']}; {'id': '48', 'type': 'block', 'children': ['49']}, {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'assignment', 'children': ['51', '54']}, {'id': '51', 'type': 'subscript', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 's'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '54', 'type': 'call', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'numconv'}; {'id': '56', 'type': 'argument_list', 'children': ['57']}, {'id': '57', 'type': 'subscript', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 's'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '60', 'type': 'except_clause', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '62', 'type': 'block', 'children': ['63']}, {'id': '63', 'type': 'pass_statement', 'children': []}; {'id': '64', 'type': 'if_statement', 'children': ['65', '75', '81']}, {'id': '65', 'type': 'not_operator', 'children': ['66']}; {'id': '66', 'type': 'call', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '68', 'type': 'argument_list', 'children': ['69', '72']}, {'id': '69', 'type': 'subscript', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 's'}, {'id': '71', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '72', 'type': 'attribute', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'six'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'string_types'}, {'id': '75', 'type': 'block', 'children': ['76']}; {'id': '76', 'type': 'return_statement', 'children': ['77']}, {'id': '77', 'type': 'binary_operator', 'children': ['78', '80'], 'value': '+'}; {'id': '78', 'type': 'list', 'children': ['79'], 'value': "['']"}, {'id': '79', 'type': 'string', 'children': [], 'value': "''"}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 's'}, {'id': '81', 'type': 'else_clause', 'children': ['82']}; {'id': '82', 'type': 'block', 'children': ['83']}, {'id': '83', 'type': 'return_statement', 'children': ['84']} | def _number_finder(s, regex, numconv):
s = regex.split(s)
if len(s) == 1:
return tuple(s)
s = remove_empty(s)
for i in range(len(s)):
try:
s[i] = numconv(s[i])
except ValueError:
pass
if not isinstance(s[0], six.string_types):
return [''] + s
else:
return s |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '20']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'index_natsorted'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '11', '14', '17']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'seq'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '7', 'type': 'lambda', 'children': ['8', '10']}; {'id': '8', 'type': 'lambda_parameters', 'children': ['9']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'number_type'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'float'}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'signed'}; {'id': '16', 'type': 'True', 'children': []}, {'id': '17', 'type': 'default_parameter', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'exp'}, {'id': '19', 'type': 'True', 'children': []}; {'id': '20', 'type': 'block', 'children': ['21', '26', '33', '58', '85']}, {'id': '21', 'type': 'import_from_statement', 'children': ['22', '24']}; {'id': '22', 'type': 'dotted_name', 'children': ['23']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'operator'}; {'id': '24', 'type': 'dotted_name', 'children': ['25']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'itemgetter'}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}, {'id': '27', 'type': 'assignment', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'item1'}, {'id': '29', 'type': 'call', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'itemgetter'}, {'id': '31', 'type': 'argument_list', 'children': ['32']}; {'id': '32', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'assignment', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'index_seq_pair'}; {'id': '36', 'type': 'list_comprehension', 'children': ['37', '43']}, {'id': '37', 'type': 'list', 'children': ['38', '39'], 'value': '[x, key(y)]'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '39', 'type': 'call', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '41', 'type': 'argument_list', 'children': ['42']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '43', 'type': 'for_in_clause', 'children': ['44', '47']}; {'id': '44', 'type': 'pattern_list', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'y'}, {'id': '47', 'type': 'call', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'zip'}, {'id': '49', 'type': 'argument_list', 'children': ['50', '57']}; {'id': '50', 'type': 'call', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '52', 'type': 'argument_list', 'children': ['53']}, {'id': '53', 'type': 'call', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '55', 'type': 'argument_list', 'children': ['56']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'seq'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'seq'}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}, {'id': '59', 'type': 'call', 'children': ['60', '63']}; {'id': '60', 'type': 'attribute', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'index_seq_pair'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '63', 'type': 'argument_list', 'children': ['64']}; {'id': '64', 'type': 'keyword_argument', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '66', 'type': 'lambda', 'children': ['67', '69']}, {'id': '67', 'type': 'lambda_parameters', 'children': ['68']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '69', 'type': 'call', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'natsort_key'}, {'id': '71', 'type': 'argument_list', 'children': ['72', '76', '79', '82']}; {'id': '72', 'type': 'call', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'item1'}; {'id': '74', 'type': 'argument_list', 'children': ['75']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '76', 'type': 'keyword_argument', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'number_type'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'number_type'}, {'id': '79', 'type': 'keyword_argument', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'signed'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'signed'}; {'id': '82', 'type': 'keyword_argument', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'exp'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'exp'}, {'id': '85', 'type': 'return_statement', 'children': ['86']}; {'id': '86', 'type': 'list_comprehension', 'children': ['87', '90']}, {'id': '87', 'type': 'subscript', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '89', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '90', 'type': 'for_in_clause', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'x'} | def index_natsorted(seq, key=lambda x: x, number_type=float, signed=True, exp=True):
from operator import itemgetter
item1 = itemgetter(1)
index_seq_pair = [[x, key(y)] for x, y in zip(range(len(seq)), seq)]
index_seq_pair.sort(key=lambda x: natsort_key(item1(x),
number_type=number_type,
signed=signed, exp=exp))
return [x[0] for x in index_seq_pair] |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '5', 'type': 'block', 'children': ['6', '15', '35', '54', '70', '79', '85', '96', '116', '121', '127', '137', '143', '182', '192', '196', '212', '221', '232', '246']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '9', 'type': 'call', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'OptionParser'}, {'id': '11', 'type': 'argument_list', 'children': ['12']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': '__doc__'}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'call', 'children': ['17', '20']}, {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'add_option'}; {'id': '20', 'type': 'argument_list', 'children': ['21', '22', '23', '26', '29', '32']}, {'id': '21', 'type': 'string', 'children': [], 'value': '"-i"'}; {'id': '22', 'type': 'string', 'children': [], 'value': '"--inplace"'}, {'id': '23', 'type': 'keyword_argument', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'dest'}, {'id': '25', 'type': 'string', 'children': [], 'value': '"inplace"'}; {'id': '26', 'type': 'keyword_argument', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'default'}; {'id': '28', 'type': 'False', 'children': []}, {'id': '29', 'type': 'keyword_argument', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'action'}, {'id': '31', 'type': 'string', 'children': [], 'value': '"store_true"'}; {'id': '32', 'type': 'keyword_argument', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'help'}; {'id': '34', 'type': 'string', 'children': [], 'value': '"Sort bed file in place [default: %default]"'}, {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'call', 'children': ['37', '40']}, {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'add_option'}; {'id': '40', 'type': 'argument_list', 'children': ['41', '42', '45', '48', '51']}, {'id': '41', 'type': 'string', 'children': [], 'value': '"-u"'}; {'id': '42', 'type': 'keyword_argument', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'dest'}; {'id': '44', 'type': 'string', 'children': [], 'value': '"unique"'}, {'id': '45', 'type': 'keyword_argument', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'default'}, {'id': '47', 'type': 'False', 'children': []}; {'id': '48', 'type': 'keyword_argument', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'action'}; {'id': '50', 'type': 'string', 'children': [], 'value': '"store_true"'}, {'id': '51', 'type': 'keyword_argument', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'help'}, {'id': '53', 'type': 'string', 'children': [], 'value': '"Uniqify the bed file"'}; {'id': '54', 'type': 'expression_statement', 'children': ['55']}, {'id': '55', 'type': 'call', 'children': ['56', '59']}; {'id': '56', 'type': 'attribute', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'add_option'}, {'id': '59', 'type': 'argument_list', 'children': ['60', '61', '64', '67']}; {'id': '60', 'type': 'string', 'children': [], 'value': '"--accn"'}, {'id': '61', 'type': 'keyword_argument', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'default'}, {'id': '63', 'type': 'False', 'children': []}; {'id': '64', 'type': 'keyword_argument', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'action'}; {'id': '66', 'type': 'string', 'children': [], 'value': '"store_true"'}, {'id': '67', 'type': 'keyword_argument', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'help'}, {'id': '69', 'type': 'string', 'children': [], 'value': '"Sort based on the accessions [default: %default]"'}; {'id': '70', 'type': 'expression_statement', 'children': ['71']}, {'id': '71', 'type': 'call', 'children': ['72', '75']}; {'id': '72', 'type': 'attribute', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'set_outfile'}, {'id': '75', 'type': 'argument_list', 'children': ['76']}; {'id': '76', 'type': 'keyword_argument', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'outfile'}; {'id': '78', 'type': 'None', 'children': []}, {'id': '79', 'type': 'expression_statement', 'children': ['80']}; {'id': '80', 'type': 'call', 'children': ['81', '84']}, {'id': '81', 'type': 'attribute', 'children': ['82', '83']}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'set_tmpdir'}; {'id': '84', 'type': 'argument_list', 'children': []}, {'id': '85', 'type': 'expression_statement', 'children': ['86']}; {'id': '86', 'type': 'assignment', 'children': ['87', '90']}, {'id': '87', 'type': 'pattern_list', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'opts'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '90', 'type': 'call', 'children': ['91', '94']}, {'id': '91', 'type': 'attribute', 'children': ['92', '93']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'parse_args'}; {'id': '94', 'type': 'argument_list', 'children': ['95']}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '96', 'type': 'if_statement', 'children': ['97', '103']}, {'id': '97', 'type': 'comparison_operator', 'children': ['98', '102'], 'value': '!='}; {'id': '98', 'type': 'call', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '100', 'type': 'argument_list', 'children': ['101']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'args'}; {'id': '102', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '103', 'type': 'block', 'children': ['104']}; {'id': '104', 'type': 'expression_statement', 'children': ['105']}, {'id': '105', 'type': 'call', 'children': ['106', '109']}; {'id': '106', 'type': 'attribute', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'sys'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'exit'}, {'id': '109', 'type': 'argument_list', 'children': ['110']}; {'id': '110', 'type': 'not_operator', 'children': ['111']}, {'id': '111', 'type': 'call', 'children': ['112', '115']}; {'id': '112', 'type': 'attribute', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'print_help'}, {'id': '115', 'type': 'argument_list', 'children': []}; {'id': '116', 'type': 'expression_statement', 'children': ['117']}, {'id': '117', 'type': 'assignment', 'children': ['118', '120']}; {'id': '118', 'type': 'pattern_list', 'children': ['119']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'bedfile'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'args'}, {'id': '121', 'type': 'expression_statement', 'children': ['122']}; {'id': '122', 'type': 'assignment', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'inplace'}; {'id': '124', 'type': 'attribute', 'children': ['125', '126']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'opts'}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'inplace'}, {'id': '127', 'type': 'if_statement', 'children': ['128', '134']}; {'id': '128', 'type': 'boolean_operator', 'children': ['129', '131'], 'value': 'and'}, {'id': '129', 'type': 'not_operator', 'children': ['130']}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'inplace'}, {'id': '131', 'type': 'comparison_operator', 'children': ['132', '133'], 'value': 'in'}; {'id': '132', 'type': 'string', 'children': [], 'value': '".sorted."'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'bedfile'}; {'id': '134', 'type': 'block', 'children': ['135']}, {'id': '135', 'type': 'return_statement', 'children': ['136']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'bedfile'}, {'id': '137', 'type': 'expression_statement', 'children': ['138']}; {'id': '138', 'type': 'assignment', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'sortedbed'}; {'id': '140', 'type': 'attribute', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'opts'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'outfile'}, {'id': '143', 'type': 'if_statement', 'children': ['144', '145', '150']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'inplace'}, {'id': '145', 'type': 'block', 'children': ['146']}; {'id': '146', 'type': 'expression_statement', 'children': ['147']}, {'id': '147', 'type': 'assignment', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'sortedbed'}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'bedfile'}; {'id': '150', 'type': 'elif_clause', 'children': ['151', '156']}, {'id': '151', 'type': 'comparison_operator', 'children': ['152', '155'], 'value': 'is'}; {'id': '152', 'type': 'attribute', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'opts'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'outfile'}, {'id': '155', 'type': 'None', 'children': []}; {'id': '156', 'type': 'block', 'children': ['157', '174']}, {'id': '157', 'type': 'expression_statement', 'children': ['158']}; {'id': '158', 'type': 'assignment', 'children': ['159', '162']}, {'id': '159', 'type': 'pattern_list', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'pf'}, {'id': '161', 'type': 'identifier', 'children': [], 'value': 'sf'}; {'id': '162', 'type': 'call', 'children': ['163', '171']}, {'id': '163', 'type': 'attribute', 'children': ['164', '170']}; {'id': '164', 'type': 'call', 'children': ['165', '168']}, {'id': '165', 'type': 'attribute', 'children': ['166', '167']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'op'}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'basename'}; {'id': '168', 'type': 'argument_list', 'children': ['169']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'bedfile'}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'rsplit'}, {'id': '171', 'type': 'argument_list', 'children': ['172', '173']}; {'id': '172', 'type': 'string', 'children': [], 'value': '"."'}, {'id': '173', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '174', 'type': 'expression_statement', 'children': ['175']}, {'id': '175', 'type': 'assignment', 'children': ['176', '177']}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'sortedbed'}, {'id': '177', 'type': 'binary_operator', 'children': ['178', '181'], 'value': '+'}; {'id': '178', 'type': 'binary_operator', 'children': ['179', '180'], 'value': '+'}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'pf'}; {'id': '180', 'type': 'string', 'children': [], 'value': '".sorted."'}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'sf'}; {'id': '182', 'type': 'expression_statement', 'children': ['183']}, {'id': '183', 'type': 'assignment', 'children': ['184', '185']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'sortopt'}, {'id': '185', 'type': 'conditional_expression', 'children': ['186', '187', '191'], 'value': 'if'}; {'id': '186', 'type': 'string', 'children': [], 'value': '"-k1,1 -k2,2n -k3,3n -k4,4"'}, {'id': '187', 'type': 'not_operator', 'children': ['188']}; {'id': '188', 'type': 'attribute', 'children': ['189', '190']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'opts'}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'accn'}, {'id': '191', 'type': 'string', 'children': [], 'value': '"-k4,4 -k1,1 -k2,2n -k3,3n"'}; {'id': '192', 'type': 'expression_statement', 'children': ['193']}, {'id': '193', 'type': 'assignment', 'children': ['194', '195']}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'cmd'}, {'id': '195', 'type': 'string', 'children': [], 'value': '"sort"'}; {'id': '196', 'type': 'if_statement', 'children': ['197', '200']}, {'id': '197', 'type': 'attribute', 'children': ['198', '199']}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'opts'}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'tmpdir'}; {'id': '200', 'type': 'block', 'children': ['201']}, {'id': '201', 'type': 'expression_statement', 'children': ['202']}; {'id': '202', 'type': 'augmented_assignment', 'children': ['203', '204'], 'value': '+='}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'cmd'}; {'id': '204', 'type': 'call', 'children': ['205', '208']}, {'id': '205', 'type': 'attribute', 'children': ['206', '207']}; {'id': '206', 'type': 'string', 'children': [], 'value': '" -T {0}"'}, {'id': '207', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '208', 'type': 'argument_list', 'children': ['209']}, {'id': '209', 'type': 'attribute', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'opts'}, {'id': '211', 'type': 'identifier', 'children': [], 'value': 'tmpdir'}; {'id': '212', 'type': 'if_statement', 'children': ['213', '216']}, {'id': '213', 'type': 'attribute', 'children': ['214', '215']}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'opts'}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'unique'}; {'id': '216', 'type': 'block', 'children': ['217']}, {'id': '217', 'type': 'expression_statement', 'children': ['218']}; {'id': '218', 'type': 'augmented_assignment', 'children': ['219', '220'], 'value': '+='}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'cmd'}; {'id': '220', 'type': 'string', 'children': [], 'value': '" -u"'}, {'id': '221', 'type': 'expression_statement', 'children': ['222']}; {'id': '222', 'type': 'augmented_assignment', 'children': ['223', '224'], 'value': '+='}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'cmd'}; {'id': '224', 'type': 'call', 'children': ['225', '228']}, {'id': '225', 'type': 'attribute', 'children': ['226', '227']}; {'id': '226', 'type': 'string', 'children': [], 'value': '" {0} {1} -o {2}"'}, {'id': '227', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '228', 'type': 'argument_list', 'children': ['229', '230', '231']}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'sortopt'}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'bedfile'}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'sortedbed'}; {'id': '232', 'type': 'if_statement', 'children': ['233', '240']}, {'id': '233', 'type': 'boolean_operator', 'children': ['234', '235'], 'value': 'or'}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'inplace'}, {'id': '235', 'type': 'call', 'children': ['236', '237']}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'need_update'}, {'id': '237', 'type': 'argument_list', 'children': ['238', '239']}; {'id': '238', 'type': 'identifier', 'children': [], 'value': 'bedfile'}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'sortedbed'}; {'id': '240', 'type': 'block', 'children': ['241']}, {'id': '241', 'type': 'expression_statement', 'children': ['242']}; {'id': '242', 'type': 'call', 'children': ['243', '244']}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'sh'}; {'id': '244', 'type': 'argument_list', 'children': ['245']}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'cmd'}; {'id': '246', 'type': 'return_statement', 'children': ['247']}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'sortedbed'} | def sort(args):
p = OptionParser(sort.__doc__)
p.add_option("-i", "--inplace", dest="inplace",
default=False, action="store_true",
help="Sort bed file in place [default: %default]")
p.add_option("-u", dest="unique",
default=False, action="store_true",
help="Uniqify the bed file")
p.add_option("--accn", default=False, action="store_true",
help="Sort based on the accessions [default: %default]")
p.set_outfile(outfile=None)
p.set_tmpdir()
opts, args = p.parse_args(args)
if len(args) != 1:
sys.exit(not p.print_help())
bedfile, = args
inplace = opts.inplace
if not inplace and ".sorted." in bedfile:
return bedfile
sortedbed = opts.outfile
if inplace:
sortedbed = bedfile
elif opts.outfile is None:
pf, sf = op.basename(bedfile).rsplit(".", 1)
sortedbed = pf + ".sorted." + sf
sortopt = "-k1,1 -k2,2n -k3,3n -k4,4" if not opts.accn else \
"-k4,4 -k1,1 -k2,2n -k3,3n"
cmd = "sort"
if opts.tmpdir:
cmd += " -T {0}".format(opts.tmpdir)
if opts.unique:
cmd += " -u"
cmd += " {0} {1} -o {2}".format(sortopt, bedfile, sortedbed)
if inplace or need_update(bedfile, sortedbed):
sh(cmd)
return sortedbed |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'by_image_seq'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'blocks'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'image_seq'}; {'id': '6', 'type': 'block', 'children': ['7']}, {'id': '7', 'type': 'return_statement', 'children': ['8']}; {'id': '8', 'type': 'call', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '10', 'type': 'argument_list', 'children': ['11']}, {'id': '11', 'type': 'call', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'filter'}, {'id': '13', 'type': 'argument_list', 'children': ['14', '26']}; {'id': '14', 'type': 'lambda', 'children': ['15', '17']}, {'id': '15', 'type': 'lambda_parameters', 'children': ['16']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'block'}, {'id': '17', 'type': 'comparison_operator', 'children': ['18', '25'], 'value': '=='}; {'id': '18', 'type': 'attribute', 'children': ['19', '24']}, {'id': '19', 'type': 'attribute', 'children': ['20', '23']}; {'id': '20', 'type': 'subscript', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'blocks'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'block'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'ec_hdr'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'image_seq'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'image_seq'} | def by_image_seq(blocks, image_seq):
return list(filter(lambda block: blocks[block].ec_hdr.image_seq == image_seq, blocks)) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'by_vol_id'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'blocks'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'slist'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9', '13', '76']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'vol_blocks'}; {'id': '12', 'type': 'dictionary', 'children': []}, {'id': '13', 'type': 'for_statement', 'children': ['14', '15', '16']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'blocks'}; {'id': '16', 'type': 'block', 'children': ['17', '34', '57']}, {'id': '17', 'type': 'if_statement', 'children': ['18', '23', '25']}; {'id': '18', 'type': 'boolean_operator', 'children': ['19', '20'], 'value': 'and'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'slist'}; {'id': '20', 'type': 'comparison_operator', 'children': ['21', '22'], 'value': 'not'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'slist'}, {'id': '23', 'type': 'block', 'children': ['24']}; {'id': '24', 'type': 'continue_statement', 'children': []}, {'id': '25', 'type': 'elif_clause', 'children': ['26', '32']}; {'id': '26', 'type': 'not_operator', 'children': ['27']}, {'id': '27', 'type': 'attribute', 'children': ['28', '31']}; {'id': '28', 'type': 'subscript', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'blocks'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'is_valid'}; {'id': '32', 'type': 'block', 'children': ['33']}, {'id': '33', 'type': 'continue_statement', 'children': []}; {'id': '34', 'type': 'if_statement', 'children': ['35', '44']}, {'id': '35', 'type': 'comparison_operator', 'children': ['36', '43'], 'value': 'not'}; {'id': '36', 'type': 'attribute', 'children': ['37', '42']}, {'id': '37', 'type': 'attribute', 'children': ['38', '41']}; {'id': '38', 'type': 'subscript', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'blocks'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'vid_hdr'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'vol_id'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'vol_blocks'}; {'id': '44', 'type': 'block', 'children': ['45']}, {'id': '45', 'type': 'expression_statement', 'children': ['46']}; {'id': '46', 'type': 'assignment', 'children': ['47', '56']}, {'id': '47', 'type': 'subscript', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'vol_blocks'}, {'id': '49', 'type': 'attribute', 'children': ['50', '55']}; {'id': '50', 'type': 'attribute', 'children': ['51', '54']}, {'id': '51', 'type': 'subscript', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'blocks'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'vid_hdr'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'vol_id'}; {'id': '56', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '57', 'type': 'expression_statement', 'children': ['58']}; {'id': '58', 'type': 'call', 'children': ['59', '70']}, {'id': '59', 'type': 'attribute', 'children': ['60', '69']}; {'id': '60', 'type': 'subscript', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'vol_blocks'}; {'id': '62', 'type': 'attribute', 'children': ['63', '68']}, {'id': '63', 'type': 'attribute', 'children': ['64', '67']}; {'id': '64', 'type': 'subscript', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'blocks'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'vid_hdr'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'vol_id'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '70', 'type': 'argument_list', 'children': ['71']}, {'id': '71', 'type': 'attribute', 'children': ['72', '75']}; {'id': '72', 'type': 'subscript', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'blocks'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'peb_num'}; {'id': '76', 'type': 'return_statement', 'children': ['77']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'vol_blocks'} | def by_vol_id(blocks, slist=None):
vol_blocks = {}
for i in blocks:
if slist and i not in slist:
continue
elif not blocks[i].is_valid:
continue
if blocks[i].vid_hdr.vol_id not in vol_blocks:
vol_blocks[blocks[i].vid_hdr.vol_id] = []
vol_blocks[blocks[i].vid_hdr.vol_id].append(blocks[i].peb_num)
return vol_blocks |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'by_type'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'blocks'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'slist'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'block', 'children': ['9', '13', '17', '21', '25', '100']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'layout'}; {'id': '12', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '13', 'type': 'expression_statement', 'children': ['14']}; {'id': '14', 'type': 'assignment', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '16', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'assignment', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'int_vol'}; {'id': '20', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'unknown'}; {'id': '24', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '25', 'type': 'for_statement', 'children': ['26', '27', '28']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'blocks'}; {'id': '28', 'type': 'block', 'children': ['29', '37']}, {'id': '29', 'type': 'if_statement', 'children': ['30', '35']}; {'id': '30', 'type': 'boolean_operator', 'children': ['31', '32'], 'value': 'and'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'slist'}; {'id': '32', 'type': 'comparison_operator', 'children': ['33', '34'], 'value': 'not'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'slist'}, {'id': '35', 'type': 'block', 'children': ['36']}; {'id': '36', 'type': 'continue_statement', 'children': []}, {'id': '37', 'type': 'if_statement', 'children': ['38', '49', '57', '77', '91']}; {'id': '38', 'type': 'boolean_operator', 'children': ['39', '44'], 'value': 'and'}, {'id': '39', 'type': 'attribute', 'children': ['40', '43']}; {'id': '40', 'type': 'subscript', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'blocks'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'is_vtbl'}; {'id': '44', 'type': 'attribute', 'children': ['45', '48']}, {'id': '45', 'type': 'subscript', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'blocks'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'is_valid'}, {'id': '49', 'type': 'block', 'children': ['50']}; {'id': '50', 'type': 'expression_statement', 'children': ['51']}, {'id': '51', 'type': 'call', 'children': ['52', '55']}; {'id': '52', 'type': 'attribute', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'layout'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '55', 'type': 'argument_list', 'children': ['56']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '57', 'type': 'elif_clause', 'children': ['58', '69']}; {'id': '58', 'type': 'boolean_operator', 'children': ['59', '64'], 'value': 'and'}, {'id': '59', 'type': 'attribute', 'children': ['60', '63']}; {'id': '60', 'type': 'subscript', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'blocks'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'is_internal_vol'}; {'id': '64', 'type': 'attribute', 'children': ['65', '68']}, {'id': '65', 'type': 'subscript', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'blocks'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'is_valid'}, {'id': '69', 'type': 'block', 'children': ['70']}; {'id': '70', 'type': 'expression_statement', 'children': ['71']}, {'id': '71', 'type': 'call', 'children': ['72', '75']}; {'id': '72', 'type': 'attribute', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'int_vol'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '75', 'type': 'argument_list', 'children': ['76']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '77', 'type': 'elif_clause', 'children': ['78', '83']}; {'id': '78', 'type': 'attribute', 'children': ['79', '82']}, {'id': '79', 'type': 'subscript', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'blocks'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'is_valid'}, {'id': '83', 'type': 'block', 'children': ['84']}; {'id': '84', 'type': 'expression_statement', 'children': ['85']}, {'id': '85', 'type': 'call', 'children': ['86', '89']}; {'id': '86', 'type': 'attribute', 'children': ['87', '88']}, {'id': '87', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '89', 'type': 'argument_list', 'children': ['90']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '91', 'type': 'else_clause', 'children': ['92']}; {'id': '92', 'type': 'block', 'children': ['93']}, {'id': '93', 'type': 'expression_statement', 'children': ['94']}; {'id': '94', 'type': 'call', 'children': ['95', '98']}, {'id': '95', 'type': 'attribute', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'unknown'}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '98', 'type': 'argument_list', 'children': ['99']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '100', 'type': 'return_statement', 'children': ['101']}, {'id': '101', 'type': 'expression_list', 'children': ['102', '103', '104', '105']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'layout'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'data'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'int_vol'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'unknown'} | def by_type(blocks, slist=None):
layout = []
data = []
int_vol = []
unknown = []
for i in blocks:
if slist and i not in slist:
continue
if blocks[i].is_vtbl and blocks[i].is_valid:
layout.append(i)
elif blocks[i].is_internal_vol and blocks[i].is_valid:
int_vol.append(i)
elif blocks[i].is_valid:
data.append(i)
else:
unknown.append(i)
return layout, data, int_vol, unknown |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'group_pairs'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'blocks'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'layout_blocks_list'}; {'id': '6', 'type': 'block', 'children': ['7', '11', '48', '63']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'image_dict'}; {'id': '10', 'type': 'dictionary', 'children': []}, {'id': '11', 'type': 'for_statement', 'children': ['12', '13', '14']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'block_id'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'layout_blocks_list'}; {'id': '14', 'type': 'block', 'children': ['15', '25']}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'image_seq'}; {'id': '18', 'type': 'attribute', 'children': ['19', '24']}, {'id': '19', 'type': 'attribute', 'children': ['20', '23']}; {'id': '20', 'type': 'subscript', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'blocks'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'block_id'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'ec_hdr'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'image_seq'}, {'id': '25', 'type': 'if_statement', 'children': ['26', '29', '37']}; {'id': '26', 'type': 'comparison_operator', 'children': ['27', '28'], 'value': 'not'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'image_seq'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'image_dict'}, {'id': '29', 'type': 'block', 'children': ['30']}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}, {'id': '31', 'type': 'assignment', 'children': ['32', '35']}; {'id': '32', 'type': 'subscript', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'image_dict'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'image_seq'}, {'id': '35', 'type': 'list', 'children': ['36'], 'value': '[block_id]'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'block_id'}, {'id': '37', 'type': 'else_clause', 'children': ['38']}; {'id': '38', 'type': 'block', 'children': ['39']}, {'id': '39', 'type': 'expression_statement', 'children': ['40']}; {'id': '40', 'type': 'call', 'children': ['41', '46']}, {'id': '41', 'type': 'attribute', 'children': ['42', '45']}; {'id': '42', 'type': 'subscript', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'image_dict'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'image_seq'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '46', 'type': 'argument_list', 'children': ['47']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'block_id'}; {'id': '48', 'type': 'expression_statement', 'children': ['49']}, {'id': '49', 'type': 'call', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'log'}, {'id': '51', 'type': 'argument_list', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'group_pairs'}, {'id': '53', 'type': 'binary_operator', 'children': ['54', '55'], 'value': '%'}; {'id': '54', 'type': 'string', 'children': [], 'value': "'Layout blocks found at PEBs: %s'"}, {'id': '55', 'type': 'call', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '57', 'type': 'argument_list', 'children': ['58']}; {'id': '58', 'type': 'call', 'children': ['59', '62']}, {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'image_dict'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'values'}; {'id': '62', 'type': 'argument_list', 'children': []}, {'id': '63', 'type': 'return_statement', 'children': ['64']}; {'id': '64', 'type': 'call', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '66', 'type': 'argument_list', 'children': ['67']}, {'id': '67', 'type': 'call', 'children': ['68', '71']}; {'id': '68', 'type': 'attribute', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'image_dict'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'values'}, {'id': '71', 'type': 'argument_list', 'children': []} | def group_pairs(blocks, layout_blocks_list):
image_dict={}
for block_id in layout_blocks_list:
image_seq=blocks[block_id].ec_hdr.image_seq
if image_seq not in image_dict:
image_dict[image_seq]=[block_id]
else:
image_dict[image_seq].append(block_id)
log(group_pairs, 'Layout blocks found at PEBs: %s' % list(image_dict.values()))
return list(image_dict.values()) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'read_cBpack'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'filename'}, {'id': '5', 'type': 'block', 'children': ['6', '32', '38', '72']}; {'id': '6', 'type': 'with_statement', 'children': ['7', '19']}, {'id': '7', 'type': 'with_clause', 'children': ['8']}; {'id': '8', 'type': 'with_item', 'children': ['9']}, {'id': '9', 'type': 'as_pattern', 'children': ['10', '17']}; {'id': '10', 'type': 'call', 'children': ['11', '14']}, {'id': '11', 'type': 'attribute', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'gzip'}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'open'}; {'id': '14', 'type': 'argument_list', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'filename'}; {'id': '16', 'type': 'string', 'children': [], 'value': "'rb'"}, {'id': '17', 'type': 'as_pattern_target', 'children': ['18']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'infile'}, {'id': '19', 'type': 'block', 'children': ['20']}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '23', 'type': 'call', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'msgpack'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'load'}, {'id': '27', 'type': 'argument_list', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'infile'}, {'id': '29', 'type': 'keyword_argument', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'raw'}, {'id': '31', 'type': 'False', 'children': []}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}, {'id': '33', 'type': 'assignment', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'header'}, {'id': '35', 'type': 'subscript', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '37', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '38', 'type': 'if_statement', 'children': ['39', '64']}, {'id': '39', 'type': 'parenthesized_expression', 'children': ['40']}; {'id': '40', 'type': 'boolean_operator', 'children': ['41', '56'], 'value': 'or'}, {'id': '41', 'type': 'boolean_operator', 'children': ['42', '48'], 'value': 'or'}; {'id': '42', 'type': 'not_operator', 'children': ['43']}, {'id': '43', 'type': 'call', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '45', 'type': 'argument_list', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'header'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'dict'}; {'id': '48', 'type': 'comparison_operator', 'children': ['49', '55'], 'value': '!='}, {'id': '49', 'type': 'call', 'children': ['50', '53']}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'header'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '53', 'type': 'argument_list', 'children': ['54']}; {'id': '54', 'type': 'string', 'children': [], 'value': "'format'"}, {'id': '55', 'type': 'string', 'children': [], 'value': "'cB'"}; {'id': '56', 'type': 'comparison_operator', 'children': ['57', '63'], 'value': '!='}, {'id': '57', 'type': 'call', 'children': ['58', '61']}; {'id': '58', 'type': 'attribute', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'header'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '61', 'type': 'argument_list', 'children': ['62']}; {'id': '62', 'type': 'string', 'children': [], 'value': "'version'"}, {'id': '63', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '64', 'type': 'block', 'children': ['65']}, {'id': '65', 'type': 'raise_statement', 'children': ['66']}; {'id': '66', 'type': 'call', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '68', 'type': 'argument_list', 'children': ['69']}, {'id': '69', 'type': 'binary_operator', 'children': ['70', '71'], 'value': '%'}; {'id': '70', 'type': 'string', 'children': [], 'value': '"Unexpected header: %r"'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'header'}; {'id': '72', 'type': 'return_statement', 'children': ['73']}, {'id': '73', 'type': 'subscript', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'data'}, {'id': '75', 'type': 'slice', 'children': ['76', '77']}; {'id': '76', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '77', 'type': 'colon', 'children': []} | def read_cBpack(filename):
with gzip.open(filename, 'rb') as infile:
data = msgpack.load(infile, raw=False)
header = data[0]
if (
not isinstance(header, dict) or header.get('format') != 'cB'
or header.get('version') != 1
):
raise ValueError("Unexpected header: %r" % header)
return data[1:] |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'addDiscreteOutcomeConstantMean'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'distribution'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '9', 'type': 'False', 'children': []}; {'id': '10', 'type': 'block', 'children': ['11', '13', '37', '54', '78']}, {'id': '11', 'type': 'expression_statement', 'children': ['12']}; {'id': '12', 'type': 'string', 'children': [], 'value': "'''\n Adds a discrete outcome of x with probability p to an existing distribution,\n holding constant the relative probabilities of other outcomes and overall mean.\n Parameters\n ----------\n distribution : [np.array]\n Two element list containing a list of probabilities and a list of outcomes.\n x : float\n The new value to be added to the distribution.\n p : float\n The probability of the discrete outcome x occuring.\n sort: bool\n Whether or not to sort X before returning it\n Returns\n -------\n X : np.array\n Discrete points for discrete probability mass function.\n pmf : np.array\n Probability associated with each point in X.\n Written by Matthew N. White\n Latest update: 08 December 2015 by David Low\n '''"}, {'id': '13', 'type': 'expression_statement', 'children': ['14']}; {'id': '14', 'type': 'assignment', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'X'}; {'id': '16', 'type': 'call', 'children': ['17', '20']}, {'id': '17', 'type': 'attribute', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '20', 'type': 'argument_list', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '22', 'type': 'binary_operator', 'children': ['23', '33'], 'value': '/'}, {'id': '23', 'type': 'binary_operator', 'children': ['24', '27'], 'value': '*'}; {'id': '24', 'type': 'subscript', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'distribution'}; {'id': '26', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '27', 'type': 'parenthesized_expression', 'children': ['28']}; {'id': '28', 'type': 'binary_operator', 'children': ['29', '30'], 'value': '-'}, {'id': '29', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '30', 'type': 'binary_operator', 'children': ['31', '32'], 'value': '*'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '33', 'type': 'parenthesized_expression', 'children': ['34']}; {'id': '34', 'type': 'binary_operator', 'children': ['35', '36'], 'value': '-'}, {'id': '35', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '37', 'type': 'expression_statement', 'children': ['38']}; {'id': '38', 'type': 'assignment', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'pmf'}; {'id': '40', 'type': 'call', 'children': ['41', '44']}, {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '44', 'type': 'argument_list', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '46', 'type': 'binary_operator', 'children': ['47', '50'], 'value': '*'}, {'id': '47', 'type': 'subscript', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'distribution'}, {'id': '49', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '50', 'type': 'parenthesized_expression', 'children': ['51']}, {'id': '51', 'type': 'binary_operator', 'children': ['52', '53'], 'value': '-'}; {'id': '52', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '54', 'type': 'if_statement', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '56', 'type': 'block', 'children': ['57', '66', '72']}, {'id': '57', 'type': 'expression_statement', 'children': ['58']}; {'id': '58', 'type': 'assignment', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'indices'}; {'id': '60', 'type': 'call', 'children': ['61', '64']}, {'id': '61', 'type': 'attribute', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'argsort'}; {'id': '64', 'type': 'argument_list', 'children': ['65']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'X'}; {'id': '66', 'type': 'expression_statement', 'children': ['67']}, {'id': '67', 'type': 'assignment', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'X'}, {'id': '69', 'type': 'subscript', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'X'}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'indices'}; {'id': '72', 'type': 'expression_statement', 'children': ['73']}, {'id': '73', 'type': 'assignment', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'pmf'}, {'id': '75', 'type': 'subscript', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'pmf'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'indices'}; {'id': '78', 'type': 'return_statement', 'children': ['79']}, {'id': '79', 'type': 'parenthesized_expression', 'children': ['80']}; {'id': '80', 'type': 'list', 'children': ['81', '82'], 'value': '[pmf,X]'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'pmf'} | def addDiscreteOutcomeConstantMean(distribution, x, p, sort = False):
'''
Adds a discrete outcome of x with probability p to an existing distribution,
holding constant the relative probabilities of other outcomes and overall mean.
Parameters
----------
distribution : [np.array]
Two element list containing a list of probabilities and a list of outcomes.
x : float
The new value to be added to the distribution.
p : float
The probability of the discrete outcome x occuring.
sort: bool
Whether or not to sort X before returning it
Returns
-------
X : np.array
Discrete points for discrete probability mass function.
pmf : np.array
Probability associated with each point in X.
Written by Matthew N. White
Latest update: 08 December 2015 by David Low
'''
X = np.append(x,distribution[1]*(1-p*x)/(1-p))
pmf = np.append(p,distribution[0]*(1-p))
if sort:
indices = np.argsort(X)
X = X[indices]
pmf = pmf[indices]
return([pmf,X]) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '10']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'runStickyEregressionsInStata'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8', '9']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'infile_name'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'interval_size'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'meas_err'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'sticky'}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'all_specs'}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'stata_exe'}; {'id': '10', 'type': 'block', 'children': ['11', '13', '17', '32', '45', '58', '75', '87', '97', '112', '157']}, {'id': '11', 'type': 'expression_statement', 'children': ['12']}; {'id': '12', 'type': 'string', 'children': [], 'value': '\'\'\'\n Runs regressions for the main tables of the StickyC paper in Stata and produces a\n LaTeX table with results for one "panel". Running in Stata allows production of\n the KP-statistic, for which there is currently no command in statsmodels.api.\n Parameters\n ----------\n infile_name : str\n Name of tab-delimited text file with simulation data. Assumed to be in\n the results directory, and was almost surely generated by makeStickyEdataFile\n unless we resort to fabricating simulated data. THAT\'S A JOKE, FUTURE REFEREES.\n interval_size : int\n Number of periods in each regression sample (or interval).\n meas_err : bool\n Indicator for whether to add measurement error to DeltaLogC.\n sticky : bool\n Indicator for whether these results used sticky expectations.\n all_specs : bool\n Indicator for whether this panel should include all specifications or\n just the OLS on lagged consumption growth.\n stata_exe : str\n Absolute location where the Stata executable can be found on the computer\n running this code. Usually set at the top of StickyEparams.py.\n Returns\n -------\n panel_text : str\n String with one panel\'s worth of LaTeX input.\n \'\'\''}, {'id': '13', 'type': 'expression_statement', 'children': ['14']}; {'id': '14', 'type': 'assignment', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'dofile'}; {'id': '16', 'type': 'string', 'children': [], 'value': '"StickyETimeSeries.do"'}, {'id': '17', 'type': 'expression_statement', 'children': ['18']}; {'id': '18', 'type': 'assignment', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'infile_name_full'}; {'id': '20', 'type': 'call', 'children': ['21', '26']}, {'id': '21', 'type': 'attribute', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'os'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'path'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'abspath'}; {'id': '26', 'type': 'argument_list', 'children': ['27']}, {'id': '27', 'type': 'binary_operator', 'children': ['28', '31'], 'value': '+'}; {'id': '28', 'type': 'binary_operator', 'children': ['29', '30'], 'value': '+'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'results_dir'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'infile_name'}, {'id': '31', 'type': 'string', 'children': [], 'value': '".txt"'}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}, {'id': '33', 'type': 'assignment', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'temp_name_full'}, {'id': '35', 'type': 'call', 'children': ['36', '41']}; {'id': '36', 'type': 'attribute', 'children': ['37', '40']}, {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'os'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'path'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'abspath'}, {'id': '41', 'type': 'argument_list', 'children': ['42']}; {'id': '42', 'type': 'binary_operator', 'children': ['43', '44'], 'value': '+'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'results_dir'}; {'id': '44', 'type': 'string', 'children': [], 'value': '"temp.txt"'}, {'id': '45', 'type': 'if_statement', 'children': ['46', '47', '52']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'meas_err'}, {'id': '47', 'type': 'block', 'children': ['48']}; {'id': '48', 'type': 'expression_statement', 'children': ['49']}, {'id': '49', 'type': 'assignment', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'meas_err_stata'}, {'id': '51', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '52', 'type': 'else_clause', 'children': ['53']}, {'id': '53', 'type': 'block', 'children': ['54']}; {'id': '54', 'type': 'expression_statement', 'children': ['55']}, {'id': '55', 'type': 'assignment', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'meas_err_stata'}, {'id': '57', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '58', 'type': 'expression_statement', 'children': ['59']}, {'id': '59', 'type': 'assignment', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'cmd'}, {'id': '61', 'type': 'list', 'children': ['62', '63', '64', '65', '66', '67', '71'], 'value': '[stata_exe, "do", dofile, infile_name_full, temp_name_full, str(interval_size), str(meas_err_stata)]'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'stata_exe'}, {'id': '63', 'type': 'string', 'children': [], 'value': '"do"'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'dofile'}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'infile_name_full'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'temp_name_full'}, {'id': '67', 'type': 'call', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '69', 'type': 'argument_list', 'children': ['70']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'interval_size'}, {'id': '71', 'type': 'call', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '73', 'type': 'argument_list', 'children': ['74']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'meas_err_stata'}, {'id': '75', 'type': 'expression_statement', 'children': ['76']}; {'id': '76', 'type': 'assignment', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'stata_status'}; {'id': '78', 'type': 'call', 'children': ['79', '82']}, {'id': '79', 'type': 'attribute', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'subprocess'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'call'}; {'id': '82', 'type': 'argument_list', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'cmd'}; {'id': '84', 'type': 'keyword_argument', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'shell'}; {'id': '86', 'type': 'string', 'children': [], 'value': "'true'"}, {'id': '87', 'type': 'if_statement', 'children': ['88', '91']}; {'id': '88', 'type': 'comparison_operator', 'children': ['89', '90'], 'value': '!='}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'stata_status'}; {'id': '90', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '91', 'type': 'block', 'children': ['92']}; {'id': '92', 'type': 'raise_statement', 'children': ['93']}, {'id': '93', 'type': 'call', 'children': ['94', '95']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '95', 'type': 'argument_list', 'children': ['96']}; {'id': '96', 'type': 'string', 'children': [], 'value': "'Stata code could not run. Check the stata_exe in StickyEparams.py'"}, {'id': '97', 'type': 'expression_statement', 'children': ['98']}; {'id': '98', 'type': 'assignment', 'children': ['99', '100']}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'stata_output'}; {'id': '100', 'type': 'call', 'children': ['101', '104']}, {'id': '101', 'type': 'attribute', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'pd'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'read_csv'}; {'id': '104', 'type': 'argument_list', 'children': ['105', '106', '109']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'temp_name_full'}; {'id': '106', 'type': 'keyword_argument', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'sep'}; {'id': '108', 'type': 'string', 'children': [], 'value': "','"}, {'id': '109', 'type': 'keyword_argument', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'header'}, {'id': '111', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '112', 'type': 'expression_statement', 'children': ['113']}, {'id': '113', 'type': 'assignment', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'panel_text'}, {'id': '115', 'type': 'call', 'children': ['116', '117']}; {'id': '116', 'type': 'identifier', 'children': [], 'value': 'makeResultsPanel'}, {'id': '117', 'type': 'argument_list', 'children': ['118', '123', '128', '133', '138', '143', '148', '151', '154']}; {'id': '118', 'type': 'keyword_argument', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'Coeffs'}; {'id': '120', 'type': 'attribute', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'stata_output'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'CoeffsArray'}, {'id': '123', 'type': 'keyword_argument', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'StdErrs'}, {'id': '125', 'type': 'attribute', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'stata_output'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'StdErrArray'}; {'id': '128', 'type': 'keyword_argument', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'Rsq'}; {'id': '130', 'type': 'attribute', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'stata_output'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'RsqArray'}, {'id': '133', 'type': 'keyword_argument', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'Pvals'}, {'id': '135', 'type': 'attribute', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'stata_output'}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'PvalArray'}; {'id': '138', 'type': 'keyword_argument', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'OID'}; {'id': '140', 'type': 'attribute', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'stata_output'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'OIDarray'}, {'id': '143', 'type': 'keyword_argument', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'Counts'}, {'id': '145', 'type': 'attribute', 'children': ['146', '147']}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'stata_output'}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'ExtraInfo'}; {'id': '148', 'type': 'keyword_argument', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'meas_err'}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'meas_err'}, {'id': '151', 'type': 'keyword_argument', 'children': ['152', '153']}; {'id': '152', 'type': 'identifier', 'children': [], 'value': 'sticky'}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'sticky'}; {'id': '154', 'type': 'keyword_argument', 'children': ['155', '156']}, {'id': '155', 'type': 'identifier', 'children': [], 'value': 'all_specs'}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'all_specs'}, {'id': '157', 'type': 'return_statement', 'children': ['158']} | def runStickyEregressionsInStata(infile_name,interval_size,meas_err,sticky,all_specs,stata_exe):
'''
Runs regressions for the main tables of the StickyC paper in Stata and produces a
LaTeX table with results for one "panel". Running in Stata allows production of
the KP-statistic, for which there is currently no command in statsmodels.api.
Parameters
----------
infile_name : str
Name of tab-delimited text file with simulation data. Assumed to be in
the results directory, and was almost surely generated by makeStickyEdataFile
unless we resort to fabricating simulated data. THAT'S A JOKE, FUTURE REFEREES.
interval_size : int
Number of periods in each regression sample (or interval).
meas_err : bool
Indicator for whether to add measurement error to DeltaLogC.
sticky : bool
Indicator for whether these results used sticky expectations.
all_specs : bool
Indicator for whether this panel should include all specifications or
just the OLS on lagged consumption growth.
stata_exe : str
Absolute location where the Stata executable can be found on the computer
running this code. Usually set at the top of StickyEparams.py.
Returns
-------
panel_text : str
String with one panel's worth of LaTeX input.
'''
dofile = "StickyETimeSeries.do"
infile_name_full = os.path.abspath(results_dir + infile_name + ".txt")
temp_name_full = os.path.abspath(results_dir + "temp.txt")
if meas_err:
meas_err_stata = 1
else:
meas_err_stata = 0
cmd = [stata_exe, "do", dofile, infile_name_full, temp_name_full, str(interval_size), str(meas_err_stata)]
stata_status = subprocess.call(cmd,shell = 'true')
if stata_status!=0:
raise ValueError('Stata code could not run. Check the stata_exe in StickyEparams.py')
stata_output = pd.read_csv(temp_name_full, sep=',',header=0)
panel_text = makeResultsPanel(Coeffs=stata_output.CoeffsArray,
StdErrs=stata_output.StdErrArray,
Rsq=stata_output.RsqArray,
Pvals=stata_output.PvalArray,
OID=stata_output.OIDarray,
Counts=stata_output.ExtraInfo,
meas_err=meas_err,
sticky=sticky,
all_specs=all_specs)
return panel_text |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'capability_functions'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'fn'}; {'id': '6', 'type': 'block', 'children': ['7', '18', '22', '66', '80', '91']}, {'id': '7', 'type': 'if_statement', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': '_debug'}, {'id': '9', 'type': 'block', 'children': ['10']}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}, {'id': '11', 'type': 'call', 'children': ['12', '15']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'Collector'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': '_debug'}, {'id': '15', 'type': 'argument_list', 'children': ['16', '17']}; {'id': '16', 'type': 'string', 'children': [], 'value': '"capability_functions %r"'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'fn'}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}, {'id': '19', 'type': 'assignment', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'fns'}, {'id': '21', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '22', 'type': 'for_statement', 'children': ['23', '24', '27']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'capabilities'}, {'id': '27', 'type': 'block', 'children': ['28', '37', '49']}; {'id': '28', 'type': 'expression_statement', 'children': ['29']}, {'id': '29', 'type': 'assignment', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'xfn'}, {'id': '31', 'type': 'call', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'getattr'}, {'id': '33', 'type': 'argument_list', 'children': ['34', '35', '36']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'fn'}; {'id': '36', 'type': 'None', 'children': []}, {'id': '37', 'type': 'if_statement', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': '_debug'}, {'id': '39', 'type': 'block', 'children': ['40']}; {'id': '40', 'type': 'expression_statement', 'children': ['41']}, {'id': '41', 'type': 'call', 'children': ['42', '45']}; {'id': '42', 'type': 'attribute', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'Collector'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': '_debug'}, {'id': '45', 'type': 'argument_list', 'children': ['46', '47', '48']}; {'id': '46', 'type': 'string', 'children': [], 'value': '" - cls, xfn: %r, %r"'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'cls'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'xfn'}, {'id': '49', 'type': 'if_statement', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'xfn'}, {'id': '51', 'type': 'block', 'children': ['52']}; {'id': '52', 'type': 'expression_statement', 'children': ['53']}, {'id': '53', 'type': 'call', 'children': ['54', '57']}; {'id': '54', 'type': 'attribute', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'fns'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '57', 'type': 'argument_list', 'children': ['58']}; {'id': '58', 'type': 'tuple', 'children': ['59', '65']}, {'id': '59', 'type': 'call', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'getattr'}, {'id': '61', 'type': 'argument_list', 'children': ['62', '63', '64']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'cls'}, {'id': '63', 'type': 'string', 'children': [], 'value': "'_zindex'"}; {'id': '64', 'type': 'None', 'children': []}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'xfn'}; {'id': '66', 'type': 'expression_statement', 'children': ['67']}, {'id': '67', 'type': 'call', 'children': ['68', '71']}; {'id': '68', 'type': 'attribute', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'fns'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '71', 'type': 'argument_list', 'children': ['72']}; {'id': '72', 'type': 'keyword_argument', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '74', 'type': 'lambda', 'children': ['75', '77']}, {'id': '75', 'type': 'lambda_parameters', 'children': ['76']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'v'}, {'id': '77', 'type': 'subscript', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'v'}, {'id': '79', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '80', 'type': 'if_statement', 'children': ['81', '82']}, {'id': '81', 'type': 'identifier', 'children': [], 'value': '_debug'}; {'id': '82', 'type': 'block', 'children': ['83']}, {'id': '83', 'type': 'expression_statement', 'children': ['84']}; {'id': '84', 'type': 'call', 'children': ['85', '88']}, {'id': '85', 'type': 'attribute', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'Collector'}, {'id': '87', 'type': 'identifier', 'children': [], 'value': '_debug'}; {'id': '88', 'type': 'argument_list', 'children': ['89', '90']}, {'id': '89', 'type': 'string', 'children': [], 'value': '" - fns: %r"'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'fns'}, {'id': '91', 'type': 'for_statement', 'children': ['92', '95', '96']}; {'id': '92', 'type': 'pattern_list', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'xindx'}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'xfn'}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'fns'}; {'id': '96', 'type': 'block', 'children': ['97', '108']}, {'id': '97', 'type': 'if_statement', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': '_debug'}, {'id': '99', 'type': 'block', 'children': ['100']}; {'id': '100', 'type': 'expression_statement', 'children': ['101']}, {'id': '101', 'type': 'call', 'children': ['102', '105']}; {'id': '102', 'type': 'attribute', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'Collector'}; {'id': '104', 'type': 'identifier', 'children': [], 'value': '_debug'}, {'id': '105', 'type': 'argument_list', 'children': ['106', '107']}; {'id': '106', 'type': 'string', 'children': [], 'value': '" - yield xfn: %r"'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'xfn'}; {'id': '108', 'type': 'expression_statement', 'children': ['109']}, {'id': '109', 'type': 'yield', 'children': ['110']} | def capability_functions(self, fn):
if _debug: Collector._debug("capability_functions %r", fn)
fns = []
for cls in self.capabilities:
xfn = getattr(cls, fn, None)
if _debug: Collector._debug(" - cls, xfn: %r, %r", cls, xfn)
if xfn:
fns.append( (getattr(cls, '_zindex', None), xfn) )
fns.sort(key=lambda v: v[0])
if _debug: Collector._debug(" - fns: %r", fns)
for xindx, xfn in fns:
if _debug: Collector._debug(" - yield xfn: %r", xfn)
yield xfn |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'add'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'list_splat_pattern', 'children': ['6']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '7', 'type': 'block', 'children': ['8', '35']}; {'id': '8', 'type': 'for_statement', 'children': ['9', '10', '11']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'items'}, {'id': '11', 'type': 'block', 'children': ['12', '21', '27']}; {'id': '12', 'type': 'expression_statement', 'children': ['13']}, {'id': '13', 'type': 'call', 'children': ['14', '19']}; {'id': '14', 'type': 'attribute', 'children': ['15', '18']}, {'id': '15', 'type': 'attribute', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'unsorted'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '19', 'type': 'argument_list', 'children': ['20']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '24', 'type': 'subscript', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '26', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'assignment', 'children': ['29', '34']}, {'id': '29', 'type': 'subscript', 'children': ['30', '33']}; {'id': '30', 'type': 'attribute', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '35', 'type': 'return_statement', 'children': ['36']} | def add(self, *items):
for item in items:
self.unsorted.append(item)
key = item[0]
self.index[key] = item
return self |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '14', '22', '129', '137']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '11']}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '11', 'type': 'call', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'list'}, {'id': '13', 'type': 'argument_list', 'children': []}; {'id': '14', 'type': 'expression_statement', 'children': ['15']}, {'id': '15', 'type': 'assignment', 'children': ['16', '19']}; {'id': '16', 'type': 'attribute', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'pushed'}, {'id': '19', 'type': 'call', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '21', 'type': 'argument_list', 'children': []}; {'id': '22', 'type': 'for_statement', 'children': ['23', '24', '27']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'unsorted'}, {'id': '27', 'type': 'block', 'children': ['28', '32', '39', '116']}; {'id': '28', 'type': 'expression_statement', 'children': ['29']}, {'id': '29', 'type': 'assignment', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'popped'}, {'id': '31', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '32', 'type': 'expression_statement', 'children': ['33']}, {'id': '33', 'type': 'call', 'children': ['34', '37']}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'push'}, {'id': '37', 'type': 'argument_list', 'children': ['38']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '39', 'type': 'while_statement', 'children': ['40', '46']}; {'id': '40', 'type': 'call', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '42', 'type': 'argument_list', 'children': ['43']}, {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'stack'}; {'id': '46', 'type': 'block', 'children': ['47']}, {'id': '47', 'type': 'try_statement', 'children': ['48', '101']}; {'id': '48', 'type': 'block', 'children': ['49', '57', '66', '77', '94']}, {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'assignment', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'top'}; {'id': '52', 'type': 'call', 'children': ['53', '56']}, {'id': '53', 'type': 'attribute', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'top'}; {'id': '56', 'type': 'argument_list', 'children': []}, {'id': '57', 'type': 'expression_statement', 'children': ['58']}; {'id': '58', 'type': 'assignment', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'ref'}; {'id': '60', 'type': 'call', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'next'}; {'id': '62', 'type': 'argument_list', 'children': ['63']}, {'id': '63', 'type': 'subscript', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'top'}, {'id': '65', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '66', 'type': 'expression_statement', 'children': ['67']}, {'id': '67', 'type': 'assignment', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'refd'}, {'id': '69', 'type': 'call', 'children': ['70', '75']}; {'id': '70', 'type': 'attribute', 'children': ['71', '74']}, {'id': '71', 'type': 'attribute', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'index'}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '75', 'type': 'argument_list', 'children': ['76']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'ref'}, {'id': '77', 'type': 'if_statement', 'children': ['78', '81']}; {'id': '78', 'type': 'comparison_operator', 'children': ['79', '80'], 'value': 'is'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'refd'}; {'id': '80', 'type': 'None', 'children': []}, {'id': '81', 'type': 'block', 'children': ['82', '93']}; {'id': '82', 'type': 'expression_statement', 'children': ['83']}, {'id': '83', 'type': 'call', 'children': ['84', '87']}; {'id': '84', 'type': 'attribute', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'log'}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'debug'}, {'id': '87', 'type': 'argument_list', 'children': ['88', '89']}; {'id': '88', 'type': 'string', 'children': [], 'value': '\'"%s" not found, skipped\''}, {'id': '89', 'type': 'call', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'Repr'}, {'id': '91', 'type': 'argument_list', 'children': ['92']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'ref'}, {'id': '93', 'type': 'continue_statement', 'children': []}; {'id': '94', 'type': 'expression_statement', 'children': ['95']}, {'id': '95', 'type': 'call', 'children': ['96', '99']}; {'id': '96', 'type': 'attribute', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'push'}, {'id': '99', 'type': 'argument_list', 'children': ['100']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'refd'}, {'id': '101', 'type': 'except_clause', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'StopIteration'}, {'id': '103', 'type': 'block', 'children': ['104', '115']}; {'id': '104', 'type': 'expression_statement', 'children': ['105']}, {'id': '105', 'type': 'call', 'children': ['106', '109']}; {'id': '106', 'type': 'attribute', 'children': ['107', '108']}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'popped'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '109', 'type': 'argument_list', 'children': ['110']}; {'id': '110', 'type': 'call', 'children': ['111', '114']}, {'id': '111', 'type': 'attribute', 'children': ['112', '113']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'pop'}; {'id': '114', 'type': 'argument_list', 'children': []}, {'id': '115', 'type': 'continue_statement', 'children': []}; {'id': '116', 'type': 'for_statement', 'children': ['117', '118', '119']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'p'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'popped'}, {'id': '119', 'type': 'block', 'children': ['120']}; {'id': '120', 'type': 'expression_statement', 'children': ['121']}, {'id': '121', 'type': 'call', 'children': ['122', '127']}; {'id': '122', 'type': 'attribute', 'children': ['123', '126']}, {'id': '123', 'type': 'attribute', 'children': ['124', '125']}; {'id': '124', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '127', 'type': 'argument_list', 'children': ['128']}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'p'}, {'id': '129', 'type': 'expression_statement', 'children': ['130']}; {'id': '130', 'type': 'assignment', 'children': ['131', '134']}, {'id': '131', 'type': 'attribute', 'children': ['132', '133']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'unsorted'}; {'id': '134', 'type': 'attribute', 'children': ['135', '136']}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '137', 'type': 'return_statement', 'children': ['138']}; {'id': '138', 'type': 'attribute', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'self'} | def sort(self):
self.sorted = list()
self.pushed = set()
for item in self.unsorted:
popped = []
self.push(item)
while len(self.stack):
try:
top = self.top()
ref = next(top[1])
refd = self.index.get(ref)
if refd is None:
log.debug('"%s" not found, skipped', Repr(ref))
continue
self.push(refd)
except StopIteration:
popped.append(self.pop())
continue
for p in popped:
self.sorted.append(p)
self.unsorted = self.sorted
return self.sorted |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'push'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '6', 'type': 'block', 'children': ['7', '15', '26', '35']}, {'id': '7', 'type': 'if_statement', 'children': ['8', '13']}; {'id': '8', 'type': 'comparison_operator', 'children': ['9', '10'], 'value': 'in'}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'pushed'}, {'id': '13', 'type': 'block', 'children': ['14']}; {'id': '14', 'type': 'return_statement', 'children': []}, {'id': '15', 'type': 'expression_statement', 'children': ['16']}; {'id': '16', 'type': 'assignment', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'frame'}; {'id': '18', 'type': 'tuple', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '20', 'type': 'call', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'iter'}; {'id': '22', 'type': 'argument_list', 'children': ['23']}, {'id': '23', 'type': 'subscript', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '25', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}, {'id': '27', 'type': 'call', 'children': ['28', '33']}; {'id': '28', 'type': 'attribute', 'children': ['29', '32']}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'stack'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '33', 'type': 'argument_list', 'children': ['34']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'frame'}, {'id': '35', 'type': 'expression_statement', 'children': ['36']}; {'id': '36', 'type': 'call', 'children': ['37', '42']}, {'id': '37', 'type': 'attribute', 'children': ['38', '41']}; {'id': '38', 'type': 'attribute', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'pushed'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'add'}; {'id': '42', 'type': 'argument_list', 'children': ['43']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'item'} | def push(self, item):
if item in self.pushed:
return
frame = (item, iter(item[1]))
self.stack.append(frame)
self.pushed.add(item) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '6']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'content'}; {'id': '6', 'type': 'block', 'children': ['7', '13', '39']}, {'id': '7', 'type': 'expression_statement', 'children': ['8']}; {'id': '8', 'type': 'assignment', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '10', 'type': 'attribute', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'content'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'value'}, {'id': '13', 'type': 'if_statement', 'children': ['14', '19']}; {'id': '14', 'type': 'call', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'isinstance'}; {'id': '16', 'type': 'argument_list', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'v'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'Object'}, {'id': '19', 'type': 'block', 'children': ['20', '26']}; {'id': '20', 'type': 'expression_statement', 'children': ['21']}, {'id': '21', 'type': 'assignment', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'md'}, {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'v'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': '__metadata__'}; {'id': '26', 'type': 'expression_statement', 'children': ['27']}, {'id': '27', 'type': 'assignment', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'md'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'ordering'}, {'id': '31', 'type': 'call', 'children': ['32', '35']}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'ordering'}, {'id': '35', 'type': 'argument_list', 'children': ['36']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'content'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'real'}, {'id': '39', 'type': 'return_statement', 'children': ['40']} | def sort(self, content):
v = content.value
if isinstance(v, Object):
md = v.__metadata__
md.ordering = self.ordering(content.real)
return self |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'alerts'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'alert_level'}, {'id': '7', 'type': 'string', 'children': [], 'value': "'High'"}; {'id': '8', 'type': 'block', 'children': ['9', '21', '29', '65']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'alerts'}; {'id': '12', 'type': 'call', 'children': ['13', '20']}, {'id': '13', 'type': 'attribute', 'children': ['14', '19']}; {'id': '14', 'type': 'attribute', 'children': ['15', '18']}, {'id': '15', 'type': 'attribute', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'zap'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'core'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'alerts'}; {'id': '20', 'type': 'argument_list', 'children': []}, {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'alert_level_value'}; {'id': '24', 'type': 'subscript', 'children': ['25', '28']}, {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'alert_levels'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'alert_level'}, {'id': '29', 'type': 'expression_statement', 'children': ['30']}; {'id': '30', 'type': 'assignment', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'alerts'}; {'id': '32', 'type': 'call', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '34', 'type': 'argument_list', 'children': ['35', '50', '62']}, {'id': '35', 'type': 'generator_expression', 'children': ['36', '37', '40']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'a'}, {'id': '37', 'type': 'for_in_clause', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'a'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'alerts'}; {'id': '40', 'type': 'if_clause', 'children': ['41']}, {'id': '41', 'type': 'comparison_operator', 'children': ['42', '49'], 'value': '>='}; {'id': '42', 'type': 'subscript', 'children': ['43', '46']}, {'id': '43', 'type': 'attribute', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'alert_levels'}; {'id': '46', 'type': 'subscript', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'a'}; {'id': '48', 'type': 'string', 'children': [], 'value': "'risk'"}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'alert_level_value'}; {'id': '50', 'type': 'keyword_argument', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '52', 'type': 'lambda', 'children': ['53', '55']}, {'id': '53', 'type': 'lambda_parameters', 'children': ['54']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '55', 'type': 'subscript', 'children': ['56', '59']}; {'id': '56', 'type': 'attribute', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'alert_levels'}, {'id': '59', 'type': 'subscript', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'k'}, {'id': '61', 'type': 'string', 'children': [], 'value': "'risk'"}; {'id': '62', 'type': 'keyword_argument', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'reverse'}; {'id': '64', 'type': 'True', 'children': []}, {'id': '65', 'type': 'return_statement', 'children': ['66']} | def alerts(self, alert_level='High'):
alerts = self.zap.core.alerts()
alert_level_value = self.alert_levels[alert_level]
alerts = sorted((a for a in alerts if self.alert_levels[a['risk']] >= alert_level_value),
key=lambda k: self.alert_levels[k['risk']], reverse=True)
return alerts |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'assortativity_bin'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'CIJ'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'flag'}, {'id': '7', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '8', 'type': 'block', 'children': ['9', '11', '168', '181', '202', '222', '234']}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'string', 'children': [], 'value': "'''\n The assortativity coefficient is a correlation coefficient between the\n degrees of all nodes on two opposite ends of a link. A positive\n assortativity coefficient indicates that nodes tend to link to other\n nodes with the same or similar degree.\n Parameters\n ----------\n CIJ : NxN np.ndarray\n binary directed/undirected connection matrix\n flag : int\n 0 : undirected graph; degree/degree correlation\n 1 : directed graph; out-degree/in-degree correlation\n 2 : directed graph; in-degree/out-degree correlation\n 3 : directed graph; out-degree/out-degree correlation\n 4 : directed graph; in-degree/in-degreen correlation\n Returns\n -------\n r : float\n assortativity coefficient\n Notes\n -----\n The function accepts weighted networks, but all connection\n weights are ignored. The main diagonal should be empty. For flag 1\n the function computes the directed assortativity described in Rubinov\n and Sporns (2010) NeuroImage.\n '''"}, {'id': '11', 'type': 'if_statement', 'children': ['12', '15', '61']}; {'id': '12', 'type': 'comparison_operator', 'children': ['13', '14'], 'value': '=='}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'flag'}; {'id': '14', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '15', 'type': 'block', 'children': ['16', '23', '42', '49', '55']}; {'id': '16', 'type': 'expression_statement', 'children': ['17']}, {'id': '17', 'type': 'assignment', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'deg'}, {'id': '19', 'type': 'call', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'degrees_und'}, {'id': '21', 'type': 'argument_list', 'children': ['22']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'CIJ'}, {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'assignment', 'children': ['25', '28']}, {'id': '25', 'type': 'pattern_list', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '28', 'type': 'call', 'children': ['29', '32']}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'where'}; {'id': '32', 'type': 'argument_list', 'children': ['33']}, {'id': '33', 'type': 'comparison_operator', 'children': ['34', '41'], 'value': '>'}; {'id': '34', 'type': 'call', 'children': ['35', '38']}, {'id': '35', 'type': 'attribute', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'triu'}; {'id': '38', 'type': 'argument_list', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'CIJ'}; {'id': '40', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '41', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '42', 'type': 'expression_statement', 'children': ['43']}, {'id': '43', 'type': 'assignment', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'K'}, {'id': '45', 'type': 'call', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '47', 'type': 'argument_list', 'children': ['48']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'assignment', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'degi'}; {'id': '52', 'type': 'subscript', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'deg'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '55', 'type': 'expression_statement', 'children': ['56']}; {'id': '56', 'type': 'assignment', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'degj'}; {'id': '58', 'type': 'subscript', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'deg'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'j'}, {'id': '61', 'type': 'else_clause', 'children': ['62']}; {'id': '62', 'type': 'block', 'children': ['63', '73', '86', '93']}, {'id': '63', 'type': 'expression_statement', 'children': ['64']}; {'id': '64', 'type': 'assignment', 'children': ['65', '69']}, {'id': '65', 'type': 'pattern_list', 'children': ['66', '67', '68']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'id'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'od'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'deg'}, {'id': '69', 'type': 'call', 'children': ['70', '71']}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'degrees_dir'}, {'id': '71', 'type': 'argument_list', 'children': ['72']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'CIJ'}, {'id': '73', 'type': 'expression_statement', 'children': ['74']}; {'id': '74', 'type': 'assignment', 'children': ['75', '78']}, {'id': '75', 'type': 'pattern_list', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '78', 'type': 'call', 'children': ['79', '82']}, {'id': '79', 'type': 'attribute', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'where'}; {'id': '82', 'type': 'argument_list', 'children': ['83']}, {'id': '83', 'type': 'comparison_operator', 'children': ['84', '85'], 'value': '>'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'CIJ'}, {'id': '85', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '86', 'type': 'expression_statement', 'children': ['87']}, {'id': '87', 'type': 'assignment', 'children': ['88', '89']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'K'}, {'id': '89', 'type': 'call', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '91', 'type': 'argument_list', 'children': ['92']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '93', 'type': 'if_statement', 'children': ['94', '97', '110', '127', '144', '161']}; {'id': '94', 'type': 'comparison_operator', 'children': ['95', '96'], 'value': '=='}, {'id': '95', 'type': 'identifier', 'children': [], 'value': 'flag'}; {'id': '96', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '97', 'type': 'block', 'children': ['98', '104']}; {'id': '98', 'type': 'expression_statement', 'children': ['99']}, {'id': '99', 'type': 'assignment', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'degi'}, {'id': '101', 'type': 'subscript', 'children': ['102', '103']}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'od'}, {'id': '103', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '104', 'type': 'expression_statement', 'children': ['105']}, {'id': '105', 'type': 'assignment', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'degj'}, {'id': '107', 'type': 'subscript', 'children': ['108', '109']}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'id'}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '110', 'type': 'elif_clause', 'children': ['111', '114']}, {'id': '111', 'type': 'comparison_operator', 'children': ['112', '113'], 'value': '=='}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'flag'}, {'id': '113', 'type': 'integer', 'children': [], 'value': '2'}; {'id': '114', 'type': 'block', 'children': ['115', '121']}, {'id': '115', 'type': 'expression_statement', 'children': ['116']}; {'id': '116', 'type': 'assignment', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'degi'}; {'id': '118', 'type': 'subscript', 'children': ['119', '120']}, {'id': '119', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '120', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '121', 'type': 'expression_statement', 'children': ['122']}; {'id': '122', 'type': 'assignment', 'children': ['123', '124']}, {'id': '123', 'type': 'identifier', 'children': [], 'value': 'degj'}; {'id': '124', 'type': 'subscript', 'children': ['125', '126']}, {'id': '125', 'type': 'identifier', 'children': [], 'value': 'od'}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'j'}, {'id': '127', 'type': 'elif_clause', 'children': ['128', '131']}; {'id': '128', 'type': 'comparison_operator', 'children': ['129', '130'], 'value': '=='}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'flag'}; {'id': '130', 'type': 'integer', 'children': [], 'value': '3'}, {'id': '131', 'type': 'block', 'children': ['132', '138']}; {'id': '132', 'type': 'expression_statement', 'children': ['133']}, {'id': '133', 'type': 'assignment', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'degi'}, {'id': '135', 'type': 'subscript', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'od'}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '138', 'type': 'expression_statement', 'children': ['139']}, {'id': '139', 'type': 'assignment', 'children': ['140', '141']}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'degj'}, {'id': '141', 'type': 'subscript', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'od'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'j'}; {'id': '144', 'type': 'elif_clause', 'children': ['145', '148']}, {'id': '145', 'type': 'comparison_operator', 'children': ['146', '147'], 'value': '=='}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'flag'}, {'id': '147', 'type': 'integer', 'children': [], 'value': '4'}; {'id': '148', 'type': 'block', 'children': ['149', '155']}, {'id': '149', 'type': 'expression_statement', 'children': ['150']}; {'id': '150', 'type': 'assignment', 'children': ['151', '152']}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'degi'}; {'id': '152', 'type': 'subscript', 'children': ['153', '154']}, {'id': '153', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '155', 'type': 'expression_statement', 'children': ['156']}; {'id': '156', 'type': 'assignment', 'children': ['157', '158']}, {'id': '157', 'type': 'identifier', 'children': [], 'value': 'degj'}; {'id': '158', 'type': 'subscript', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'j'}, {'id': '161', 'type': 'else_clause', 'children': ['162']}; {'id': '162', 'type': 'block', 'children': ['163']}, {'id': '163', 'type': 'raise_statement', 'children': ['164']}; {'id': '164', 'type': 'call', 'children': ['165', '166']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '166', 'type': 'argument_list', 'children': ['167']}, {'id': '167', 'type': 'string', 'children': [], 'value': "'Flag must be 0-4'"}; {'id': '168', 'type': 'expression_statement', 'children': ['169']}, {'id': '169', 'type': 'assignment', 'children': ['170', '171']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'term1'}, {'id': '171', 'type': 'binary_operator', 'children': ['172', '180'], 'value': '/'}; {'id': '172', 'type': 'call', 'children': ['173', '176']}, {'id': '173', 'type': 'attribute', 'children': ['174', '175']}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'sum'}; {'id': '176', 'type': 'argument_list', 'children': ['177']}, {'id': '177', 'type': 'binary_operator', 'children': ['178', '179'], 'value': '*'}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'degi'}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'degj'}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'K'}, {'id': '181', 'type': 'expression_statement', 'children': ['182']}; {'id': '182', 'type': 'assignment', 'children': ['183', '184']}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'term2'}; {'id': '184', 'type': 'call', 'children': ['185', '188']}, {'id': '185', 'type': 'attribute', 'children': ['186', '187']}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '187', 'type': 'identifier', 'children': [], 'value': 'square'}; {'id': '188', 'type': 'argument_list', 'children': ['189']}, {'id': '189', 'type': 'binary_operator', 'children': ['190', '201'], 'value': '/'}; {'id': '190', 'type': 'call', 'children': ['191', '194']}, {'id': '191', 'type': 'attribute', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'sum'}; {'id': '194', 'type': 'argument_list', 'children': ['195']}, {'id': '195', 'type': 'binary_operator', 'children': ['196', '197'], 'value': '*'}; {'id': '196', 'type': 'float', 'children': [], 'value': '.5'}, {'id': '197', 'type': 'parenthesized_expression', 'children': ['198']}; {'id': '198', 'type': 'binary_operator', 'children': ['199', '200'], 'value': '+'}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'degi'}; {'id': '200', 'type': 'identifier', 'children': [], 'value': 'degj'}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'K'}; {'id': '202', 'type': 'expression_statement', 'children': ['203']}, {'id': '203', 'type': 'assignment', 'children': ['204', '205']}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'term3'}, {'id': '205', 'type': 'binary_operator', 'children': ['206', '221'], 'value': '/'}; {'id': '206', 'type': 'call', 'children': ['207', '210']}, {'id': '207', 'type': 'attribute', 'children': ['208', '209']}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'sum'}; {'id': '210', 'type': 'argument_list', 'children': ['211']}, {'id': '211', 'type': 'binary_operator', 'children': ['212', '213'], 'value': '*'}; {'id': '212', 'type': 'float', 'children': [], 'value': '.5'}, {'id': '213', 'type': 'parenthesized_expression', 'children': ['214']}; {'id': '214', 'type': 'binary_operator', 'children': ['215', '218'], 'value': '+'}, {'id': '215', 'type': 'binary_operator', 'children': ['216', '217'], 'value': '*'}; {'id': '216', 'type': 'identifier', 'children': [], 'value': 'degi'}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'degi'}; {'id': '218', 'type': 'binary_operator', 'children': ['219', '220'], 'value': '*'}, {'id': '219', 'type': 'identifier', 'children': [], 'value': 'degj'}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'degj'}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'K'}; {'id': '222', 'type': 'expression_statement', 'children': ['223']}, {'id': '223', 'type': 'assignment', 'children': ['224', '225']}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'r'}, {'id': '225', 'type': 'binary_operator', 'children': ['226', '230'], 'value': '/'}; {'id': '226', 'type': 'parenthesized_expression', 'children': ['227']}, {'id': '227', 'type': 'binary_operator', 'children': ['228', '229'], 'value': '-'}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'term1'}, {'id': '229', 'type': 'identifier', 'children': [], 'value': 'term2'}; {'id': '230', 'type': 'parenthesized_expression', 'children': ['231']}, {'id': '231', 'type': 'binary_operator', 'children': ['232', '233'], 'value': '-'}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'term3'}, {'id': '233', 'type': 'identifier', 'children': [], 'value': 'term2'}; {'id': '234', 'type': 'return_statement', 'children': ['235']}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'r'} | def assortativity_bin(CIJ, flag=0):
'''
The assortativity coefficient is a correlation coefficient between the
degrees of all nodes on two opposite ends of a link. A positive
assortativity coefficient indicates that nodes tend to link to other
nodes with the same or similar degree.
Parameters
----------
CIJ : NxN np.ndarray
binary directed/undirected connection matrix
flag : int
0 : undirected graph; degree/degree correlation
1 : directed graph; out-degree/in-degree correlation
2 : directed graph; in-degree/out-degree correlation
3 : directed graph; out-degree/out-degree correlation
4 : directed graph; in-degree/in-degreen correlation
Returns
-------
r : float
assortativity coefficient
Notes
-----
The function accepts weighted networks, but all connection
weights are ignored. The main diagonal should be empty. For flag 1
the function computes the directed assortativity described in Rubinov
and Sporns (2010) NeuroImage.
'''
if flag == 0:
deg = degrees_und(CIJ)
i, j = np.where(np.triu(CIJ, 1) > 0)
K = len(i)
degi = deg[i]
degj = deg[j]
else:
id, od, deg = degrees_dir(CIJ)
i, j = np.where(CIJ > 0)
K = len(i)
if flag == 1:
degi = od[i]
degj = id[j]
elif flag == 2:
degi = id[i]
degj = od[j]
elif flag == 3:
degi = od[i]
degj = od[j]
elif flag == 4:
degi = id[i]
degj = id[j]
else:
raise ValueError('Flag must be 0-4')
term1 = np.sum(degi * degj) / K
term2 = np.square(np.sum(.5 * (degi + degj)) / K)
term3 = np.sum(.5 * (degi * degi + degj * degj)) / K
r = (term1 - term2) / (term3 - term2)
return r |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort_coords'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'coord'}, {'id': '5', 'type': 'block', 'children': ['6', '9', '27', '38']}; {'id': '6', 'type': 'import_statement', 'children': ['7']}, {'id': '7', 'type': 'dotted_name', 'children': ['8']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'iris'}, {'id': '9', 'type': 'expression_statement', 'children': ['10']}; {'id': '10', 'type': 'assignment', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'order'}; {'id': '12', 'type': 'dictionary', 'children': ['13', '17', '21', '24']}, {'id': '13', 'type': 'pair', 'children': ['14', '15']}; {'id': '14', 'type': 'string', 'children': [], 'value': "'T'"}, {'id': '15', 'type': 'unary_operator', 'children': ['16'], 'value': '-'}; {'id': '16', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '17', 'type': 'pair', 'children': ['18', '19']}; {'id': '18', 'type': 'string', 'children': [], 'value': "'Z'"}, {'id': '19', 'type': 'unary_operator', 'children': ['20'], 'value': '-'}; {'id': '20', 'type': 'integer', 'children': [], 'value': '1'}, {'id': '21', 'type': 'pair', 'children': ['22', '23']}; {'id': '22', 'type': 'string', 'children': [], 'value': "'X'"}, {'id': '23', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '24', 'type': 'pair', 'children': ['25', '26']}, {'id': '25', 'type': 'string', 'children': [], 'value': "'Y'"}; {'id': '26', 'type': 'integer', 'children': [], 'value': '2'}, {'id': '27', 'type': 'expression_statement', 'children': ['28']}; {'id': '28', 'type': 'assignment', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'axis'}; {'id': '30', 'type': 'call', 'children': ['31', '36']}, {'id': '31', 'type': 'attribute', 'children': ['32', '35']}; {'id': '32', 'type': 'attribute', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'iris'}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'util'}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'guess_coord_axis'}; {'id': '36', 'type': 'argument_list', 'children': ['37']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'coord'}; {'id': '38', 'type': 'return_statement', 'children': ['39']}, {'id': '39', 'type': 'tuple', 'children': ['40', '47']}; {'id': '40', 'type': 'call', 'children': ['41', '44']}, {'id': '41', 'type': 'attribute', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'order'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '44', 'type': 'argument_list', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'axis'}; {'id': '46', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '47', 'type': 'boolean_operator', 'children': ['48', '49'], 'value': 'and'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'coord'}, {'id': '49', 'type': 'call', 'children': ['50', '53']}; {'id': '50', 'type': 'attribute', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'coord'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '53', 'type': 'argument_list', 'children': []} | def sort_coords(coord):
import iris
order = {'T': -2, 'Z': -1, 'X': 1, 'Y': 2}
axis = iris.util.guess_coord_axis(coord)
return (order.get(axis, 0), coord and coord.name()) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '7']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'separate_groups'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'groups'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'total'}, {'id': '7', 'type': 'block', 'children': ['8', '21', '33', '41', '56', '71', '77', '83']}; {'id': '8', 'type': 'expression_statement', 'children': ['9']}, {'id': '9', 'type': 'assignment', 'children': ['10', '13']}; {'id': '10', 'type': 'pattern_list', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'optimum'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'extra'}, {'id': '13', 'type': 'call', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'compute_optimum'}, {'id': '15', 'type': 'argument_list', 'children': ['16', '20']}; {'id': '16', 'type': 'call', 'children': ['17', '18']}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '18', 'type': 'argument_list', 'children': ['19']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'groups'}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'total'}, {'id': '21', 'type': 'expression_statement', 'children': ['22']}; {'id': '22', 'type': 'assignment', 'children': ['23', '27']}, {'id': '23', 'type': 'pattern_list', 'children': ['24', '25', '26']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'over_loaded'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'under_loaded'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'optimal'}, {'id': '27', 'type': 'call', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': '_smart_separate_groups'}, {'id': '29', 'type': 'argument_list', 'children': ['30', '31', '32']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'groups'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'total'}, {'id': '33', 'type': 'if_statement', 'children': ['34', '36']}; {'id': '34', 'type': 'not_operator', 'children': ['35']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'extra'}; {'id': '36', 'type': 'block', 'children': ['37']}, {'id': '37', 'type': 'return_statement', 'children': ['38']}; {'id': '38', 'type': 'expression_list', 'children': ['39', '40']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'over_loaded'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'under_loaded'}, {'id': '41', 'type': 'expression_statement', 'children': ['42']}; {'id': '42', 'type': 'assignment', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'potential_under_loaded'}; {'id': '44', 'type': 'list_comprehension', 'children': ['45', '46', '49']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'group'}; {'id': '46', 'type': 'for_in_clause', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'group'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'optimal'}, {'id': '49', 'type': 'if_clause', 'children': ['50']}; {'id': '50', 'type': 'comparison_operator', 'children': ['51', '55'], 'value': '=='}, {'id': '51', 'type': 'call', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '53', 'type': 'argument_list', 'children': ['54']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'group'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'optimum'}; {'id': '56', 'type': 'expression_statement', 'children': ['57']}, {'id': '57', 'type': 'assignment', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'potential_over_loaded'}, {'id': '59', 'type': 'list_comprehension', 'children': ['60', '61', '64']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'group'}, {'id': '61', 'type': 'for_in_clause', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'group'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'optimal'}; {'id': '64', 'type': 'if_clause', 'children': ['65']}, {'id': '65', 'type': 'comparison_operator', 'children': ['66', '70'], 'value': '>'}; {'id': '66', 'type': 'call', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '68', 'type': 'argument_list', 'children': ['69']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'group'}; {'id': '70', 'type': 'identifier', 'children': [], 'value': 'optimum'}, {'id': '71', 'type': 'expression_statement', 'children': ['72']}; {'id': '72', 'type': 'assignment', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'revised_under_loaded'}; {'id': '74', 'type': 'binary_operator', 'children': ['75', '76'], 'value': '+'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'under_loaded'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'potential_under_loaded'}, {'id': '77', 'type': 'expression_statement', 'children': ['78']}; {'id': '78', 'type': 'assignment', 'children': ['79', '80']}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'revised_over_loaded'}; {'id': '80', 'type': 'binary_operator', 'children': ['81', '82'], 'value': '+'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'over_loaded'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'potential_over_loaded'}, {'id': '83', 'type': 'return_statement', 'children': ['84']}; {'id': '84', 'type': 'tuple', 'children': ['85', '95']}, {'id': '85', 'type': 'call', 'children': ['86', '87']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '87', 'type': 'argument_list', 'children': ['88', '89', '92']}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'revised_over_loaded'}, {'id': '89', 'type': 'keyword_argument', 'children': ['90', '91']}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '92', 'type': 'keyword_argument', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'reverse'}; {'id': '94', 'type': 'True', 'children': []}, {'id': '95', 'type': 'call', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '97', 'type': 'argument_list', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'revised_under_loaded'}, {'id': '99', 'type': 'keyword_argument', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'key'} | def separate_groups(groups, key, total):
optimum, extra = compute_optimum(len(groups), total)
over_loaded, under_loaded, optimal = _smart_separate_groups(groups, key, total)
if not extra:
return over_loaded, under_loaded
potential_under_loaded = [
group for group in optimal
if key(group) == optimum
]
potential_over_loaded = [
group for group in optimal
if key(group) > optimum
]
revised_under_loaded = under_loaded + potential_under_loaded
revised_over_loaded = over_loaded + potential_over_loaded
return (
sorted(revised_over_loaded, key=key, reverse=True),
sorted(revised_under_loaded, key=key),
) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '17']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'zrange'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8', '11', '14']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'start'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'end'}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'desc'}; {'id': '10', 'type': 'False', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'withscores'}, {'id': '13', 'type': 'False', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'score_cast_func'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'float'}, {'id': '17', 'type': 'block', 'children': ['18', '33', '41', '54', '64']}; {'id': '18', 'type': 'if_statement', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'desc'}; {'id': '20', 'type': 'block', 'children': ['21']}, {'id': '21', 'type': 'return_statement', 'children': ['22']}; {'id': '22', 'type': 'await', 'children': ['23']}, {'id': '23', 'type': 'call', 'children': ['24', '27']}; {'id': '24', 'type': 'attribute', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'zrevrange'}, {'id': '27', 'type': 'argument_list', 'children': ['28', '29', '30', '31', '32']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'start'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'end'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'withscores'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'score_cast_func'}, {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'assignment', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'pieces'}; {'id': '36', 'type': 'list', 'children': ['37', '38', '39', '40'], 'value': "['ZRANGE', name, start, end]"}, {'id': '37', 'type': 'string', 'children': [], 'value': "'ZRANGE'"}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'start'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'end'}, {'id': '41', 'type': 'if_statement', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'withscores'}, {'id': '43', 'type': 'block', 'children': ['44']}; {'id': '44', 'type': 'expression_statement', 'children': ['45']}, {'id': '45', 'type': 'call', 'children': ['46', '49']}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'pieces'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '49', 'type': 'argument_list', 'children': ['50']}; {'id': '50', 'type': 'call', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'b'}; {'id': '52', 'type': 'argument_list', 'children': ['53']}, {'id': '53', 'type': 'string', 'children': [], 'value': "'WITHSCORES'"}; {'id': '54', 'type': 'expression_statement', 'children': ['55']}, {'id': '55', 'type': 'assignment', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'options'}, {'id': '57', 'type': 'dictionary', 'children': ['58', '61']}; {'id': '58', 'type': 'pair', 'children': ['59', '60']}, {'id': '59', 'type': 'string', 'children': [], 'value': "'withscores'"}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'withscores'}, {'id': '61', 'type': 'pair', 'children': ['62', '63']}; {'id': '62', 'type': 'string', 'children': [], 'value': "'score_cast_func'"}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'score_cast_func'}; {'id': '64', 'type': 'return_statement', 'children': ['65']}, {'id': '65', 'type': 'await', 'children': ['66']}; {'id': '66', 'type': 'call', 'children': ['67', '70']}, {'id': '67', 'type': 'attribute', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'execute_command'}; {'id': '70', 'type': 'argument_list', 'children': ['71', '73']}, {'id': '71', 'type': 'list_splat', 'children': ['72']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'pieces'}, {'id': '73', 'type': 'dictionary_splat', 'children': ['74']} | async def zrange(self, name, start, end, desc=False, withscores=False,
score_cast_func=float):
if desc:
return await self.zrevrange(name, start, end, withscores,
score_cast_func)
pieces = ['ZRANGE', name, start, end]
if withscores:
pieces.append(b('WITHSCORES'))
options = {
'withscores': withscores,
'score_cast_func': score_cast_func
}
return await self.execute_command(*pieces, **options) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '8']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'zremrangebyscore'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'min'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'max'}; {'id': '8', 'type': 'block', 'children': ['9']}, {'id': '9', 'type': 'return_statement', 'children': ['10']}; {'id': '10', 'type': 'await', 'children': ['11']}, {'id': '11', 'type': 'call', 'children': ['12', '15']}; {'id': '12', 'type': 'attribute', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'execute_command'}, {'id': '15', 'type': 'argument_list', 'children': ['16', '17', '18', '19']}; {'id': '16', 'type': 'string', 'children': [], 'value': "'ZREMRANGEBYSCORE'"}, {'id': '17', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'min'}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'max'} | async def zremrangebyscore(self, name, min, max):
return await self.execute_command('ZREMRANGEBYSCORE', name, min, max) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '33']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'georadius'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8', '9', '12', '15', '18', '21', '24', '27', '30']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'longitude'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'latitude'}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'radius'}, {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'unit'}, {'id': '11', 'type': 'None', 'children': []}; {'id': '12', 'type': 'default_parameter', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'withdist'}; {'id': '14', 'type': 'False', 'children': []}, {'id': '15', 'type': 'default_parameter', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'withcoord'}, {'id': '17', 'type': 'False', 'children': []}; {'id': '18', 'type': 'default_parameter', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'withhash'}; {'id': '20', 'type': 'False', 'children': []}, {'id': '21', 'type': 'default_parameter', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'count'}, {'id': '23', 'type': 'None', 'children': []}; {'id': '24', 'type': 'default_parameter', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '26', 'type': 'None', 'children': []}, {'id': '27', 'type': 'default_parameter', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'store'}, {'id': '29', 'type': 'None', 'children': []}; {'id': '30', 'type': 'default_parameter', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'store_dist'}; {'id': '32', 'type': 'None', 'children': []}, {'id': '33', 'type': 'block', 'children': ['34']}; {'id': '34', 'type': 'return_statement', 'children': ['35']}, {'id': '35', 'type': 'await', 'children': ['36']}; {'id': '36', 'type': 'call', 'children': ['37', '40']}, {'id': '37', 'type': 'attribute', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '39', 'type': 'identifier', 'children': [], 'value': '_georadiusgeneric'}; {'id': '40', 'type': 'argument_list', 'children': ['41', '42', '43', '44', '45', '46', '49', '52', '55', '58', '61', '64', '67']}, {'id': '41', 'type': 'string', 'children': [], 'value': "'GEORADIUS'"}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'longitude'}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'latitude'}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'radius'}; {'id': '46', 'type': 'keyword_argument', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'unit'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'unit'}, {'id': '49', 'type': 'keyword_argument', 'children': ['50', '51']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'withdist'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'withdist'}; {'id': '52', 'type': 'keyword_argument', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'withcoord'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'withcoord'}, {'id': '55', 'type': 'keyword_argument', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'withhash'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'withhash'}; {'id': '58', 'type': 'keyword_argument', 'children': ['59', '60']}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'count'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'count'}, {'id': '61', 'type': 'keyword_argument', 'children': ['62', '63']}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '64', 'type': 'keyword_argument', 'children': ['65', '66']}, {'id': '65', 'type': 'identifier', 'children': [], 'value': 'store'}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'store'}, {'id': '67', 'type': 'keyword_argument', 'children': ['68', '69']}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'store_dist'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'store_dist'} | async def georadius(self, name, longitude, latitude, radius, unit=None,
withdist=False, withcoord=False, withhash=False, count=None,
sort=None, store=None, store_dist=None):
return await self._georadiusgeneric('GEORADIUS',
name, longitude, latitude, radius,
unit=unit, withdist=withdist,
withcoord=withcoord, withhash=withhash,
count=count, sort=sort, store=store,
store_dist=store_dist) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '32']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'georadiusbymember'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '8', '11', '14', '17', '20', '23', '26', '29']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'member'}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'radius'}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'unit'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'withdist'}, {'id': '13', 'type': 'False', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'withcoord'}; {'id': '16', 'type': 'False', 'children': []}, {'id': '17', 'type': 'default_parameter', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'withhash'}, {'id': '19', 'type': 'False', 'children': []}; {'id': '20', 'type': 'default_parameter', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'count'}; {'id': '22', 'type': 'None', 'children': []}, {'id': '23', 'type': 'default_parameter', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '25', 'type': 'None', 'children': []}; {'id': '26', 'type': 'default_parameter', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'store'}; {'id': '28', 'type': 'None', 'children': []}, {'id': '29', 'type': 'default_parameter', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'store_dist'}, {'id': '31', 'type': 'None', 'children': []}; {'id': '32', 'type': 'block', 'children': ['33']}, {'id': '33', 'type': 'return_statement', 'children': ['34']}; {'id': '34', 'type': 'await', 'children': ['35']}, {'id': '35', 'type': 'call', 'children': ['36', '39']}; {'id': '36', 'type': 'attribute', 'children': ['37', '38']}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '38', 'type': 'identifier', 'children': [], 'value': '_georadiusgeneric'}, {'id': '39', 'type': 'argument_list', 'children': ['40', '41', '42', '43', '44', '47', '50', '53', '56', '59', '62', '65']}; {'id': '40', 'type': 'string', 'children': [], 'value': "'GEORADIUSBYMEMBER'"}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'member'}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'radius'}; {'id': '44', 'type': 'keyword_argument', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'unit'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'unit'}, {'id': '47', 'type': 'keyword_argument', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'withdist'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'withdist'}; {'id': '50', 'type': 'keyword_argument', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'withcoord'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'withcoord'}, {'id': '53', 'type': 'keyword_argument', 'children': ['54', '55']}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'withhash'}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'withhash'}; {'id': '56', 'type': 'keyword_argument', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'count'}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'count'}, {'id': '59', 'type': 'keyword_argument', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '62', 'type': 'keyword_argument', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'store'}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'store'}, {'id': '65', 'type': 'keyword_argument', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'store_dist'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'store_dist'} | async def georadiusbymember(self, name, member, radius, unit=None,
withdist=False, withcoord=False, withhash=False,
count=None, sort=None, store=None, store_dist=None):
return await self._georadiusgeneric('GEORADIUSBYMEMBER',
name, member, radius, unit=unit,
withdist=withdist, withcoord=withcoord,
withhash=withhash, count=count,
sort=sort, store=store,
store_dist=store_dist) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '32']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'search'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17', '20', '23', '26', '29']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'page'}, {'id': '7', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'per_page'}; {'id': '10', 'type': 'integer', 'children': [], 'value': '50'}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'q'}; {'id': '16', 'type': 'None', 'children': []}, {'id': '17', 'type': 'default_parameter', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'include_totals'}, {'id': '19', 'type': 'True', 'children': []}; {'id': '20', 'type': 'default_parameter', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'fields'}; {'id': '22', 'type': 'None', 'children': []}, {'id': '23', 'type': 'default_parameter', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'from_param'}, {'id': '25', 'type': 'None', 'children': []}; {'id': '26', 'type': 'default_parameter', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'take'}; {'id': '28', 'type': 'None', 'children': []}, {'id': '29', 'type': 'default_parameter', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'include_fields'}, {'id': '31', 'type': 'True', 'children': []}; {'id': '32', 'type': 'block', 'children': ['33', '87']}, {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'assignment', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '36', 'type': 'dictionary', 'children': ['37', '40', '43', '53', '56', '68', '78', '81', '84']}, {'id': '37', 'type': 'pair', 'children': ['38', '39']}; {'id': '38', 'type': 'string', 'children': [], 'value': "'per_page'"}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'per_page'}; {'id': '40', 'type': 'pair', 'children': ['41', '42']}, {'id': '41', 'type': 'string', 'children': [], 'value': "'page'"}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'page'}, {'id': '43', 'type': 'pair', 'children': ['44', '45']}; {'id': '44', 'type': 'string', 'children': [], 'value': "'include_totals'"}, {'id': '45', 'type': 'call', 'children': ['46', '52']}; {'id': '46', 'type': 'attribute', 'children': ['47', '51']}, {'id': '47', 'type': 'call', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '49', 'type': 'argument_list', 'children': ['50']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'include_totals'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'lower'}; {'id': '52', 'type': 'argument_list', 'children': []}, {'id': '53', 'type': 'pair', 'children': ['54', '55']}; {'id': '54', 'type': 'string', 'children': [], 'value': "'sort'"}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '56', 'type': 'pair', 'children': ['57', '58']}, {'id': '57', 'type': 'string', 'children': [], 'value': "'fields'"}; {'id': '58', 'type': 'boolean_operator', 'children': ['59', '67'], 'value': 'or'}, {'id': '59', 'type': 'boolean_operator', 'children': ['60', '61'], 'value': 'and'}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'fields'}, {'id': '61', 'type': 'call', 'children': ['62', '65']}; {'id': '62', 'type': 'attribute', 'children': ['63', '64']}, {'id': '63', 'type': 'string', 'children': [], 'value': "','"}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'join'}, {'id': '65', 'type': 'argument_list', 'children': ['66']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'fields'}, {'id': '67', 'type': 'None', 'children': []}; {'id': '68', 'type': 'pair', 'children': ['69', '70']}, {'id': '69', 'type': 'string', 'children': [], 'value': "'include_fields'"}; {'id': '70', 'type': 'call', 'children': ['71', '77']}, {'id': '71', 'type': 'attribute', 'children': ['72', '76']}; {'id': '72', 'type': 'call', 'children': ['73', '74']}, {'id': '73', 'type': 'identifier', 'children': [], 'value': 'str'}; {'id': '74', 'type': 'argument_list', 'children': ['75']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'include_fields'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'lower'}, {'id': '77', 'type': 'argument_list', 'children': []}; {'id': '78', 'type': 'pair', 'children': ['79', '80']}, {'id': '79', 'type': 'string', 'children': [], 'value': "'q'"}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'q'}, {'id': '81', 'type': 'pair', 'children': ['82', '83']}; {'id': '82', 'type': 'string', 'children': [], 'value': "'from'"}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'from_param'}; {'id': '84', 'type': 'pair', 'children': ['85', '86']}, {'id': '85', 'type': 'string', 'children': [], 'value': "'take'"}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'take'}, {'id': '87', 'type': 'return_statement', 'children': ['88']}; {'id': '88', 'type': 'call', 'children': ['89', '94']}, {'id': '89', 'type': 'attribute', 'children': ['90', '93']}; {'id': '90', 'type': 'attribute', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'client'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '94', 'type': 'argument_list', 'children': ['95', '100']}, {'id': '95', 'type': 'call', 'children': ['96', '99']}; {'id': '96', 'type': 'attribute', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': '_url'}, {'id': '99', 'type': 'argument_list', 'children': []}; {'id': '100', 'type': 'keyword_argument', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'params'} | def search(self, page=0, per_page=50, sort=None, q=None,
include_totals=True, fields=None, from_param=None, take=None,
include_fields=True):
params = {
'per_page': per_page,
'page': page,
'include_totals': str(include_totals).lower(),
'sort': sort,
'fields': fields and ','.join(fields) or None,
'include_fields': str(include_fields).lower(),
'q': q,
'from': from_param,
'take': take
}
return self.client.get(self._url(), params=params) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '32']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'list'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17', '20', '23', '26', '29']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'page'}, {'id': '7', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'per_page'}; {'id': '10', 'type': 'integer', 'children': [], 'value': '25'}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'connection'}; {'id': '16', 'type': 'None', 'children': []}, {'id': '17', 'type': 'default_parameter', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'q'}, {'id': '19', 'type': 'None', 'children': []}; {'id': '20', 'type': 'default_parameter', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'search_engine'}; {'id': '22', 'type': 'None', 'children': []}, {'id': '23', 'type': 'default_parameter', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'include_totals'}, {'id': '25', 'type': 'True', 'children': []}; {'id': '26', 'type': 'default_parameter', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'fields'}; {'id': '28', 'type': 'None', 'children': []}, {'id': '29', 'type': 'default_parameter', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'include_fields'}, {'id': '31', 'type': 'True', 'children': []}; {'id': '32', 'type': 'block', 'children': ['33', '87']}, {'id': '33', 'type': 'expression_statement', 'children': ['34']}; {'id': '34', 'type': 'assignment', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '36', 'type': 'dictionary', 'children': ['37', '40', '43', '53', '56', '59', '71', '81', '84']}, {'id': '37', 'type': 'pair', 'children': ['38', '39']}; {'id': '38', 'type': 'string', 'children': [], 'value': "'per_page'"}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'per_page'}; {'id': '40', 'type': 'pair', 'children': ['41', '42']}, {'id': '41', 'type': 'string', 'children': [], 'value': "'page'"}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'page'}, {'id': '43', 'type': 'pair', 'children': ['44', '45']}; {'id': '44', 'type': 'string', 'children': [], 'value': "'include_totals'"}, {'id': '45', 'type': 'call', 'children': ['46', '52']}; {'id': '46', 'type': 'attribute', 'children': ['47', '51']}, {'id': '47', 'type': 'call', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '49', 'type': 'argument_list', 'children': ['50']}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'include_totals'}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'lower'}; {'id': '52', 'type': 'argument_list', 'children': []}, {'id': '53', 'type': 'pair', 'children': ['54', '55']}; {'id': '54', 'type': 'string', 'children': [], 'value': "'sort'"}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '56', 'type': 'pair', 'children': ['57', '58']}, {'id': '57', 'type': 'string', 'children': [], 'value': "'connection'"}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'connection'}, {'id': '59', 'type': 'pair', 'children': ['60', '61']}; {'id': '60', 'type': 'string', 'children': [], 'value': "'fields'"}, {'id': '61', 'type': 'boolean_operator', 'children': ['62', '70'], 'value': 'or'}; {'id': '62', 'type': 'boolean_operator', 'children': ['63', '64'], 'value': 'and'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'fields'}; {'id': '64', 'type': 'call', 'children': ['65', '68']}, {'id': '65', 'type': 'attribute', 'children': ['66', '67']}; {'id': '66', 'type': 'string', 'children': [], 'value': "','"}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'join'}; {'id': '68', 'type': 'argument_list', 'children': ['69']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'fields'}; {'id': '70', 'type': 'None', 'children': []}, {'id': '71', 'type': 'pair', 'children': ['72', '73']}; {'id': '72', 'type': 'string', 'children': [], 'value': "'include_fields'"}, {'id': '73', 'type': 'call', 'children': ['74', '80']}; {'id': '74', 'type': 'attribute', 'children': ['75', '79']}, {'id': '75', 'type': 'call', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '77', 'type': 'argument_list', 'children': ['78']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'include_fields'}, {'id': '79', 'type': 'identifier', 'children': [], 'value': 'lower'}; {'id': '80', 'type': 'argument_list', 'children': []}, {'id': '81', 'type': 'pair', 'children': ['82', '83']}; {'id': '82', 'type': 'string', 'children': [], 'value': "'q'"}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'q'}; {'id': '84', 'type': 'pair', 'children': ['85', '86']}, {'id': '85', 'type': 'string', 'children': [], 'value': "'search_engine'"}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'search_engine'}, {'id': '87', 'type': 'return_statement', 'children': ['88']}; {'id': '88', 'type': 'call', 'children': ['89', '94']}, {'id': '89', 'type': 'attribute', 'children': ['90', '93']}; {'id': '90', 'type': 'attribute', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'client'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '94', 'type': 'argument_list', 'children': ['95', '100']}, {'id': '95', 'type': 'call', 'children': ['96', '99']}; {'id': '96', 'type': 'attribute', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': '_url'}, {'id': '99', 'type': 'argument_list', 'children': []}; {'id': '100', 'type': 'keyword_argument', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'params'} | def list(self, page=0, per_page=25, sort=None, connection=None, q=None,
search_engine=None, include_totals=True, fields=None,
include_fields=True):
params = {
'per_page': per_page,
'page': page,
'include_totals': str(include_totals).lower(),
'sort': sort,
'connection': connection,
'fields': fields and ','.join(fields) or None,
'include_fields': str(include_fields).lower(),
'q': q,
'search_engine': search_engine
}
return self.client.get(self._url(), params=params) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '18']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_log_events'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12', '15']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'user_id'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'page'}; {'id': '8', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'per_page'}, {'id': '11', 'type': 'integer', 'children': [], 'value': '50'}; {'id': '12', 'type': 'default_parameter', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '14', 'type': 'None', 'children': []}, {'id': '15', 'type': 'default_parameter', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'include_totals'}, {'id': '17', 'type': 'False', 'children': []}; {'id': '18', 'type': 'block', 'children': ['19', '42', '56']}, {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '22', 'type': 'dictionary', 'children': ['23', '26', '29', '39']}, {'id': '23', 'type': 'pair', 'children': ['24', '25']}; {'id': '24', 'type': 'string', 'children': [], 'value': "'per_page'"}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'per_page'}; {'id': '26', 'type': 'pair', 'children': ['27', '28']}, {'id': '27', 'type': 'string', 'children': [], 'value': "'page'"}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'page'}, {'id': '29', 'type': 'pair', 'children': ['30', '31']}; {'id': '30', 'type': 'string', 'children': [], 'value': "'include_totals'"}, {'id': '31', 'type': 'call', 'children': ['32', '38']}; {'id': '32', 'type': 'attribute', 'children': ['33', '37']}, {'id': '33', 'type': 'call', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'str'}, {'id': '35', 'type': 'argument_list', 'children': ['36']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'include_totals'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'lower'}; {'id': '38', 'type': 'argument_list', 'children': []}, {'id': '39', 'type': 'pair', 'children': ['40', '41']}; {'id': '40', 'type': 'string', 'children': [], 'value': "'sort'"}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '42', 'type': 'expression_statement', 'children': ['43']}, {'id': '43', 'type': 'assignment', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'url'}, {'id': '45', 'type': 'call', 'children': ['46', '49']}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': '_url'}, {'id': '49', 'type': 'argument_list', 'children': ['50']}; {'id': '50', 'type': 'call', 'children': ['51', '54']}, {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'string', 'children': [], 'value': "'{}/logs'"}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '54', 'type': 'argument_list', 'children': ['55']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'user_id'}; {'id': '56', 'type': 'return_statement', 'children': ['57']}, {'id': '57', 'type': 'call', 'children': ['58', '63']}; {'id': '58', 'type': 'attribute', 'children': ['59', '62']}, {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'client'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '63', 'type': 'argument_list', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'url'}, {'id': '65', 'type': 'keyword_argument', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'params'} | def get_log_events(self, user_id, page=0, per_page=50, sort=None,
include_totals=False):
params = {
'per_page': per_page,
'page': page,
'include_totals': str(include_totals).lower(),
'sort': sort
}
url = self._url('{}/logs'.format(user_id))
return self.client.get(url, params=params) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '14']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_activities'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'before'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'after'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'limit'}, {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'block', 'children': ['15', '27', '39', '51', '67']}, {'id': '15', 'type': 'if_statement', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'before'}, {'id': '17', 'type': 'block', 'children': ['18']}; {'id': '18', 'type': 'expression_statement', 'children': ['19']}, {'id': '19', 'type': 'assignment', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'before'}, {'id': '21', 'type': 'call', 'children': ['22', '25']}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': '_utc_datetime_to_epoch'}, {'id': '25', 'type': 'argument_list', 'children': ['26']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'before'}, {'id': '27', 'type': 'if_statement', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'after'}, {'id': '29', 'type': 'block', 'children': ['30']}; {'id': '30', 'type': 'expression_statement', 'children': ['31']}, {'id': '31', 'type': 'assignment', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'after'}, {'id': '33', 'type': 'call', 'children': ['34', '37']}; {'id': '34', 'type': 'attribute', 'children': ['35', '36']}, {'id': '35', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '36', 'type': 'identifier', 'children': [], 'value': '_utc_datetime_to_epoch'}, {'id': '37', 'type': 'argument_list', 'children': ['38']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'after'}, {'id': '39', 'type': 'expression_statement', 'children': ['40']}; {'id': '40', 'type': 'assignment', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '42', 'type': 'call', 'children': ['43', '44']}, {'id': '43', 'type': 'identifier', 'children': [], 'value': 'dict'}; {'id': '44', 'type': 'argument_list', 'children': ['45', '48']}, {'id': '45', 'type': 'keyword_argument', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'before'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'before'}; {'id': '48', 'type': 'keyword_argument', 'children': ['49', '50']}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'after'}; {'id': '50', 'type': 'identifier', 'children': [], 'value': 'after'}, {'id': '51', 'type': 'expression_statement', 'children': ['52']}; {'id': '52', 'type': 'assignment', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'result_fetcher'}; {'id': '54', 'type': 'call', 'children': ['55', '58']}, {'id': '55', 'type': 'attribute', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'functools'}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'partial'}; {'id': '58', 'type': 'argument_list', 'children': ['59', '64', '65']}, {'id': '59', 'type': 'attribute', 'children': ['60', '63']}; {'id': '60', 'type': 'attribute', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'protocol'}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '64', 'type': 'string', 'children': [], 'value': "'/athlete/activities'"}, {'id': '65', 'type': 'dictionary_splat', 'children': ['66']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '67', 'type': 'return_statement', 'children': ['68']}; {'id': '68', 'type': 'call', 'children': ['69', '70']}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'BatchedResultsIterator'}; {'id': '70', 'type': 'argument_list', 'children': ['71', '76', '79', '82']}, {'id': '71', 'type': 'keyword_argument', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'entity'}, {'id': '73', 'type': 'attribute', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'model'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'Activity'}; {'id': '76', 'type': 'keyword_argument', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'bind_client'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '79', 'type': 'keyword_argument', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'result_fetcher'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'result_fetcher'}; {'id': '82', 'type': 'keyword_argument', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'limit'} | def get_activities(self, before=None, after=None, limit=None):
if before:
before = self._utc_datetime_to_epoch(before)
if after:
after = self._utc_datetime_to_epoch(after)
params = dict(before=before, after=after)
result_fetcher = functools.partial(self.protocol.get,
'/athlete/activities',
**params)
return BatchedResultsIterator(entity=model.Activity,
bind_client=self,
result_fetcher=result_fetcher,
limit=limit) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '33']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_segment_leaderboard'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12', '15', '18', '21', '24', '27', '30']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'segment_id'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'gender'}; {'id': '8', 'type': 'None', 'children': []}, {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'age_group'}, {'id': '11', 'type': 'None', 'children': []}; {'id': '12', 'type': 'default_parameter', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'weight_class'}; {'id': '14', 'type': 'None', 'children': []}, {'id': '15', 'type': 'default_parameter', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'following'}, {'id': '17', 'type': 'None', 'children': []}; {'id': '18', 'type': 'default_parameter', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'club_id'}; {'id': '20', 'type': 'None', 'children': []}, {'id': '21', 'type': 'default_parameter', 'children': ['22', '23']}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'timeframe'}, {'id': '23', 'type': 'None', 'children': []}; {'id': '24', 'type': 'default_parameter', 'children': ['25', '26']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'top_results_limit'}; {'id': '26', 'type': 'None', 'children': []}, {'id': '27', 'type': 'default_parameter', 'children': ['28', '29']}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'page'}, {'id': '29', 'type': 'None', 'children': []}; {'id': '30', 'type': 'default_parameter', 'children': ['31', '32']}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'context_entries'}; {'id': '32', 'type': 'None', 'children': []}, {'id': '33', 'type': 'block', 'children': ['34', '38', '70', '80', '108', '124', '152', '166', '177', '213', '224', '235', '246']}; {'id': '34', 'type': 'expression_statement', 'children': ['35']}, {'id': '35', 'type': 'assignment', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '37', 'type': 'dictionary', 'children': []}; {'id': '38', 'type': 'if_statement', 'children': ['39', '42']}, {'id': '39', 'type': 'comparison_operator', 'children': ['40', '41'], 'value': 'is'}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'gender'}, {'id': '41', 'type': 'None', 'children': []}; {'id': '42', 'type': 'block', 'children': ['43', '64']}, {'id': '43', 'type': 'if_statement', 'children': ['44', '53']}; {'id': '44', 'type': 'comparison_operator', 'children': ['45', '50'], 'value': 'not'}, {'id': '45', 'type': 'call', 'children': ['46', '49']}; {'id': '46', 'type': 'attribute', 'children': ['47', '48']}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'gender'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'upper'}, {'id': '49', 'type': 'argument_list', 'children': []}; {'id': '50', 'type': 'tuple', 'children': ['51', '52']}, {'id': '51', 'type': 'string', 'children': [], 'value': "'M'"}; {'id': '52', 'type': 'string', 'children': [], 'value': "'F'"}, {'id': '53', 'type': 'block', 'children': ['54']}; {'id': '54', 'type': 'raise_statement', 'children': ['55']}, {'id': '55', 'type': 'call', 'children': ['56', '57']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '57', 'type': 'argument_list', 'children': ['58']}; {'id': '58', 'type': 'call', 'children': ['59', '62']}, {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'string', 'children': [], 'value': '"Invalid gender: {0}. Possible values: \'M\' or \'F\'"'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '62', 'type': 'argument_list', 'children': ['63']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'gender'}; {'id': '64', 'type': 'expression_statement', 'children': ['65']}, {'id': '65', 'type': 'assignment', 'children': ['66', '69']}; {'id': '66', 'type': 'subscript', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '68', 'type': 'string', 'children': [], 'value': "'gender'"}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'gender'}; {'id': '70', 'type': 'expression_statement', 'children': ['71']}, {'id': '71', 'type': 'assignment', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'valid_age_groups'}, {'id': '73', 'type': 'tuple', 'children': ['74', '75', '76', '77', '78', '79']}; {'id': '74', 'type': 'string', 'children': [], 'value': "'0_24'"}, {'id': '75', 'type': 'string', 'children': [], 'value': "'25_34'"}; {'id': '76', 'type': 'string', 'children': [], 'value': "'35_44'"}, {'id': '77', 'type': 'string', 'children': [], 'value': "'45_54'"}; {'id': '78', 'type': 'string', 'children': [], 'value': "'55_64'"}, {'id': '79', 'type': 'string', 'children': [], 'value': "'65_plus'"}; {'id': '80', 'type': 'if_statement', 'children': ['81', '84']}, {'id': '81', 'type': 'comparison_operator', 'children': ['82', '83'], 'value': 'is'}; {'id': '82', 'type': 'identifier', 'children': [], 'value': 'age_group'}, {'id': '83', 'type': 'None', 'children': []}; {'id': '84', 'type': 'block', 'children': ['85', '102']}, {'id': '85', 'type': 'if_statement', 'children': ['86', '90']}; {'id': '86', 'type': 'not_operator', 'children': ['87']}, {'id': '87', 'type': 'comparison_operator', 'children': ['88', '89'], 'value': 'in'}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'age_group'}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'valid_age_groups'}; {'id': '90', 'type': 'block', 'children': ['91']}, {'id': '91', 'type': 'raise_statement', 'children': ['92']}; {'id': '92', 'type': 'call', 'children': ['93', '94']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '94', 'type': 'argument_list', 'children': ['95']}, {'id': '95', 'type': 'call', 'children': ['96', '99']}; {'id': '96', 'type': 'attribute', 'children': ['97', '98']}, {'id': '97', 'type': 'string', 'children': [], 'value': '"Invalid age group: {0}. Possible values: {1!r}"'}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '99', 'type': 'argument_list', 'children': ['100', '101']}; {'id': '100', 'type': 'identifier', 'children': [], 'value': 'age_group'}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'valid_age_groups'}; {'id': '102', 'type': 'expression_statement', 'children': ['103']}, {'id': '103', 'type': 'assignment', 'children': ['104', '107']}; {'id': '104', 'type': 'subscript', 'children': ['105', '106']}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '106', 'type': 'string', 'children': [], 'value': "'age_group'"}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'age_group'}; {'id': '108', 'type': 'expression_statement', 'children': ['109']}, {'id': '109', 'type': 'assignment', 'children': ['110', '111']}; {'id': '110', 'type': 'identifier', 'children': [], 'value': 'valid_weight_classes'}, {'id': '111', 'type': 'tuple', 'children': ['112', '113', '114', '115', '116', '117', '118', '119', '120', '121', '122', '123']}; {'id': '112', 'type': 'string', 'children': [], 'value': "'0_124'"}, {'id': '113', 'type': 'string', 'children': [], 'value': "'125_149'"}; {'id': '114', 'type': 'string', 'children': [], 'value': "'150_164'"}, {'id': '115', 'type': 'string', 'children': [], 'value': "'165_179'"}; {'id': '116', 'type': 'string', 'children': [], 'value': "'180_199'"}, {'id': '117', 'type': 'string', 'children': [], 'value': "'200_plus'"}; {'id': '118', 'type': 'string', 'children': [], 'value': "'0_54'"}, {'id': '119', 'type': 'string', 'children': [], 'value': "'55_64'"}; {'id': '120', 'type': 'string', 'children': [], 'value': "'65_74'"}, {'id': '121', 'type': 'string', 'children': [], 'value': "'75_84'"}; {'id': '122', 'type': 'string', 'children': [], 'value': "'85_94'"}, {'id': '123', 'type': 'string', 'children': [], 'value': "'95_plus'"}; {'id': '124', 'type': 'if_statement', 'children': ['125', '128']}, {'id': '125', 'type': 'comparison_operator', 'children': ['126', '127'], 'value': 'is'}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'weight_class'}, {'id': '127', 'type': 'None', 'children': []}; {'id': '128', 'type': 'block', 'children': ['129', '146']}, {'id': '129', 'type': 'if_statement', 'children': ['130', '134']}; {'id': '130', 'type': 'not_operator', 'children': ['131']}, {'id': '131', 'type': 'comparison_operator', 'children': ['132', '133'], 'value': 'in'}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'weight_class'}, {'id': '133', 'type': 'identifier', 'children': [], 'value': 'valid_weight_classes'}; {'id': '134', 'type': 'block', 'children': ['135']}, {'id': '135', 'type': 'raise_statement', 'children': ['136']}; {'id': '136', 'type': 'call', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'ValueError'}; {'id': '138', 'type': 'argument_list', 'children': ['139']}, {'id': '139', 'type': 'call', 'children': ['140', '143']}; {'id': '140', 'type': 'attribute', 'children': ['141', '142']}, {'id': '141', 'type': 'string', 'children': [], 'value': '"Invalid weight class: {0}. Possible values: {1!r}"'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'format'}, {'id': '143', 'type': 'argument_list', 'children': ['144', '145']}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'weight_class'}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'valid_weight_classes'}; {'id': '146', 'type': 'expression_statement', 'children': ['147']}, {'id': '147', 'type': 'assignment', 'children': ['148', '151']}; {'id': '148', 'type': 'subscript', 'children': ['149', '150']}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '150', 'type': 'string', 'children': [], 'value': "'weight_class'"}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'weight_class'}; {'id': '152', 'type': 'if_statement', 'children': ['153', '156']}, {'id': '153', 'type': 'comparison_operator', 'children': ['154', '155'], 'value': 'is'}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'following'}, {'id': '155', 'type': 'None', 'children': []}; {'id': '156', 'type': 'block', 'children': ['157']}, {'id': '157', 'type': 'expression_statement', 'children': ['158']}; {'id': '158', 'type': 'assignment', 'children': ['159', '162']}, {'id': '159', 'type': 'subscript', 'children': ['160', '161']}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '161', 'type': 'string', 'children': [], 'value': "'following'"}; {'id': '162', 'type': 'call', 'children': ['163', '164']}, {'id': '163', 'type': 'identifier', 'children': [], 'value': 'int'}; {'id': '164', 'type': 'argument_list', 'children': ['165']}, {'id': '165', 'type': 'identifier', 'children': [], 'value': 'following'}; {'id': '166', 'type': 'if_statement', 'children': ['167', '170']}, {'id': '167', 'type': 'comparison_operator', 'children': ['168', '169'], 'value': 'is'}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'club_id'}, {'id': '169', 'type': 'None', 'children': []}; {'id': '170', 'type': 'block', 'children': ['171']}, {'id': '171', 'type': 'expression_statement', 'children': ['172']}; {'id': '172', 'type': 'assignment', 'children': ['173', '176']}, {'id': '173', 'type': 'subscript', 'children': ['174', '175']}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '175', 'type': 'string', 'children': [], 'value': "'club_id'"}; {'id': '176', 'type': 'identifier', 'children': [], 'value': 'club_id'}, {'id': '177', 'type': 'if_statement', 'children': ['178', '181']}; {'id': '178', 'type': 'comparison_operator', 'children': ['179', '180'], 'value': 'is'}, {'id': '179', 'type': 'identifier', 'children': [], 'value': 'timeframe'}; {'id': '180', 'type': 'None', 'children': []}, {'id': '181', 'type': 'block', 'children': ['182', '190', '207']}; {'id': '182', 'type': 'expression_statement', 'children': ['183']}, {'id': '183', 'type': 'assignment', 'children': ['184', '185']}; {'id': '184', 'type': 'identifier', 'children': [], 'value': 'valid_timeframes'}, {'id': '185', 'type': 'expression_list', 'children': ['186', '187', '188', '189']}; {'id': '186', 'type': 'string', 'children': [], 'value': "'this_year'"}, {'id': '187', 'type': 'string', 'children': [], 'value': "'this_month'"}; {'id': '188', 'type': 'string', 'children': [], 'value': "'this_week'"}, {'id': '189', 'type': 'string', 'children': [], 'value': "'today'"}; {'id': '190', 'type': 'if_statement', 'children': ['191', '195']}, {'id': '191', 'type': 'not_operator', 'children': ['192']}; {'id': '192', 'type': 'comparison_operator', 'children': ['193', '194'], 'value': 'in'}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'timeframe'}; {'id': '194', 'type': 'identifier', 'children': [], 'value': 'valid_timeframes'}, {'id': '195', 'type': 'block', 'children': ['196']}; {'id': '196', 'type': 'raise_statement', 'children': ['197']}, {'id': '197', 'type': 'call', 'children': ['198', '199']}; {'id': '198', 'type': 'identifier', 'children': [], 'value': 'ValueError'}, {'id': '199', 'type': 'argument_list', 'children': ['200']}; {'id': '200', 'type': 'call', 'children': ['201', '204']}, {'id': '201', 'type': 'attribute', 'children': ['202', '203']}; {'id': '202', 'type': 'string', 'children': [], 'value': '"Invalid timeframe: {0}. Possible values: {1!r}"'}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'format'}; {'id': '204', 'type': 'argument_list', 'children': ['205', '206']}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'timeframe'}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'valid_timeframes'}, {'id': '207', 'type': 'expression_statement', 'children': ['208']}; {'id': '208', 'type': 'assignment', 'children': ['209', '212']}, {'id': '209', 'type': 'subscript', 'children': ['210', '211']}; {'id': '210', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '211', 'type': 'string', 'children': [], 'value': "'date_range'"}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'timeframe'}, {'id': '213', 'type': 'if_statement', 'children': ['214', '217']}; {'id': '214', 'type': 'comparison_operator', 'children': ['215', '216'], 'value': 'is'}, {'id': '215', 'type': 'identifier', 'children': [], 'value': 'top_results_limit'}; {'id': '216', 'type': 'None', 'children': []}, {'id': '217', 'type': 'block', 'children': ['218']}; {'id': '218', 'type': 'expression_statement', 'children': ['219']}, {'id': '219', 'type': 'assignment', 'children': ['220', '223']}; {'id': '220', 'type': 'subscript', 'children': ['221', '222']}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '222', 'type': 'string', 'children': [], 'value': "'per_page'"}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'top_results_limit'}; {'id': '224', 'type': 'if_statement', 'children': ['225', '228']}, {'id': '225', 'type': 'comparison_operator', 'children': ['226', '227'], 'value': 'is'}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'page'}, {'id': '227', 'type': 'None', 'children': []}; {'id': '228', 'type': 'block', 'children': ['229']}, {'id': '229', 'type': 'expression_statement', 'children': ['230']}; {'id': '230', 'type': 'assignment', 'children': ['231', '234']}, {'id': '231', 'type': 'subscript', 'children': ['232', '233']}; {'id': '232', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '233', 'type': 'string', 'children': [], 'value': "'page'"}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'page'}, {'id': '235', 'type': 'if_statement', 'children': ['236', '239']}; {'id': '236', 'type': 'comparison_operator', 'children': ['237', '238'], 'value': 'is'}, {'id': '237', 'type': 'identifier', 'children': [], 'value': 'context_entries'}; {'id': '238', 'type': 'None', 'children': []}, {'id': '239', 'type': 'block', 'children': ['240']}; {'id': '240', 'type': 'expression_statement', 'children': ['241']}, {'id': '241', 'type': 'assignment', 'children': ['242', '245']}; {'id': '242', 'type': 'subscript', 'children': ['243', '244']}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '244', 'type': 'string', 'children': [], 'value': "'context_entries'"}, {'id': '245', 'type': 'identifier', 'children': [], 'value': 'context_entries'}; {'id': '246', 'type': 'return_statement', 'children': ['247']}, {'id': '247', 'type': 'call', 'children': ['248', '253']}; {'id': '248', 'type': 'attribute', 'children': ['249', '252']}, {'id': '249', 'type': 'attribute', 'children': ['250', '251']}; {'id': '250', 'type': 'identifier', 'children': [], 'value': 'model'}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'SegmentLeaderboard'}; {'id': '252', 'type': 'identifier', 'children': [], 'value': 'deserialize'}, {'id': '253', 'type': 'argument_list', 'children': ['254', '267']}; {'id': '254', 'type': 'call', 'children': ['255', '260']}, {'id': '255', 'type': 'attribute', 'children': ['256', '259']}; {'id': '256', 'type': 'attribute', 'children': ['257', '258']}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '258', 'type': 'identifier', 'children': [], 'value': 'protocol'}, {'id': '259', 'type': 'identifier', 'children': [], 'value': 'get'}; {'id': '260', 'type': 'argument_list', 'children': ['261', '262', '265']}, {'id': '261', 'type': 'string', 'children': [], 'value': "'/segments/{id}/leaderboard'"}; {'id': '262', 'type': 'keyword_argument', 'children': ['263', '264']}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'id'}; {'id': '264', 'type': 'identifier', 'children': [], 'value': 'segment_id'}, {'id': '265', 'type': 'dictionary_splat', 'children': ['266']}; {'id': '266', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '267', 'type': 'keyword_argument', 'children': ['268', '269']}; {'id': '268', 'type': 'identifier', 'children': [], 'value': 'bind_client'}, {'id': '269', 'type': 'identifier', 'children': [], 'value': 'self'} | def get_segment_leaderboard(self, segment_id, gender=None, age_group=None, weight_class=None,
following=None, club_id=None, timeframe=None, top_results_limit=None,
page=None, context_entries = None):
params = {}
if gender is not None:
if gender.upper() not in ('M', 'F'):
raise ValueError("Invalid gender: {0}. Possible values: 'M' or 'F'".format(gender))
params['gender'] = gender
valid_age_groups = ('0_24', '25_34', '35_44', '45_54', '55_64', '65_plus')
if age_group is not None:
if not age_group in valid_age_groups:
raise ValueError("Invalid age group: {0}. Possible values: {1!r}".format(age_group, valid_age_groups))
params['age_group'] = age_group
valid_weight_classes = ('0_124', '125_149', '150_164', '165_179', '180_199', '200_plus',
'0_54', '55_64', '65_74', '75_84', '85_94', '95_plus')
if weight_class is not None:
if not weight_class in valid_weight_classes:
raise ValueError("Invalid weight class: {0}. Possible values: {1!r}".format(weight_class, valid_weight_classes))
params['weight_class'] = weight_class
if following is not None:
params['following'] = int(following)
if club_id is not None:
params['club_id'] = club_id
if timeframe is not None:
valid_timeframes = 'this_year', 'this_month', 'this_week', 'today'
if not timeframe in valid_timeframes:
raise ValueError("Invalid timeframe: {0}. Possible values: {1!r}".format(timeframe, valid_timeframes))
params['date_range'] = timeframe
if top_results_limit is not None:
params['per_page'] = top_results_limit
if page is not None:
params['page'] = page
if context_entries is not None:
params['context_entries'] = context_entries
return model.SegmentLeaderboard.deserialize(self.protocol.get('/segments/{id}/leaderboard',
id=segment_id,
**params),
bind_client=self) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '18']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'get_segment_efforts'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9', '12', '15']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'segment_id'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'athlete_id'}; {'id': '8', 'type': 'None', 'children': []}, {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'start_date_local'}, {'id': '11', 'type': 'None', 'children': []}; {'id': '12', 'type': 'default_parameter', 'children': ['13', '14']}, {'id': '13', 'type': 'identifier', 'children': [], 'value': 'end_date_local'}; {'id': '14', 'type': 'None', 'children': []}, {'id': '15', 'type': 'default_parameter', 'children': ['16', '17']}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'limit'}, {'id': '17', 'type': 'None', 'children': []}; {'id': '18', 'type': 'block', 'children': ['19', '26', '37', '71', '105', '116', '132']}, {'id': '19', 'type': 'expression_statement', 'children': ['20']}; {'id': '20', 'type': 'assignment', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '22', 'type': 'dictionary', 'children': ['23']}, {'id': '23', 'type': 'pair', 'children': ['24', '25']}; {'id': '24', 'type': 'string', 'children': [], 'value': '"segment_id"'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'segment_id'}; {'id': '26', 'type': 'if_statement', 'children': ['27', '30']}, {'id': '27', 'type': 'comparison_operator', 'children': ['28', '29'], 'value': 'is'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'athlete_id'}, {'id': '29', 'type': 'None', 'children': []}; {'id': '30', 'type': 'block', 'children': ['31']}, {'id': '31', 'type': 'expression_statement', 'children': ['32']}; {'id': '32', 'type': 'assignment', 'children': ['33', '36']}, {'id': '33', 'type': 'subscript', 'children': ['34', '35']}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'params'}, {'id': '35', 'type': 'string', 'children': [], 'value': "'athlete_id'"}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'athlete_id'}, {'id': '37', 'type': 'if_statement', 'children': ['38', '39']}; {'id': '38', 'type': 'identifier', 'children': [], 'value': 'start_date_local'}, {'id': '39', 'type': 'block', 'children': ['40', '60']}; {'id': '40', 'type': 'if_statement', 'children': ['41', '48']}, {'id': '41', 'type': 'call', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '43', 'type': 'argument_list', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'start_date_local'}, {'id': '45', 'type': 'attribute', 'children': ['46', '47']}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'six'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'string_types'}; {'id': '48', 'type': 'block', 'children': ['49']}, {'id': '49', 'type': 'expression_statement', 'children': ['50']}; {'id': '50', 'type': 'assignment', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'start_date_local'}; {'id': '52', 'type': 'attribute', 'children': ['53', '59']}, {'id': '53', 'type': 'call', 'children': ['54', '57']}; {'id': '54', 'type': 'attribute', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'arrow'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '57', 'type': 'argument_list', 'children': ['58']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'start_date_local'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'naive'}; {'id': '60', 'type': 'expression_statement', 'children': ['61']}, {'id': '61', 'type': 'assignment', 'children': ['62', '65']}; {'id': '62', 'type': 'subscript', 'children': ['63', '64']}, {'id': '63', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '64', 'type': 'string', 'children': [], 'value': '"start_date_local"'}, {'id': '65', 'type': 'call', 'children': ['66', '69']}; {'id': '66', 'type': 'attribute', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'start_date_local'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'strftime'}, {'id': '69', 'type': 'argument_list', 'children': ['70']}; {'id': '70', 'type': 'string', 'children': [], 'value': '"%Y-%m-%dT%H:%M:%SZ"'}, {'id': '71', 'type': 'if_statement', 'children': ['72', '73']}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'end_date_local'}, {'id': '73', 'type': 'block', 'children': ['74', '94']}; {'id': '74', 'type': 'if_statement', 'children': ['75', '82']}, {'id': '75', 'type': 'call', 'children': ['76', '77']}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'isinstance'}, {'id': '77', 'type': 'argument_list', 'children': ['78', '79']}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'end_date_local'}, {'id': '79', 'type': 'attribute', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'six'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'string_types'}; {'id': '82', 'type': 'block', 'children': ['83']}, {'id': '83', 'type': 'expression_statement', 'children': ['84']}; {'id': '84', 'type': 'assignment', 'children': ['85', '86']}, {'id': '85', 'type': 'identifier', 'children': [], 'value': 'end_date_local'}; {'id': '86', 'type': 'attribute', 'children': ['87', '93']}, {'id': '87', 'type': 'call', 'children': ['88', '91']}; {'id': '88', 'type': 'attribute', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'arrow'}; {'id': '90', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '91', 'type': 'argument_list', 'children': ['92']}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'end_date_local'}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'naive'}; {'id': '94', 'type': 'expression_statement', 'children': ['95']}, {'id': '95', 'type': 'assignment', 'children': ['96', '99']}; {'id': '96', 'type': 'subscript', 'children': ['97', '98']}, {'id': '97', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '98', 'type': 'string', 'children': [], 'value': '"end_date_local"'}, {'id': '99', 'type': 'call', 'children': ['100', '103']}; {'id': '100', 'type': 'attribute', 'children': ['101', '102']}, {'id': '101', 'type': 'identifier', 'children': [], 'value': 'end_date_local'}; {'id': '102', 'type': 'identifier', 'children': [], 'value': 'strftime'}, {'id': '103', 'type': 'argument_list', 'children': ['104']}; {'id': '104', 'type': 'string', 'children': [], 'value': '"%Y-%m-%dT%H:%M:%SZ"'}, {'id': '105', 'type': 'if_statement', 'children': ['106', '109']}; {'id': '106', 'type': 'comparison_operator', 'children': ['107', '108'], 'value': 'is'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'limit'}; {'id': '108', 'type': 'None', 'children': []}, {'id': '109', 'type': 'block', 'children': ['110']}; {'id': '110', 'type': 'expression_statement', 'children': ['111']}, {'id': '111', 'type': 'assignment', 'children': ['112', '115']}; {'id': '112', 'type': 'subscript', 'children': ['113', '114']}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '114', 'type': 'string', 'children': [], 'value': '"limit"'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'limit'}; {'id': '116', 'type': 'expression_statement', 'children': ['117']}, {'id': '117', 'type': 'assignment', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'result_fetcher'}, {'id': '119', 'type': 'call', 'children': ['120', '123']}; {'id': '120', 'type': 'attribute', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'functools'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'partial'}, {'id': '123', 'type': 'argument_list', 'children': ['124', '129', '130']}; {'id': '124', 'type': 'attribute', 'children': ['125', '128']}, {'id': '125', 'type': 'attribute', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '127', 'type': 'identifier', 'children': [], 'value': 'protocol'}; {'id': '128', 'type': 'identifier', 'children': [], 'value': 'get'}, {'id': '129', 'type': 'string', 'children': [], 'value': "'/segments/{segment_id}/all_efforts'"}; {'id': '130', 'type': 'dictionary_splat', 'children': ['131']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': 'params'}; {'id': '132', 'type': 'return_statement', 'children': ['133']}, {'id': '133', 'type': 'call', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'BatchedResultsIterator'}, {'id': '135', 'type': 'argument_list', 'children': ['136', '141', '144', '147']}; {'id': '136', 'type': 'keyword_argument', 'children': ['137', '138']}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'entity'}; {'id': '138', 'type': 'attribute', 'children': ['139', '140']}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'model'}; {'id': '140', 'type': 'identifier', 'children': [], 'value': 'BaseEffort'}, {'id': '141', 'type': 'keyword_argument', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'bind_client'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '144', 'type': 'keyword_argument', 'children': ['145', '146']}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'result_fetcher'}; {'id': '146', 'type': 'identifier', 'children': [], 'value': 'result_fetcher'}, {'id': '147', 'type': 'keyword_argument', 'children': ['148', '149']}; {'id': '148', 'type': 'identifier', 'children': [], 'value': 'limit'}, {'id': '149', 'type': 'identifier', 'children': [], 'value': 'limit'} | def get_segment_efforts(self, segment_id, athlete_id=None,
start_date_local=None, end_date_local=None,
limit=None):
params = {"segment_id": segment_id}
if athlete_id is not None:
params['athlete_id'] = athlete_id
if start_date_local:
if isinstance(start_date_local, six.string_types):
start_date_local = arrow.get(start_date_local).naive
params["start_date_local"] = start_date_local.strftime("%Y-%m-%dT%H:%M:%SZ")
if end_date_local:
if isinstance(end_date_local, six.string_types):
end_date_local = arrow.get(end_date_local).naive
params["end_date_local"] = end_date_local.strftime("%Y-%m-%dT%H:%M:%SZ")
if limit is not None:
params["limit"] = limit
result_fetcher = functools.partial(self.protocol.get,
'/segments/{segment_id}/all_efforts',
**params)
return BatchedResultsIterator(entity=model.BaseEffort, bind_client=self,
result_fetcher=result_fetcher, limit=limit) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '16']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'range'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '7', '10', '13']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'low'}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'high'}, {'id': '7', 'type': 'default_parameter', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'with_scores'}, {'id': '9', 'type': 'False', 'children': []}; {'id': '10', 'type': 'default_parameter', 'children': ['11', '12']}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'desc'}; {'id': '12', 'type': 'False', 'children': []}, {'id': '13', 'type': 'default_parameter', 'children': ['14', '15']}; {'id': '14', 'type': 'identifier', 'children': [], 'value': 'reverse'}, {'id': '15', 'type': 'False', 'children': []}; {'id': '16', 'type': 'block', 'children': ['17']}, {'id': '17', 'type': 'if_statement', 'children': ['18', '19', '34']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'reverse'}, {'id': '19', 'type': 'block', 'children': ['20']}; {'id': '20', 'type': 'return_statement', 'children': ['21']}, {'id': '21', 'type': 'call', 'children': ['22', '27']}; {'id': '22', 'type': 'attribute', 'children': ['23', '26']}, {'id': '23', 'type': 'attribute', 'children': ['24', '25']}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'database'}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'zrevrange'}, {'id': '27', 'type': 'argument_list', 'children': ['28', '31', '32', '33']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'low'}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'high'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'with_scores'}; {'id': '34', 'type': 'else_clause', 'children': ['35']}, {'id': '35', 'type': 'block', 'children': ['36']}; {'id': '36', 'type': 'return_statement', 'children': ['37']}, {'id': '37', 'type': 'call', 'children': ['38', '43']}; {'id': '38', 'type': 'attribute', 'children': ['39', '42']}, {'id': '39', 'type': 'attribute', 'children': ['40', '41']}; {'id': '40', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'database'}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'zrange'}, {'id': '43', 'type': 'argument_list', 'children': ['44', '47', '48', '49', '50']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '47', 'type': 'identifier', 'children': [], 'value': 'low'}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'high'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'desc'} | def range(self, low, high, with_scores=False, desc=False, reverse=False):
if reverse:
return self.database.zrevrange(self.key, low, high, with_scores)
else:
return self.database.zrange(self.key, low, high, desc, with_scores) |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sfiles_to_event'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'sfile_list'}, {'id': '5', 'type': 'block', 'children': ['6', '10', '29', '43', '53', '59', '87', '92']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '9']}; {'id': '8', 'type': 'identifier', 'children': [], 'value': 'event_list'}, {'id': '9', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '10', 'type': 'expression_statement', 'children': ['11']}, {'id': '11', 'type': 'assignment', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'sort_list'}, {'id': '13', 'type': 'list_comprehension', 'children': ['14', '26']}; {'id': '14', 'type': 'tuple', 'children': ['15', '25']}, {'id': '15', 'type': 'attribute', 'children': ['16', '24']}; {'id': '16', 'type': 'subscript', 'children': ['17', '23']}, {'id': '17', 'type': 'attribute', 'children': ['18', '22']}; {'id': '18', 'type': 'call', 'children': ['19', '20']}, {'id': '19', 'type': 'identifier', 'children': [], 'value': 'readheader'}; {'id': '20', 'type': 'argument_list', 'children': ['21']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'sfile'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'origins'}, {'id': '23', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'time'}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'sfile'}; {'id': '26', 'type': 'for_in_clause', 'children': ['27', '28']}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'sfile'}; {'id': '28', 'type': 'identifier', 'children': [], 'value': 'sfile_list'}, {'id': '29', 'type': 'expression_statement', 'children': ['30']}; {'id': '30', 'type': 'call', 'children': ['31', '34']}, {'id': '31', 'type': 'attribute', 'children': ['32', '33']}; {'id': '32', 'type': 'identifier', 'children': [], 'value': 'sort_list'}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'sort'}; {'id': '34', 'type': 'argument_list', 'children': ['35']}, {'id': '35', 'type': 'keyword_argument', 'children': ['36', '37']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '37', 'type': 'lambda', 'children': ['38', '40']}; {'id': '38', 'type': 'lambda_parameters', 'children': ['39']}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'tup'}; {'id': '40', 'type': 'subscript', 'children': ['41', '42']}, {'id': '41', 'type': 'identifier', 'children': [], 'value': 'tup'}; {'id': '42', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '43', 'type': 'expression_statement', 'children': ['44']}; {'id': '44', 'type': 'assignment', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'sfile_list'}; {'id': '46', 'type': 'list_comprehension', 'children': ['47', '50']}, {'id': '47', 'type': 'subscript', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'sfile'}, {'id': '49', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '50', 'type': 'for_in_clause', 'children': ['51', '52']}, {'id': '51', 'type': 'identifier', 'children': [], 'value': 'sfile'}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'sort_list'}, {'id': '53', 'type': 'expression_statement', 'children': ['54']}; {'id': '54', 'type': 'assignment', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'catalog'}; {'id': '56', 'type': 'call', 'children': ['57', '58']}, {'id': '57', 'type': 'identifier', 'children': [], 'value': 'Catalog'}; {'id': '58', 'type': 'argument_list', 'children': []}, {'id': '59', 'type': 'for_statement', 'children': ['60', '63', '67']}; {'id': '60', 'type': 'pattern_list', 'children': ['61', '62']}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'sfile'}, {'id': '63', 'type': 'call', 'children': ['64', '65']}; {'id': '64', 'type': 'identifier', 'children': [], 'value': 'enumerate'}, {'id': '65', 'type': 'argument_list', 'children': ['66']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'sfile_list'}, {'id': '67', 'type': 'block', 'children': ['68', '77']}; {'id': '68', 'type': 'expression_statement', 'children': ['69']}, {'id': '69', 'type': 'call', 'children': ['70', '73']}; {'id': '70', 'type': 'attribute', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'event_list'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '73', 'type': 'argument_list', 'children': ['74']}; {'id': '74', 'type': 'tuple', 'children': ['75', '76']}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '76', 'type': 'identifier', 'children': [], 'value': 'sfile'}, {'id': '77', 'type': 'expression_statement', 'children': ['78']}; {'id': '78', 'type': 'call', 'children': ['79', '82']}, {'id': '79', 'type': 'attribute', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'catalog'}, {'id': '81', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '82', 'type': 'argument_list', 'children': ['83']}, {'id': '83', 'type': 'call', 'children': ['84', '85']}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'readheader'}, {'id': '85', 'type': 'argument_list', 'children': ['86']}; {'id': '86', 'type': 'identifier', 'children': [], 'value': 'sfile'}, {'id': '87', 'type': 'expression_statement', 'children': ['88']}; {'id': '88', 'type': 'call', 'children': ['89', '90']}, {'id': '89', 'type': 'identifier', 'children': [], 'value': 'write_event'}; {'id': '90', 'type': 'argument_list', 'children': ['91']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'catalog'}; {'id': '92', 'type': 'return_statement', 'children': ['93']}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'event_list'} | def sfiles_to_event(sfile_list):
event_list = []
sort_list = [(readheader(sfile).origins[0].time, sfile)
for sfile in sfile_list]
sort_list.sort(key=lambda tup: tup[0])
sfile_list = [sfile[1] for sfile in sort_list]
catalog = Catalog()
for i, sfile in enumerate(sfile_list):
event_list.append((i, sfile))
catalog.append(readheader(sfile))
write_event(catalog)
return event_list |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '24']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'call', 'children': ['8', '13']}; {'id': '8', 'type': 'attribute', 'children': ['9', '12']}, {'id': '9', 'type': 'attribute', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '11', 'type': 'identifier', 'children': [], 'value': 'families'}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'sort'}, {'id': '13', 'type': 'argument_list', 'children': ['14']}; {'id': '14', 'type': 'keyword_argument', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '16', 'type': 'lambda', 'children': ['17', '19']}, {'id': '17', 'type': 'lambda_parameters', 'children': ['18']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'x'}, {'id': '19', 'type': 'attribute', 'children': ['20', '23']}; {'id': '20', 'type': 'attribute', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '22', 'type': 'identifier', 'children': [], 'value': 'template'}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'name'}; {'id': '24', 'type': 'return_statement', 'children': ['25']}, {'id': '25', 'type': 'identifier', 'children': [], 'value': 'self'} | def sort(self):
self.families.sort(key=lambda x: x.template.name)
return self |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '12']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'decluster'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '6', '9']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'identifier', 'children': [], 'value': 'trig_int'}; {'id': '6', 'type': 'default_parameter', 'children': ['7', '8']}, {'id': '7', 'type': 'identifier', 'children': [], 'value': 'timing'}; {'id': '8', 'type': 'string', 'children': [], 'value': "'detect'"}, {'id': '9', 'type': 'default_parameter', 'children': ['10', '11']}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'metric'}, {'id': '11', 'type': 'string', 'children': [], 'value': "'avg_cor'"}; {'id': '12', 'type': 'block', 'children': ['13', '17', '32', '157', '172', '187', '210', '229', '233', '283', '299', '303', '354', '360']}, {'id': '13', 'type': 'expression_statement', 'children': ['14']}; {'id': '14', 'type': 'assignment', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'all_detections'}; {'id': '16', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '17', 'type': 'for_statement', 'children': ['18', '19', '22']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'fam'}, {'id': '19', 'type': 'attribute', 'children': ['20', '21']}; {'id': '20', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'families'}; {'id': '22', 'type': 'block', 'children': ['23']}, {'id': '23', 'type': 'expression_statement', 'children': ['24']}; {'id': '24', 'type': 'call', 'children': ['25', '28']}, {'id': '25', 'type': 'attribute', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'all_detections'}, {'id': '27', 'type': 'identifier', 'children': [], 'value': 'extend'}; {'id': '28', 'type': 'argument_list', 'children': ['29']}, {'id': '29', 'type': 'attribute', 'children': ['30', '31']}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'fam'}, {'id': '31', 'type': 'identifier', 'children': [], 'value': 'detections'}; {'id': '32', 'type': 'if_statement', 'children': ['33', '36', '86', '150']}, {'id': '33', 'type': 'comparison_operator', 'children': ['34', '35'], 'value': '=='}; {'id': '34', 'type': 'identifier', 'children': [], 'value': 'timing'}, {'id': '35', 'type': 'string', 'children': [], 'value': "'detect'"}; {'id': '36', 'type': 'block', 'children': ['37']}, {'id': '37', 'type': 'if_statement', 'children': ['38', '41', '60', '79']}; {'id': '38', 'type': 'comparison_operator', 'children': ['39', '40'], 'value': '=='}, {'id': '39', 'type': 'identifier', 'children': [], 'value': 'metric'}; {'id': '40', 'type': 'string', 'children': [], 'value': "'avg_cor'"}, {'id': '41', 'type': 'block', 'children': ['42']}; {'id': '42', 'type': 'expression_statement', 'children': ['43']}, {'id': '43', 'type': 'assignment', 'children': ['44', '45']}; {'id': '44', 'type': 'identifier', 'children': [], 'value': 'detect_info'}, {'id': '45', 'type': 'list_comprehension', 'children': ['46', '57']}; {'id': '46', 'type': 'tuple', 'children': ['47', '50']}, {'id': '47', 'type': 'attribute', 'children': ['48', '49']}; {'id': '48', 'type': 'identifier', 'children': [], 'value': 'd'}, {'id': '49', 'type': 'identifier', 'children': [], 'value': 'detect_time'}; {'id': '50', 'type': 'binary_operator', 'children': ['51', '54'], 'value': '/'}, {'id': '51', 'type': 'attribute', 'children': ['52', '53']}; {'id': '52', 'type': 'identifier', 'children': [], 'value': 'd'}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'detect_val'}; {'id': '54', 'type': 'attribute', 'children': ['55', '56']}, {'id': '55', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'no_chans'}, {'id': '57', 'type': 'for_in_clause', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'd'}, {'id': '59', 'type': 'identifier', 'children': [], 'value': 'all_detections'}; {'id': '60', 'type': 'elif_clause', 'children': ['61', '64']}, {'id': '61', 'type': 'comparison_operator', 'children': ['62', '63'], 'value': '=='}; {'id': '62', 'type': 'identifier', 'children': [], 'value': 'metric'}, {'id': '63', 'type': 'string', 'children': [], 'value': "'cor_sum'"}; {'id': '64', 'type': 'block', 'children': ['65']}, {'id': '65', 'type': 'expression_statement', 'children': ['66']}; {'id': '66', 'type': 'assignment', 'children': ['67', '68']}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'detect_info'}; {'id': '68', 'type': 'list_comprehension', 'children': ['69', '76']}, {'id': '69', 'type': 'tuple', 'children': ['70', '73']}; {'id': '70', 'type': 'attribute', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '72', 'type': 'identifier', 'children': [], 'value': 'detect_time'}, {'id': '73', 'type': 'attribute', 'children': ['74', '75']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'd'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'detect_val'}; {'id': '76', 'type': 'for_in_clause', 'children': ['77', '78']}, {'id': '77', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '78', 'type': 'identifier', 'children': [], 'value': 'all_detections'}, {'id': '79', 'type': 'else_clause', 'children': ['80']}; {'id': '80', 'type': 'block', 'children': ['81']}, {'id': '81', 'type': 'raise_statement', 'children': ['82']}; {'id': '82', 'type': 'call', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'MatchFilterError'}; {'id': '84', 'type': 'argument_list', 'children': ['85']}, {'id': '85', 'type': 'string', 'children': [], 'value': "'metric is not cor_sum or avg_cor'"}; {'id': '86', 'type': 'elif_clause', 'children': ['87', '90']}, {'id': '87', 'type': 'comparison_operator', 'children': ['88', '89'], 'value': '=='}; {'id': '88', 'type': 'identifier', 'children': [], 'value': 'timing'}, {'id': '89', 'type': 'string', 'children': [], 'value': "'origin'"}; {'id': '90', 'type': 'block', 'children': ['91']}, {'id': '91', 'type': 'if_statement', 'children': ['92', '95', '119', '143']}; {'id': '92', 'type': 'comparison_operator', 'children': ['93', '94'], 'value': '=='}, {'id': '93', 'type': 'identifier', 'children': [], 'value': 'metric'}; {'id': '94', 'type': 'string', 'children': [], 'value': "'avg_cor'"}, {'id': '95', 'type': 'block', 'children': ['96']}; {'id': '96', 'type': 'expression_statement', 'children': ['97']}, {'id': '97', 'type': 'assignment', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'detect_info'}, {'id': '99', 'type': 'list_comprehension', 'children': ['100', '116']}; {'id': '100', 'type': 'tuple', 'children': ['101', '109']}, {'id': '101', 'type': 'attribute', 'children': ['102', '108']}; {'id': '102', 'type': 'call', 'children': ['103', '104']}, {'id': '103', 'type': 'identifier', 'children': [], 'value': '_get_origin'}; {'id': '104', 'type': 'argument_list', 'children': ['105']}, {'id': '105', 'type': 'attribute', 'children': ['106', '107']}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'd'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '108', 'type': 'identifier', 'children': [], 'value': 'time'}, {'id': '109', 'type': 'binary_operator', 'children': ['110', '113'], 'value': '/'}; {'id': '110', 'type': 'attribute', 'children': ['111', '112']}, {'id': '111', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'detect_val'}, {'id': '113', 'type': 'attribute', 'children': ['114', '115']}; {'id': '114', 'type': 'identifier', 'children': [], 'value': 'd'}, {'id': '115', 'type': 'identifier', 'children': [], 'value': 'no_chans'}; {'id': '116', 'type': 'for_in_clause', 'children': ['117', '118']}, {'id': '117', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'all_detections'}, {'id': '119', 'type': 'elif_clause', 'children': ['120', '123']}; {'id': '120', 'type': 'comparison_operator', 'children': ['121', '122'], 'value': '=='}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'metric'}; {'id': '122', 'type': 'string', 'children': [], 'value': "'cor_sum'"}, {'id': '123', 'type': 'block', 'children': ['124']}; {'id': '124', 'type': 'expression_statement', 'children': ['125']}, {'id': '125', 'type': 'assignment', 'children': ['126', '127']}; {'id': '126', 'type': 'identifier', 'children': [], 'value': 'detect_info'}, {'id': '127', 'type': 'list_comprehension', 'children': ['128', '140']}; {'id': '128', 'type': 'tuple', 'children': ['129', '137']}, {'id': '129', 'type': 'attribute', 'children': ['130', '136']}; {'id': '130', 'type': 'call', 'children': ['131', '132']}, {'id': '131', 'type': 'identifier', 'children': [], 'value': '_get_origin'}; {'id': '132', 'type': 'argument_list', 'children': ['133']}, {'id': '133', 'type': 'attribute', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'd'}, {'id': '135', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'time'}, {'id': '137', 'type': 'attribute', 'children': ['138', '139']}; {'id': '138', 'type': 'identifier', 'children': [], 'value': 'd'}, {'id': '139', 'type': 'identifier', 'children': [], 'value': 'detect_val'}; {'id': '140', 'type': 'for_in_clause', 'children': ['141', '142']}, {'id': '141', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'all_detections'}, {'id': '143', 'type': 'else_clause', 'children': ['144']}; {'id': '144', 'type': 'block', 'children': ['145']}, {'id': '145', 'type': 'raise_statement', 'children': ['146']}; {'id': '146', 'type': 'call', 'children': ['147', '148']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'MatchFilterError'}; {'id': '148', 'type': 'argument_list', 'children': ['149']}, {'id': '149', 'type': 'string', 'children': [], 'value': "'metric is not cor_sum or avg_cor'"}; {'id': '150', 'type': 'else_clause', 'children': ['151']}, {'id': '151', 'type': 'block', 'children': ['152']}; {'id': '152', 'type': 'raise_statement', 'children': ['153']}, {'id': '153', 'type': 'call', 'children': ['154', '155']}; {'id': '154', 'type': 'identifier', 'children': [], 'value': 'MatchFilterError'}, {'id': '155', 'type': 'argument_list', 'children': ['156']}; {'id': '156', 'type': 'string', 'children': [], 'value': "'timing is not detect or origin'"}, {'id': '157', 'type': 'expression_statement', 'children': ['158']}; {'id': '158', 'type': 'assignment', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'min_det'}; {'id': '160', 'type': 'subscript', 'children': ['161', '171']}, {'id': '161', 'type': 'call', 'children': ['162', '163']}; {'id': '162', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '163', 'type': 'argument_list', 'children': ['164']}; {'id': '164', 'type': 'list_comprehension', 'children': ['165', '168']}, {'id': '165', 'type': 'subscript', 'children': ['166', '167']}; {'id': '166', 'type': 'identifier', 'children': [], 'value': 'd'}, {'id': '167', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '168', 'type': 'for_in_clause', 'children': ['169', '170']}, {'id': '169', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'detect_info'}, {'id': '171', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '172', 'type': 'expression_statement', 'children': ['173']}, {'id': '173', 'type': 'assignment', 'children': ['174', '175']}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'detect_vals'}, {'id': '175', 'type': 'call', 'children': ['176', '179']}; {'id': '176', 'type': 'attribute', 'children': ['177', '178']}, {'id': '177', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '178', 'type': 'identifier', 'children': [], 'value': 'array'}, {'id': '179', 'type': 'argument_list', 'children': ['180']}; {'id': '180', 'type': 'list_comprehension', 'children': ['181', '184']}, {'id': '181', 'type': 'subscript', 'children': ['182', '183']}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'd'}, {'id': '183', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '184', 'type': 'for_in_clause', 'children': ['185', '186']}, {'id': '185', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'detect_info'}, {'id': '187', 'type': 'expression_statement', 'children': ['188']}; {'id': '188', 'type': 'assignment', 'children': ['189', '190']}, {'id': '189', 'type': 'identifier', 'children': [], 'value': 'detect_times'}; {'id': '190', 'type': 'call', 'children': ['191', '194']}, {'id': '191', 'type': 'attribute', 'children': ['192', '193']}; {'id': '192', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '193', 'type': 'identifier', 'children': [], 'value': 'array'}; {'id': '194', 'type': 'argument_list', 'children': ['195']}, {'id': '195', 'type': 'list_comprehension', 'children': ['196', '207']}; {'id': '196', 'type': 'call', 'children': ['197', '198']}, {'id': '197', 'type': 'identifier', 'children': [], 'value': '_total_microsec'}; {'id': '198', 'type': 'argument_list', 'children': ['199', '204']}, {'id': '199', 'type': 'attribute', 'children': ['200', '203']}; {'id': '200', 'type': 'subscript', 'children': ['201', '202']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '202', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'datetime'}; {'id': '204', 'type': 'attribute', 'children': ['205', '206']}, {'id': '205', 'type': 'identifier', 'children': [], 'value': 'min_det'}; {'id': '206', 'type': 'identifier', 'children': [], 'value': 'datetime'}, {'id': '207', 'type': 'for_in_clause', 'children': ['208', '209']}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'd'}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'detect_info'}; {'id': '210', 'type': 'expression_statement', 'children': ['211']}, {'id': '211', 'type': 'assignment', 'children': ['212', '213']}; {'id': '212', 'type': 'identifier', 'children': [], 'value': 'peaks_out'}, {'id': '213', 'type': 'call', 'children': ['214', '215']}; {'id': '214', 'type': 'identifier', 'children': [], 'value': 'decluster'}, {'id': '215', 'type': 'argument_list', 'children': ['216', '219', '222']}; {'id': '216', 'type': 'keyword_argument', 'children': ['217', '218']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'peaks'}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'detect_vals'}, {'id': '219', 'type': 'keyword_argument', 'children': ['220', '221']}; {'id': '220', 'type': 'identifier', 'children': [], 'value': 'index'}, {'id': '221', 'type': 'identifier', 'children': [], 'value': 'detect_times'}; {'id': '222', 'type': 'keyword_argument', 'children': ['223', '224']}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'trig_int'}; {'id': '224', 'type': 'binary_operator', 'children': ['225', '226'], 'value': '*'}, {'id': '225', 'type': 'identifier', 'children': [], 'value': 'trig_int'}; {'id': '226', 'type': 'binary_operator', 'children': ['227', '228'], 'value': '**'}, {'id': '227', 'type': 'integer', 'children': [], 'value': '10'}; {'id': '228', 'type': 'integer', 'children': [], 'value': '6'}, {'id': '229', 'type': 'expression_statement', 'children': ['230']}; {'id': '230', 'type': 'assignment', 'children': ['231', '232']}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'declustered_detections'}; {'id': '232', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '233', 'type': 'for_statement', 'children': ['234', '235', '236']}; {'id': '234', 'type': 'identifier', 'children': [], 'value': 'ind'}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'peaks_out'}; {'id': '236', 'type': 'block', 'children': ['237', '253', '274']}, {'id': '237', 'type': 'expression_statement', 'children': ['238']}; {'id': '238', 'type': 'assignment', 'children': ['239', '240']}, {'id': '239', 'type': 'identifier', 'children': [], 'value': 'matching_time_indeces'}; {'id': '240', 'type': 'subscript', 'children': ['241', '252']}, {'id': '241', 'type': 'call', 'children': ['242', '245']}; {'id': '242', 'type': 'attribute', 'children': ['243', '244']}, {'id': '243', 'type': 'identifier', 'children': [], 'value': 'np'}; {'id': '244', 'type': 'identifier', 'children': [], 'value': 'where'}, {'id': '245', 'type': 'argument_list', 'children': ['246']}; {'id': '246', 'type': 'comparison_operator', 'children': ['247', '248'], 'value': '=='}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'detect_times'}; {'id': '248', 'type': 'subscript', 'children': ['249', '250']}, {'id': '249', 'type': 'identifier', 'children': [], 'value': 'ind'}; {'id': '250', 'type': 'unary_operator', 'children': ['251'], 'value': '-'}, {'id': '251', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '252', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '253', 'type': 'expression_statement', 'children': ['254']}; {'id': '254', 'type': 'assignment', 'children': ['255', '256']}, {'id': '255', 'type': 'identifier', 'children': [], 'value': 'matches'}; {'id': '256', 'type': 'subscript', 'children': ['257', '258']}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'matching_time_indeces'}; {'id': '258', 'type': 'subscript', 'children': ['259', '273']}, {'id': '259', 'type': 'subscript', 'children': ['260', '272']}; {'id': '260', 'type': 'call', 'children': ['261', '264']}, {'id': '261', 'type': 'attribute', 'children': ['262', '263']}; {'id': '262', 'type': 'identifier', 'children': [], 'value': 'np'}, {'id': '263', 'type': 'identifier', 'children': [], 'value': 'where'}; {'id': '264', 'type': 'argument_list', 'children': ['265']}, {'id': '265', 'type': 'comparison_operator', 'children': ['266', '269'], 'value': '=='}; {'id': '266', 'type': 'subscript', 'children': ['267', '268']}, {'id': '267', 'type': 'identifier', 'children': [], 'value': 'detect_vals'}; {'id': '268', 'type': 'identifier', 'children': [], 'value': 'matching_time_indeces'}, {'id': '269', 'type': 'subscript', 'children': ['270', '271']}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'ind'}, {'id': '271', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '272', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '273', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '274', 'type': 'expression_statement', 'children': ['275']}, {'id': '275', 'type': 'call', 'children': ['276', '279']}; {'id': '276', 'type': 'attribute', 'children': ['277', '278']}, {'id': '277', 'type': 'identifier', 'children': [], 'value': 'declustered_detections'}; {'id': '278', 'type': 'identifier', 'children': [], 'value': 'append'}, {'id': '279', 'type': 'argument_list', 'children': ['280']}; {'id': '280', 'type': 'subscript', 'children': ['281', '282']}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'all_detections'}; {'id': '282', 'type': 'identifier', 'children': [], 'value': 'matches'}, {'id': '283', 'type': 'expression_statement', 'children': ['284']}; {'id': '284', 'type': 'assignment', 'children': ['285', '286']}, {'id': '285', 'type': 'identifier', 'children': [], 'value': 'template_names'}; {'id': '286', 'type': 'call', 'children': ['287', '288']}, {'id': '287', 'type': 'identifier', 'children': [], 'value': 'list'}; {'id': '288', 'type': 'argument_list', 'children': ['289']}, {'id': '289', 'type': 'call', 'children': ['290', '291']}; {'id': '290', 'type': 'identifier', 'children': [], 'value': 'set'}, {'id': '291', 'type': 'argument_list', 'children': ['292']}; {'id': '292', 'type': 'list_comprehension', 'children': ['293', '296']}, {'id': '293', 'type': 'attribute', 'children': ['294', '295']}; {'id': '294', 'type': 'identifier', 'children': [], 'value': 'd'}, {'id': '295', 'type': 'identifier', 'children': [], 'value': 'template_name'}; {'id': '296', 'type': 'for_in_clause', 'children': ['297', '298']}, {'id': '297', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '298', 'type': 'identifier', 'children': [], 'value': 'declustered_detections'}, {'id': '299', 'type': 'expression_statement', 'children': ['300']}; {'id': '300', 'type': 'assignment', 'children': ['301', '302']}, {'id': '301', 'type': 'identifier', 'children': [], 'value': 'new_families'}; {'id': '302', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '303', 'type': 'for_statement', 'children': ['304', '305', '306']}; {'id': '304', 'type': 'identifier', 'children': [], 'value': 'template_name'}, {'id': '305', 'type': 'identifier', 'children': [], 'value': 'template_names'}; {'id': '306', 'type': 'block', 'children': ['307', '329']}, {'id': '307', 'type': 'expression_statement', 'children': ['308']}; {'id': '308', 'type': 'assignment', 'children': ['309', '310']}, {'id': '309', 'type': 'identifier', 'children': [], 'value': 'template'}; {'id': '310', 'type': 'subscript', 'children': ['311', '328']}, {'id': '311', 'type': 'list_comprehension', 'children': ['312', '315', '320']}; {'id': '312', 'type': 'attribute', 'children': ['313', '314']}, {'id': '313', 'type': 'identifier', 'children': [], 'value': 'fam'}; {'id': '314', 'type': 'identifier', 'children': [], 'value': 'template'}, {'id': '315', 'type': 'for_in_clause', 'children': ['316', '317']}; {'id': '316', 'type': 'identifier', 'children': [], 'value': 'fam'}, {'id': '317', 'type': 'attribute', 'children': ['318', '319']}; {'id': '318', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '319', 'type': 'identifier', 'children': [], 'value': 'families'}; {'id': '320', 'type': 'if_clause', 'children': ['321']}, {'id': '321', 'type': 'comparison_operator', 'children': ['322', '327'], 'value': '=='}; {'id': '322', 'type': 'attribute', 'children': ['323', '326']}, {'id': '323', 'type': 'attribute', 'children': ['324', '325']}; {'id': '324', 'type': 'identifier', 'children': [], 'value': 'fam'}, {'id': '325', 'type': 'identifier', 'children': [], 'value': 'template'}; {'id': '326', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '327', 'type': 'identifier', 'children': [], 'value': 'template_name'}; {'id': '328', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '329', 'type': 'expression_statement', 'children': ['330']}; {'id': '330', 'type': 'call', 'children': ['331', '334']}, {'id': '331', 'type': 'attribute', 'children': ['332', '333']}; {'id': '332', 'type': 'identifier', 'children': [], 'value': 'new_families'}, {'id': '333', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '334', 'type': 'argument_list', 'children': ['335']}, {'id': '335', 'type': 'call', 'children': ['336', '337']}; {'id': '336', 'type': 'identifier', 'children': [], 'value': 'Family'}, {'id': '337', 'type': 'argument_list', 'children': ['338', '341']}; {'id': '338', 'type': 'keyword_argument', 'children': ['339', '340']}, {'id': '339', 'type': 'identifier', 'children': [], 'value': 'template'}; {'id': '340', 'type': 'identifier', 'children': [], 'value': 'template'}, {'id': '341', 'type': 'keyword_argument', 'children': ['342', '343']}; {'id': '342', 'type': 'identifier', 'children': [], 'value': 'detections'}, {'id': '343', 'type': 'list_comprehension', 'children': ['344', '345', '348']}; {'id': '344', 'type': 'identifier', 'children': [], 'value': 'd'}, {'id': '345', 'type': 'for_in_clause', 'children': ['346', '347']}; {'id': '346', 'type': 'identifier', 'children': [], 'value': 'd'}, {'id': '347', 'type': 'identifier', 'children': [], 'value': 'declustered_detections'}; {'id': '348', 'type': 'if_clause', 'children': ['349']}, {'id': '349', 'type': 'comparison_operator', 'children': ['350', '353'], 'value': '=='}; {'id': '350', 'type': 'attribute', 'children': ['351', '352']}, {'id': '351', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '352', 'type': 'identifier', 'children': [], 'value': 'template_name'}, {'id': '353', 'type': 'identifier', 'children': [], 'value': 'template_name'}; {'id': '354', 'type': 'expression_statement', 'children': ['355']}, {'id': '355', 'type': 'assignment', 'children': ['356', '359']}; {'id': '356', 'type': 'attribute', 'children': ['357', '358']}, {'id': '357', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '358', 'type': 'identifier', 'children': [], 'value': 'families'}, {'id': '359', 'type': 'identifier', 'children': [], 'value': 'new_families'}; {'id': '360', 'type': 'return_statement', 'children': ['361']}, {'id': '361', 'type': 'identifier', 'children': [], 'value': 'self'} | def decluster(self, trig_int, timing='detect', metric='avg_cor'):
all_detections = []
for fam in self.families:
all_detections.extend(fam.detections)
if timing == 'detect':
if metric == 'avg_cor':
detect_info = [(d.detect_time, d.detect_val / d.no_chans)
for d in all_detections]
elif metric == 'cor_sum':
detect_info = [(d.detect_time, d.detect_val)
for d in all_detections]
else:
raise MatchFilterError('metric is not cor_sum or avg_cor')
elif timing == 'origin':
if metric == 'avg_cor':
detect_info = [(_get_origin(d.event).time,
d.detect_val / d.no_chans)
for d in all_detections]
elif metric == 'cor_sum':
detect_info = [(_get_origin(d.event).time, d.detect_val)
for d in all_detections]
else:
raise MatchFilterError('metric is not cor_sum or avg_cor')
else:
raise MatchFilterError('timing is not detect or origin')
min_det = sorted([d[0] for d in detect_info])[0]
detect_vals = np.array([d[1] for d in detect_info])
detect_times = np.array([
_total_microsec(d[0].datetime, min_det.datetime)
for d in detect_info])
peaks_out = decluster(
peaks=detect_vals, index=detect_times, trig_int=trig_int * 10 ** 6)
declustered_detections = []
for ind in peaks_out:
matching_time_indeces = np.where(detect_times == ind[-1])[0]
matches = matching_time_indeces[
np.where(detect_vals[matching_time_indeces] == ind[0])[0][0]]
declustered_detections.append(all_detections[matches])
template_names = list(set([d.template_name
for d in declustered_detections]))
new_families = []
for template_name in template_names:
template = [fam.template for fam in self.families
if fam.template.name == template_name][0]
new_families.append(Family(
template=template,
detections=[d for d in declustered_detections
if d.template_name == template_name]))
self.families = new_families
return self |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '25']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '11']}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'detections'}, {'id': '11', 'type': 'call', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '13', 'type': 'argument_list', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'detections'}, {'id': '17', 'type': 'keyword_argument', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '19', 'type': 'lambda', 'children': ['20', '22']}; {'id': '20', 'type': 'lambda_parameters', 'children': ['21']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'd'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'detect_time'}, {'id': '25', 'type': 'return_statement', 'children': ['26']} | def sort(self):
self.detections = sorted(self.detections, key=lambda d: d.detect_time)
return self |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '5']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'sort'}, {'id': '3', 'type': 'parameters', 'children': ['4']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'self'}, {'id': '5', 'type': 'block', 'children': ['6', '25']}; {'id': '6', 'type': 'expression_statement', 'children': ['7']}, {'id': '7', 'type': 'assignment', 'children': ['8', '11']}; {'id': '8', 'type': 'attribute', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '10', 'type': 'identifier', 'children': [], 'value': 'templates'}, {'id': '11', 'type': 'call', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'sorted'}, {'id': '13', 'type': 'argument_list', 'children': ['14', '17']}; {'id': '14', 'type': 'attribute', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'self'}; {'id': '16', 'type': 'identifier', 'children': [], 'value': 'templates'}, {'id': '17', 'type': 'keyword_argument', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'key'}, {'id': '19', 'type': 'lambda', 'children': ['20', '22']}; {'id': '20', 'type': 'lambda_parameters', 'children': ['21']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '22', 'type': 'attribute', 'children': ['23', '24']}, {'id': '23', 'type': 'identifier', 'children': [], 'value': 'x'}; {'id': '24', 'type': 'identifier', 'children': [], 'value': 'name'}, {'id': '25', 'type': 'return_statement', 'children': ['26']} | def sort(self):
self.templates = sorted(self.templates, key=lambda x: x.name)
return self |
{'id': '0', 'type': 'module', 'children': ['1']}, {'id': '1', 'type': 'function_definition', 'children': ['2', '3', '23']}; {'id': '2', 'type': 'function_name', 'children': [], 'value': 'filter_picks'}, {'id': '3', 'type': 'parameters', 'children': ['4', '5', '8', '11', '14', '17', '20']}; {'id': '4', 'type': 'identifier', 'children': [], 'value': 'catalog'}, {'id': '5', 'type': 'default_parameter', 'children': ['6', '7']}; {'id': '6', 'type': 'identifier', 'children': [], 'value': 'stations'}, {'id': '7', 'type': 'None', 'children': []}; {'id': '8', 'type': 'default_parameter', 'children': ['9', '10']}, {'id': '9', 'type': 'identifier', 'children': [], 'value': 'channels'}; {'id': '10', 'type': 'None', 'children': []}, {'id': '11', 'type': 'default_parameter', 'children': ['12', '13']}; {'id': '12', 'type': 'identifier', 'children': [], 'value': 'networks'}, {'id': '13', 'type': 'None', 'children': []}; {'id': '14', 'type': 'default_parameter', 'children': ['15', '16']}, {'id': '15', 'type': 'identifier', 'children': [], 'value': 'locations'}; {'id': '16', 'type': 'None', 'children': []}, {'id': '17', 'type': 'default_parameter', 'children': ['18', '19']}; {'id': '18', 'type': 'identifier', 'children': [], 'value': 'top_n_picks'}, {'id': '19', 'type': 'None', 'children': []}; {'id': '20', 'type': 'default_parameter', 'children': ['21', '22']}, {'id': '21', 'type': 'identifier', 'children': [], 'value': 'evaluation_mode'}; {'id': '22', 'type': 'string', 'children': [], 'value': "'all'"}, {'id': '23', 'type': 'block', 'children': ['24', '32', '70', '108', '146', '184', '252', '421', '427', '448']}; {'id': '24', 'type': 'expression_statement', 'children': ['25']}, {'id': '25', 'type': 'assignment', 'children': ['26', '27']}; {'id': '26', 'type': 'identifier', 'children': [], 'value': 'filtered_catalog'}, {'id': '27', 'type': 'call', 'children': ['28', '31']}; {'id': '28', 'type': 'attribute', 'children': ['29', '30']}, {'id': '29', 'type': 'identifier', 'children': [], 'value': 'catalog'}; {'id': '30', 'type': 'identifier', 'children': [], 'value': 'copy'}, {'id': '31', 'type': 'argument_list', 'children': []}; {'id': '32', 'type': 'if_statement', 'children': ['33', '34']}, {'id': '33', 'type': 'identifier', 'children': [], 'value': 'stations'}; {'id': '34', 'type': 'block', 'children': ['35']}, {'id': '35', 'type': 'for_statement', 'children': ['36', '37', '38']}; {'id': '36', 'type': 'identifier', 'children': [], 'value': 'event'}, {'id': '37', 'type': 'identifier', 'children': [], 'value': 'filtered_catalog'}; {'id': '38', 'type': 'block', 'children': ['39', '50']}, {'id': '39', 'type': 'if_statement', 'children': ['40', '48']}; {'id': '40', 'type': 'comparison_operator', 'children': ['41', '47'], 'value': '=='}, {'id': '41', 'type': 'call', 'children': ['42', '43']}; {'id': '42', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '43', 'type': 'argument_list', 'children': ['44']}; {'id': '44', 'type': 'attribute', 'children': ['45', '46']}, {'id': '45', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '46', 'type': 'identifier', 'children': [], 'value': 'picks'}, {'id': '47', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '48', 'type': 'block', 'children': ['49']}, {'id': '49', 'type': 'continue_statement', 'children': []}; {'id': '50', 'type': 'expression_statement', 'children': ['51']}, {'id': '51', 'type': 'assignment', 'children': ['52', '55']}; {'id': '52', 'type': 'attribute', 'children': ['53', '54']}, {'id': '53', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '54', 'type': 'identifier', 'children': [], 'value': 'picks'}, {'id': '55', 'type': 'list_comprehension', 'children': ['56', '57', '62']}; {'id': '56', 'type': 'identifier', 'children': [], 'value': 'pick'}, {'id': '57', 'type': 'for_in_clause', 'children': ['58', '59']}; {'id': '58', 'type': 'identifier', 'children': [], 'value': 'pick'}, {'id': '59', 'type': 'attribute', 'children': ['60', '61']}; {'id': '60', 'type': 'identifier', 'children': [], 'value': 'event'}, {'id': '61', 'type': 'identifier', 'children': [], 'value': 'picks'}; {'id': '62', 'type': 'if_clause', 'children': ['63']}, {'id': '63', 'type': 'comparison_operator', 'children': ['64', '69'], 'value': 'in'}; {'id': '64', 'type': 'attribute', 'children': ['65', '68']}, {'id': '65', 'type': 'attribute', 'children': ['66', '67']}; {'id': '66', 'type': 'identifier', 'children': [], 'value': 'pick'}, {'id': '67', 'type': 'identifier', 'children': [], 'value': 'waveform_id'}; {'id': '68', 'type': 'identifier', 'children': [], 'value': 'station_code'}, {'id': '69', 'type': 'identifier', 'children': [], 'value': 'stations'}; {'id': '70', 'type': 'if_statement', 'children': ['71', '72']}, {'id': '71', 'type': 'identifier', 'children': [], 'value': 'channels'}; {'id': '72', 'type': 'block', 'children': ['73']}, {'id': '73', 'type': 'for_statement', 'children': ['74', '75', '76']}; {'id': '74', 'type': 'identifier', 'children': [], 'value': 'event'}, {'id': '75', 'type': 'identifier', 'children': [], 'value': 'filtered_catalog'}; {'id': '76', 'type': 'block', 'children': ['77', '88']}, {'id': '77', 'type': 'if_statement', 'children': ['78', '86']}; {'id': '78', 'type': 'comparison_operator', 'children': ['79', '85'], 'value': '=='}, {'id': '79', 'type': 'call', 'children': ['80', '81']}; {'id': '80', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '81', 'type': 'argument_list', 'children': ['82']}; {'id': '82', 'type': 'attribute', 'children': ['83', '84']}, {'id': '83', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '84', 'type': 'identifier', 'children': [], 'value': 'picks'}, {'id': '85', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '86', 'type': 'block', 'children': ['87']}, {'id': '87', 'type': 'continue_statement', 'children': []}; {'id': '88', 'type': 'expression_statement', 'children': ['89']}, {'id': '89', 'type': 'assignment', 'children': ['90', '93']}; {'id': '90', 'type': 'attribute', 'children': ['91', '92']}, {'id': '91', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '92', 'type': 'identifier', 'children': [], 'value': 'picks'}, {'id': '93', 'type': 'list_comprehension', 'children': ['94', '95', '100']}; {'id': '94', 'type': 'identifier', 'children': [], 'value': 'pick'}, {'id': '95', 'type': 'for_in_clause', 'children': ['96', '97']}; {'id': '96', 'type': 'identifier', 'children': [], 'value': 'pick'}, {'id': '97', 'type': 'attribute', 'children': ['98', '99']}; {'id': '98', 'type': 'identifier', 'children': [], 'value': 'event'}, {'id': '99', 'type': 'identifier', 'children': [], 'value': 'picks'}; {'id': '100', 'type': 'if_clause', 'children': ['101']}, {'id': '101', 'type': 'comparison_operator', 'children': ['102', '107'], 'value': 'in'}; {'id': '102', 'type': 'attribute', 'children': ['103', '106']}, {'id': '103', 'type': 'attribute', 'children': ['104', '105']}; {'id': '104', 'type': 'identifier', 'children': [], 'value': 'pick'}, {'id': '105', 'type': 'identifier', 'children': [], 'value': 'waveform_id'}; {'id': '106', 'type': 'identifier', 'children': [], 'value': 'channel_code'}, {'id': '107', 'type': 'identifier', 'children': [], 'value': 'channels'}; {'id': '108', 'type': 'if_statement', 'children': ['109', '110']}, {'id': '109', 'type': 'identifier', 'children': [], 'value': 'networks'}; {'id': '110', 'type': 'block', 'children': ['111']}, {'id': '111', 'type': 'for_statement', 'children': ['112', '113', '114']}; {'id': '112', 'type': 'identifier', 'children': [], 'value': 'event'}, {'id': '113', 'type': 'identifier', 'children': [], 'value': 'filtered_catalog'}; {'id': '114', 'type': 'block', 'children': ['115', '126']}, {'id': '115', 'type': 'if_statement', 'children': ['116', '124']}; {'id': '116', 'type': 'comparison_operator', 'children': ['117', '123'], 'value': '=='}, {'id': '117', 'type': 'call', 'children': ['118', '119']}; {'id': '118', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '119', 'type': 'argument_list', 'children': ['120']}; {'id': '120', 'type': 'attribute', 'children': ['121', '122']}, {'id': '121', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '122', 'type': 'identifier', 'children': [], 'value': 'picks'}, {'id': '123', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '124', 'type': 'block', 'children': ['125']}, {'id': '125', 'type': 'continue_statement', 'children': []}; {'id': '126', 'type': 'expression_statement', 'children': ['127']}, {'id': '127', 'type': 'assignment', 'children': ['128', '131']}; {'id': '128', 'type': 'attribute', 'children': ['129', '130']}, {'id': '129', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '130', 'type': 'identifier', 'children': [], 'value': 'picks'}, {'id': '131', 'type': 'list_comprehension', 'children': ['132', '133', '138']}; {'id': '132', 'type': 'identifier', 'children': [], 'value': 'pick'}, {'id': '133', 'type': 'for_in_clause', 'children': ['134', '135']}; {'id': '134', 'type': 'identifier', 'children': [], 'value': 'pick'}, {'id': '135', 'type': 'attribute', 'children': ['136', '137']}; {'id': '136', 'type': 'identifier', 'children': [], 'value': 'event'}, {'id': '137', 'type': 'identifier', 'children': [], 'value': 'picks'}; {'id': '138', 'type': 'if_clause', 'children': ['139']}, {'id': '139', 'type': 'comparison_operator', 'children': ['140', '145'], 'value': 'in'}; {'id': '140', 'type': 'attribute', 'children': ['141', '144']}, {'id': '141', 'type': 'attribute', 'children': ['142', '143']}; {'id': '142', 'type': 'identifier', 'children': [], 'value': 'pick'}, {'id': '143', 'type': 'identifier', 'children': [], 'value': 'waveform_id'}; {'id': '144', 'type': 'identifier', 'children': [], 'value': 'network_code'}, {'id': '145', 'type': 'identifier', 'children': [], 'value': 'networks'}; {'id': '146', 'type': 'if_statement', 'children': ['147', '148']}, {'id': '147', 'type': 'identifier', 'children': [], 'value': 'locations'}; {'id': '148', 'type': 'block', 'children': ['149']}, {'id': '149', 'type': 'for_statement', 'children': ['150', '151', '152']}; {'id': '150', 'type': 'identifier', 'children': [], 'value': 'event'}, {'id': '151', 'type': 'identifier', 'children': [], 'value': 'filtered_catalog'}; {'id': '152', 'type': 'block', 'children': ['153', '164']}, {'id': '153', 'type': 'if_statement', 'children': ['154', '162']}; {'id': '154', 'type': 'comparison_operator', 'children': ['155', '161'], 'value': '=='}, {'id': '155', 'type': 'call', 'children': ['156', '157']}; {'id': '156', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '157', 'type': 'argument_list', 'children': ['158']}; {'id': '158', 'type': 'attribute', 'children': ['159', '160']}, {'id': '159', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '160', 'type': 'identifier', 'children': [], 'value': 'picks'}, {'id': '161', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '162', 'type': 'block', 'children': ['163']}, {'id': '163', 'type': 'continue_statement', 'children': []}; {'id': '164', 'type': 'expression_statement', 'children': ['165']}, {'id': '165', 'type': 'assignment', 'children': ['166', '169']}; {'id': '166', 'type': 'attribute', 'children': ['167', '168']}, {'id': '167', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '168', 'type': 'identifier', 'children': [], 'value': 'picks'}, {'id': '169', 'type': 'list_comprehension', 'children': ['170', '171', '176']}; {'id': '170', 'type': 'identifier', 'children': [], 'value': 'pick'}, {'id': '171', 'type': 'for_in_clause', 'children': ['172', '173']}; {'id': '172', 'type': 'identifier', 'children': [], 'value': 'pick'}, {'id': '173', 'type': 'attribute', 'children': ['174', '175']}; {'id': '174', 'type': 'identifier', 'children': [], 'value': 'event'}, {'id': '175', 'type': 'identifier', 'children': [], 'value': 'picks'}; {'id': '176', 'type': 'if_clause', 'children': ['177']}, {'id': '177', 'type': 'comparison_operator', 'children': ['178', '183'], 'value': 'in'}; {'id': '178', 'type': 'attribute', 'children': ['179', '182']}, {'id': '179', 'type': 'attribute', 'children': ['180', '181']}; {'id': '180', 'type': 'identifier', 'children': [], 'value': 'pick'}, {'id': '181', 'type': 'identifier', 'children': [], 'value': 'waveform_id'}; {'id': '182', 'type': 'identifier', 'children': [], 'value': 'location_code'}, {'id': '183', 'type': 'identifier', 'children': [], 'value': 'locations'}; {'id': '184', 'type': 'if_statement', 'children': ['185', '188', '211', '238']}, {'id': '185', 'type': 'comparison_operator', 'children': ['186', '187'], 'value': '=='}; {'id': '186', 'type': 'identifier', 'children': [], 'value': 'evaluation_mode'}, {'id': '187', 'type': 'string', 'children': [], 'value': "'manual'"}; {'id': '188', 'type': 'block', 'children': ['189']}, {'id': '189', 'type': 'for_statement', 'children': ['190', '191', '192']}; {'id': '190', 'type': 'identifier', 'children': [], 'value': 'event'}, {'id': '191', 'type': 'identifier', 'children': [], 'value': 'filtered_catalog'}; {'id': '192', 'type': 'block', 'children': ['193']}, {'id': '193', 'type': 'expression_statement', 'children': ['194']}; {'id': '194', 'type': 'assignment', 'children': ['195', '198']}, {'id': '195', 'type': 'attribute', 'children': ['196', '197']}; {'id': '196', 'type': 'identifier', 'children': [], 'value': 'event'}, {'id': '197', 'type': 'identifier', 'children': [], 'value': 'picks'}; {'id': '198', 'type': 'list_comprehension', 'children': ['199', '200', '205']}, {'id': '199', 'type': 'identifier', 'children': [], 'value': 'pick'}; {'id': '200', 'type': 'for_in_clause', 'children': ['201', '202']}, {'id': '201', 'type': 'identifier', 'children': [], 'value': 'pick'}; {'id': '202', 'type': 'attribute', 'children': ['203', '204']}, {'id': '203', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '204', 'type': 'identifier', 'children': [], 'value': 'picks'}, {'id': '205', 'type': 'if_clause', 'children': ['206']}; {'id': '206', 'type': 'comparison_operator', 'children': ['207', '210'], 'value': '=='}, {'id': '207', 'type': 'attribute', 'children': ['208', '209']}; {'id': '208', 'type': 'identifier', 'children': [], 'value': 'pick'}, {'id': '209', 'type': 'identifier', 'children': [], 'value': 'evaluation_mode'}; {'id': '210', 'type': 'string', 'children': [], 'value': "'manual'"}, {'id': '211', 'type': 'elif_clause', 'children': ['212', '215']}; {'id': '212', 'type': 'comparison_operator', 'children': ['213', '214'], 'value': '=='}, {'id': '213', 'type': 'identifier', 'children': [], 'value': 'evaluation_mode'}; {'id': '214', 'type': 'string', 'children': [], 'value': "'automatic'"}, {'id': '215', 'type': 'block', 'children': ['216']}; {'id': '216', 'type': 'for_statement', 'children': ['217', '218', '219']}, {'id': '217', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '218', 'type': 'identifier', 'children': [], 'value': 'filtered_catalog'}, {'id': '219', 'type': 'block', 'children': ['220']}; {'id': '220', 'type': 'expression_statement', 'children': ['221']}, {'id': '221', 'type': 'assignment', 'children': ['222', '225']}; {'id': '222', 'type': 'attribute', 'children': ['223', '224']}, {'id': '223', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '224', 'type': 'identifier', 'children': [], 'value': 'picks'}, {'id': '225', 'type': 'list_comprehension', 'children': ['226', '227', '232']}; {'id': '226', 'type': 'identifier', 'children': [], 'value': 'pick'}, {'id': '227', 'type': 'for_in_clause', 'children': ['228', '229']}; {'id': '228', 'type': 'identifier', 'children': [], 'value': 'pick'}, {'id': '229', 'type': 'attribute', 'children': ['230', '231']}; {'id': '230', 'type': 'identifier', 'children': [], 'value': 'event'}, {'id': '231', 'type': 'identifier', 'children': [], 'value': 'picks'}; {'id': '232', 'type': 'if_clause', 'children': ['233']}, {'id': '233', 'type': 'comparison_operator', 'children': ['234', '237'], 'value': '=='}; {'id': '234', 'type': 'attribute', 'children': ['235', '236']}, {'id': '235', 'type': 'identifier', 'children': [], 'value': 'pick'}; {'id': '236', 'type': 'identifier', 'children': [], 'value': 'evaluation_mode'}, {'id': '237', 'type': 'string', 'children': [], 'value': "'automatic'"}; {'id': '238', 'type': 'elif_clause', 'children': ['239', '242']}, {'id': '239', 'type': 'comparison_operator', 'children': ['240', '241'], 'value': '!='}; {'id': '240', 'type': 'identifier', 'children': [], 'value': 'evaluation_mode'}, {'id': '241', 'type': 'string', 'children': [], 'value': "'all'"}; {'id': '242', 'type': 'block', 'children': ['243']}, {'id': '243', 'type': 'expression_statement', 'children': ['244']}; {'id': '244', 'type': 'call', 'children': ['245', '248']}, {'id': '245', 'type': 'attribute', 'children': ['246', '247']}; {'id': '246', 'type': 'identifier', 'children': [], 'value': 'warnings'}, {'id': '247', 'type': 'identifier', 'children': [], 'value': 'warn'}; {'id': '248', 'type': 'argument_list', 'children': ['249']}, {'id': '249', 'type': 'binary_operator', 'children': ['250', '251'], 'value': '%'}; {'id': '250', 'type': 'string', 'children': [], 'value': "'Unrecognised evaluation_mode: %s, using all picks'"}, {'id': '251', 'type': 'identifier', 'children': [], 'value': 'evaluation_mode'}; {'id': '252', 'type': 'if_statement', 'children': ['253', '254']}, {'id': '253', 'type': 'identifier', 'children': [], 'value': 'top_n_picks'}; {'id': '254', 'type': 'block', 'children': ['255', '259', '283', '294', '298', '380']}, {'id': '255', 'type': 'expression_statement', 'children': ['256']}; {'id': '256', 'type': 'assignment', 'children': ['257', '258']}, {'id': '257', 'type': 'identifier', 'children': [], 'value': 'all_picks'}; {'id': '258', 'type': 'list', 'children': [], 'value': '[]'}, {'id': '259', 'type': 'for_statement', 'children': ['260', '261', '262']}; {'id': '260', 'type': 'identifier', 'children': [], 'value': 'event'}, {'id': '261', 'type': 'identifier', 'children': [], 'value': 'filtered_catalog'}; {'id': '262', 'type': 'block', 'children': ['263']}, {'id': '263', 'type': 'expression_statement', 'children': ['264']}; {'id': '264', 'type': 'augmented_assignment', 'children': ['265', '266'], 'value': '+='}, {'id': '265', 'type': 'identifier', 'children': [], 'value': 'all_picks'}; {'id': '266', 'type': 'list_comprehension', 'children': ['267', '278']}, {'id': '267', 'type': 'tuple', 'children': ['268', '273']}; {'id': '268', 'type': 'attribute', 'children': ['269', '272']}, {'id': '269', 'type': 'attribute', 'children': ['270', '271']}; {'id': '270', 'type': 'identifier', 'children': [], 'value': 'pick'}, {'id': '271', 'type': 'identifier', 'children': [], 'value': 'waveform_id'}; {'id': '272', 'type': 'identifier', 'children': [], 'value': 'station_code'}, {'id': '273', 'type': 'attribute', 'children': ['274', '277']}; {'id': '274', 'type': 'attribute', 'children': ['275', '276']}, {'id': '275', 'type': 'identifier', 'children': [], 'value': 'pick'}; {'id': '276', 'type': 'identifier', 'children': [], 'value': 'waveform_id'}, {'id': '277', 'type': 'identifier', 'children': [], 'value': 'channel_code'}; {'id': '278', 'type': 'for_in_clause', 'children': ['279', '280']}, {'id': '279', 'type': 'identifier', 'children': [], 'value': 'pick'}; {'id': '280', 'type': 'attribute', 'children': ['281', '282']}, {'id': '281', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '282', 'type': 'identifier', 'children': [], 'value': 'picks'}, {'id': '283', 'type': 'expression_statement', 'children': ['284']}; {'id': '284', 'type': 'assignment', 'children': ['285', '286']}, {'id': '285', 'type': 'identifier', 'children': [], 'value': 'counted'}; {'id': '286', 'type': 'call', 'children': ['287', '293']}, {'id': '287', 'type': 'attribute', 'children': ['288', '292']}; {'id': '288', 'type': 'call', 'children': ['289', '290']}, {'id': '289', 'type': 'identifier', 'children': [], 'value': 'Counter'}; {'id': '290', 'type': 'argument_list', 'children': ['291']}, {'id': '291', 'type': 'identifier', 'children': [], 'value': 'all_picks'}; {'id': '292', 'type': 'identifier', 'children': [], 'value': 'most_common'}, {'id': '293', 'type': 'argument_list', 'children': []}; {'id': '294', 'type': 'expression_statement', 'children': ['295']}, {'id': '295', 'type': 'assignment', 'children': ['296', '297']}; {'id': '296', 'type': 'identifier', 'children': [], 'value': 'all_picks'}, {'id': '297', 'type': 'list', 'children': [], 'value': '[]'}; {'id': '298', 'type': 'for_statement', 'children': ['299', '300', '308']}, {'id': '299', 'type': 'identifier', 'children': [], 'value': 'i'}; {'id': '300', 'type': 'call', 'children': ['301', '302']}, {'id': '301', 'type': 'identifier', 'children': [], 'value': 'range'}; {'id': '302', 'type': 'argument_list', 'children': ['303']}, {'id': '303', 'type': 'subscript', 'children': ['304', '307']}; {'id': '304', 'type': 'subscript', 'children': ['305', '306']}, {'id': '305', 'type': 'identifier', 'children': [], 'value': 'counted'}; {'id': '306', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '307', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '308', 'type': 'block', 'children': ['309', '331', '346', '362']}, {'id': '309', 'type': 'expression_statement', 'children': ['310']}; {'id': '310', 'type': 'assignment', 'children': ['311', '312']}, {'id': '311', 'type': 'identifier', 'children': [], 'value': 'highest'}; {'id': '312', 'type': 'list_comprehension', 'children': ['313', '316', '319']}, {'id': '313', 'type': 'subscript', 'children': ['314', '315']}; {'id': '314', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '315', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '316', 'type': 'for_in_clause', 'children': ['317', '318']}, {'id': '317', 'type': 'identifier', 'children': [], 'value': 'item'}; {'id': '318', 'type': 'identifier', 'children': [], 'value': 'counted'}, {'id': '319', 'type': 'if_clause', 'children': ['320']}; {'id': '320', 'type': 'comparison_operator', 'children': ['321', '324'], 'value': '>='}, {'id': '321', 'type': 'subscript', 'children': ['322', '323']}; {'id': '322', 'type': 'identifier', 'children': [], 'value': 'item'}, {'id': '323', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '324', 'type': 'binary_operator', 'children': ['325', '330'], 'value': '-'}, {'id': '325', 'type': 'subscript', 'children': ['326', '329']}; {'id': '326', 'type': 'subscript', 'children': ['327', '328']}, {'id': '327', 'type': 'identifier', 'children': [], 'value': 'counted'}; {'id': '328', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '329', 'type': 'integer', 'children': [], 'value': '1'}; {'id': '330', 'type': 'identifier', 'children': [], 'value': 'i'}, {'id': '331', 'type': 'expression_statement', 'children': ['332']}; {'id': '332', 'type': 'assignment', 'children': ['333', '334']}, {'id': '333', 'type': 'identifier', 'children': [], 'value': 'highest'}; {'id': '334', 'type': 'call', 'children': ['335', '336']}, {'id': '335', 'type': 'identifier', 'children': [], 'value': 'sorted'}; {'id': '336', 'type': 'argument_list', 'children': ['337', '338']}, {'id': '337', 'type': 'identifier', 'children': [], 'value': 'highest'}; {'id': '338', 'type': 'keyword_argument', 'children': ['339', '340']}, {'id': '339', 'type': 'identifier', 'children': [], 'value': 'key'}; {'id': '340', 'type': 'lambda', 'children': ['341', '343']}, {'id': '341', 'type': 'lambda_parameters', 'children': ['342']}; {'id': '342', 'type': 'identifier', 'children': [], 'value': 'tup'}, {'id': '343', 'type': 'subscript', 'children': ['344', '345']}; {'id': '344', 'type': 'identifier', 'children': [], 'value': 'tup'}, {'id': '345', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '346', 'type': 'for_statement', 'children': ['347', '348', '349']}, {'id': '347', 'type': 'identifier', 'children': [], 'value': 'stachan'}; {'id': '348', 'type': 'identifier', 'children': [], 'value': 'highest'}, {'id': '349', 'type': 'block', 'children': ['350']}; {'id': '350', 'type': 'if_statement', 'children': ['351', '354']}, {'id': '351', 'type': 'comparison_operator', 'children': ['352', '353'], 'value': 'not'}; {'id': '352', 'type': 'identifier', 'children': [], 'value': 'stachan'}, {'id': '353', 'type': 'identifier', 'children': [], 'value': 'all_picks'}; {'id': '354', 'type': 'block', 'children': ['355']}, {'id': '355', 'type': 'expression_statement', 'children': ['356']}; {'id': '356', 'type': 'call', 'children': ['357', '360']}, {'id': '357', 'type': 'attribute', 'children': ['358', '359']}; {'id': '358', 'type': 'identifier', 'children': [], 'value': 'all_picks'}, {'id': '359', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '360', 'type': 'argument_list', 'children': ['361']}, {'id': '361', 'type': 'identifier', 'children': [], 'value': 'stachan'}; {'id': '362', 'type': 'if_statement', 'children': ['363', '369']}, {'id': '363', 'type': 'comparison_operator', 'children': ['364', '368'], 'value': '>'}; {'id': '364', 'type': 'call', 'children': ['365', '366']}, {'id': '365', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '366', 'type': 'argument_list', 'children': ['367']}, {'id': '367', 'type': 'identifier', 'children': [], 'value': 'all_picks'}; {'id': '368', 'type': 'identifier', 'children': [], 'value': 'top_n_picks'}, {'id': '369', 'type': 'block', 'children': ['370', '379']}; {'id': '370', 'type': 'expression_statement', 'children': ['371']}, {'id': '371', 'type': 'assignment', 'children': ['372', '373']}; {'id': '372', 'type': 'identifier', 'children': [], 'value': 'all_picks'}, {'id': '373', 'type': 'subscript', 'children': ['374', '375']}; {'id': '374', 'type': 'identifier', 'children': [], 'value': 'all_picks'}, {'id': '375', 'type': 'slice', 'children': ['376', '377', '378']}; {'id': '376', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '377', 'type': 'colon', 'children': []}; {'id': '378', 'type': 'identifier', 'children': [], 'value': 'top_n_picks'}, {'id': '379', 'type': 'break_statement', 'children': []}; {'id': '380', 'type': 'for_statement', 'children': ['381', '382', '383']}, {'id': '381', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '382', 'type': 'identifier', 'children': [], 'value': 'filtered_catalog'}, {'id': '383', 'type': 'block', 'children': ['384', '395']}; {'id': '384', 'type': 'if_statement', 'children': ['385', '393']}, {'id': '385', 'type': 'comparison_operator', 'children': ['386', '392'], 'value': '=='}; {'id': '386', 'type': 'call', 'children': ['387', '388']}, {'id': '387', 'type': 'identifier', 'children': [], 'value': 'len'}; {'id': '388', 'type': 'argument_list', 'children': ['389']}, {'id': '389', 'type': 'attribute', 'children': ['390', '391']}; {'id': '390', 'type': 'identifier', 'children': [], 'value': 'event'}, {'id': '391', 'type': 'identifier', 'children': [], 'value': 'picks'}; {'id': '392', 'type': 'integer', 'children': [], 'value': '0'}, {'id': '393', 'type': 'block', 'children': ['394']}; {'id': '394', 'type': 'continue_statement', 'children': []}, {'id': '395', 'type': 'expression_statement', 'children': ['396']}; {'id': '396', 'type': 'assignment', 'children': ['397', '400']}, {'id': '397', 'type': 'attribute', 'children': ['398', '399']}; {'id': '398', 'type': 'identifier', 'children': [], 'value': 'event'}, {'id': '399', 'type': 'identifier', 'children': [], 'value': 'picks'}; {'id': '400', 'type': 'list_comprehension', 'children': ['401', '402', '407']}, {'id': '401', 'type': 'identifier', 'children': [], 'value': 'pick'}; {'id': '402', 'type': 'for_in_clause', 'children': ['403', '404']}, {'id': '403', 'type': 'identifier', 'children': [], 'value': 'pick'}; {'id': '404', 'type': 'attribute', 'children': ['405', '406']}, {'id': '405', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '406', 'type': 'identifier', 'children': [], 'value': 'picks'}, {'id': '407', 'type': 'if_clause', 'children': ['408']}; {'id': '408', 'type': 'comparison_operator', 'children': ['409', '420'], 'value': 'in'}, {'id': '409', 'type': 'tuple', 'children': ['410', '415']}; {'id': '410', 'type': 'attribute', 'children': ['411', '414']}, {'id': '411', 'type': 'attribute', 'children': ['412', '413']}; {'id': '412', 'type': 'identifier', 'children': [], 'value': 'pick'}, {'id': '413', 'type': 'identifier', 'children': [], 'value': 'waveform_id'}; {'id': '414', 'type': 'identifier', 'children': [], 'value': 'station_code'}, {'id': '415', 'type': 'attribute', 'children': ['416', '419']}; {'id': '416', 'type': 'attribute', 'children': ['417', '418']}, {'id': '417', 'type': 'identifier', 'children': [], 'value': 'pick'}; {'id': '418', 'type': 'identifier', 'children': [], 'value': 'waveform_id'}, {'id': '419', 'type': 'identifier', 'children': [], 'value': 'channel_code'}; {'id': '420', 'type': 'identifier', 'children': [], 'value': 'all_picks'}, {'id': '421', 'type': 'expression_statement', 'children': ['422']}; {'id': '422', 'type': 'assignment', 'children': ['423', '424']}, {'id': '423', 'type': 'identifier', 'children': [], 'value': 'tmp_catalog'}; {'id': '424', 'type': 'call', 'children': ['425', '426']}, {'id': '425', 'type': 'identifier', 'children': [], 'value': 'Catalog'}; {'id': '426', 'type': 'argument_list', 'children': []}, {'id': '427', 'type': 'for_statement', 'children': ['428', '429', '430']}; {'id': '428', 'type': 'identifier', 'children': [], 'value': 'event'}, {'id': '429', 'type': 'identifier', 'children': [], 'value': 'filtered_catalog'}; {'id': '430', 'type': 'block', 'children': ['431']}, {'id': '431', 'type': 'if_statement', 'children': ['432', '440']}; {'id': '432', 'type': 'comparison_operator', 'children': ['433', '439'], 'value': '>'}, {'id': '433', 'type': 'call', 'children': ['434', '435']}; {'id': '434', 'type': 'identifier', 'children': [], 'value': 'len'}, {'id': '435', 'type': 'argument_list', 'children': ['436']}; {'id': '436', 'type': 'attribute', 'children': ['437', '438']}, {'id': '437', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '438', 'type': 'identifier', 'children': [], 'value': 'picks'}, {'id': '439', 'type': 'integer', 'children': [], 'value': '0'}; {'id': '440', 'type': 'block', 'children': ['441']}, {'id': '441', 'type': 'expression_statement', 'children': ['442']}; {'id': '442', 'type': 'call', 'children': ['443', '446']}, {'id': '443', 'type': 'attribute', 'children': ['444', '445']}; {'id': '444', 'type': 'identifier', 'children': [], 'value': 'tmp_catalog'}, {'id': '445', 'type': 'identifier', 'children': [], 'value': 'append'}; {'id': '446', 'type': 'argument_list', 'children': ['447']}, {'id': '447', 'type': 'identifier', 'children': [], 'value': 'event'}; {'id': '448', 'type': 'return_statement', 'children': ['449']}, {'id': '449', 'type': 'identifier', 'children': [], 'value': 'tmp_catalog'} | def filter_picks(catalog, stations=None, channels=None, networks=None,
locations=None, top_n_picks=None, evaluation_mode='all'):
filtered_catalog = catalog.copy()
if stations:
for event in filtered_catalog:
if len(event.picks) == 0:
continue
event.picks = [pick for pick in event.picks
if pick.waveform_id.station_code in stations]
if channels:
for event in filtered_catalog:
if len(event.picks) == 0:
continue
event.picks = [pick for pick in event.picks
if pick.waveform_id.channel_code in channels]
if networks:
for event in filtered_catalog:
if len(event.picks) == 0:
continue
event.picks = [pick for pick in event.picks
if pick.waveform_id.network_code in networks]
if locations:
for event in filtered_catalog:
if len(event.picks) == 0:
continue
event.picks = [pick for pick in event.picks
if pick.waveform_id.location_code in locations]
if evaluation_mode == 'manual':
for event in filtered_catalog:
event.picks = [pick for pick in event.picks
if pick.evaluation_mode == 'manual']
elif evaluation_mode == 'automatic':
for event in filtered_catalog:
event.picks = [pick for pick in event.picks
if pick.evaluation_mode == 'automatic']
elif evaluation_mode != 'all':
warnings.warn('Unrecognised evaluation_mode: %s, using all picks' %
evaluation_mode)
if top_n_picks:
all_picks = []
for event in filtered_catalog:
all_picks += [(pick.waveform_id.station_code,
pick.waveform_id.channel_code)
for pick in event.picks]
counted = Counter(all_picks).most_common()
all_picks = []
for i in range(counted[0][1]):
highest = [item[0] for item in counted
if item[1] >= counted[0][1] - i]
highest = sorted(highest, key=lambda tup: tup[0])
for stachan in highest:
if stachan not in all_picks:
all_picks.append(stachan)
if len(all_picks) > top_n_picks:
all_picks = all_picks[0:top_n_picks]
break
for event in filtered_catalog:
if len(event.picks) == 0:
continue
event.picks = [pick for pick in event.picks
if (pick.waveform_id.station_code,
pick.waveform_id.channel_code) in all_picks]
tmp_catalog = Catalog()
for event in filtered_catalog:
if len(event.picks) > 0:
tmp_catalog.append(event)
return tmp_catalog |
Subsets and Splits