|
--- |
|
dataset_info: |
|
features: |
|
- name: A |
|
dtype: string |
|
- name: B |
|
dtype: string |
|
- name: SeqA |
|
dtype: string |
|
- name: SeqB |
|
dtype: string |
|
splits: |
|
- name: combined |
|
num_bytes: 4506410 |
|
num_examples: 6254 |
|
- name: combined_stringent |
|
num_bytes: 4131280 |
|
num_examples: 5858 |
|
- name: manual |
|
num_bytes: 2411342 |
|
num_examples: 2150 |
|
- name: manual_stringent |
|
num_bytes: 2197429 |
|
num_examples: 1970 |
|
- name: pdb |
|
num_bytes: 2116596 |
|
num_examples: 4140 |
|
- name: pdb_stringent |
|
num_bytes: 1943225 |
|
num_examples: 3904 |
|
download_size: 8538939 |
|
dataset_size: 17306282 |
|
configs: |
|
- config_name: default |
|
data_files: |
|
- split: combined |
|
path: data/combined-* |
|
- split: combined_stringent |
|
path: data/combined_stringent-* |
|
- split: manual |
|
path: data/manual-* |
|
- split: manual_stringent |
|
path: data/manual_stringent-* |
|
- split: pdb |
|
path: data/pdb-* |
|
- split: pdb_stringent |
|
path: data/pdb_stringent-* |
|
--- |
|
|
|
|
|
# Non-interacting protein pairs from NEGATOME2.0 |
|
|
|
[Website](https://mips.helmholtz-muenchen.de/proj/ppi/negatome/) |
|
|
|
[Paper](https://pmc.ncbi.nlm.nih.gov/articles/PMC3965096/) |
|
|
|
We map Uniprot ids with the [ID mapping tool](https://www.uniprot.org/id-mapping) and record entires in which both sequences are found. PFAM entires are ommitted. |
|
Each split corresponds to a section of the dataset, labeled the same as the image below: |
|
|
|
|
|
 |
|
|
|
|
|
Please cite their paper if you use this dataset in your work |
|
|
|
``` |
|
@article{Blohm2013, |
|
title = {Negatome 2.0: a database of non-interacting proteins derived by literature mining, manual annotation and protein structure analysis}, |
|
volume = {42}, |
|
ISSN = {1362-4962}, |
|
url = {http://dx.doi.org/10.1093/nar/gkt1079}, |
|
DOI = {10.1093/nar/gkt1079}, |
|
number = {D1}, |
|
journal = {Nucleic Acids Research}, |
|
publisher = {Oxford University Press (OUP)}, |
|
author = {Blohm, Philipp and Frishman, Goar and Smialowski, Pawel and Goebels, Florian and Wachinger, Benedikt and Ruepp, Andreas and Frishman, Dmitrij}, |
|
year = {2013}, |
|
month = nov, |
|
pages = {D396–D400} |
|
} |
|
``` |
|
|
