|
--- |
|
dataset_info: |
|
features: |
|
- name: seqs |
|
dtype: string |
|
- name: labels |
|
dtype: int64 |
|
splits: |
|
- name: train |
|
num_bytes: 72141633 |
|
num_examples: 154336 |
|
- name: valid |
|
num_bytes: 2367747 |
|
num_examples: 5000 |
|
- name: test |
|
num_bytes: 2284093 |
|
num_examples: 5000 |
|
download_size: 75804271 |
|
dataset_size: 76793473 |
|
configs: |
|
- config_name: default |
|
data_files: |
|
- split: train |
|
path: data/train-* |
|
- split: valid |
|
path: data/valid-* |
|
- split: test |
|
path: data/test-* |
|
--- |
|
|
|
Dataset of proteins that homodimerize (1) and randomly selected proteins from StringDB (0). Data splits are random, but the balance is roughly 90:10. The main assumption is that most proteins do not dimerize with themselves. |
|
|
|
Homodimers are selected from [here](https://seq2fun.dcmb.med.umich.edu/HomodimerDB/download.cgi) via the 80% identity clustering. |
|
|
|
``` |
|
@misc {SynthyraHomodimerBenchmark, |
|
author = { Hallee, L. and Bichara, D. and Gleghorn, J, P. }, |
|
title = { Synthyra Homodimer Benchmark }, |
|
year = 2024, |
|
url = { https://huggingface.co/datasets/Synthyra/homodimer_benchmark }, |
|
doi = { 10.57967/hf/3798 }, |
|
publisher = { Hugging Face } |
|
} |
|
``` |
|
|
