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# coding=utf-8
# Copyright 2020-present, AllenAI Authors, University of Illinois Urbana-Champaign,
# Intel Nervana Systems and the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Binarizers take a (real value) matrix as input and produce a binary (values in {0,1}) mask of the same shape.
"""
import torch
from torch import autograd
class ThresholdBinarizer(autograd.Function):
"""
Thresholdd binarizer.
Computes a binary mask M from a real value matrix S such that `M_{i,j} = 1` if and only if `S_{i,j} > \tau`
where `\tau` is a real value threshold.
Implementation is inspired from:
https://github.com/arunmallya/piggyback
Piggyback: Adapting a Single Network to Multiple Tasks by Learning to Mask Weights
Arun Mallya, Dillon Davis, Svetlana Lazebnik
"""
@staticmethod
def forward(ctx, inputs: torch.tensor, threshold: float, sigmoid: bool):
"""
Args:
inputs (`torch.FloatTensor`)
The input matrix from which the binarizer computes the binary mask.
threshold (`float`)
The threshold value (in R).
sigmoid (`bool`)
If set to ``True``, we apply the sigmoid function to the `inputs` matrix before comparing to `threshold`.
In this case, `threshold` should be a value between 0 and 1.
Returns:
mask (`torch.FloatTensor`)
Binary matrix of the same size as `inputs` acting as a mask (1 - the associated weight is
retained, 0 - the associated weight is pruned).
"""
nb_elems = inputs.numel()
nb_min = int(0.005 * nb_elems) + 1
if sigmoid:
mask = (torch.sigmoid(inputs) > threshold).type(inputs.type())
else:
mask = (inputs > threshold).type(inputs.type())
if mask.sum() < nb_min:
# We limit the pruning so that at least 0.5% (half a percent) of the weights are remaining
k_threshold = inputs.flatten().kthvalue(max(nb_elems - nb_min, 1)).values
mask = (inputs > k_threshold).type(inputs.type())
return mask
@staticmethod
def backward(ctx, gradOutput):
return gradOutput, None, None
class TopKBinarizer(autograd.Function):
"""
Top-k Binarizer.
Computes a binary mask M from a real value matrix S such that `M_{i,j} = 1` if and only if `S_{i,j}`
is among the k% highest values of S.
Implementation is inspired from:
https://github.com/allenai/hidden-networks
What's hidden in a randomly weighted neural network?
Vivek Ramanujan*, Mitchell Wortsman*, Aniruddha Kembhavi, Ali Farhadi, Mohammad Rastegari
"""
@staticmethod
def forward(ctx, inputs: torch.tensor, threshold: float):
"""
Args:
inputs (`torch.FloatTensor`)
The input matrix from which the binarizer computes the binary mask.
threshold (`float`)
The percentage of weights to keep (the rest is pruned).
`threshold` is a float between 0 and 1.
Returns:
mask (`torch.FloatTensor`)
Binary matrix of the same size as `inputs` acting as a mask (1 - the associated weight is
retained, 0 - the associated weight is pruned).
"""
# Get the subnetwork by sorting the inputs and using the top threshold %
mask = inputs.clone()
_, idx = inputs.flatten().sort(descending=True)
j = int(threshold * inputs.numel())
# flat_out and mask access the same memory.
flat_out = mask.flatten()
flat_out[idx[j:]] = 0
flat_out[idx[:j]] = 1
return mask
@staticmethod
def backward(ctx, gradOutput):
return gradOutput, None
class MagnitudeBinarizer(object):
"""
Magnitude Binarizer.
Computes a binary mask M from a real value matrix S such that `M_{i,j} = 1` if and only if `S_{i,j}`
is among the k% highest values of |S| (absolute value).
Implementation is inspired from https://github.com/NervanaSystems/distiller/blob/2291fdcc2ea642a98d4e20629acb5a9e2e04b4e6/distiller/pruning/automated_gradual_pruner.py#L24
"""
@staticmethod
def apply(inputs: torch.tensor, threshold: float):
"""
Args:
inputs (`torch.FloatTensor`)
The input matrix from which the binarizer computes the binary mask.
This input marix is typically the weight matrix.
threshold (`float`)
The percentage of weights to keep (the rest is pruned).
`threshold` is a float between 0 and 1.
Returns:
mask (`torch.FloatTensor`)
Binary matrix of the same size as `inputs` acting as a mask (1 - the associated weight is
retained, 0 - the associated weight is pruned).
"""
# Get the subnetwork by sorting the inputs and using the top threshold %
mask = inputs.clone()
_, idx = inputs.abs().flatten().sort(descending=True)
j = int(threshold * inputs.numel())
# flat_out and mask access the same memory.
flat_out = mask.flatten()
flat_out[idx[j:]] = 0
flat_out[idx[:j]] = 1
return mask
|
AdaMix/examples/research_projects/movement-pruning/emmental/modules/binarizer.py/0
|
{
"file_path": "AdaMix/examples/research_projects/movement-pruning/emmental/modules/binarizer.py",
"repo_id": "AdaMix",
"token_count": 2366
}
| 38 |
#! /usr/bin/env python3
# coding=utf-8
# Copyright (c) 2019 Uber Technologies, Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Example command with bag of words:
python run_pplm.py -B space --cond_text "The president" --length 100 --gamma 1.5 --num_iterations 3 --num_samples 10 --stepsize 0.01 --window_length 5 --kl_scale 0.01 --gm_scale 0.95
Example command with discriminator:
python run_pplm.py -D sentiment --class_label 3 --cond_text "The lake" --length 10 --gamma 1.0 --num_iterations 30 --num_samples 10 --stepsize 0.01 --kl_scale 0.01 --gm_scale 0.95
"""
import argparse
import json
from operator import add
from typing import List, Optional, Tuple, Union
import numpy as np
import torch
import torch.nn.functional as F
from tqdm import trange
from pplm_classification_head import ClassificationHead
from transformers import GPT2LMHeadModel, GPT2Tokenizer
from transformers.file_utils import cached_path
PPLM_BOW = 1
PPLM_DISCRIM = 2
PPLM_BOW_DISCRIM = 3
SMALL_CONST = 1e-15
BIG_CONST = 1e10
BAG_OF_WORDS_ARCHIVE_MAP = {
"legal": "https://s3.amazonaws.com/models.huggingface.co/bert/pplm/bow/legal.txt",
"military": "https://s3.amazonaws.com/models.huggingface.co/bert/pplm/bow/military.txt",
"politics": "https://s3.amazonaws.com/models.huggingface.co/bert/pplm/bow/politics.txt",
"religion": "https://s3.amazonaws.com/models.huggingface.co/bert/pplm/bow/religion.txt",
"science": "https://s3.amazonaws.com/models.huggingface.co/bert/pplm/bow/science.txt",
"space": "https://s3.amazonaws.com/models.huggingface.co/bert/pplm/bow/space.txt",
"technology": "https://s3.amazonaws.com/models.huggingface.co/bert/pplm/bow/technology.txt",
}
DISCRIMINATOR_MODELS_PARAMS = {
"clickbait": {
"url": "https://s3.amazonaws.com/models.huggingface.co/bert/pplm/discriminators/clickbait_classifier_head.pt",
"class_size": 2,
"embed_size": 1024,
"class_vocab": {"non_clickbait": 0, "clickbait": 1},
"default_class": 1,
"pretrained_model": "gpt2-medium",
},
"sentiment": {
"url": "https://s3.amazonaws.com/models.huggingface.co/bert/pplm/discriminators/SST_classifier_head.pt",
"class_size": 5,
"embed_size": 1024,
"class_vocab": {"very_positive": 2, "very_negative": 3},
"default_class": 3,
"pretrained_model": "gpt2-medium",
},
}
def top_k_filter(logits, k, probs=False):
"""
Masks everything but the k top entries as -infinity (1e10).
Used to mask logits such that e^-infinity -> 0 won't contribute to the
sum of the denominator.
"""
if k == 0:
return logits
else:
values = torch.topk(logits, k)[0]
batch_mins = values[:, -1].view(-1, 1).expand_as(logits)
if probs:
return torch.where(logits < batch_mins, torch.ones_like(logits) * 0.0, logits)
return torch.where(logits < batch_mins, torch.ones_like(logits) * -BIG_CONST, logits)
def perturb_past(
past,
model,
last,
unpert_past=None,
unpert_logits=None,
accumulated_hidden=None,
grad_norms=None,
stepsize=0.01,
one_hot_bows_vectors=None,
classifier=None,
class_label=None,
loss_type=0,
num_iterations=3,
horizon_length=1,
window_length=0,
decay=False,
gamma=1.5,
kl_scale=0.01,
device="cuda",
):
# Generate inital perturbed past
grad_accumulator = [(np.zeros(p.shape).astype("float32")) for p in past]
if accumulated_hidden is None:
accumulated_hidden = 0
if decay:
decay_mask = torch.arange(0.0, 1.0 + SMALL_CONST, 1.0 / (window_length))[1:]
else:
decay_mask = 1.0
# TODO fix this comment (SUMANTH)
# Generate a mask is gradient perturbated is based on a past window
_, _, _, curr_length, _ = past[0].shape
if curr_length > window_length and window_length > 0:
ones_key_val_shape = tuple(past[0].shape[:-2]) + tuple([window_length]) + tuple(past[0].shape[-1:])
zeros_key_val_shape = (
tuple(past[0].shape[:-2]) + tuple([curr_length - window_length]) + tuple(past[0].shape[-1:])
)
ones_mask = torch.ones(ones_key_val_shape)
ones_mask = decay_mask * ones_mask.permute(0, 1, 2, 4, 3)
ones_mask = ones_mask.permute(0, 1, 2, 4, 3)
window_mask = torch.cat((ones_mask, torch.zeros(zeros_key_val_shape)), dim=-2).to(device)
else:
window_mask = torch.ones_like(past[0]).to(device)
# accumulate perturbations for num_iterations
loss_per_iter = []
new_accumulated_hidden = None
for i in range(num_iterations):
print("Iteration ", i + 1)
curr_perturbation = [torch.from_numpy(p_).requires_grad_(True).to(device=device) for p_ in grad_accumulator]
# make sure p_.grad is not None
for p_ in curr_perturbation:
p_.retain_grad()
# Compute hidden using perturbed past
perturbed_past = list(map(add, past, curr_perturbation))
_, _, _, curr_length, _ = curr_perturbation[0].shape
lm_output = model(last, past_key_values=perturbed_past)
all_logits, all_hidden = lm_output["logits"], lm_output["hidden_states"]
hidden = all_hidden[-1]
new_accumulated_hidden = accumulated_hidden + torch.sum(hidden, dim=1).detach()
# TODO: Check the layer-norm consistency of this with trained discriminator (Sumanth)
logits = all_logits[:, -1, :]
probs = F.softmax(logits, dim=-1)
loss = 0.0
loss_list = []
if loss_type == PPLM_BOW or loss_type == PPLM_BOW_DISCRIM:
for one_hot_bow in one_hot_bows_vectors:
bow_logits = torch.mm(probs, torch.t(one_hot_bow))
bow_loss = -torch.log(torch.sum(bow_logits))
loss += bow_loss
loss_list.append(bow_loss)
print(" pplm_bow_loss:", loss.data.cpu().numpy())
if loss_type == 2 or loss_type == 3:
ce_loss = torch.nn.CrossEntropyLoss()
# TODO why we need to do this assignment and not just using unpert_past? (Sumanth)
curr_unpert_past = unpert_past
curr_probs = torch.unsqueeze(probs, dim=1)
wte = model.resize_token_embeddings()
for _ in range(horizon_length):
inputs_embeds = torch.matmul(curr_probs, wte.weight.data)
lm_output = model(past_key_values=curr_unpert_past, inputs_embeds=inputs_embeds)
curr_unpert_past, curr_all_hidden = lm_output["past_key_values"], lm_output["hidden_states"]
curr_hidden = curr_all_hidden[-1]
new_accumulated_hidden = new_accumulated_hidden + torch.sum(curr_hidden, dim=1)
prediction = classifier(new_accumulated_hidden / (curr_length + 1 + horizon_length))
label = torch.tensor(prediction.shape[0] * [class_label], device=device, dtype=torch.long)
discrim_loss = ce_loss(prediction, label)
print(" pplm_discrim_loss:", discrim_loss.data.cpu().numpy())
loss += discrim_loss
loss_list.append(discrim_loss)
kl_loss = 0.0
if kl_scale > 0.0:
unpert_probs = F.softmax(unpert_logits[:, -1, :], dim=-1)
unpert_probs = unpert_probs + SMALL_CONST * (unpert_probs <= SMALL_CONST).float().to(device).detach()
correction = SMALL_CONST * (probs <= SMALL_CONST).float().to(device).detach()
corrected_probs = probs + correction.detach()
kl_loss = kl_scale * ((corrected_probs * (corrected_probs / unpert_probs).log()).sum())
print(" kl_loss", kl_loss.data.cpu().numpy())
loss += kl_loss
loss_per_iter.append(loss.data.cpu().numpy())
print(" pplm_loss", (loss - kl_loss).data.cpu().numpy())
# compute gradients
loss.backward()
# calculate gradient norms
if grad_norms is not None and loss_type == PPLM_BOW:
grad_norms = [
torch.max(grad_norms[index], torch.norm(p_.grad * window_mask))
for index, p_ in enumerate(curr_perturbation)
]
else:
grad_norms = [
(torch.norm(p_.grad * window_mask) + SMALL_CONST) for index, p_ in enumerate(curr_perturbation)
]
# normalize gradients
grad = [
-stepsize * (p_.grad * window_mask / grad_norms[index] ** gamma).data.cpu().numpy()
for index, p_ in enumerate(curr_perturbation)
]
# accumulate gradient
grad_accumulator = list(map(add, grad, grad_accumulator))
# reset gradients, just to make sure
for p_ in curr_perturbation:
p_.grad.data.zero_()
# removing past from the graph
new_past = []
for p_ in past:
new_past.append(p_.detach())
past = new_past
# apply the accumulated perturbations to the past
grad_accumulator = [torch.from_numpy(p_).requires_grad_(True).to(device=device) for p_ in grad_accumulator]
pert_past = list(map(add, past, grad_accumulator))
return pert_past, new_accumulated_hidden, grad_norms, loss_per_iter
def get_classifier(
name: Optional[str], class_label: Union[str, int], device: str
) -> Tuple[Optional[ClassificationHead], Optional[int]]:
if name is None:
return None, None
params = DISCRIMINATOR_MODELS_PARAMS[name]
classifier = ClassificationHead(class_size=params["class_size"], embed_size=params["embed_size"]).to(device)
if "url" in params:
resolved_archive_file = cached_path(params["url"])
elif "path" in params:
resolved_archive_file = params["path"]
else:
raise ValueError("Either url or path have to be specified in the discriminator model parameters")
classifier.load_state_dict(torch.load(resolved_archive_file, map_location=device))
classifier.eval()
if isinstance(class_label, str):
if class_label in params["class_vocab"]:
label_id = params["class_vocab"][class_label]
else:
label_id = params["default_class"]
print("class_label {} not in class_vocab".format(class_label))
print("available values are: {}".format(params["class_vocab"]))
print("using default class {}".format(label_id))
elif isinstance(class_label, int):
if class_label in set(params["class_vocab"].values()):
label_id = class_label
else:
label_id = params["default_class"]
print("class_label {} not in class_vocab".format(class_label))
print("available values are: {}".format(params["class_vocab"]))
print("using default class {}".format(label_id))
else:
label_id = params["default_class"]
return classifier, label_id
def get_bag_of_words_indices(bag_of_words_ids_or_paths: List[str], tokenizer) -> List[List[List[int]]]:
bow_indices = []
for id_or_path in bag_of_words_ids_or_paths:
if id_or_path in BAG_OF_WORDS_ARCHIVE_MAP:
filepath = cached_path(BAG_OF_WORDS_ARCHIVE_MAP[id_or_path])
else:
filepath = id_or_path
with open(filepath, "r") as f:
words = f.read().strip().split("\n")
bow_indices.append([tokenizer.encode(word.strip(), add_prefix_space=True) for word in words])
return bow_indices
def build_bows_one_hot_vectors(bow_indices, tokenizer, device="cuda"):
if bow_indices is None:
return None
one_hot_bows_vectors = []
for single_bow in bow_indices:
single_bow = list(filter(lambda x: len(x) <= 1, single_bow))
single_bow = torch.tensor(single_bow).to(device)
num_words = single_bow.shape[0]
one_hot_bow = torch.zeros(num_words, tokenizer.vocab_size).to(device)
one_hot_bow.scatter_(1, single_bow, 1)
one_hot_bows_vectors.append(one_hot_bow)
return one_hot_bows_vectors
def full_text_generation(
model,
tokenizer,
context=None,
num_samples=1,
device="cuda",
bag_of_words=None,
discrim=None,
class_label=None,
length=100,
stepsize=0.02,
temperature=1.0,
top_k=10,
sample=False,
num_iterations=3,
grad_length=10000,
horizon_length=1,
window_length=0,
decay=False,
gamma=1.5,
gm_scale=0.9,
kl_scale=0.01,
repetition_penalty=1.0,
**kwargs
):
classifier, class_id = get_classifier(discrim, class_label, device)
bow_indices = []
if bag_of_words:
bow_indices = get_bag_of_words_indices(bag_of_words.split(";"), tokenizer)
if bag_of_words and classifier:
print("Both PPLM-BoW and PPLM-Discrim are on. This is not optimized.")
loss_type = PPLM_BOW_DISCRIM
elif bag_of_words:
loss_type = PPLM_BOW
print("Using PPLM-BoW")
elif classifier is not None:
loss_type = PPLM_DISCRIM
print("Using PPLM-Discrim")
else:
raise Exception("Specify either a bag of words or a discriminator")
unpert_gen_tok_text, _, _ = generate_text_pplm(
model=model,
tokenizer=tokenizer,
context=context,
device=device,
length=length,
sample=sample,
perturb=False,
repetition_penalty=repetition_penalty,
)
if device == "cuda":
torch.cuda.empty_cache()
pert_gen_tok_texts = []
discrim_losses = []
losses_in_time = []
for i in range(num_samples):
pert_gen_tok_text, discrim_loss, loss_in_time = generate_text_pplm(
model=model,
tokenizer=tokenizer,
context=context,
device=device,
perturb=True,
bow_indices=bow_indices,
classifier=classifier,
class_label=class_id,
loss_type=loss_type,
length=length,
stepsize=stepsize,
temperature=temperature,
top_k=top_k,
sample=sample,
num_iterations=num_iterations,
grad_length=grad_length,
horizon_length=horizon_length,
window_length=window_length,
decay=decay,
gamma=gamma,
gm_scale=gm_scale,
kl_scale=kl_scale,
repetition_penalty=repetition_penalty,
)
pert_gen_tok_texts.append(pert_gen_tok_text)
if classifier is not None:
discrim_losses.append(discrim_loss.data.cpu().numpy())
losses_in_time.append(loss_in_time)
if device == "cuda":
torch.cuda.empty_cache()
return unpert_gen_tok_text, pert_gen_tok_texts, discrim_losses, losses_in_time
def generate_text_pplm(
model,
tokenizer,
context=None,
past=None,
device="cuda",
perturb=True,
bow_indices=None,
classifier=None,
class_label=None,
loss_type=0,
length=100,
stepsize=0.02,
temperature=1.0,
top_k=10,
sample=False,
num_iterations=3,
grad_length=10000,
horizon_length=1,
window_length=0,
decay=False,
gamma=1.5,
gm_scale=0.9,
kl_scale=0.01,
repetition_penalty=1.0,
):
output_so_far = None
if context:
context_t = torch.tensor(context, device=device, dtype=torch.long)
while len(context_t.shape) < 2:
context_t = context_t.unsqueeze(0)
output_so_far = context_t
# collect one hot vectors for bags of words
one_hot_bows_vectors = build_bows_one_hot_vectors(bow_indices, tokenizer, device)
grad_norms = None
last = None
unpert_discrim_loss = 0
loss_in_time = []
for i in trange(length, ascii=True):
# Get past/probs for current output, except for last word
# Note that GPT takes 2 inputs: past + current_token
# run model forward to obtain unperturbed
if past is None and output_so_far is not None:
last = output_so_far[:, -1:]
if output_so_far.shape[1] > 1:
past = model(output_so_far[:, :-1])["past_key_values"]
lm_output = model(output_so_far)
unpert_logits, unpert_past, unpert_all_hidden = (
lm_output["logits"],
lm_output["past_key_values"],
lm_output["hidden_states"],
)
unpert_last_hidden = unpert_all_hidden[-1]
# check if we are abowe grad max length
if i >= grad_length:
current_stepsize = stepsize * 0
else:
current_stepsize = stepsize
# modify the past if necessary
if not perturb or num_iterations == 0:
pert_past = past
else:
accumulated_hidden = unpert_last_hidden[:, :-1, :]
accumulated_hidden = torch.sum(accumulated_hidden, dim=1)
if past is not None:
pert_past, _, grad_norms, loss_this_iter = perturb_past(
past,
model,
last,
unpert_past=unpert_past,
unpert_logits=unpert_logits,
accumulated_hidden=accumulated_hidden,
grad_norms=grad_norms,
stepsize=current_stepsize,
one_hot_bows_vectors=one_hot_bows_vectors,
classifier=classifier,
class_label=class_label,
loss_type=loss_type,
num_iterations=num_iterations,
horizon_length=horizon_length,
window_length=window_length,
decay=decay,
gamma=gamma,
kl_scale=kl_scale,
device=device,
)
loss_in_time.append(loss_this_iter)
else:
pert_past = past
lm_output = model(last, past_key_values=pert_past)
pert_logits, past = (
lm_output["logits"],
lm_output["past_key_values"],
)
pert_logits = pert_logits[:, -1, :] / temperature # + SMALL_CONST
for token_idx in set(output_so_far[0].tolist()):
if pert_logits[0, token_idx] < 0:
pert_logits[0, token_idx] *= repetition_penalty
else:
pert_logits[0, token_idx] /= repetition_penalty
pert_probs = F.softmax(pert_logits, dim=-1)
if classifier is not None:
ce_loss = torch.nn.CrossEntropyLoss()
prediction = classifier(torch.mean(unpert_last_hidden, dim=1))
label = torch.tensor([class_label], device=device, dtype=torch.long)
unpert_discrim_loss = ce_loss(prediction, label)
print("unperturbed discrim loss", unpert_discrim_loss.data.cpu().numpy())
else:
unpert_discrim_loss = 0
# Fuse the modified model and original model
if perturb:
unpert_probs = F.softmax(unpert_logits[:, -1, :], dim=-1)
pert_probs = (pert_probs ** gm_scale) * (unpert_probs ** (1 - gm_scale)) # + SMALL_CONST
pert_probs = top_k_filter(pert_probs, k=top_k, probs=True) # + SMALL_CONST
# rescale
if torch.sum(pert_probs) <= 1:
pert_probs = pert_probs / torch.sum(pert_probs)
else:
pert_logits = top_k_filter(pert_logits, k=top_k) # + SMALL_CONST
pert_probs = F.softmax(pert_logits, dim=-1)
# sample or greedy
if sample:
last = torch.multinomial(pert_probs, num_samples=1)
else:
_, last = torch.topk(pert_probs, k=1, dim=-1)
# update context/output_so_far appending the new token
output_so_far = last if output_so_far is None else torch.cat((output_so_far, last), dim=1)
print(tokenizer.decode(output_so_far.tolist()[0]))
return output_so_far, unpert_discrim_loss, loss_in_time
def set_generic_model_params(discrim_weights, discrim_meta):
if discrim_weights is None:
raise ValueError("When using a generic discriminator, discrim_weights need to be specified")
if discrim_meta is None:
raise ValueError("When using a generic discriminator, discrim_meta need to be specified")
with open(discrim_meta, "r") as discrim_meta_file:
meta = json.load(discrim_meta_file)
meta["path"] = discrim_weights
DISCRIMINATOR_MODELS_PARAMS["generic"] = meta
def run_pplm_example(
pretrained_model="gpt2-medium",
cond_text="",
uncond=False,
num_samples=1,
bag_of_words=None,
discrim=None,
discrim_weights=None,
discrim_meta=None,
class_label=-1,
length=100,
stepsize=0.02,
temperature=1.0,
top_k=10,
sample=False,
num_iterations=3,
grad_length=10000,
horizon_length=1,
window_length=0,
decay=False,
gamma=1.5,
gm_scale=0.9,
kl_scale=0.01,
seed=0,
no_cuda=False,
colorama=False,
repetition_penalty=1.0,
):
# set Random seed
torch.manual_seed(seed)
np.random.seed(seed)
# set the device
device = "cuda" if torch.cuda.is_available() and not no_cuda else "cpu"
if discrim == "generic":
set_generic_model_params(discrim_weights, discrim_meta)
if discrim is not None:
pretrained_model = DISCRIMINATOR_MODELS_PARAMS[discrim]["pretrained_model"]
print("discrim = {}, pretrained_model set to discriminator's = {}".format(discrim, pretrained_model))
# load pretrained model
model = GPT2LMHeadModel.from_pretrained(pretrained_model, output_hidden_states=True)
model.to(device)
model.eval()
# load tokenizer
tokenizer = GPT2Tokenizer.from_pretrained(pretrained_model)
# Freeze GPT-2 weights
for param in model.parameters():
param.requires_grad = False
# figure out conditioning text
if uncond:
tokenized_cond_text = tokenizer.encode([tokenizer.bos_token])
else:
raw_text = cond_text
while not raw_text:
print("Did you forget to add `--cond_text`? ")
raw_text = input("Model prompt >>> ")
tokenized_cond_text = tokenizer.encode(tokenizer.bos_token + raw_text)
print("= Prefix of sentence =")
print(tokenizer.decode(tokenized_cond_text))
print()
# generate unperturbed and perturbed texts
# full_text_generation returns:
# unpert_gen_tok_text, pert_gen_tok_texts, discrim_losses, losses_in_time
unpert_gen_tok_text, pert_gen_tok_texts, _, _ = full_text_generation(
model=model,
tokenizer=tokenizer,
context=tokenized_cond_text,
device=device,
num_samples=num_samples,
bag_of_words=bag_of_words,
discrim=discrim,
class_label=class_label,
length=length,
stepsize=stepsize,
temperature=temperature,
top_k=top_k,
sample=sample,
num_iterations=num_iterations,
grad_length=grad_length,
horizon_length=horizon_length,
window_length=window_length,
decay=decay,
gamma=gamma,
gm_scale=gm_scale,
kl_scale=kl_scale,
repetition_penalty=repetition_penalty,
)
# untokenize unperturbed text
unpert_gen_text = tokenizer.decode(unpert_gen_tok_text.tolist()[0])
print("=" * 80)
print("= Unperturbed generated text =")
print(unpert_gen_text)
print()
generated_texts = []
bow_word_ids = set()
if bag_of_words and colorama:
bow_indices = get_bag_of_words_indices(bag_of_words.split(";"), tokenizer)
for single_bow_list in bow_indices:
# filtering all words in the list composed of more than 1 token
filtered = list(filter(lambda x: len(x) <= 1, single_bow_list))
# w[0] because we are sure w has only 1 item because previous fitler
bow_word_ids.update(w[0] for w in filtered)
# iterate through the perturbed texts
for i, pert_gen_tok_text in enumerate(pert_gen_tok_texts):
try:
# untokenize unperturbed text
if colorama:
import colorama
pert_gen_text = ""
for word_id in pert_gen_tok_text.tolist()[0]:
if word_id in bow_word_ids:
pert_gen_text += "{}{}{}".format(
colorama.Fore.RED,
tokenizer.decode([word_id]),
colorama.Style.RESET_ALL,
)
else:
pert_gen_text += tokenizer.decode([word_id])
else:
pert_gen_text = tokenizer.decode(pert_gen_tok_text.tolist()[0])
print("= Perturbed generated text {} =".format(i + 1))
print(pert_gen_text)
print()
except Exception as exc:
print("Ignoring error while generating perturbed text:", exc)
# keep the prefix, perturbed seq, original seq for each index
generated_texts.append((tokenized_cond_text, pert_gen_tok_text, unpert_gen_tok_text))
return
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument(
"--pretrained_model",
"-M",
type=str,
default="gpt2-medium",
help="pretrained model name or path to local checkpoint",
)
parser.add_argument("--cond_text", type=str, default="The lake", help="Prefix texts to condition on")
parser.add_argument("--uncond", action="store_true", help="Generate from end-of-text as prefix")
parser.add_argument(
"--num_samples",
type=int,
default=1,
help="Number of samples to generate from the modified latents",
)
parser.add_argument(
"--bag_of_words",
"-B",
type=str,
default=None,
help=(
"Bags of words used for PPLM-BoW. "
"Either a BOW id (see list in code) or a filepath. "
"Multiple BoWs separated by ;"
),
)
parser.add_argument(
"--discrim",
"-D",
type=str,
default=None,
choices=("clickbait", "sentiment", "toxicity", "generic"),
help="Discriminator to use",
)
parser.add_argument(
"--discrim_weights",
type=str,
default=None,
help="Weights for the generic discriminator",
)
parser.add_argument(
"--discrim_meta",
type=str,
default=None,
help="Meta information for the generic discriminator",
)
parser.add_argument(
"--class_label",
type=int,
default=-1,
help="Class label used for the discriminator",
)
parser.add_argument("--length", type=int, default=100)
parser.add_argument("--stepsize", type=float, default=0.02)
parser.add_argument("--temperature", type=float, default=1.0)
parser.add_argument("--top_k", type=int, default=10)
parser.add_argument("--sample", action="store_true", help="Generate from end-of-text as prefix")
parser.add_argument("--num_iterations", type=int, default=3)
parser.add_argument("--grad_length", type=int, default=10000)
parser.add_argument(
"--window_length",
type=int,
default=0,
help="Length of past which is being optimized; 0 corresponds to infinite window length",
)
parser.add_argument(
"--horizon_length",
type=int,
default=1,
help="Length of future to optimize over",
)
parser.add_argument("--decay", action="store_true", help="whether to decay or not")
parser.add_argument("--gamma", type=float, default=1.5)
parser.add_argument("--gm_scale", type=float, default=0.9)
parser.add_argument("--kl_scale", type=float, default=0.01)
parser.add_argument("--seed", type=int, default=0)
parser.add_argument("--no_cuda", action="store_true", help="no cuda")
parser.add_argument("--colorama", action="store_true", help="colors keywords")
parser.add_argument(
"--repetition_penalty",
type=float,
default=1.0,
help="Penalize repetition. More than 1.0 -> less repetition",
)
args = parser.parse_args()
run_pplm_example(**vars(args))
|
AdaMix/examples/research_projects/pplm/run_pplm.py/0
|
{
"file_path": "AdaMix/examples/research_projects/pplm/run_pplm.py",
"repo_id": "AdaMix",
"token_count": 13228
}
| 39 |
# the proper usage is documented in the README, you need to specify data_dir, output_dir and model_name_or_path
# run ./finetune.sh --help to see all the possible options
python finetune.py \
--learning_rate=3e-5 \
--fp16 \
--gpus 1 \
--do_train \
--do_predict \
--n_val 1000 \
--val_check_interval 0.1 \
"$@"
|
AdaMix/examples/research_projects/seq2seq-distillation/finetune.sh/0
|
{
"file_path": "AdaMix/examples/research_projects/seq2seq-distillation/finetune.sh",
"repo_id": "AdaMix",
"token_count": 138
}
| 40 |
#!/usr/bin/env bash
python run_asr.py \
--output_dir="./wav2vec2-large-lv60-100h" \
--num_train_epochs="30" \
--per_device_train_batch_size="16" \
--per_device_eval_batch_size="16" \
--evaluation_strategy="steps" \
--save_total_limit="3" \
--save_steps="500" \
--eval_steps="100" \
--logging_steps="50" \
--learning_rate="5e-4" \
--warmup_steps="3000" \
--model_name_or_path="facebook/wav2vec2-large-lv60" \
--fp16 \
--dataset_name="librispeech_asr" \
--dataset_config_name="clean" \
--train_split_name="train.100" \
--preprocessing_num_workers="32" \
--group_by_length \
--freeze_feature_extractor
|
AdaMix/examples/research_projects/wav2vec2/finetune_large_lv60_100.sh/0
|
{
"file_path": "AdaMix/examples/research_projects/wav2vec2/finetune_large_lv60_100.sh",
"repo_id": "AdaMix",
"token_count": 255
}
| 41 |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import math
import os
import sys
import unittest
from unittest.mock import patch
from transformers.file_utils import is_apex_available
from transformers.integrations import is_fairscale_available
from transformers.testing_utils import (
TestCasePlus,
execute_subprocess_async,
get_gpu_count,
require_torch_gpu,
require_torch_multi_gpu,
require_torch_non_multi_gpu,
slow,
)
from transformers.trainer_callback import TrainerState
from transformers.trainer_utils import set_seed
bindir = os.path.abspath(os.path.dirname(__file__))
sys.path.append(f"{bindir}/../../seq2seq")
from run_translation import main # noqa
set_seed(42)
MARIAN_MODEL = "sshleifer/student_marian_en_ro_6_1"
MBART_TINY = "sshleifer/tiny-mbart"
# a candidate for testing_utils
def require_fairscale(test_case):
"""
Decorator marking a test that requires fairscale
"""
if not is_fairscale_available():
return unittest.skip("test requires fairscale")(test_case)
else:
return test_case
# a candidate for testing_utils
def require_apex(test_case):
"""
Decorator marking a test that requires apex
"""
if not is_apex_available():
return unittest.skip("test requires apex")(test_case)
else:
return test_case
class TestTrainerExt(TestCasePlus):
def run_seq2seq_quick(self, distributed=False, extra_args_str=None, predict_with_generate=True):
output_dir = self.run_trainer(
eval_steps=1,
max_len=12,
model_name=MBART_TINY,
num_train_epochs=1,
distributed=distributed,
extra_args_str=extra_args_str,
predict_with_generate=predict_with_generate,
)
logs = TrainerState.load_from_json(os.path.join(output_dir, "trainer_state.json")).log_history
eval_metrics = [log for log in logs if "eval_loss" in log.keys()]
first_step_stats = eval_metrics[0]
if predict_with_generate:
assert "eval_bleu" in first_step_stats
last_step_stats = eval_metrics[-1]
assert isinstance(last_step_stats["eval_bleu"], float)
assert not math.isnan(float(last_step_stats["eval_loss"])), "eval_loss must not be `nan`"
@require_torch_non_multi_gpu
def test_run_seq2seq_no_dist(self):
self.run_seq2seq_quick()
# verify that the trainer can handle non-distributed with n_gpu > 1
@require_torch_multi_gpu
def test_run_seq2seq_dp(self):
self.run_seq2seq_quick(distributed=False)
# verify that the trainer can handle distributed with n_gpu > 1
@require_torch_multi_gpu
def test_run_seq2seq_ddp(self):
self.run_seq2seq_quick(distributed=True)
# test --sharded_ddp w/o --fp16
@require_torch_multi_gpu
@require_fairscale
def test_run_seq2seq_sharded_ddp(self):
self.run_seq2seq_quick(distributed=True, extra_args_str="--sharded_ddp simple")
# test --sharded_ddp w/ --fp16
@require_torch_multi_gpu
@require_fairscale
def test_run_seq2seq_sharded_ddp_fp16(self):
self.run_seq2seq_quick(distributed=True, extra_args_str="--sharded_ddp simple --fp16")
# test --sharded_ddp zero_dp_2 w/o --fp16
@require_torch_multi_gpu
@require_fairscale
def test_run_seq2seq_fully_sharded_ddp(self):
self.run_seq2seq_quick(distributed=True, extra_args_str="--sharded_ddp zero_dp_2", predict_with_generate=False)
# test --sharded_ddp zero_dp_2 w/ --fp16
@require_torch_multi_gpu
@require_fairscale
def test_run_seq2seq_fully_sharded_ddp_fp16(self):
self.run_seq2seq_quick(
distributed=True, extra_args_str="--sharded_ddp zero_dp_2 --fp16", predict_with_generate=False
)
@require_apex
@require_torch_gpu
def test_run_seq2seq_apex(self):
# XXX: apex breaks the trainer if it's run twice e.g. run_seq2seq.main() from the same
# program and it breaks other tests that run from the same pytest worker, therefore until this is
# sorted out it must be run only in an external program, that is distributed=True in this
# test and only under one or more gpus - if we want cpu will need to make a special test
#
# specifically to the problem traced it to self.optimizer.step() - if it's run 2nd time via
# 2nd main() call it botches the future eval.
#
self.run_seq2seq_quick(distributed=True, extra_args_str="--fp16 --fp16_backend=apex")
# test 2nd time - was getting eval_loss': nan'
# to reproduce the problem set distributed=False
self.run_seq2seq_quick(distributed=True, extra_args_str="--fp16 --fp16_backend=apex")
@slow
def test_run_seq2seq_slow(self):
output_dir = self.run_trainer(
eval_steps=2,
max_len=128,
model_name=MARIAN_MODEL,
learning_rate=3e-4,
num_train_epochs=10,
distributed=False,
)
# Check metrics
logs = TrainerState.load_from_json(os.path.join(output_dir, "trainer_state.json")).log_history
eval_metrics = [log for log in logs if "eval_loss" in log.keys()]
first_step_stats = eval_metrics[0]
last_step_stats = eval_metrics[-1]
assert first_step_stats["eval_loss"] > last_step_stats["eval_loss"], "model learned nothing"
assert isinstance(last_step_stats["eval_bleu"], float)
# test if do_predict saves generations and metrics
contents = os.listdir(output_dir)
contents = {os.path.basename(p) for p in contents}
assert "test_generations.txt" in contents
assert "test_results.json" in contents
def run_trainer(
self,
eval_steps: int,
max_len: int,
model_name: str,
num_train_epochs: int,
learning_rate: float = 3e-3,
distributed: bool = False,
extra_args_str: str = None,
predict_with_generate: bool = True,
):
data_dir = self.examples_dir / "test_data/wmt_en_ro"
output_dir = self.get_auto_remove_tmp_dir()
args = f"""
--model_name_or_path {model_name}
--train_file {data_dir}/train.json
--validation_file {data_dir}/val.json
--test_file {data_dir}/test.json
--output_dir {output_dir}
--overwrite_output_dir
--max_train_samples 8
--max_val_samples 8
--max_source_length {max_len}
--max_target_length {max_len}
--val_max_target_length {max_len}
--do_train
--do_eval
--do_predict
--num_train_epochs {str(num_train_epochs)}
--per_device_train_batch_size 4
--per_device_eval_batch_size 4
--learning_rate {learning_rate}
--warmup_steps 8
--evaluation_strategy steps
--logging_steps 0
--eval_steps {str(eval_steps)}
--save_steps {str(eval_steps)}
--group_by_length
--label_smoothing_factor 0.1
--adafactor
--target_lang ro_RO
--source_lang en_XX
"""
if predict_with_generate:
args += "--predict_with_generate"
args = args.split()
if extra_args_str is not None:
args.extend(extra_args_str.split())
if distributed:
n_gpu = get_gpu_count()
distributed_args = f"""
-m torch.distributed.launch
--nproc_per_node={n_gpu}
{self.examples_dir_str}/seq2seq/run_translation.py
""".split()
cmd = [sys.executable] + distributed_args + args
execute_subprocess_async(cmd, env=self.get_env())
else:
testargs = ["run_translation.py"] + args
with patch.object(sys, "argv", testargs):
main()
return output_dir
|
AdaMix/examples/tests/trainer/test_trainer_ext.py/0
|
{
"file_path": "AdaMix/examples/tests/trainer/test_trainer_ext.py",
"repo_id": "AdaMix",
"token_count": 3774
}
| 42 |
<jupyter_start><jupyter_text>**How to benchmark models with Transformers**With ever-larger language models, it is no longer enough to just compare models on their performance on a specific task. One should always be aware of the computational cost that is attached to a specific model. For a given computation environment (*e.g.* type of GPU), the computational cost of training a model or deploying it in inference usually depends only on **the required memory** and **the required time**. Being able to accurately benchmark language models on both *speed* and *required memory* is therefore very important.HuggingFace's Transformer library allows users to benchmark models for both TensorFlow 2 and PyTorch using the `PyTorchBenchmark` and `TensorFlowBenchmark` classes.The currently available features for `PyTorchBenchmark` are summarized in the following table.| | CPU | CPU + torchscript | GPU | GPU + torchscript | GPU + FP16 | TPU |:-- | :--- | :--- | :--- | :--- | :--- | :--- |**Speed - Inference** | ✔ | ✔ | ✔ | ✔ | ✔ | ✔ |**Memory - Inference** | ✔ | ✔ | ✔ | ✔ | ✔ | ✘ |**Speed - Train** | ✔ | ✘ | ✔ | ✘ | ✔ | ✔ |**Memory - Train** | ✔ | ✘ | ✔ | ✘ | ✔ | ✘ |* *FP16* stands for mixed-precision meaning that computations within the model are done using a mixture of 16-bit and 32-bit floating-point operations, see [here](https://pytorch.org/docs/stable/nn.htmltorch.nn.Module.half) for more detail.* *torchscript* corresponds to PyTorch's torchscript format, see [here](https://pytorch.org/docs/stable/jit.html).The currently available features for `TensorFlowBenchmark` are summarized in the following table.| | CPU | CPU + eager execution | GPU | GPU + eager execution | GPU + XLA | GPU + FP16 | TPU |:-- | :--- | :--- | :--- | :--- | :--- | :--- | :--- |**Speed - Inference** | ✔ | ✔ | ✔ | ✔ | ✔ | ✘ | ✔ |**Memory - Inference** | ✔ | ✔ | ✔ | ✔ | ✔ | ✘ | ✘ |**Speed - Train** | ✔ | ✘ | ✔ | ✘ | ✘ | ✘ | ✔ |**Memory - Train** | ✔ | ✘ | ✔ | ✘ | ✘ | ✘ | ✘ |* *eager execution* means that the function is run in the eager execution environment of TensorFlow 2, see [here](https://www.tensorflow.org/guide/eager).* *XLA* stands for TensorFlow's Accelerated Linear Algebra (XLA) compiler, see [here](https://www.tensorflow.org/xla)* *FP16* stands for TensorFlow's mixed-precision package and is analogous to PyTorch's FP16 feature, see [here](https://www.tensorflow.org/guide/mixed_precision).***Note***: Benchmark training in TensorFlow is not included in v3.0.2, but available in master.This notebook will show the user how to use `PyTorchBenchmark` and `TensorFlowBenchmark` for two different scenarios:1. **Inference - Pre-trained Model Comparison** - *A user wants to implement a pre-trained model in production for inference. She wants to compare different models on speed and required memory.*2. **Training - Configuration Comparison** - *A user wants to train a specific model and searches that for himself most effective model configuration.* **Inference - Pre-trained Model Comparison**Let's say we want to employ a question-answering model in production. The questions are expected to be of the same format as in **SQuAD v2**, so that the model to choose should have been fine-tuned on this dataset. HuggingFace's new dataset [webpage](https://huggingface.co/datasets) lets the user see all relevant information about a dataset and even links the models that have been fine-tuned on this specific dataset. Let's check out the dataset webpage of SQuAD v2 [here](https://huggingface.co/datasets/squad_v2).Nice, we can see that there are 7 available models.Let's assume that we have decided to restrict our pipeline to "encoder-only" models so that we are left with:- `a-ware/roberta-large-squad-classification`- `a-ware/xlmroberta-squadv2`- `aodiniz/bert_uncased_L-10_H-512_A-8_cord19-200616_squad2`- `deepset/roberta-base-squad2`- `mrm8488/longformer-base-4096-finetuned-squadv2`Great! In this notebook, we will now benchmark these models on both peak memory consumption and inference time to decide which model should be employed in production.***Note***: None of the models has been tested on performance so that we will just assume that all models perform more or less equally well. The purpose of this notebook is not to find the best model for SQuAD v2, but to showcase how Transformers benchmarking tools can be leveraged.First, we assume to be limited by the available GPU on this google colab, which in this copy amounts to 16 GB of RAM. In a first step, we will check which models are the most memory-efficient ones.Let's make sure 100% of the GPU is available to us in this notebook.<jupyter_code>#@title Check available memory of GPU
# Check that we are using 100% of GPU
# memory footprint support libraries/code
!ln -sf /opt/bin/nvidia-smi /usr/bin/nvidia-smi
!pip -q install gputil
!pip -q install psutil
!pip -q install humanize
import psutil
import humanize
import os
import GPUtil as GPU
GPUs = GPU.getGPUs()
# XXX: only one GPU on Colab and isn’t guaranteed
gpu = GPUs[0]
def printm():
process = psutil.Process(os.getpid())
print("Gen RAM Free: " + humanize.naturalsize( psutil.virtual_memory().available ), " | Proc size: " + humanize.naturalsize( process.memory_info().rss))
print("GPU RAM Free: {0:.0f}MB | Used: {1:.0f}MB | Util {2:3.0f}% | Total {3:.0f}MB".format(gpu.memoryFree, gpu.memoryUsed, gpu.memoryUtil*100, gpu.memoryTotal))
printm()
# If GPU RAM Util > 0% => crash notebook on purpose
# !kill -9 -1<jupyter_output><empty_output><jupyter_text>Looks good! Now we import `transformers` and download the scripts `run_benchmark.py`, `run_benchmark_tf.py`, and `plot_csv_file.py` which can be found under `transformers/examples/benchmarking`.`run_benchmark_tf.py` and `run_benchmark.py` are very simple scripts leveraging the `PyTorchBenchmark` and `TensorFlowBenchmark` classes, respectively.<jupyter_code># install transformes
!pip uninstall -y transformers
!pip install -q git+https://github.com/huggingface/transformers.git
# install py3nvml to track GPU memory usage
!pip install -q py3nvml
!rm -f run_benchmark.py
!rm -f run_benchmark_tf.py
!rm -f plot_csv_file.py
!wget https://raw.githubusercontent.com/huggingface/transformers/master/examples/benchmarking/run_benchmark.py -qq
!wget https://raw.githubusercontent.com/huggingface/transformers/master/examples/benchmarking/run_benchmark_tf.py -qq
!wget https://raw.githubusercontent.com/huggingface/transformers/master/examples/benchmarking/plot_csv_file.py -qq
# import pandas to pretty print csv files
import pandas as pd<jupyter_output><empty_output><jupyter_text>Information about the input arguments to the *run_benchmark* scripts can be accessed by running `!python run_benchmark.py --help` for PyTorch and `!python run_benchmark_tf.py --help` for TensorFlow.<jupyter_code>!python run_benchmark.py --help<jupyter_output>2020-06-26 11:51:47.129203: I tensorflow/stream_executor/platform/default/dso_loader.cc:44] Successfully opened dynamic library libcudart.so.10.1
usage: run_benchmark.py [-h] [--models MODELS [MODELS ...]]
[--batch_sizes BATCH_SIZES [BATCH_SIZES ...]]
[--sequence_lengths SEQUENCE_LENGTHS [SEQUENCE_LENGTHS ...]]
[--no_inference] [--no_cuda] [--no_tpu] [--fp16]
[--training] [--verbose] [--no_speed] [--no_memory]
[--trace_memory_line_by_line] [--save_to_csv]
[--log_print] [--no_env_print] [--no_multi_process]
[--with_lm_head]
[--inference_time_csv_file INFERENCE_TIME_CSV_FILE]
[--inference_memory_csv_file INFERENCE_MEMORY_CSV_FILE]
[--train_time_csv_file TRAIN_TIME_CSV_FILE]
[--train_memory_csv_file TRAIN_MEMORY_CSV_FILE]
[...]<jupyter_text>Great, we are ready to run our first memory benchmark. By default, both the *required memory* and *time* for inference is enabled. To disable benchmarking on *time*, we add `--no_speed`.The only required parameter is `--models` which expects a list of model identifiers as defined on the [model hub](https://huggingface.co/models). Here we add the five model identifiers listed above.Next, we define the `sequence_lengths` and `batch_sizes` for which the peak memory is calculated.Finally, because the results should be stored in a *CSV* file, the option `--save_to_csv` is added and the path to save the results is added via the `--inference_memory_csv_file` argument. Whenever a benchmark is run, the environment information, *e.g.* GPU type, library versions, ... can be saved using the `--env_info_csv_file` argument.<jupyter_code># create plots folder in content
!mkdir -p plots_pt
# run benchmark
!python run_benchmark.py --no_speed --save_to_csv \
--models a-ware/roberta-large-squad-classification \
a-ware/xlmroberta-squadv2 \
aodiniz/bert_uncased_L-10_H-512_A-8_cord19-200616_squad2 \
deepset/roberta-base-squad2 \
mrm8488/longformer-base-4096-finetuned-squadv2 \
--sequence_lengths 32 128 512 1024 \
--batch_sizes 32 \
--inference_memory_csv_file plots_pt/required_memory.csv \
--env_info_csv_file plots_pt/env.csv >/dev/null 2>&1 # redirect all prints<jupyter_output><empty_output><jupyter_text>Under `plots_pt`, two files are now created: `required_memory.csv` and `env.csv`. Let's check out `required_memory.csv` first.<jupyter_code>df = pd.read_csv('plots_pt/required_memory.csv')
df<jupyter_output><empty_output><jupyter_text>Each row in the csv file lists one data point showing the *peak memory* usage for a given model, batch_size and sequence_length. As can be seen, some values have a *NaN* result meaning that an *Out-of-Memory* Error occurred. To better visualize the results, one can make use of the `plot_csv_file.py` script.Before, let's take a look at the information about our computation environment.<jupyter_code>df = pd.read_csv('plots_pt/env.csv')
df<jupyter_output><empty_output><jupyter_text>We can see all relevant information here: the PyTorch version, the Python version, the system, the type of GPU, and available RAM on the GPU, etc...**Note**: A different GPU is likely assigned to a copy of this notebook, so that all of the following results may be different. It is very important to always include the environment information when benchmarking your models for both reproducibility and transparency to other users.Alright, let's plot the results.<jupyter_code># plot graph and save as image
!python plot_csv_file.py --csv_file plots_pt/required_memory.csv --figure_png_file=plots_pt/required_memory_plot.png --no_log_scale --short_model_names a-ware-roberta a-aware-xlm aodiniz-bert deepset-roberta mrm8488-long
# show image
from IPython.display import Image
Image('plots_pt/required_memory_plot.png')<jupyter_output>2020-06-26 11:56:39.671579: I tensorflow/stream_executor/platform/default/dso_loader.cc:44] Successfully opened dynamic library libcudart.so.10.1<jupyter_text>At this point, it is important to understand how the peak memory is measured. The benchmarking tools measure the peak memory usage the same way the command `nvidia-smi` does - see [here](https://developer.nvidia.com/nvidia-system-management-interface) for more information. In short, all memory that is allocated for a given *model identifier*, *batch size* and *sequence length* is measured in a separate process. This way it can be ensured that there is no previously unreleased memory falsely included in the measurement. One should also note that the measured memory even includes the memory allocated by the CUDA driver to load PyTorch and TensorFlow and is, therefore, higher than library-specific memory measurement function, *e.g.* this one for [PyTorch](https://pytorch.org/docs/stable/cuda.htmltorch.cuda.max_memory_allocated).Alright, let's analyze the results. It can be noted that the models `aodiniz/bert_uncased_L-10_H-512_A-8_cord19-200616_squad2` and `deepset/roberta-base-squad2` require significantly less memory than the other three models. Besides `mrm8488/longformer-base-4096-finetuned-squadv2` all models more or less follow the same memory consumption pattern with `aodiniz/bert_uncased_L-10_H-512_A-8_cord19-200616_squad2` seemingly being able to better scale to larger sequence lengths. `mrm8488/longformer-base-4096-finetuned-squadv2` is a *Longformer* model, which makes use of *LocalAttention* (check [this](https://huggingface.co/blog/reformer) blog post to learn more about local attention) so that the model scales much better to longer input sequences.For the sake of this notebook, we assume that the longest required input will be less than 512 tokens so that we settle on the models `aodiniz/bert_uncased_L-10_H-512_A-8_cord19-200616_squad2` and `deepset/roberta-base-squad2`. To better understand how many API requests of our *question-answering* pipeline can be run in parallel, we are interested in finding out how many batches the two models run out of memory.<jupyter_code>!python run_benchmark.py --no_speed --save_to_csv \
--inference_memory_csv_file plots_pt/required_memory_2.csv \
--env_info_csv_file plots_pt/env.csv \
--models aodiniz/bert_uncased_L-10_H-512_A-8_cord19-200616_squad2 \
deepset/roberta-base-squad2 \
--sequence_lengths 512 \
--batch_sizes 64 128 256 512\
--no_env_print<jupyter_output>2020-06-26 11:56:44.781155: I tensorflow/stream_executor/platform/default/dso_loader.cc:44] Successfully opened dynamic library libcudart.so.10.1
1 / 2
2 / 2
Doesn't fit on GPU. CUDA out of memory. Tried to allocate 6.00 GiB (GPU 0; 15.90 GiB total capacity; 9.47 GiB already allocated; 5.60 GiB free; 9.52 GiB reserved in total by PyTorch)
==================== INFERENCE - MEMORY - RESULT ====================
--------------------------------------------------------------------------------
Model Name Batch Size Seq Length Memory in MB
--------------------------------------------------------------------------------
aodiniz/bert_uncased_L-10_H-51 64 512 2455
aodiniz/bert_uncased_L-10_H-51 128 512 3929
aodiniz/bert_uncased_L-10_H-51 256 512 6875
aodiniz/bert_uncased_L-10_H-51 512 512 12783
deepset/roberta-base-squad[...]<jupyter_text>Let's plot the results again, this time changing the x-axis to `batch_size` however.<jupyter_code># plot graph and save as image
!python plot_csv_file.py --csv_file plots_pt/required_memory_2.csv \
--figure_png_file=plots_pt/required_memory_plot_2.png \
--no_log_scale \
--short_model_names aodiniz-bert deepset-roberta \
--plot_along_batch
# show image
from IPython.display import Image
Image('plots_pt/required_memory_plot_2.png')<jupyter_output>2020-06-26 11:57:51.876810: I tensorflow/stream_executor/platform/default/dso_loader.cc:44] Successfully opened dynamic library libcudart.so.10.1<jupyter_text>Interesting! `aodiniz/bert_uncased_L-10_H-51` clearly scales better for higher batch sizes and does not even run out of memory for 512 tokens.For comparison, let's run the same benchmarking on TensorFlow.<jupyter_code># create plots folder in content
!mkdir -p plots_tf
!TF_CPP_MIN_LOG_LEVEL=3 python run_benchmark_tf.py --no_speed --save_to_csv \
--inference_memory_csv_file plots_tf/required_memory_2.csv \
--env_info_csv_file plots_tf/env.csv \
--models aodiniz/bert_uncased_L-10_H-512_A-8_cord19-200616_squad2 \
deepset/roberta-base-squad2 \
--sequence_lengths 512 \
--batch_sizes 64 128 256 512 \
--no_env_print \<jupyter_output>1 / 2
Doesn't fit on GPU. OOM when allocating tensor with shape[512,8,512,512] and type float on /job:localhost/replica:0/task:0/device:GPU:0 by allocator GPU_0_bfc
[[node tf_bert_model/bert/encoder/layer_._0/attention/self/Softmax (defined at /usr/local/lib/python3.6/dist-packages/transformers/modeling_tf_bert.py:267) ]]
Hint: If you want to see a list of allocated tensors when OOM happens, add report_tensor_allocations_upon_oom to RunOptions for current allocation info.
[Op:__inference_run_in_graph_mode_4243]
Errors may have originated from an input operation.
Input Source operations connected to node tf_bert_model/bert/encoder/layer_._0/attention/self/Softmax:
tf_bert_model/bert/encoder/layer_._0/attention/self/add (defined at /usr/local/lib/python3.6/dist-packages/transformers/modeling_tf_bert.py:264)
Function call stack:
run_in_graph_mode
2 / 2
Doesn't fit on GPU. OOM when allocating tensor with shape[512,12,512,512] and type float on /job:localhost/replica:0/task:0/devic[...]<jupyter_text>Let's see the same plot for TensorFlow.<jupyter_code># plot graph and save as image
!python plot_csv_file.py --csv_file plots_tf/required_memory_2.csv --figure_png_file=plots_tf/required_memory_plot_2.png --no_log_scale --short_model_names aodiniz-bert deepset-roberta --plot_along_batch
# show image
from IPython.display import Image
Image('plots_tf/required_memory_plot_2.png')<jupyter_output>2020-06-26 11:59:28.790462: I tensorflow/stream_executor/platform/default/dso_loader.cc:44] Successfully opened dynamic library libcudart.so.10.1<jupyter_text>The model implemented in TensorFlow requires more memory than the one implemented in PyTorch. Let's say for whatever reason we have decided to use TensorFlow instead of PyTorch. The next step is to measure the inference time of these two models. Instead of disabling time measurement with `--no_speed`, we will now disable memory measurement with `--no_memory`.<jupyter_code>!TF_CPP_MIN_LOG_LEVEL=3 python run_benchmark_tf.py --no_memory --save_to_csv \
--inference_time_csv_file plots_tf/time_2.csv \
--env_info_csv_file plots_tf/env.csv \
--models aodiniz/bert_uncased_L-10_H-512_A-8_cord19-200616_squad2 \
deepset/roberta-base-squad2 \
--sequence_lengths 8 32 128 512 \
--batch_sizes 256 \
--no_env_print \
# plot graph and save as image
!python plot_csv_file.py --csv_file plots_tf/time_2.csv --figure_png_file=plots_tf/time_plot_2.png --no_log_scale --short_model_names aodiniz-bert deepset-roberta --is_time
# show image
from IPython.display import Image
Image('plots_tf/time_plot_2.png')<jupyter_output>2020-06-26 12:04:58.002654: I tensorflow/stream_executor/platform/default/dso_loader.cc:44] Successfully opened dynamic library libcudart.so.10.1<jupyter_text>Ok, this took some time... time measurements take much longer than memory measurements because the forward pass is called multiple times for stable results. Timing measurements leverage Python's [timeit module](https://docs.python.org/2/library/timeit.htmltimeit.Timer.repeat) and run 10 times the value given to the `--repeat` argument (defaults to 3), so in our case 30 times.Let's focus on the resulting plot. It becomes obvious that `aodiniz/bert_uncased_L-10_H-51` is around twice as fast as `deepset/roberta-base-squad2`. Given that the model is also more memory efficient and assuming that the model performs reasonably well, for the sake of this notebook we will settle on `aodiniz/bert_uncased_L-10_H-51`. Our model should be able to process input sequences of up to 512 tokens. Latency time of around 2 seconds might be too long though, so let's compare the time for different batch sizes and using TensorFlows XLA package for more speed.<jupyter_code>!TF_CPP_MIN_LOG_LEVEL=3 python run_benchmark_tf.py --no_memory --save_to_csv \
--inference_time_csv_file plots_tf/time_xla_1.csv \
--env_info_csv_file plots_tf/env.csv \
--models aodiniz/bert_uncased_L-10_H-512_A-8_cord19-200616_squad2 \
--sequence_lengths 512 \
--batch_sizes 8 64 256 \
--no_env_print \
--use_xla<jupyter_output>1 / 1
==================== INFERENCE - SPEED - RESULT ====================
--------------------------------------------------------------------------------
Model Name Batch Size Seq Length Time in s
--------------------------------------------------------------------------------
aodiniz/bert_uncased_L-10_H-51 8 512 0.056
aodiniz/bert_uncased_L-10_H-51 64 512 0.402
aodiniz/bert_uncased_L-10_H-51 256 512 1.591
--------------------------------------------------------------------------------
Saving results to csv.<jupyter_text>First of all, it can be noted that XLA reduces latency time by a factor of ca. 1.3 (which is more than observed for other models by TensorFlow [here](https://www.tensorflow.org/xla)). A batch size of 64 looks like a good choice. More or less half a second for the forward pass is good enough.Cool, now it should be straightforward to benchmark your favorite models. All the inference time measurements can also be done using the `run_benchmark.py` script for PyTorch. **Training - Configuration Comparison**Next, we will look at how a model can be benchmarked on different configurations. This is especially helpful when one wants to decide how to most efficiently choose the model's configuration parameters for training.In the following different configurations of a *Bart MNLI* model will be compared to each other using `PyTorchBenchmark`. Training in `PyTorchBenchmark` is defined by running one forward pass to compute the loss: `loss = model(input_ids, labels=labels)[0]` and one backward pass to compute the gradients `loss.backward()`.Let's see how to most efficiently train a Bart MNLI model from scratch.<jupyter_code># Imports
from transformers import BartConfig, PyTorchBenchmark, PyTorchBenchmarkArguments<jupyter_output><empty_output><jupyter_text>For the sake of the notebook, we assume that we are looking for a more efficient version of Facebook's `bart-large-mnli` model.Let's load its configuration and check out the important parameters.<jupyter_code>BartConfig.from_pretrained("facebook/bart-large-mnli").to_diff_dict()<jupyter_output><empty_output><jupyter_text>Alright! The important configuration parameters are usually the number of layers `config.encoder_num_layers` and `config.decoder_num_layers`, the model's hidden size: `config.d_model`, the number of attention heads `config.encoder_attention_heads` and `config.decoder_attention_heads` and the vocabulary size `config.vocab_size`.Let's create 4 configurations different from the baseline and see how they compare in terms of peak memory consumption.<jupyter_code>config_baseline = BartConfig.from_pretrained("facebook/bart-large-mnli")
config_768_hidden = BartConfig.from_pretrained("facebook/bart-large-mnli", d_model=768)
config_8_heads = BartConfig.from_pretrained("facebook/bart-large-mnli", decoder_attention_heads=8, encoder_attention_heads=8)
config_10000_vocab = BartConfig.from_pretrained("facebook/bart-large-mnli", vocab_size=10000)
config_8_layers = BartConfig.from_pretrained("facebook/bart-large-mnli", encoder_layers=8, decoder_layers=8)<jupyter_output><empty_output><jupyter_text>Cool, now we can benchmark these configs against the baseline config. This time, instead of using the benchmarking script we will directly use the `PyTorchBenchmark` class. The class expects the argument `args` which has to be of type `PyTorchBenchmarkArguments` and optionally a list of configs.First, we define the `args` and give the different configurations appropriate model names. The model names must be in the same order as the configs that are directly passed to `PyTorchBenchMark`.If no `configs` are provided to `PyTorchBenchmark`, it is assumed that the model names `["bart-base", "bart-768-hid", "bart-8-head", "bart-10000-voc", "bart-8-lay"]` correspond to official model identifiers and their corresponding configs are loaded as was shown in the previous section.It is assumed that the model will be trained on half-precision, so we add the option `fp16=True` for the following benchmarks.<jupyter_code># define args
args = PyTorchBenchmarkArguments(models=["bart-base", "bart-768-hid", "bart-8-head", "bart-10000-voc", "bart-8-lay"],
no_speed=True,
no_inference=True,
training=True,
train_memory_csv_file="plots_pt/training_mem_fp16.csv",
save_to_csv=True,
env_info_csv_file="plots_pt/env.csv",
sequence_lengths=[64, 128, 256, 512],
batch_sizes=[8],
no_env_print=True,
fp16=True) # let's train on fp16
# create benchmark
benchmark = PyTorchBenchmark(configs=[config_baseline, config_768_hidden, config_8_heads, config_10000_vocab, config_8_layers], args=args)
# run benchmark
result = benchmark.run()<jupyter_output>1 / 5
2 / 5
3 / 5
4 / 5
5 / 5
==================== TRAIN - MEMORY - RESULTS ====================
--------------------------------------------------------------------------------
Model Name Batch Size Seq Length Memory in MB
--------------------------------------------------------------------------------
bart-base 8 64 2905
bart-base 8 128 3199
bart-base 8 256 5401
bart-base 8 512 11929
bart-768-hid 8 64 2441
bart-768-hid 8 128 2891
bart-768-hid 8 256 4963
bart-768-hid 8 512 10865
bart-8-head [...]<jupyter_text>Nice, let's plot the results again.<jupyter_code># plot graph and save as image
!python plot_csv_file.py --csv_file plots_pt/training_mem_fp16.csv --figure_png_file=plots_pt/training_mem_fp16.png --no_log_scale
# show image
from IPython.display import Image
Image('plots_pt/training_mem_fp16.png')<jupyter_output>2020-06-26 12:11:47.558303: I tensorflow/stream_executor/platform/default/dso_loader.cc:44] Successfully opened dynamic library libcudart.so.10.1<jupyter_text>As expected the model of the baseline config requires the most memory. It is interesting to see that the "bart-8-head" model initially requires more memory than `bart-10000-voc`, but then clearly outperforms `bart-10000-voc` at an input length of 512. Less surprising is that the "bart-8-lay" is by far the most memory-efficient model when reminding oneself that during the forward pass every layer has to store its activations for the backward pass.Alright, given the data above, let's say we narrow our candidates down to only the "bart-8-head" and "bart-8-lay" models. Let's compare these models again on training time.<jupyter_code># define args
args = PyTorchBenchmarkArguments(models=["bart-8-head", "bart-8-lay"],
no_inference=True,
training=True,
no_memory=True,
train_time_csv_file="plots_pt/training_speed_fp16.csv",
save_to_csv=True,
env_info_csv_file="plots_pt/env.csv",
sequence_lengths=[32, 128, 512],
batch_sizes=[8],
no_env_print=True,
repeat=1, # to make speed measurement faster but less accurate
no_multi_process=True, # google colab has problems with multi processing
fp16=True
)
# create benchmark
benchmark = PyTorchBenchmark(configs=[config_8_heads, config_8_layers], args=args)
# run benchmark
result = benchmark.run()<jupyter_output>1 / 2
2 / 2
==================== TRAIN - SPEED - RESULTS ====================
--------------------------------------------------------------------------------
Model Name Batch Size Seq Length Time in s
--------------------------------------------------------------------------------
bart-8-head 8 32 0.127
bart-8-head 8 128 0.398
bart-8-head 8 512 1.567
bart-8-lay 8 32 0.088
bart-8-lay 8 128 0.284
bart-8-lay 8 512 1.153
--------------------------------------------------------------------------------
Saving results to csv.<jupyter_text>The option `no_multi_process` disabled multi-processing here. This option should in general only be used for testing or debugging. Enabling multi-processing is crucial to ensure accurate memory consumption measurement, but is less important when only measuring speed. The main reason it is disabled here is that google colab sometimes raises "CUDA initialization" due to the notebook's environment. This problem does not arise when running benchmarks outside of a notebook.Alright, let's plot the last speed results as well.<jupyter_code># plot graph and save as image
!python plot_csv_file.py --csv_file plots_pt/training_speed_fp16.csv --figure_png_file=plots_pt/training_speed_fp16.png --no_log_scale --is_time
# show image
from IPython.display import Image
Image('plots_pt/training_speed_fp16.png')<jupyter_output>2020-06-26 12:13:17.849561: I tensorflow/stream_executor/platform/default/dso_loader.cc:44] Successfully opened dynamic library libcudart.so.10.1
|
AdaMix/notebooks/05-benchmark.ipynb/0
|
{
"file_path": "AdaMix/notebooks/05-benchmark.ipynb",
"repo_id": "AdaMix",
"token_count": 11981
}
| 43 |
# this is the process of uploading the updated models to s3. As I can't upload them directly to the correct orgs, this script shows how this is done
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
1. upload updated models to my account
transformers-cli upload -y wmt19-ru-en
transformers-cli upload -y wmt19-en-ru
transformers-cli upload -y wmt19-de-en
transformers-cli upload -y wmt19-en-de
transformers-cli upload -y wmt19-de-en-6-6-base
transformers-cli upload -y wmt19-de-en-6-6-big
transformers-cli upload -y wmt16-en-de-dist-12-1
transformers-cli upload -y wmt16-en-de-dist-6-1
transformers-cli upload -y wmt16-en-de-12-1
2. ask someone to move them to:
* to facebook: "wmt19-ru-en", "wmt19-en-ru", "wmt19-en-de", "wmt19-de-en"
* to allenai: "wmt16-en-de-dist-12-1", "wmt16-en-de-dist-6-1", "wmt16-en-de-12-1", "wmt19-de-en-6-6-base", "wmt19-de-en-6-6-big"
export b="s3://models.huggingface.co/bert"
stas_to_fb () {
src=$1
shift
aws s3 sync $b/stas/$src $b/facebook/$src $@
}
stas_to_allenai () {
src=$1
shift
aws s3 sync $b/stas/$src $b/allenai/$src $@
}
stas_to_fb wmt19-en-ru
stas_to_fb wmt19-ru-en
stas_to_fb wmt19-en-de
stas_to_fb wmt19-de-en
stas_to_allenai wmt16-en-de-dist-12-1
stas_to_allenai wmt16-en-de-dist-6-1
stas_to_allenai wmt16-en-de-6-1
stas_to_allenai wmt16-en-de-12-1
stas_to_allenai wmt19-de-en-6-6-base
stas_to_allenai wmt19-de-en-6-6-big
3. and then remove all these model files from my account
transformers-cli s3 rm wmt16-en-de-12-1/config.json
transformers-cli s3 rm wmt16-en-de-12-1/merges.txt
transformers-cli s3 rm wmt16-en-de-12-1/pytorch_model.bin
transformers-cli s3 rm wmt16-en-de-12-1/tokenizer_config.json
transformers-cli s3 rm wmt16-en-de-12-1/vocab-src.json
transformers-cli s3 rm wmt16-en-de-12-1/vocab-tgt.json
transformers-cli s3 rm wmt16-en-de-dist-12-1/config.json
transformers-cli s3 rm wmt16-en-de-dist-12-1/merges.txt
transformers-cli s3 rm wmt16-en-de-dist-12-1/pytorch_model.bin
transformers-cli s3 rm wmt16-en-de-dist-12-1/tokenizer_config.json
transformers-cli s3 rm wmt16-en-de-dist-12-1/vocab-src.json
transformers-cli s3 rm wmt16-en-de-dist-12-1/vocab-tgt.json
transformers-cli s3 rm wmt16-en-de-dist-6-1/config.json
transformers-cli s3 rm wmt16-en-de-dist-6-1/merges.txt
transformers-cli s3 rm wmt16-en-de-dist-6-1/pytorch_model.bin
transformers-cli s3 rm wmt16-en-de-dist-6-1/tokenizer_config.json
transformers-cli s3 rm wmt16-en-de-dist-6-1/vocab-src.json
transformers-cli s3 rm wmt16-en-de-dist-6-1/vocab-tgt.json
transformers-cli s3 rm wmt19-de-en-6-6-base/config.json
transformers-cli s3 rm wmt19-de-en-6-6-base/merges.txt
transformers-cli s3 rm wmt19-de-en-6-6-base/pytorch_model.bin
transformers-cli s3 rm wmt19-de-en-6-6-base/tokenizer_config.json
transformers-cli s3 rm wmt19-de-en-6-6-base/vocab-src.json
transformers-cli s3 rm wmt19-de-en-6-6-base/vocab-tgt.json
transformers-cli s3 rm wmt19-de-en-6-6-big/config.json
transformers-cli s3 rm wmt19-de-en-6-6-big/merges.txt
transformers-cli s3 rm wmt19-de-en-6-6-big/pytorch_model.bin
transformers-cli s3 rm wmt19-de-en-6-6-big/tokenizer_config.json
transformers-cli s3 rm wmt19-de-en-6-6-big/vocab-src.json
transformers-cli s3 rm wmt19-de-en-6-6-big/vocab-tgt.json
transformers-cli s3 rm wmt19-de-en/config.json
transformers-cli s3 rm wmt19-de-en/merges.txt
transformers-cli s3 rm wmt19-de-en/pytorch_model.bin
transformers-cli s3 rm wmt19-de-en/tokenizer_config.json
transformers-cli s3 rm wmt19-de-en/vocab-src.json
transformers-cli s3 rm wmt19-de-en/vocab-tgt.json
transformers-cli s3 rm wmt19-en-de/config.json
transformers-cli s3 rm wmt19-en-de/merges.txt
transformers-cli s3 rm wmt19-en-de/pytorch_model.bin
transformers-cli s3 rm wmt19-en-de/tokenizer_config.json
transformers-cli s3 rm wmt19-en-de/vocab-src.json
transformers-cli s3 rm wmt19-en-de/vocab-tgt.json
transformers-cli s3 rm wmt19-en-ru/config.json
transformers-cli s3 rm wmt19-en-ru/merges.txt
transformers-cli s3 rm wmt19-en-ru/pytorch_model.bin
transformers-cli s3 rm wmt19-en-ru/tokenizer_config.json
transformers-cli s3 rm wmt19-en-ru/vocab-src.json
transformers-cli s3 rm wmt19-en-ru/vocab-tgt.json
transformers-cli s3 rm wmt19-ru-en/config.json
transformers-cli s3 rm wmt19-ru-en/merges.txt
transformers-cli s3 rm wmt19-ru-en/pytorch_model.bin
transformers-cli s3 rm wmt19-ru-en/tokenizer_config.json
transformers-cli s3 rm wmt19-ru-en/vocab-src.json
transformers-cli s3 rm wmt19-ru-en/vocab-tgt.json
|
AdaMix/scripts/fsmt/s3-move.sh/0
|
{
"file_path": "AdaMix/scripts/fsmt/s3-move.sh",
"repo_id": "AdaMix",
"token_count": 2133
}
| 44 |
# This file is adapted from the AllenNLP library at https://github.com/allenai/allennlp
# Copyright 2020 The HuggingFace Team and the AllenNLP authors. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Utilities for working with the local dataset cache.
"""
import copy
import csv
import linecache
import os
import platform
import sys
from abc import ABC, abstractmethod
from collections import defaultdict, namedtuple
from datetime import datetime
from multiprocessing import Pipe, Process, Queue
from multiprocessing.connection import Connection
from typing import Callable, Iterable, List, NamedTuple, Optional, Union
from .. import AutoConfig, PretrainedConfig
from .. import __version__ as version
from ..file_utils import is_psutil_available, is_py3nvml_available, is_tf_available, is_torch_available
from ..utils import logging
from .benchmark_args_utils import BenchmarkArguments
if is_torch_available():
from torch.cuda import empty_cache as torch_empty_cache
if is_tf_available():
from tensorflow.python.eager import context as tf_context
if is_psutil_available():
import psutil
if is_py3nvml_available():
import py3nvml.py3nvml as nvml
if platform.system() == "Windows":
from signal import CTRL_C_EVENT as SIGKILL
else:
from signal import SIGKILL
logger = logging.get_logger(__name__) # pylint: disable=invalid-name
_is_memory_tracing_enabled = False
BenchmarkOutput = namedtuple(
"BenchmarkOutput",
[
"time_inference_result",
"memory_inference_result",
"time_train_result",
"memory_train_result",
"inference_summary",
"train_summary",
],
)
def separate_process_wrapper_fn(func: Callable[[], None], do_multi_processing: bool) -> Callable[[], None]:
"""
This function wraps another function into its own separated process. In order to ensure accurate memory
measurements it is important that the function is executed in a separate process
Args:
- `func`: (`callable`): function() -> ... generic function which will be executed in its own separate process
- `do_multi_processing`: (`bool`) Whether to run function on separate process or not
"""
def multi_process_func(*args, **kwargs):
# run function in an individual
# process to get correct memory
def wrapper_func(queue: Queue, *args):
try:
result = func(*args)
except Exception as e:
logger.error(e)
print(e)
result = "N/A"
queue.put(result)
queue = Queue()
p = Process(target=wrapper_func, args=[queue] + list(args))
p.start()
result = queue.get()
p.join()
return result
if do_multi_processing:
logger.info(f"Function {func} is executed in its own process...")
return multi_process_func
else:
return func
def is_memory_tracing_enabled():
global _is_memory_tracing_enabled
return _is_memory_tracing_enabled
class Frame(NamedTuple):
"""
`Frame` is a NamedTuple used to gather the current frame state. `Frame` has the following fields:
- 'filename' (string): Name of the file currently executed
- 'module' (string): Name of the module currently executed
- 'line_number' (int): Number of the line currently executed
- 'event' (string): Event that triggered the tracing (default will be "line")
- 'line_text' (string): Text of the line in the python script
"""
filename: str
module: str
line_number: int
event: str
line_text: str
class UsedMemoryState(NamedTuple):
"""
`UsedMemoryState` are named tuples with the following fields:
- 'frame': a `Frame` namedtuple (see below) storing information on the current tracing frame (current file,
location in current file)
- 'cpu_memory': CPU RSS memory state *before* executing the line
- 'gpu_memory': GPU used memory *before* executing the line (sum for all GPUs or for only `gpus_to_trace` if
provided)
"""
frame: Frame
cpu_memory: int
gpu_memory: int
class Memory(NamedTuple):
"""
`Memory` NamedTuple have a single field `bytes` and you can get a human readable str of the number of mega bytes by
calling `__repr__`
- `byte` (integer): number of bytes,
"""
bytes: int
def __repr__(self) -> str:
return str(bytes_to_mega_bytes(self.bytes))
class MemoryState(NamedTuple):
"""
`MemoryState` are namedtuples listing frame + CPU/GPU memory with the following fields:
- `frame` (`Frame`): the current frame (see above)
- `cpu`: CPU memory consumed at during the current frame as a `Memory` named tuple
- `gpu`: GPU memory consumed at during the current frame as a `Memory` named tuple
- `cpu_gpu`: CPU + GPU memory consumed at during the current frame as a `Memory` named tuple
"""
frame: Frame
cpu: Memory
gpu: Memory
cpu_gpu: Memory
class MemorySummary(NamedTuple):
"""
`MemorySummary` namedtuple otherwise with the fields:
- `sequential`: a list of `MemoryState` namedtuple (see below) computed from the provided `memory_trace` by
subtracting the memory after executing each line from the memory before executing said line.
- `cumulative`: a list of `MemoryState` namedtuple (see below) with cumulative increase in memory for each line
obtained by summing repeated memory increase for a line if it's executed several times. The list is sorted
from the frame with the largest memory consumption to the frame with the smallest (can be negative if memory
is released)
- `total`: total memory increase during the full tracing as a `Memory` named tuple (see below). Line with
memory release (negative consumption) are ignored if `ignore_released_memory` is `True` (default).
"""
sequential: List[MemoryState]
cumulative: List[MemoryState]
current: List[MemoryState]
total: Memory
MemoryTrace = List[UsedMemoryState]
def measure_peak_memory_cpu(function: Callable[[], None], interval=0.5, device_idx=None) -> int:
"""
measures peak cpu memory consumption of a given `function` running the function for at least interval seconds and
at most 20 * interval seconds. This function is heavily inspired by: `memory_usage` of the package
`memory_profiler`:
https://github.com/pythonprofilers/memory_profiler/blob/895c4ac7a08020d66ae001e24067da6dcea42451/memory_profiler.py#L239
Args:
- `function`: (`callable`): function() -> ... function without any arguments to measure for which to measure
the peak memory
- `interval`: (`float`, `optional`, defaults to `0.5`) interval in second for which to measure the memory usage
- `device_idx`: (`int`, `optional`, defaults to `None`) device id for which to measure gpu usage
Returns:
- `max_memory`: (`int`) consumed memory peak in Bytes
"""
def get_cpu_memory(process_id: int) -> int:
"""
measures current cpu memory usage of a given `process_id`
Args:
- `process_id`: (`int`) process_id for which to measure memory
Returns
- `memory`: (`int`) consumed memory in Bytes
"""
process = psutil.Process(process_id)
try:
meminfo_attr = "memory_info" if hasattr(process, "memory_info") else "get_memory_info"
memory = getattr(process, meminfo_attr)()[0]
except psutil.AccessDenied:
raise ValueError("Error with Psutil.")
return memory
if not is_psutil_available():
logger.warning(
"Psutil not installed, we won't log CPU memory usage. "
"Install Psutil (pip install psutil) to use CPU memory tracing."
)
max_memory = "N/A"
else:
class MemoryMeasureProcess(Process):
"""
`MemoryMeasureProcess` inherits from `Process` and overwrites its `run()` method. Used to measure the
memory usage of a process
"""
def __init__(self, process_id: int, child_connection: Connection, interval: float):
super().__init__()
self.process_id = process_id
self.interval = interval
self.connection = child_connection
self.num_measurements = 1
self.mem_usage = get_cpu_memory(self.process_id)
def run(self):
self.connection.send(0)
stop = False
while True:
self.mem_usage = max(self.mem_usage, get_cpu_memory(self.process_id))
self.num_measurements += 1
if stop:
break
stop = self.connection.poll(self.interval)
# send results to parent pipe
self.connection.send(self.mem_usage)
self.connection.send(self.num_measurements)
while True:
# create child, parent connection
child_connection, parent_connection = Pipe()
# instantiate process
mem_process = MemoryMeasureProcess(os.getpid(), child_connection, interval)
mem_process.start()
# wait until we get memory
parent_connection.recv()
try:
# execute function
function()
# start parent connection
parent_connection.send(0)
# receive memory and num measurements
max_memory = parent_connection.recv()
num_measurements = parent_connection.recv()
except Exception:
# kill process in a clean way
parent = psutil.Process(os.getpid())
for child in parent.children(recursive=True):
os.kill(child.pid, SIGKILL)
mem_process.join(0)
raise RuntimeError("Process killed. Error in Process")
# run process at least 20 * interval or until it finishes
mem_process.join(20 * interval)
if (num_measurements > 4) or (interval < 1e-6):
break
# reduce interval
interval /= 10
return max_memory
def start_memory_tracing(
modules_to_trace: Optional[Union[str, Iterable[str]]] = None,
modules_not_to_trace: Optional[Union[str, Iterable[str]]] = None,
events_to_trace: str = "line",
gpus_to_trace: Optional[List[int]] = None,
) -> MemoryTrace:
"""
Setup line-by-line tracing to record rss mem (RAM) at each line of a module or sub-module. See `./benchmark.py` for
usage examples. Current memory consumption is returned using psutil and in particular is the RSS memory "Resident
Set Size” (the non-swapped physical memory the process is using). See
https://psutil.readthedocs.io/en/latest/#psutil.Process.memory_info
Args:
- `modules_to_trace`: (None, string, list/tuple of string) if None, all events are recorded if string or list
of strings: only events from the listed module/sub-module will be recorded (e.g. 'fairseq' or
'transformers.models.gpt2.modeling_gpt2')
- `modules_not_to_trace`: (None, string, list/tuple of string) if None, no module is avoided if string or list
of strings: events from the listed module/sub-module will not be recorded (e.g. 'torch')
- `events_to_trace`: string or list of string of events to be recorded (see official python doc for
`sys.settrace` for the list of events) default to line
- `gpus_to_trace`: (optional list, default None) list of GPUs to trace. Default to tracing all GPUs
Return:
- `memory_trace` is a list of `UsedMemoryState` for each event (default each line of the traced script).
- `UsedMemoryState` are named tuples with the following fields:
- 'frame': a `Frame` namedtuple (see below) storing information on the current tracing frame (current
file, location in current file)
- 'cpu_memory': CPU RSS memory state *before* executing the line
- 'gpu_memory': GPU used memory *before* executing the line (sum for all GPUs or for only
`gpus_to_trace` if provided)
`Frame` is a namedtuple used by `UsedMemoryState` to list the current frame state. `Frame` has the following
fields: - 'filename' (string): Name of the file currently executed - 'module' (string): Name of the module
currently executed - 'line_number' (int): Number of the line currently executed - 'event' (string): Event that
triggered the tracing (default will be "line") - 'line_text' (string): Text of the line in the python script
"""
if is_psutil_available():
process = psutil.Process(os.getpid())
else:
logger.warning(
"Psutil not installed, we won't log CPU memory usage. "
"Install psutil (pip install psutil) to use CPU memory tracing."
)
process = None
if is_py3nvml_available():
try:
nvml.nvmlInit()
devices = list(range(nvml.nvmlDeviceGetCount())) if gpus_to_trace is None else gpus_to_trace
nvml.nvmlShutdown()
except (OSError, nvml.NVMLError):
logger.warning("Error while initializing communication with GPU. " "We won't perform GPU memory tracing.")
log_gpu = False
else:
log_gpu = is_torch_available() or is_tf_available()
else:
logger.warning(
"py3nvml not installed, we won't log GPU memory usage. "
"Install py3nvml (pip install py3nvml) to use GPU memory tracing."
)
log_gpu = False
memory_trace = []
def traceit(frame, event, args):
"""
Tracing method executed before running each line in a module or sub-module Record memory allocated in a list
with debugging information
"""
global _is_memory_tracing_enabled
if not _is_memory_tracing_enabled:
return traceit
# Filter events
if events_to_trace is not None:
if isinstance(events_to_trace, str) and event != events_to_trace:
return traceit
elif isinstance(events_to_trace, (list, tuple)) and event not in events_to_trace:
return traceit
if "__name__" not in frame.f_globals:
return traceit
# Filter modules
name = frame.f_globals["__name__"]
if not isinstance(name, str):
return traceit
else:
# Filter whitelist of modules to trace
if modules_to_trace is not None:
if isinstance(modules_to_trace, str) and modules_to_trace not in name:
return traceit
elif isinstance(modules_to_trace, (list, tuple)) and all(m not in name for m in modules_to_trace):
return traceit
# Filter blacklist of modules not to trace
if modules_not_to_trace is not None:
if isinstance(modules_not_to_trace, str) and modules_not_to_trace in name:
return traceit
elif isinstance(modules_not_to_trace, (list, tuple)) and any(m in name for m in modules_not_to_trace):
return traceit
# Record current tracing state (file, location in file...)
lineno = frame.f_lineno
filename = frame.f_globals["__file__"]
if filename.endswith(".pyc") or filename.endswith(".pyo"):
filename = filename[:-1]
line = linecache.getline(filename, lineno).rstrip()
traced_state = Frame(filename, name, lineno, event, line)
# Record current memory state (rss memory) and compute difference with previous memory state
cpu_mem = 0
if process is not None:
mem = process.memory_info()
cpu_mem = mem.rss
gpu_mem = 0
if log_gpu:
# Clear GPU caches
if is_torch_available():
torch_empty_cache()
if is_tf_available():
tf_context.context()._clear_caches() # See https://github.com/tensorflow/tensorflow/issues/20218#issuecomment-416771802
# Sum used memory for all GPUs
nvml.nvmlInit()
for i in devices:
handle = nvml.nvmlDeviceGetHandleByIndex(i)
meminfo = nvml.nvmlDeviceGetMemoryInfo(handle)
gpu_mem += meminfo.used
nvml.nvmlShutdown()
mem_state = UsedMemoryState(traced_state, cpu_mem, gpu_mem)
memory_trace.append(mem_state)
return traceit
sys.settrace(traceit)
global _is_memory_tracing_enabled
_is_memory_tracing_enabled = True
return memory_trace
def stop_memory_tracing(
memory_trace: Optional[MemoryTrace] = None, ignore_released_memory: bool = True
) -> Optional[MemorySummary]:
"""
Stop memory tracing cleanly and return a summary of the memory trace if a trace is given.
Args:
`memory_trace` (optional output of start_memory_tracing, default: None):
memory trace to convert in summary
`ignore_released_memory` (boolean, default: None):
if True we only sum memory increase to compute total memory
Return:
- None if `memory_trace` is None
- `MemorySummary` namedtuple otherwise with the fields:
- `sequential`: a list of `MemoryState` namedtuple (see below) computed from the provided `memory_trace` by
subtracting the memory after executing each line from the memory before executing said line.
- `cumulative`: a list of `MemoryState` namedtuple (see below) with cumulative increase in memory for each
line obtained by summing repeated memory increase for a line if it's executed several times. The list is
sorted from the frame with the largest memory consumption to the frame with the smallest (can be negative
if memory is released)
- `total`: total memory increase during the full tracing as a `Memory` named tuple (see below). Line with
memory release (negative consumption) are ignored if `ignore_released_memory` is `True` (default).
`Memory` named tuple have fields
- `byte` (integer): number of bytes,
- `string` (string): same as human readable string (ex: "3.5MB")
`Frame` are namedtuple used to list the current frame state and have the following fields:
- 'filename' (string): Name of the file currently executed
- 'module' (string): Name of the module currently executed
- 'line_number' (int): Number of the line currently executed
- 'event' (string): Event that triggered the tracing (default will be "line")
- 'line_text' (string): Text of the line in the python script
`MemoryState` are namedtuples listing frame + CPU/GPU memory with the following fields:
- `frame` (`Frame`): the current frame (see above)
- `cpu`: CPU memory consumed at during the current frame as a `Memory` named tuple
- `gpu`: GPU memory consumed at during the current frame as a `Memory` named tuple
- `cpu_gpu`: CPU + GPU memory consumed at during the current frame as a `Memory` named tuple
"""
global _is_memory_tracing_enabled
_is_memory_tracing_enabled = False
if memory_trace is not None and len(memory_trace) > 1:
memory_diff_trace = []
memory_curr_trace = []
cumulative_memory_dict = defaultdict(lambda: [0, 0, 0])
for (
(frame, cpu_mem, gpu_mem),
(next_frame, next_cpu_mem, next_gpu_mem),
) in zip(memory_trace[:-1], memory_trace[1:]):
cpu_mem_inc = next_cpu_mem - cpu_mem
gpu_mem_inc = next_gpu_mem - gpu_mem
cpu_gpu_mem_inc = cpu_mem_inc + gpu_mem_inc
memory_diff_trace.append(
MemoryState(
frame=frame,
cpu=Memory(cpu_mem_inc),
gpu=Memory(gpu_mem_inc),
cpu_gpu=Memory(cpu_gpu_mem_inc),
)
)
memory_curr_trace.append(
MemoryState(
frame=frame,
cpu=Memory(next_cpu_mem),
gpu=Memory(next_gpu_mem),
cpu_gpu=Memory(next_gpu_mem + next_cpu_mem),
)
)
cumulative_memory_dict[frame][0] += cpu_mem_inc
cumulative_memory_dict[frame][1] += gpu_mem_inc
cumulative_memory_dict[frame][2] += cpu_gpu_mem_inc
cumulative_memory = sorted(
list(cumulative_memory_dict.items()), key=lambda x: x[1][2], reverse=True
) # order by the total CPU + GPU memory increase
cumulative_memory = list(
MemoryState(
frame=frame,
cpu=Memory(cpu_mem_inc),
gpu=Memory(gpu_mem_inc),
cpu_gpu=Memory(cpu_gpu_mem_inc),
)
for frame, (cpu_mem_inc, gpu_mem_inc, cpu_gpu_mem_inc) in cumulative_memory
)
memory_curr_trace = sorted(memory_curr_trace, key=lambda x: x.cpu_gpu.bytes, reverse=True)
if ignore_released_memory:
total_memory = sum(max(0, step_trace.cpu_gpu.bytes) for step_trace in memory_diff_trace)
else:
total_memory = sum(step_trace.cpu_gpu.bytes for step_trace in memory_diff_trace)
total_memory = Memory(total_memory)
return MemorySummary(
sequential=memory_diff_trace,
cumulative=cumulative_memory,
current=memory_curr_trace,
total=total_memory,
)
return None
def bytes_to_mega_bytes(memory_amount: int) -> int:
"""Utility to convert a number of bytes (int) into a number of mega bytes (int)"""
return memory_amount >> 20
class Benchmark(ABC):
"""
Benchmarks is a simple but feature-complete benchmarking script to compare memory and time performance of models in
Transformers.
"""
args: BenchmarkArguments
configs: PretrainedConfig
framework: str
def __init__(self, args: BenchmarkArguments = None, configs: PretrainedConfig = None):
self.args = args
if configs is None:
self.config_dict = {
model_name: AutoConfig.from_pretrained(model_name) for model_name in self.args.model_names
}
else:
self.config_dict = {model_name: config for model_name, config in zip(self.args.model_names, configs)}
if self.args.memory and os.getenv("TRANSFORMERS_USE_MULTIPROCESSING") == 0:
logger.warning(
"Memory consumption will not be measured accurately if `args.multi_process` is set to `False.` The flag 'TRANSFORMERS_USE_MULTIPROCESSING' should only be disabled for debugging / testing."
)
self._print_fn = None
self._framework_version = None
self._environment_info = None
@property
def print_fn(self):
if self._print_fn is None:
if self.args.log_print:
def print_and_log(*args):
with open(self.args.log_filename, "a") as log_file:
log_file.write("".join(args) + "\n")
print(*args)
self._print_fn = print_and_log
else:
self._print_fn = print
return self._print_fn
@property
@abstractmethod
def framework_version(self):
pass
@abstractmethod
def _inference_speed(self, model_name: str, batch_size: int, sequence_length: int) -> float:
pass
@abstractmethod
def _train_speed(self, model_name: str, batch_size: int, sequence_length: int) -> float:
pass
@abstractmethod
def _inference_memory(
self, model_name: str, batch_size: int, sequence_length: int
) -> [Memory, Optional[MemorySummary]]:
pass
@abstractmethod
def _train_memory(
self, model_name: str, batch_size: int, sequence_length: int
) -> [Memory, Optional[MemorySummary]]:
pass
def inference_speed(self, *args, **kwargs) -> float:
return separate_process_wrapper_fn(self._inference_speed, self.args.do_multi_processing)(*args, **kwargs)
def train_speed(self, *args, **kwargs) -> float:
return separate_process_wrapper_fn(self._train_speed, self.args.do_multi_processing)(*args, **kwargs)
def inference_memory(self, *args, **kwargs) -> [Memory, Optional[MemorySummary]]:
return separate_process_wrapper_fn(self._inference_memory, self.args.do_multi_processing)(*args, **kwargs)
def train_memory(self, *args, **kwargs) -> [Memory, Optional[MemorySummary]]:
return separate_process_wrapper_fn(self._train_memory, self.args.do_multi_processing)(*args, **kwargs)
def run(self):
result_dict = {model_name: {} for model_name in self.args.model_names}
inference_result_time = copy.deepcopy(result_dict)
inference_result_memory = copy.deepcopy(result_dict)
train_result_time = copy.deepcopy(result_dict)
train_result_memory = copy.deepcopy(result_dict)
for c, model_name in enumerate(self.args.model_names):
self.print_fn(f"{c + 1} / {len(self.args.model_names)}")
model_dict = {
"bs": self.args.batch_sizes,
"ss": self.args.sequence_lengths,
"result": {i: {} for i in self.args.batch_sizes},
}
inference_result_time[model_name] = copy.deepcopy(model_dict)
inference_result_memory[model_name] = copy.deepcopy(model_dict)
train_result_time[model_name] = copy.deepcopy(model_dict)
train_result_memory[model_name] = copy.deepcopy(model_dict)
inference_summary = train_summary = None
for batch_size in self.args.batch_sizes:
for sequence_length in self.args.sequence_lengths:
if self.args.inference:
if self.args.memory:
memory, inference_summary = self.inference_memory(model_name, batch_size, sequence_length)
inference_result_memory[model_name]["result"][batch_size][sequence_length] = memory
if self.args.speed:
time = self.inference_speed(model_name, batch_size, sequence_length)
inference_result_time[model_name]["result"][batch_size][sequence_length] = time
if self.args.training:
if self.args.memory:
memory, train_summary = self.train_memory(model_name, batch_size, sequence_length)
train_result_memory[model_name]["result"][batch_size][sequence_length] = memory
if self.args.speed:
time = self.train_speed(model_name, batch_size, sequence_length)
train_result_time[model_name]["result"][batch_size][sequence_length] = time
if self.args.inference:
if self.args.speed:
self.print_fn("\n" + 20 * "=" + ("INFERENCE - SPEED - RESULT").center(40) + 20 * "=")
self.print_results(inference_result_time, type_label="Time in s")
self.save_to_csv(inference_result_time, self.args.inference_time_csv_file)
if self.args.is_tpu:
self.print_fn(
"TPU was used for inference. Note that the time after compilation stabilized (after ~10 inferences model.forward(..) calls) was measured."
)
if self.args.memory:
self.print_fn("\n" + 20 * "=" + ("INFERENCE - MEMORY - RESULT").center(40) + 20 * "=")
self.print_results(inference_result_memory, type_label="Memory in MB")
self.save_to_csv(inference_result_memory, self.args.inference_memory_csv_file)
if self.args.trace_memory_line_by_line:
self.print_fn("\n" + 20 * "=" + ("INFERENCE - MEMOMRY - LINE BY LINE - SUMMARY").center(40) + 20 * "=")
self.print_memory_trace_statistics(inference_summary)
if self.args.training:
if self.args.speed:
self.print_fn("\n" + 20 * "=" + ("TRAIN - SPEED - RESULTS").center(40) + 20 * "=")
self.print_results(train_result_time, "Time in s")
self.save_to_csv(train_result_time, self.args.train_time_csv_file)
if self.args.is_tpu:
self.print_fn(
"TPU was used for training. Note that the time after compilation stabilized (after ~10 train loss=model.forward(...) + loss.backward() calls) was measured."
)
if self.args.memory:
self.print_fn("\n" + 20 * "=" + ("TRAIN - MEMORY - RESULTS").center(40) + 20 * "=")
self.print_results(train_result_memory, type_label="Memory in MB")
self.save_to_csv(train_result_memory, self.args.train_memory_csv_file)
if self.args.trace_memory_line_by_line:
self.print_fn("\n" + 20 * "=" + ("TRAIN - MEMOMRY - LINE BY LINE - SUMMARY").center(40) + 20 * "=")
self.print_memory_trace_statistics(train_summary)
if self.args.env_print:
self.print_fn("\n" + 20 * "=" + ("ENVIRONMENT INFORMATION").center(40) + 20 * "=")
self.print_fn(
"\n".join(["- {}: {}".format(prop, val) for prop, val in self.environment_info.items()]) + "\n"
)
if self.args.save_to_csv:
with open(self.args.env_info_csv_file, mode="w", newline="") as csv_file:
writer = csv.writer(csv_file)
for key, value in self.environment_info.items():
writer.writerow([key, value])
return BenchmarkOutput(
inference_result_time,
inference_result_memory,
train_result_time,
train_result_memory,
inference_summary,
train_summary,
)
@property
def environment_info(self):
if self._environment_info is None:
info = {}
info["transformers_version"] = version
info["framework"] = self.framework
if self.framework == "PyTorch":
info["use_torchscript"] = self.args.torchscript
if self.framework == "TensorFlow":
info["eager_mode"] = self.args.eager_mode
info["use_xla"] = self.args.use_xla
info["framework_version"] = self.framework_version
info["python_version"] = platform.python_version()
info["system"] = platform.system()
info["cpu"] = platform.processor()
info["architecture"] = platform.architecture()[0]
info["date"] = datetime.date(datetime.now())
info["time"] = datetime.time(datetime.now())
info["fp16"] = self.args.fp16
info["use_multiprocessing"] = self.args.do_multi_processing
info["only_pretrain_model"] = self.args.only_pretrain_model
if is_psutil_available():
info["cpu_ram_mb"] = bytes_to_mega_bytes(psutil.virtual_memory().total)
else:
logger.warning(
"Psutil not installed, we won't log available CPU memory."
"Install psutil (pip install psutil) to log available CPU memory."
)
info["cpu_ram_mb"] = "N/A"
info["use_gpu"] = self.args.is_gpu
if self.args.is_gpu:
info["num_gpus"] = 1 # TODO(PVP) Currently only single GPU is supported
if is_py3nvml_available():
nvml.nvmlInit()
handle = nvml.nvmlDeviceGetHandleByIndex(self.args.device_idx)
info["gpu"] = nvml.nvmlDeviceGetName(handle)
info["gpu_ram_mb"] = bytes_to_mega_bytes(nvml.nvmlDeviceGetMemoryInfo(handle).total)
info["gpu_power_watts"] = nvml.nvmlDeviceGetPowerManagementLimit(handle) / 1000
info["gpu_performance_state"] = nvml.nvmlDeviceGetPerformanceState(handle)
nvml.nvmlShutdown()
else:
logger.warning(
"py3nvml not installed, we won't log GPU memory usage. "
"Install py3nvml (pip install py3nvml) to log information about GPU."
)
info["gpu"] = "N/A"
info["gpu_ram_mb"] = "N/A"
info["gpu_power_watts"] = "N/A"
info["gpu_performance_state"] = "N/A"
info["use_tpu"] = self.args.is_tpu
# TODO(PVP): See if we can add more information about TPU
# see: https://github.com/pytorch/xla/issues/2180
self._environment_info = info
return self._environment_info
def print_results(self, result_dict, type_label):
self.print_fn(80 * "-")
self.print_fn(
"Model Name".center(30) + "Batch Size".center(15) + "Seq Length".center(15) + type_label.center(15)
)
self.print_fn(80 * "-")
for model_name in self.args.model_names:
for batch_size in result_dict[model_name]["bs"]:
for sequence_length in result_dict[model_name]["ss"]:
result = result_dict[model_name]["result"][batch_size][sequence_length]
if isinstance(result, float):
result = round(1000 * result) / 1000
result = "< 0.001" if result == 0.0 else str(result)
else:
result = str(result)
self.print_fn(
model_name[:30].center(30) + str(batch_size).center(15),
str(sequence_length).center(15),
result.center(15),
)
self.print_fn(80 * "-")
def print_memory_trace_statistics(self, summary: MemorySummary):
self.print_fn(
"\nLine by line memory consumption:\n"
+ "\n".join(
f"{state.frame.filename}:{state.frame.line_number}: mem {state.cpu_gpu}: {state.frame.line_text}"
for state in summary.sequential
)
)
self.print_fn(
"\nLines with top memory consumption:\n"
+ "\n".join(
f"=> {state.frame.filename}:{state.frame.line_number}: mem {state.cpu_gpu}: {state.frame.line_text}"
for state in summary.cumulative[:6]
)
)
self.print_fn(
"\nLines with lowest memory consumption:\n"
+ "\n".join(
f"=> {state.frame.filename}:{state.frame.line_number}: mem {state.cpu_gpu}: {state.frame.line_text}"
for state in summary.cumulative[-6:]
)
)
self.print_fn(f"\nTotal memory increase: {summary.total}")
def save_to_csv(self, result_dict, filename):
if not self.args.save_to_csv:
return
self.print_fn("Saving results to csv.")
with open(filename, mode="w") as csv_file:
assert len(self.args.model_names) > 0, "At least 1 model should be defined, but got {}".format(
self.model_names
)
fieldnames = ["model", "batch_size", "sequence_length"]
writer = csv.DictWriter(csv_file, fieldnames=fieldnames + ["result"])
writer.writeheader()
for model_name in self.args.model_names:
result_dict_model = result_dict[model_name]["result"]
for bs in result_dict_model:
for ss in result_dict_model[bs]:
result_model = result_dict_model[bs][ss]
writer.writerow(
{
"model": model_name,
"batch_size": bs,
"sequence_length": ss,
"result": ("{}" if not isinstance(result_model, float) else "{:.4f}").format(
result_model
),
}
)
|
AdaMix/src/transformers/benchmark/benchmark_utils.py/0
|
{
"file_path": "AdaMix/src/transformers/benchmark/benchmark_utils.py",
"repo_id": "AdaMix",
"token_count": 16379
}
| 45 |
# coding=utf-8
# Copyright 2018 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Convert slow tokenizers checkpoints in fast (serialization format of the `tokenizers` library) """
import argparse
import os
import transformers
from .convert_slow_tokenizer import SLOW_TO_FAST_CONVERTERS
from .utils import logging
logging.set_verbosity_info()
logger = logging.get_logger(__name__)
TOKENIZER_CLASSES = {name: getattr(transformers, name + "Fast") for name in SLOW_TO_FAST_CONVERTERS}
def convert_slow_checkpoint_to_fast(tokenizer_name, checkpoint_name, dump_path, force_download):
if tokenizer_name is not None and tokenizer_name not in TOKENIZER_CLASSES:
raise ValueError("Unrecognized tokenizer name, should be one of {}.".format(list(TOKENIZER_CLASSES.keys())))
if tokenizer_name is None:
tokenizer_names = TOKENIZER_CLASSES
else:
tokenizer_names = {tokenizer_name: getattr(transformers, tokenizer_name + "Fast")}
logger.info(f"Loading tokenizer classes: {tokenizer_names}")
for tokenizer_name in tokenizer_names:
tokenizer_class = TOKENIZER_CLASSES[tokenizer_name]
add_prefix = True
if checkpoint_name is None:
checkpoint_names = list(tokenizer_class.max_model_input_sizes.keys())
else:
checkpoint_names = [checkpoint_name]
logger.info(f"For tokenizer {tokenizer_class.__class__.__name__} loading checkpoints: {checkpoint_names}")
for checkpoint in checkpoint_names:
logger.info(f"Loading {tokenizer_class.__class__.__name__} {checkpoint}")
# Load tokenizer
tokenizer = tokenizer_class.from_pretrained(checkpoint, force_download=force_download)
# Save fast tokenizer
logger.info(
"Save fast tokenizer to {} with prefix {} add_prefix {}".format(dump_path, checkpoint, add_prefix)
)
# For organization names we create sub-directories
if "/" in checkpoint:
checkpoint_directory, checkpoint_prefix_name = checkpoint.split("/")
dump_path_full = os.path.join(dump_path, checkpoint_directory)
elif add_prefix:
checkpoint_prefix_name = checkpoint
dump_path_full = dump_path
else:
checkpoint_prefix_name = None
dump_path_full = dump_path
logger.info(
"=> {} with prefix {}, add_prefix {}".format(dump_path_full, checkpoint_prefix_name, add_prefix)
)
if checkpoint in list(tokenizer.pretrained_vocab_files_map.values())[0]:
file_path = list(tokenizer.pretrained_vocab_files_map.values())[0][checkpoint]
next_char = file_path.split(checkpoint)[-1][0]
if next_char == "/":
dump_path_full = os.path.join(dump_path_full, checkpoint_prefix_name)
checkpoint_prefix_name = None
logger.info(
"=> {} with prefix {}, add_prefix {}".format(dump_path_full, checkpoint_prefix_name, add_prefix)
)
file_names = tokenizer.save_pretrained(
dump_path_full, legacy_format=False, filename_prefix=checkpoint_prefix_name
)
logger.info("=> File names {}".format(file_names))
for file_name in file_names:
if not file_name.endswith("tokenizer.json"):
os.remove(file_name)
logger.info("=> removing {}".format(file_name))
if __name__ == "__main__":
parser = argparse.ArgumentParser()
# Required parameters
parser.add_argument(
"--dump_path", default=None, type=str, required=True, help="Path to output generated fast tokenizer files."
)
parser.add_argument(
"--tokenizer_name",
default=None,
type=str,
help="Optional tokenizer type selected in the list of {}. If not given, will download and convert all the checkpoints from AWS.".format(
list(TOKENIZER_CLASSES.keys())
),
)
parser.add_argument(
"--checkpoint_name",
default=None,
type=str,
help="Optional checkpoint name. If not given, will download and convert the canonical checkpoints from AWS.",
)
parser.add_argument(
"--force_download",
action="store_true",
help="Re-download checkpoints.",
)
args = parser.parse_args()
convert_slow_checkpoint_to_fast(args.tokenizer_name, args.checkpoint_name, args.dump_path, args.force_download)
|
AdaMix/src/transformers/convert_slow_tokenizers_checkpoints_to_fast.py/0
|
{
"file_path": "AdaMix/src/transformers/convert_slow_tokenizers_checkpoints_to_fast.py",
"repo_id": "AdaMix",
"token_count": 2078
}
| 46 |
# coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import numpy as np
import tensorflow as tf
from .utils import logging
logger = logging.get_logger(__name__)
class TFGenerationMixin:
"""
A class containing all of the functions supporting generation, to be used as a mixin in
:class:`~transformers.TFPreTrainedModel`.
"""
def prepare_inputs_for_generation(self, inputs, **kwargs):
"""
Implement in subclasses of :class:`~transformers.TFPreTrainedModel` for custom behavior to prepare inputs in
the generate method.
"""
return {"input_ids": inputs}
def _use_cache(self, outputs, use_cache):
"""During generation, decide whether to pass the `past` variable to the next forward pass."""
use_cache = getattr(self.config, "use_cache", False)
if len(outputs) <= 1 or use_cache is False:
return False
if hasattr(self.config, "mem_len") and self.config.mem_len == 0:
return False
return True
def generate(
self,
input_ids=None,
max_length=None,
min_length=None,
do_sample=None,
early_stopping=None,
num_beams=None,
temperature=None,
top_k=None,
top_p=None,
repetition_penalty=None,
bad_words_ids=None,
bos_token_id=None,
pad_token_id=None,
eos_token_id=None,
length_penalty=None,
no_repeat_ngram_size=None,
num_return_sequences=None,
attention_mask=None,
decoder_start_token_id=None,
use_cache=None,
forced_bos_token_id=None,
forced_eos_token_id=None,
):
r"""
Generates sequences for models with a language modeling head. The method currently supports greedy decoding,
beam-search decoding, sampling with temperature, sampling with top-k or nucleus sampling.
Adapted in part from `Facebook's XLM beam search code
<https://github.com/facebookresearch/XLM/blob/9e6f6814d17be4fe5b15f2e6c43eb2b2d76daeb4/src/model/transformer.py#L529>`__.
Apart from :obj:`input_ids` and :obj:`attention_mask`, all the arguments below will default to the value of the
attribute of the same name inside the :class:`~transformers.PretrainedConfig` of the model. The default values
indicated are the default values of those config.
Most of these parameters are explained in more detail in `this blog post
<https://huggingface.co/blog/how-to-generate>`__.
Parameters:
input_ids (:obj:`tf.Tensor` of :obj:`dtype=tf.int32` and shape :obj:`(batch_size, sequence_length)`, `optional`):
The sequence used as a prompt for the generation. If :obj:`None` the method initializes it as an empty
:obj:`tf.Tensor` of shape :obj:`(1,)`.
max_length (:obj:`int`, `optional`, defaults to 20):
The maximum length of the sequence to be generated.
min_length (:obj:`int`, `optional`, defaults to 10):
The minimum length of the sequence to be generated.
do_sample (:obj:`bool`, `optional`, defaults to :obj:`False`):
Whether or not to use sampling ; use greedy decoding otherwise.
early_stopping (:obj:`bool`, `optional`, defaults to :obj:`False`):
Whether to stop the beam search when at least ``num_beams`` sentences are finished per batch or not.
num_beams (:obj:`int`, `optional`, defaults to 1):
Number of beams for beam search. 1 means no beam search.
temperature (:obj:`float`, `optional`, defaults to 1.0):
The value used to module the next token probabilities.
top_k (:obj:`int`, `optional`, defaults to 50):
The number of highest probability vocabulary tokens to keep for top-k-filtering.
top_p (:obj:`float`, `optional`, defaults to 1.0):
If set to float < 1, only the most probable tokens with probabilities that add up to ``top_p`` or
higher are kept for generation.
repetition_penalty (:obj:`float`, `optional`, defaults to 1.0):
The parameter for repetition penalty. 1.0 means no penalty. See `this paper
<https://arxiv.org/pdf/1909.05858.pdf>`__ for more details.
pad_token_id (:obj:`int`, `optional`):
The id of the `padding` token.
bos_token_id (:obj:`int`, `optional`):
The id of the `beginning-of-sequence` token.
eos_token_id (:obj:`int`, `optional`):
The id of the `end-of-sequence` token.
length_penalty (:obj:`float`, `optional`, defaults to 1.0):
Exponential penalty to the length. 1.0 means no penalty.
Set to values < 1.0 in order to encourage the model to generate shorter sequences, to a value > 1.0 in
order to encourage the model to produce longer sequences.
no_repeat_ngram_size (:obj:`int`, `optional`, defaults to 0):
If set to int > 0, all ngrams of that size can only occur once.
bad_words_ids(:obj:`List[int]`, `optional`):
List of token ids that are not allowed to be generated. In order to get the tokens of the words that
should not appear in the generated text, use :obj:`tokenizer.encode(bad_word, add_prefix_space=True)`.
num_return_sequences(:obj:`int`, `optional`, defaults to 1):
The number of independently computed returned sequences for each element in the batch.
attention_mask (:obj:`tf.Tensor` of :obj:`dtype=tf.int32` and shape :obj:`(batch_size, sequence_length)`, `optional`):
Mask to avoid performing attention on padding token indices. Mask values are in ``[0, 1]``, 1 for
tokens that are not masked, and 0 for masked tokens.
If not provided, will default to a tensor the same shape as :obj:`input_ids` that masks the pad token.
`What are attention masks? <../glossary.html#attention-mask>`__
decoder_start_token_id (:obj:`int`, `optional`):
If an encoder-decoder model starts decoding with a different token than `bos`, the id of that token.
use_cache: (:obj:`bool`, `optional`, defaults to :obj:`True`):
Whether or not the model should use the past last key/values attentions (if applicable to the model) to
speed up decoding.
forced_bos_token_id (:obj:`int`, `optional`):
The id of the token to force as the first generated token after the :obj:`decoder_start_token_id`.
Useful for multilingual models like :doc:`mBART <../model_doc/mbart>` where the first generated token
needs to be the target language token.
forced_eos_token_id (:obj:`int`, `optional`):
The id of the token to force as the last generated token when :obj:`max_length` is reached.
model_specific_kwargs:
Additional model specific kwargs will be forwarded to the :obj:`forward` function of the model.
Return:
:obj:`tf.Tensor` of :obj:`dtype=tf.int32` and shape :obj:`(batch_size * num_return_sequences,
sequence_length)`: The generated sequences. The second dimension (sequence_length) is either equal to
:obj:`max_length` or shorter if all batches finished early due to the :obj:`eos_token_id`.
Examples::
tokenizer = AutoTokenizer.from_pretrained('distilgpt2') # Initialize tokenizer
model = TFAutoModelWithLMHead.from_pretrained('distilgpt2') # Download model and configuration from huggingface.co and cache.
outputs = model.generate(max_length=40) # do greedy decoding
print('Generated: {}'.format(tokenizer.decode(outputs[0], skip_special_tokens=True)))
tokenizer = AutoTokenizer.from_pretrained('openai-gpt') # Initialize tokenizer
model = TFAutoModelWithLMHead.from_pretrained('openai-gpt') # Download model and configuration from huggingface.co and cache.
input_context = 'The dog'
input_ids = tokenizer.encode(input_context, return_tensors='tf') # encode input context
outputs = model.generate(input_ids=input_ids, num_beams=5, num_return_sequences=3, temperature=1.5) # generate 3 independent sequences using beam search decoding (5 beams) with sampling from initial context 'The dog'
for i in range(3): # 3 output sequences were generated
print('Generated {}: {}'.format(i, tokenizer.decode(outputs[i], skip_special_tokens=True)))
tokenizer = AutoTokenizer.from_pretrained('distilgpt2') # Initialize tokenizer
model = TFAutoModelWithLMHead.from_pretrained('distilgpt2') # Download model and configuration from huggingface.co and cache.
input_context = 'The dog'
input_ids = tokenizer.encode(input_context, return_tensors='tf') # encode input context
outputs = model.generate(input_ids=input_ids, max_length=40, temperature=0.7, num_return_sequences=3, do_sample=True) # generate 3 candidates using sampling
for i in range(3): # 3 output sequences were generated
print('Generated {}: {}'.format(i, tokenizer.decode(outputs[i], skip_special_tokens=True)))
tokenizer = AutoTokenizer.from_pretrained('ctrl') # Initialize tokenizer
model = TFAutoModelWithLMHead.from_pretrained('ctrl') # Download model and configuration from huggingface.co and cache.
input_context = 'Legal My neighbor is' # "Legal" is one of the control codes for ctrl
input_ids = tokenizer.encode(input_context, return_tensors='tf') # encode input context
outputs = model.generate(input_ids=input_ids, max_length=50, temperature=0.7, repetition_penalty=1.2) # generate sequences
print('Generated: {}'.format(tokenizer.decode(outputs[0], skip_special_tokens=True)))
tokenizer = AutoTokenizer.from_pretrained('gpt2') # Initialize tokenizer
model = TFAutoModelWithLMHead.from_pretrained('gpt2') # Download model and configuration from huggingface.co and cache.
input_context = 'My cute dog'
bad_words_ids = [tokenizer.encode(bad_word, add_prefix_space=True) for bad_word in ['idiot', 'stupid', 'shut up']]
input_ids = tokenizer.encode(input_context, return_tensors='tf') # encode input context
outputs = model.generate(input_ids=input_ids, max_length=100, do_sample=True, bad_words_ids=bad_words_ids) # generate sequences without allowing bad_words to be generated
"""
# We cannot generate if the model does not have a LM head
if self.get_output_embeddings() is None:
raise AttributeError(
"You tried to generate sequences with a model that does not have a LM Head."
"Please use another model class (e.g. `TFOpenAIGPTLMHeadModel`, `TFXLNetLMHeadModel`, `TFGPT2LMHeadModel`, `TFCTRLLMHeadModel`, `TFT5ForConditionalGeneration`, `TFTransfoXLLMHeadModel`)"
)
max_length = max_length if max_length is not None else self.config.max_length
min_length = min_length if min_length is not None else self.config.min_length
do_sample = do_sample if do_sample is not None else self.config.do_sample
early_stopping = early_stopping if early_stopping is not None else self.config.early_stopping
num_beams = num_beams if num_beams is not None else self.config.num_beams
temperature = temperature if temperature is not None else self.config.temperature
top_k = top_k if top_k is not None else self.config.top_k
top_p = top_p if top_p is not None else self.config.top_p
repetition_penalty = repetition_penalty if repetition_penalty is not None else self.config.repetition_penalty
bos_token_id = bos_token_id if bos_token_id is not None else self.config.bos_token_id
pad_token_id = pad_token_id if pad_token_id is not None else self.config.pad_token_id
eos_token_id = eos_token_id if eos_token_id is not None else self.config.eos_token_id
length_penalty = length_penalty if length_penalty is not None else self.config.length_penalty
no_repeat_ngram_size = (
no_repeat_ngram_size if no_repeat_ngram_size is not None else self.config.no_repeat_ngram_size
)
bad_words_ids = bad_words_ids if bad_words_ids is not None else self.config.bad_words_ids
num_return_sequences = (
num_return_sequences if num_return_sequences is not None else self.config.num_return_sequences
)
decoder_start_token_id = (
decoder_start_token_id if decoder_start_token_id is not None else self.config.decoder_start_token_id
)
forced_bos_token_id = (
forced_bos_token_id if forced_bos_token_id is not None else self.config.forced_bos_token_id
)
forced_eos_token_id = (
forced_eos_token_id if forced_eos_token_id is not None else self.config.forced_eos_token_id
)
if input_ids is not None:
batch_size = shape_list(input_ids)[0] # overridden by the input batch_size
else:
batch_size = 1
assert isinstance(max_length, int) and max_length > 0, "`max_length` should be a strictly positive integer."
assert isinstance(min_length, int) and min_length >= 0, "`min_length` should be a positive integer."
assert isinstance(do_sample, bool), "`do_sample` should be a boolean."
assert isinstance(early_stopping, bool), "`early_stopping` should be a boolean."
assert isinstance(num_beams, int) and num_beams > 0, "`num_beams` should be a strictly positive integer."
assert temperature > 0, "`temperature` should be strictly positive."
assert isinstance(top_k, int) and top_k >= 0, "`top_k` should be a positive integer."
assert 0 <= top_p <= 1, "`top_p` should be between 0 and 1."
assert repetition_penalty >= 1.0, "`repetition_penalty` should be >= 1."
assert input_ids is not None or (
isinstance(bos_token_id, int) and bos_token_id >= 0
), "If input_ids is not defined, `bos_token_id` should be a positive integer."
assert pad_token_id is None or (
isinstance(pad_token_id, int) and (pad_token_id >= 0)
), "`pad_token_id` should be a positive integer."
assert (eos_token_id is None) or (
isinstance(eos_token_id, int) and (eos_token_id >= 0)
), "`eos_token_id` should be a positive integer."
assert length_penalty > 0, "`length_penalty` should be strictly positive."
assert (
isinstance(num_return_sequences, int) and num_return_sequences > 0
), "`num_return_sequences` should be a strictly positive integer."
assert (
bad_words_ids is None or isinstance(bad_words_ids, list) and isinstance(bad_words_ids[0], list)
), "`bad_words_ids` is either `None` or a list of lists of tokens that should not be generated"
if input_ids is None:
assert isinstance(bos_token_id, int) and bos_token_id >= 0, (
"you should either supply a context to complete as `input_ids` input "
"or a `bos_token_id` (integer >= 0) as a first token to start the generation."
)
input_ids = tf.fill((batch_size, 1), bos_token_id)
else:
assert len(shape_list(input_ids)) == 2, "Input prompt should be of shape (batch_size, sequence length)."
# not allow to duplicate outputs when greedy decoding
if do_sample is False:
if num_beams == 1:
# no_beam_search greedy generation conditions
assert (
num_return_sequences == 1
), "Greedy decoding will always produce the same output for num_beams == 1 and num_return_sequences > 1. Please set num_return_sequences = 1"
else:
# beam_search greedy generation conditions
assert (
num_beams >= num_return_sequences
), "Greedy beam search decoding cannot return more sequences than it has beams. Please set num_beams >= num_return_sequences"
# create attention mask if necessary
# TODO (PVP): this should later be handled by the forward fn() in each model in the future see PR 3140
if (attention_mask is None) and (pad_token_id is not None) and (pad_token_id in input_ids.numpy()):
attention_mask = tf.cast(tf.math.not_equal(input_ids, pad_token_id), dtype=tf.int32)
elif attention_mask is None:
attention_mask = tf.ones_like(input_ids)
if pad_token_id is None and eos_token_id is not None:
logger.warning(
"Setting `pad_token_id` to {} (first `eos_token_id`) to generate sequence".format(eos_token_id)
)
pad_token_id = eos_token_id
# current position and vocab size
cur_len = shape_list(input_ids)[1] # unused
vocab_size = self.config.vocab_size
# set effective batch size and effective batch multiplier according to do_sample
if do_sample:
effective_batch_size = batch_size * num_return_sequences
effective_batch_mult = num_return_sequences
else:
effective_batch_size = batch_size
effective_batch_mult = 1
if self.config.is_encoder_decoder:
if decoder_start_token_id is None:
decoder_start_token_id = bos_token_id
assert (
decoder_start_token_id is not None
), "decoder_start_token_id or bos_token_id has to be defined for encoder-decoder generation"
assert hasattr(self, "get_encoder"), "{} should have a 'get_encoder' function defined".format(self)
assert callable(self.get_encoder), "{} should be a method".format(self.get_encoder)
# get encoder and store encoder outputs
encoder = self.get_encoder()
encoder_outputs = encoder(input_ids, attention_mask=attention_mask)
# Expand input ids if num_beams > 1 or num_return_sequences > 1
if num_return_sequences > 1 or num_beams > 1:
input_ids_len = shape_list(input_ids)[-1]
input_ids = tf.broadcast_to(
tf.expand_dims(input_ids, 1), (batch_size, effective_batch_mult * num_beams, input_ids_len)
)
attention_mask = tf.broadcast_to(
tf.expand_dims(attention_mask, 1), (batch_size, effective_batch_mult * num_beams, input_ids_len)
)
input_ids = tf.reshape(
input_ids, (effective_batch_size * num_beams, input_ids_len)
) # shape: (batch_size * num_return_sequences * num_beams, cur_len)
attention_mask = tf.reshape(
attention_mask, (effective_batch_size * num_beams, input_ids_len)
) # shape: (batch_size * num_return_sequences * num_beams, cur_len)
if self.config.is_encoder_decoder:
# create empty decoder_input_ids
input_ids = (
tf.ones(
(effective_batch_size * num_beams, 1),
dtype=tf.int32,
)
* decoder_start_token_id
)
cur_len = 1
assert (
batch_size == encoder_outputs[0].shape[0]
), f"expected encoder_outputs[0] to have 1st dimension bs={batch_size}, got {encoder_outputs[0].shape[0]} "
# expand batch_idx to assign correct encoder output for expanded input_ids (due to num_beams > 1 and num_return_sequences > 1)
expanded_batch_idxs = tf.reshape(
tf.repeat(tf.expand_dims(tf.range(batch_size), -1), repeats=num_beams * effective_batch_mult, axis=1),
shape=(-1,),
)
# expand encoder_outputs
encoder_outputs = (tf.gather(encoder_outputs[0], expanded_batch_idxs, axis=0),)
else:
encoder_outputs = None
cur_len = shape_list(input_ids)[-1]
assert (
cur_len < max_length
), f"The context has {cur_len} number of tokens, but `max_length` is only {max_length}. Please make sure that `max_length` is bigger than the number of tokens, by setting either `generate(max_length=...,...)` or `config.max_length = ...`"
if num_beams > 1:
output = self._generate_beam_search(
input_ids,
cur_len=cur_len,
max_length=max_length,
min_length=min_length,
do_sample=do_sample,
early_stopping=early_stopping,
temperature=temperature,
top_k=top_k,
top_p=top_p,
repetition_penalty=repetition_penalty,
no_repeat_ngram_size=no_repeat_ngram_size,
bad_words_ids=bad_words_ids,
pad_token_id=pad_token_id,
eos_token_id=eos_token_id,
batch_size=effective_batch_size,
num_return_sequences=num_return_sequences,
length_penalty=length_penalty,
num_beams=num_beams,
vocab_size=vocab_size,
encoder_outputs=encoder_outputs,
attention_mask=attention_mask,
use_cache=use_cache,
forced_bos_token_id=forced_bos_token_id,
forced_eos_token_id=forced_eos_token_id,
)
else:
output = self._generate_no_beam_search(
input_ids,
cur_len=cur_len,
max_length=max_length,
min_length=min_length,
do_sample=do_sample,
temperature=temperature,
top_k=top_k,
top_p=top_p,
repetition_penalty=repetition_penalty,
no_repeat_ngram_size=no_repeat_ngram_size,
bad_words_ids=bad_words_ids,
pad_token_id=pad_token_id,
eos_token_id=eos_token_id,
batch_size=effective_batch_size,
vocab_size=vocab_size,
encoder_outputs=encoder_outputs,
attention_mask=attention_mask,
use_cache=use_cache,
)
return output
def _generate_no_beam_search(
self,
input_ids,
cur_len,
max_length,
min_length,
do_sample,
temperature,
top_k,
top_p,
repetition_penalty,
no_repeat_ngram_size,
bad_words_ids,
pad_token_id,
eos_token_id,
batch_size,
vocab_size,
encoder_outputs,
attention_mask,
use_cache,
**kwargs
):
"""
Generate sequences for each example without beam search (num_beams == 1). All returned sequence are generated
independantly.
"""
# length of generated sentences / unfinished sentences
unfinished_sents = tf.ones_like(input_ids[:, 0])
sent_lengths = tf.ones_like(input_ids[:, 0]) * max_length
past = encoder_outputs # defined for encoder-decoder models, None for decoder-only models
while cur_len < max_length:
model_inputs = self.prepare_inputs_for_generation(
input_ids, past=past, attention_mask=attention_mask, use_cache=use_cache, **kwargs
)
outputs = self(**model_inputs)
next_token_logits = outputs[0][:, -1, :]
# if model has past, then set the past variable to speed up decoding
if self._use_cache(outputs, use_cache):
past = outputs[1]
# repetition penalty from CTRL paper (https://arxiv.org/abs/1909.05858)
if repetition_penalty != 1.0:
next_token_logits_penalties = _create_next_token_logits_penalties(
input_ids, next_token_logits, repetition_penalty
)
next_token_logits = tf.math.multiply(next_token_logits, next_token_logits_penalties)
if no_repeat_ngram_size > 0:
# calculate a list of banned tokens to prevent repetitively generating the same ngrams
# from fairseq: https://github.com/pytorch/fairseq/blob/a07cb6f40480928c9e0548b737aadd36ee66ac76/fairseq/sequence_generator.py#L345
banned_tokens = calc_banned_ngram_tokens(input_ids, batch_size, no_repeat_ngram_size, cur_len)
# create banned_tokens boolean mask
banned_tokens_indices_mask = []
for banned_tokens_slice in banned_tokens:
banned_tokens_indices_mask.append(
[True if token in banned_tokens_slice else False for token in range(vocab_size)]
)
next_token_logits = set_tensor_by_indices_to_value(
next_token_logits, tf.convert_to_tensor(banned_tokens_indices_mask, dtype=tf.bool), -float("inf")
)
if bad_words_ids is not None:
# calculate a list of banned tokens according to bad words
banned_tokens = calc_banned_bad_words_ids(input_ids, bad_words_ids)
banned_tokens_indices_mask = []
for banned_tokens_slice in banned_tokens:
banned_tokens_indices_mask.append(
[True if token in banned_tokens_slice else False for token in range(vocab_size)]
)
next_token_logits = set_tensor_by_indices_to_value(
next_token_logits, tf.convert_to_tensor(banned_tokens_indices_mask, dtype=tf.bool), -float("inf")
)
# set eos token prob to zero if min_length is not reached
if eos_token_id is not None and cur_len < min_length:
# create eos_token_id boolean mask
is_token_logit_eos_token = tf.convert_to_tensor(
[True if token is eos_token_id else False for token in range(vocab_size)], dtype=tf.bool
)
eos_token_indices_mask = tf.broadcast_to(is_token_logit_eos_token, [batch_size, vocab_size])
next_token_logits = set_tensor_by_indices_to_value(
next_token_logits, eos_token_indices_mask, -float("inf")
)
if do_sample:
# Temperature (higher temperature => more likely to sample low probability tokens)
if temperature != 1.0:
next_token_logits = next_token_logits / temperature
# Top-p/top-k filtering
next_token_logits = tf_top_k_top_p_filtering(next_token_logits, top_k=top_k, top_p=top_p)
# Sample
next_token = tf.squeeze(
tf.random.categorical(next_token_logits, dtype=tf.int32, num_samples=1), axis=1
)
else:
# Greedy decoding
next_token = tf.math.argmax(next_token_logits, axis=-1, output_type=tf.int32)
# update generations and finished sentences
if eos_token_id is not None:
# pad finished sentences if eos_token_id exist
tokens_to_add = next_token * unfinished_sents + (pad_token_id) * (1 - unfinished_sents)
else:
tokens_to_add = next_token
# add token and increase length by one
input_ids = tf.concat([input_ids, tf.expand_dims(tokens_to_add, -1)], 1)
cur_len = cur_len + 1
if eos_token_id is not None:
eos_in_sents = tokens_to_add == eos_token_id
# if sentence is unfinished and the token to add is eos, sent_lengths is filled with current length
is_sents_unfinished_and_token_to_add_is_eos = tf.math.multiply(
unfinished_sents, tf.cast(eos_in_sents, tf.int32)
)
sent_lengths = (
sent_lengths * (1 - is_sents_unfinished_and_token_to_add_is_eos)
+ cur_len * is_sents_unfinished_and_token_to_add_is_eos
)
# unfinished_sents is set to zero if eos in sentence
unfinished_sents -= is_sents_unfinished_and_token_to_add_is_eos
# stop when there is a </s> in each sentence, or if we exceed the maximum length
if tf.math.reduce_max(unfinished_sents) == 0:
break
# extend attention_mask for new generated input if only decoder
if self.config.is_encoder_decoder is False:
attention_mask = tf.concat(
[attention_mask, tf.ones((shape_list(attention_mask)[0], 1), dtype=tf.int32)], axis=-1
)
# if there are different sentences lengths in the batch, some batches have to be padded
min_sent_length = tf.math.reduce_min(sent_lengths)
max_sent_length = tf.math.reduce_max(sent_lengths)
if min_sent_length != max_sent_length:
assert pad_token_id is not None, "`Pad_token_id` has to be defined if batches have different lengths"
# finished sents are filled with pad_token
padding = tf.ones([batch_size, max_sent_length.numpy()], dtype=tf.int32) * pad_token_id
# create length masks for tf.where operation
broad_casted_sent_lengths = tf.broadcast_to(
tf.expand_dims(sent_lengths, -1), [batch_size, max_sent_length]
)
broad_casted_range = tf.transpose(
tf.broadcast_to(tf.expand_dims(tf.range(max_sent_length), -1), [max_sent_length, batch_size])
)
decoded = tf.where(broad_casted_range < broad_casted_sent_lengths, input_ids, padding)
else:
decoded = input_ids
return decoded
def _generate_beam_search(
self,
input_ids,
cur_len,
max_length,
min_length,
do_sample,
early_stopping,
temperature,
top_k,
top_p,
repetition_penalty,
no_repeat_ngram_size,
bad_words_ids,
pad_token_id,
eos_token_id,
batch_size,
num_return_sequences,
length_penalty,
num_beams,
vocab_size,
encoder_outputs,
attention_mask,
use_cache,
forced_bos_token_id,
forced_eos_token_id,
**kwargs,
):
"""Generate sequences for each example with beam search."""
# generated hypotheses
generated_hyps = [
BeamHypotheses(num_beams, max_length, length_penalty, early_stopping=early_stopping)
for _ in range(batch_size)
]
# for greedy decoding it is made sure that only tokens of the first beam are considered to avoid sampling the exact same tokens three times
if do_sample is False:
beam_scores_begin = tf.zeros((batch_size, 1), dtype=tf.float32)
beam_scores_end = tf.ones((batch_size, num_beams - 1), dtype=tf.float32) * (-1e9)
beam_scores = tf.concat([beam_scores_begin, beam_scores_end], -1)
else:
beam_scores = tf.zeros((batch_size, num_beams), dtype=tf.float32)
beam_scores = tf.reshape(beam_scores, (batch_size * num_beams,))
# cache compute states
past = encoder_outputs
# to stay similar to torch : past = (encoder_outputs, None) if encoder_outputs is not None else None
# done sentences
done = [False for _ in range(batch_size)]
while cur_len < max_length:
model_inputs = self.prepare_inputs_for_generation(
input_ids, past=past, attention_mask=attention_mask, use_cache=use_cache, **kwargs
)
outputs = self(**model_inputs) # (batch_size * num_beams, cur_len, vocab_size)
next_token_logits = outputs[0][:, -1, :] # (batch_size * num_beams, vocab_size)
# if model has past, then set the past variable to speed up decoding
if self._use_cache(outputs, use_cache):
past = outputs[1]
# repetition penalty (from CTRL paper https://arxiv.org/abs/1909.05858)
if repetition_penalty != 1.0:
next_token_logits_penalties = _create_next_token_logits_penalties(
input_ids, next_token_logits, repetition_penalty
)
next_token_logits = tf.math.multiply(next_token_logits, next_token_logits_penalties)
# Temperature (higher temperature => more likely to sample low probability tokens)
if temperature != 1.0:
next_token_logits = next_token_logits / temperature
if self.config.is_encoder_decoder and do_sample is False:
next_token_logits = self.adjust_logits_during_generation(
next_token_logits,
cur_len=cur_len,
max_length=max_length,
forced_bos_token_id=forced_bos_token_id,
forced_eos_token_id=forced_eos_token_id,
)
# calculate log softmax score
scores = tf.nn.log_softmax(next_token_logits, axis=-1) # (batch_size * num_beams, vocab_size)
# set eos token prob to zero if min_length is not reached
if eos_token_id is not None and cur_len < min_length:
# create eos_token_id boolean mask
num_batch_hypotheses = batch_size * num_beams
is_token_logit_eos_token = tf.convert_to_tensor(
[True if token is eos_token_id else False for token in range(vocab_size)], dtype=tf.bool
)
eos_token_indices_mask = tf.broadcast_to(is_token_logit_eos_token, [num_batch_hypotheses, vocab_size])
scores = set_tensor_by_indices_to_value(scores, eos_token_indices_mask, -float("inf"))
if no_repeat_ngram_size > 0:
# calculate a list of banned tokens to prevent repetitively generating the same ngrams
# from fairseq: https://github.com/pytorch/fairseq/blob/a07cb6f40480928c9e0548b737aadd36ee66ac76/fairseq/sequence_generator.py#L345
num_batch_hypotheses = batch_size * num_beams
banned_tokens = calc_banned_ngram_tokens(
input_ids, num_batch_hypotheses, no_repeat_ngram_size, cur_len
)
# create banned_tokens boolean mask
banned_tokens_indices_mask = []
for banned_tokens_slice in banned_tokens:
banned_tokens_indices_mask.append(
[True if token in banned_tokens_slice else False for token in range(vocab_size)]
)
scores = set_tensor_by_indices_to_value(
scores, tf.convert_to_tensor(banned_tokens_indices_mask, dtype=tf.bool), -float("inf")
)
if bad_words_ids is not None:
# calculate a list of banned tokens according to bad words
banned_tokens = calc_banned_bad_words_ids(input_ids, bad_words_ids)
banned_tokens_indices_mask = []
for banned_tokens_slice in banned_tokens:
banned_tokens_indices_mask.append(
[True if token in banned_tokens_slice else False for token in range(vocab_size)]
)
scores = set_tensor_by_indices_to_value(
scores, tf.convert_to_tensor(banned_tokens_indices_mask, dtype=tf.bool), -float("inf")
)
assert shape_list(scores) == [batch_size * num_beams, vocab_size]
if do_sample:
_scores = scores + tf.broadcast_to(
beam_scores[:, None], (batch_size * num_beams, vocab_size)
) # (batch_size * num_beams, vocab_size)
# Top-p/top-k filtering
_scores = tf_top_k_top_p_filtering(
_scores, top_k=top_k, top_p=top_p, min_tokens_to_keep=2
) # (batch_size * num_beams, vocab_size)
# Sample 2 next tokens for each beam (so we have some spare tokens and match output of greedy beam search)
_scores = tf.reshape(_scores, (batch_size, num_beams * vocab_size))
next_tokens = sample_without_replacement(
_scores, num_samples=2 * num_beams
) # (batch_size, 2 * num_beams)
# Compute next scores
next_scores = tf.gather(_scores, next_tokens, batch_dims=1) # (batch_size, 2 * num_beams)
# sort the sampled vector to make sure that the first num_beams samples are the best
next_scores_indices = tf.argsort(next_scores, direction="DESCENDING", axis=1)
next_scores = tf.gather(next_scores, next_scores_indices, batch_dims=1) # (batch_size, num_beams * 2)
next_tokens = tf.gather(next_tokens, next_scores_indices, batch_dims=1) # (batch_size, num_beams * 2)
else:
# Add the log prob of the new beams to the log prob of the beginning of the sequence (sum of logs == log of the product)
next_scores = scores + tf.broadcast_to(
beam_scores[:, None], (batch_size * num_beams, vocab_size)
) # (batch_size * num_beams, vocab_size)
# re-organize to group the beam together (we are keeping top hypothesis across beams)
next_scores = tf.reshape(
next_scores, (batch_size, num_beams * vocab_size)
) # (batch_size, num_beams * vocab_size)
next_scores, next_tokens = tf.math.top_k(next_scores, k=2 * num_beams, sorted=True)
assert shape_list(next_scores) == shape_list(next_tokens) == [batch_size, 2 * num_beams]
# next batch beam content
next_batch_beam = []
# for each sentence
for batch_idx in range(batch_size):
# if we are done with this sentence
if done[batch_idx]:
assert (
len(generated_hyps[batch_idx]) >= num_beams
), "Batch can only be done if at least {} beams have been generated".format(num_beams)
assert (
eos_token_id is not None and pad_token_id is not None
), "generated beams >= num_beams -> eos_token_id and pad_token have to be defined"
next_batch_beam.extend([(0, pad_token_id, 0)] * num_beams) # pad the batch
continue
# next sentence beam content
next_sent_beam = []
# next tokens for this sentence
for beam_token_rank, (beam_token_id, beam_token_score) in enumerate(
zip(next_tokens[batch_idx], next_scores[batch_idx])
):
# get beam and token IDs
beam_id = beam_token_id // vocab_size
token_id = beam_token_id % vocab_size
effective_beam_id = batch_idx * num_beams + beam_id
# add to generated hypotheses if end of sentence or last iteration
if (eos_token_id is not None) and (token_id.numpy() == eos_token_id):
# if beam_token does not belong to top num_beams tokens, it should not be added
is_beam_token_worse_than_top_num_beams = beam_token_rank >= num_beams
if is_beam_token_worse_than_top_num_beams:
continue
generated_hyps[batch_idx].add(
tf.identity(input_ids[effective_beam_id]), beam_token_score.numpy()
)
else:
# add next predicted token if it is not eos_token
next_sent_beam.append((beam_token_score, token_id, effective_beam_id))
# the beam for next step is full
if len(next_sent_beam) == num_beams:
break
# Check if we are done so that we can save a pad step if all(done)
done[batch_idx] = done[batch_idx] or generated_hyps[batch_idx].is_done(
tf.reduce_max(next_scores[batch_idx]).numpy(), cur_len
)
# update next beam content
assert len(next_sent_beam) == num_beams, "Beam should always be full"
next_batch_beam.extend(next_sent_beam)
assert len(next_batch_beam) == num_beams * (batch_idx + 1)
# stop when we are done with each sentence
if all(done):
break
# sanity check / prepare next batch
assert len(next_batch_beam) == batch_size * num_beams
beam_scores = tf.convert_to_tensor([x[0] for x in next_batch_beam], dtype=tf.float32)
beam_tokens = tf.convert_to_tensor([x[1] for x in next_batch_beam], dtype=tf.int32)
beam_idx = tf.convert_to_tensor([x[2] for x in next_batch_beam], dtype=tf.int32)
# re-order batch and update current length
input_ids = tf.stack([tf.identity(input_ids[x, :]) for x in beam_idx])
input_ids = tf.concat([input_ids, tf.expand_dims(beam_tokens, 1)], axis=-1)
cur_len = cur_len + 1
# re-order internal states
if past is not None:
past = self._reorder_cache(past, beam_idx)
# extend attention_mask for new generated input if only decoder
if self.config.is_encoder_decoder is False:
attention_mask = tf.concat(
[attention_mask, tf.ones((shape_list(attention_mask)[0], 1), dtype=tf.int32)], axis=-1
)
# finalize all open beam hypotheses and end to generated hypotheses
for batch_idx in range(batch_size):
# Add all open beam hypothesis to generated_hyps
if done[batch_idx]:
continue
# test that beam scores match previously calculated scores if not eos and batch_idx not done
if eos_token_id is not None and all(
(token_id % vocab_size).numpy().item() != eos_token_id for token_id in next_tokens[batch_idx]
):
assert tf.reduce_all(
next_scores[batch_idx, :num_beams] == tf.reshape(beam_scores, (batch_size, num_beams))[batch_idx]
), "If batch_idx is not done, final next scores: {} have to equal to accumulated beam_scores: {}".format(
next_scores[:, :num_beams][batch_idx], tf.reshape(beam_scores, (batch_size, num_beams))[batch_idx]
)
# need to add best num_beams hypotheses to generated hyps
for beam_id in range(num_beams):
effective_beam_id = batch_idx * num_beams + beam_id
final_score = beam_scores[effective_beam_id].numpy().item()
final_tokens = input_ids[effective_beam_id]
generated_hyps[batch_idx].add(final_tokens, final_score)
# depending on whether greedy generation is wanted or not define different output_batch_size and output_num_return_sequences_per_batch
output_batch_size = batch_size if do_sample else batch_size * num_return_sequences
output_num_return_sequences_per_batch = 1 if do_sample else num_return_sequences
# select the best hypotheses
sent_lengths_list = []
best = []
# retrieve best hypotheses
for i, hypotheses in enumerate(generated_hyps):
sorted_hyps = sorted(hypotheses.beams, key=lambda x: x[0])
for j in range(output_num_return_sequences_per_batch):
best_hyp = sorted_hyps.pop()[1]
sent_lengths_list.append(len(best_hyp))
best.append(best_hyp)
assert output_batch_size == len(best), "Output batch size {} must match output beam hypotheses {}".format(
output_batch_size, len(best)
)
sent_lengths = tf.convert_to_tensor(sent_lengths_list, dtype=tf.int32)
# shorter batches are filled with pad_token
if tf.reduce_min(sent_lengths).numpy() != tf.reduce_max(sent_lengths).numpy():
assert pad_token_id is not None, "`Pad_token_id` has to be defined"
sent_max_len = min(tf.reduce_max(sent_lengths).numpy() + 1, max_length)
decoded_list = []
# fill with hypothesis and eos_token_id if necessary
for i, hypo in enumerate(best):
assert sent_lengths[i] == shape_list(hypo)[0]
# if sent_length is max_len do not pad
if sent_lengths[i] == sent_max_len:
decoded_slice = hypo
else:
# else pad to sent_max_len
num_pad_tokens = sent_max_len - sent_lengths[i]
padding = pad_token_id * tf.ones((num_pad_tokens,), dtype=tf.int32)
decoded_slice = tf.concat([hypo, padding], axis=-1)
# finish sentence with EOS token
if sent_lengths[i] < max_length:
decoded_slice = tf.where(
tf.range(sent_max_len, dtype=tf.int32) == sent_lengths[i],
eos_token_id * tf.ones((sent_max_len,), dtype=tf.int32),
decoded_slice,
)
# add to list
decoded_list.append(decoded_slice)
decoded = tf.stack(decoded_list)
else:
# none of the hypotheses have an eos_token
assert (len(hypo) == max_length for hypo in best)
decoded = tf.stack(best)
return decoded
@staticmethod
def _reorder_cache(past, beam_idx):
return tuple(tf.gather(layer_past, beam_idx, axis=1) for layer_past in past)
def adjust_logits_during_generation(
self, logits, cur_len, max_length, forced_bos_token_id, forced_eos_token_id, **kwargs
):
"""
Implement in subclasses of :class:`~transformers.PreTrainedModel` for custom behavior to adjust the logits in
the generate method.
"""
if cur_len == 1 and forced_bos_token_id is not None:
vocab_range = tf.constant(range(self.config.vocab_size))
return tf.where(vocab_range != forced_bos_token_id, -1e8, logits)
elif cur_len == max_length - 1 and forced_eos_token_id is not None:
vocab_range = tf.constant(range(self.config.vocab_size))
return tf.where(vocab_range != forced_eos_token_id, -1e8, logits)
else:
return logits
def _create_next_token_logits_penalties(input_ids, logits, repetition_penalty):
# create logit penalties for already seen input_ids
token_penalties = np.ones(shape_list(logits))
prev_input_ids = [np.unique(input_id) for input_id in input_ids.numpy()]
for i, prev_input_id in enumerate(prev_input_ids):
logit_penalized = logits[i].numpy()[prev_input_id]
logit_penalties = np.zeros(logit_penalized.shape)
# if previous logit score is < 0 then multiply repetition penalty else divide
logit_penalties[logit_penalized < 0] = repetition_penalty
logit_penalties[logit_penalized > 0] = 1 / repetition_penalty
np.put(token_penalties[i], prev_input_id, logit_penalties)
return tf.convert_to_tensor(token_penalties, dtype=tf.float32)
def calc_banned_ngram_tokens(prev_input_ids, num_hypos, no_repeat_ngram_size, cur_len):
# Copied from fairseq for no_repeat_ngram in beam_search
if cur_len + 1 < no_repeat_ngram_size:
# return no banned tokens if we haven't generated no_repeat_ngram_size tokens yet
return [[] for _ in range(num_hypos)]
generated_ngrams = [{} for _ in range(num_hypos)]
for idx in range(num_hypos):
gen_tokens = prev_input_ids[idx].numpy().tolist()
generated_ngram = generated_ngrams[idx]
for ngram in zip(*[gen_tokens[i:] for i in range(no_repeat_ngram_size)]):
prev_ngram_tuple = tuple(ngram[:-1])
generated_ngram[prev_ngram_tuple] = generated_ngram.get(prev_ngram_tuple, []) + [ngram[-1]]
def _get_generated_ngrams(hypo_idx):
# Before decoding the next token, prevent decoding of ngrams that have already appeared
start_idx = cur_len + 1 - no_repeat_ngram_size
ngram_idx = tuple(prev_input_ids[hypo_idx, start_idx:cur_len].numpy().tolist())
return generated_ngrams[hypo_idx].get(ngram_idx, [])
banned_tokens = [_get_generated_ngrams(hypo_idx) for hypo_idx in range(num_hypos)]
return banned_tokens
def calc_banned_bad_words_ids(prev_input_ids, bad_words_ids):
banned_tokens = []
def _tokens_match(prev_tokens, tokens):
if len(tokens) == 0:
# if bad word tokens is just one token always ban it
return True
if len(tokens) > len(prev_tokens):
# if bad word tokens are longer than prev tokens they can't be equal
return False
if prev_tokens[-len(tokens) :] == tokens:
# if tokens match
return True
else:
return False
for prev_input_ids_slice in prev_input_ids:
banned_tokens_slice = []
for banned_token_seq in bad_words_ids:
assert len(banned_token_seq) > 0, "Banned words token sequences {} cannot have an empty list".format(
bad_words_ids
)
if _tokens_match(prev_input_ids_slice.numpy().tolist(), banned_token_seq[:-1]) is False:
# if tokens do not match continue
continue
banned_tokens_slice.append(banned_token_seq[-1])
banned_tokens.append(banned_tokens_slice)
return banned_tokens
def tf_top_k_top_p_filtering(logits, top_k=0, top_p=1.0, filter_value=-float("Inf"), min_tokens_to_keep=1):
"""
Filter a distribution of logits using top-k and/or nucleus (top-p) filtering
Args:
logits: logits distribution shape (batch size, vocabulary size)
if top_k > 0: keep only top k tokens with highest probability (top-k filtering).
if top_p < 1.0: keep the top tokens with cumulative probability >= top_p (nucleus filtering).
Nucleus filtering is described in Holtzman et al. (http://arxiv.org/abs/1904.09751)
Make sure we keep at least min_tokens_to_keep per batch example in the output
From: https://gist.github.com/thomwolf/1a5a29f6962089e871b94cbd09daf317
"""
logits_shape = shape_list(logits)
if top_k > 0:
top_k = min(max(top_k, min_tokens_to_keep), logits_shape[-1]) # Safety check
# Remove all tokens with a probability less than the last token of the top-k
indices_to_remove = logits < tf.math.top_k(logits, k=top_k)[0][..., -1, None]
logits = set_tensor_by_indices_to_value(logits, indices_to_remove, filter_value)
if top_p < 1.0:
sorted_indices = tf.argsort(logits, direction="DESCENDING")
sorted_logits = tf.gather(
logits, sorted_indices, axis=-1, batch_dims=1
) # expects logits to be of dim (batch_size, vocab_size)
cumulative_probs = tf.math.cumsum(tf.nn.softmax(sorted_logits, axis=-1), axis=-1)
# Remove tokens with cumulative probability above the threshold (token with 0 are kept)
sorted_indices_to_remove = cumulative_probs > top_p
if min_tokens_to_keep > 1:
# Keep at least min_tokens_to_keep (set to min_tokens_to_keep-1 because we add the first one below)
sorted_indices_to_remove = tf.concat(
[
tf.zeros_like(sorted_indices_to_remove[:, :min_tokens_to_keep]),
sorted_indices_to_remove[:, min_tokens_to_keep:],
],
-1,
)
# Shift the indices to the right to keep also the first token above the threshold
sorted_indices_to_remove = tf.roll(sorted_indices_to_remove, 1, axis=-1)
sorted_indices_to_remove = tf.concat(
[tf.zeros_like(sorted_indices_to_remove[:, :1]), sorted_indices_to_remove[:, 1:]],
-1,
)
# scatter sorted tensors to original indexing
indices_to_remove = scatter_values_on_batch_indices(sorted_indices_to_remove, sorted_indices)
logits = set_tensor_by_indices_to_value(logits, indices_to_remove, filter_value)
return logits
def scatter_values_on_batch_indices(values, batch_indices):
shape = shape_list(batch_indices)
# broadcast batch dim to shape
broad_casted_batch_dims = tf.reshape(tf.broadcast_to(tf.expand_dims(tf.range(shape[0]), axis=-1), shape), [1, -1])
# transform batch_indices to pair_indices
pair_indices = tf.transpose(tf.concat([broad_casted_batch_dims, tf.reshape(batch_indices, [1, -1])], 0))
# scatter values to pair indices
return tf.scatter_nd(pair_indices, tf.reshape(values, [-1]), shape)
def set_tensor_by_indices_to_value(tensor, indices, value):
# create value_tensor since tensor value assignment is not possible in TF
value_tensor = tf.zeros_like(tensor) + value
return tf.where(indices, value_tensor, tensor)
def sample_without_replacement(logits, num_samples):
"""
categorical sampling without replacement is currently not implemented the gumbel-max trick will do for now see
https://github.com/tensorflow/tensorflow/issues/9260 for more info
"""
z = -tf.math.log(tf.random.uniform(shape_list(logits), 0, 1))
_, indices = tf.nn.top_k(logits + z, num_samples)
return indices
def shape_list(x):
"""Deal with dynamic shape in tensorflow cleanly."""
static = x.shape.as_list()
dynamic = tf.shape(x)
return [dynamic[i] if s is None else s for i, s in enumerate(static)]
class BeamHypotheses(object):
def __init__(self, num_beams, max_length, length_penalty, early_stopping):
"""
Initialize n-best list of hypotheses.
"""
self.max_length = max_length - 1 # ignoring bos_token
self.length_penalty = length_penalty
self.early_stopping = early_stopping
self.num_beams = num_beams
self.beams = []
self.worst_score = 1e9
def __len__(self):
"""
Number of hypotheses in the list.
"""
return len(self.beams)
def add(self, hyp, sum_logprobs):
"""
Add a new hypothesis to the list.
"""
score = sum_logprobs / len(hyp) ** self.length_penalty
if len(self) < self.num_beams or score > self.worst_score:
self.beams.append((score, hyp))
if len(self) > self.num_beams:
sorted_scores = sorted([(s, idx) for idx, (s, _) in enumerate(self.beams)])
del self.beams[sorted_scores[0][1]]
self.worst_score = sorted_scores[1][0]
else:
self.worst_score = min(score, self.worst_score)
def is_done(self, best_sum_logprobs, cur_len):
"""
If there are enough hypotheses and that none of the hypotheses being generated can become better than the worst
one in the heap, then we are done with this sentence.
"""
if len(self) < self.num_beams:
return False
elif self.early_stopping:
return True
else:
cur_score = best_sum_logprobs / cur_len ** self.length_penalty
ret = self.worst_score >= cur_score
return ret
|
AdaMix/src/transformers/generation_tf_utils.py/0
|
{
"file_path": "AdaMix/src/transformers/generation_tf_utils.py",
"repo_id": "AdaMix",
"token_count": 26353
}
| 47 |
from torch import nn
from transformers.activations import get_activation
class Adapter(nn.Module):
def __init__(self, dim, r, act):
super().__init__()
self.adapter_A = nn.Linear(dim, r)
self.act = get_activation(act)
self.adapter_B = nn.Linear(r, dim)
def forward(self, x, residual):
result = self.adapter_A(x)
result = self.act(result)
result = self.adapter_B(result)
return result + residual
|
AdaMix/src/transformers/models/adapter.py/0
|
{
"file_path": "AdaMix/src/transformers/models/adapter.py",
"repo_id": "AdaMix",
"token_count": 204
}
| 48 |
# coding=utf-8
# Copyright 2021 The Fairseq Authors and The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" TF 2.0 Bart model. """
import random
from typing import Dict, Optional, Tuple, Union
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...file_utils import (
add_code_sample_docstrings,
add_end_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
replace_return_docstrings,
)
from ...modeling_tf_outputs import (
TFBaseModelOutput,
TFBaseModelOutputWithPast,
TFSeq2SeqLMOutput,
TFSeq2SeqModelOutput,
)
# Public API
from ...modeling_tf_utils import (
DUMMY_INPUTS,
TFCausalLanguageModelingLoss,
TFPreTrainedModel,
TFSharedEmbeddings,
TFWrappedEmbeddings,
input_processing,
keras_serializable,
shape_list,
)
from ...utils import logging
from .configuration_bart import BartConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "facebook/bart-large"
_CONFIG_FOR_DOC = "BartConfig"
_TOKENIZER_FOR_DOC = "BartTokenizer"
LARGE_NEGATIVE = -1e8
def shift_tokens_right(input_ids: tf.Tensor, pad_token_id: int, decoder_start_token_id: int):
shifted_input_ids = tf.roll(input_ids, 1, axis=-1)
start_tokens = tf.fill((shape_list(shifted_input_ids)[0], 1), decoder_start_token_id)
shifted_input_ids = tf.concat([start_tokens, shifted_input_ids[:, 1:]], -1)
# replace possible -100 values in labels by `pad_token_id`
shifted_input_ids = tf.where(
shifted_input_ids == -100, tf.fill(shape_list(shifted_input_ids), pad_token_id), shifted_input_ids
)
if tf.executing_eagerly():
# "Verify that `labels` has only positive values and -100"
assert_gte0 = tf.debugging.assert_greater_equal(shifted_input_ids, tf.constant(0))
# Make sure the assertion op is called by wrapping the result in an identity no-op
with tf.control_dependencies([assert_gte0]):
shifted_input_ids = tf.identity(shifted_input_ids)
return shifted_input_ids
def _make_causal_mask(input_ids_shape: tf.TensorShape, past_key_values_length: int = 0):
"""
Make causal mask used for bi-directional self-attention.
"""
bsz, tgt_len = input_ids_shape
mask = tf.ones((tgt_len, tgt_len)) * LARGE_NEGATIVE
mask_cond = tf.range(shape_list(mask)[-1])
mask = tf.where(mask_cond < tf.reshape(mask_cond + 1, (shape_list(mask)[-1], 1)), 0.0, mask)
if past_key_values_length > 0:
mask = tf.concat([tf.zeros((tgt_len, past_key_values_length)), mask], axis=-1)
return tf.tile(mask[None, None, :, :], (bsz, 1, 1, 1))
def _expand_mask(mask: tf.Tensor, tgt_len: Optional[int] = None, past_key_values_length: int = 0):
"""
Expands attention_mask from `[bsz, seq_len]` to `[bsz, 1, tgt_seq_len, src_seq_len]`.
"""
src_len = shape_list(mask)[1]
tgt_len = tgt_len if tgt_len is not None else src_len
one_cst = tf.constant(1.0)
mask = tf.cast(mask, dtype=one_cst.dtype)
expanded_mask = tf.tile(mask[:, None, None, :], (1, 1, tgt_len, 1))
return (one_cst - expanded_mask) * LARGE_NEGATIVE
class TFBartLearnedPositionalEmbedding(TFSharedEmbeddings):
"""
This module learns positional embeddings up to a fixed maximum size.
"""
def __init__(self, num_embeddings: int, embedding_dim: int, **kwargs):
# Bart is set up so that if padding_idx is specified then offset the embedding ids by 2
# and adjust num_embeddings appropriately. Other models dont have this hack
self.offset = 2
super().__init__(num_embeddings + self.offset, embedding_dim, **kwargs)
def call(self, input_shape: tf.TensorShape, past_key_values_length: int = 0):
"""Input is expected to be of size [bsz x seqlen]."""
bsz, seq_len = input_shape[:2]
positions = tf.range(past_key_values_length, seq_len + past_key_values_length, delta=1, name="range")
return super().call(positions + self.offset)
class TFBartAttention(tf.keras.layers.Layer):
"""Multi-headed attention from "Attention Is All You Need"""
def __init__(
self,
embed_dim: int,
num_heads: int,
dropout: float = 0.0,
is_decoder: bool = False,
bias: bool = True,
**kwargs,
):
super().__init__(**kwargs)
self.embed_dim = embed_dim
self.num_heads = num_heads
self.dropout = tf.keras.layers.Dropout(dropout)
self.head_dim = embed_dim // num_heads
assert self.head_dim * num_heads == self.embed_dim, "embed_dim must be divisible by num_heads"
self.scaling = self.head_dim ** -0.5
self.is_decoder = is_decoder
self.k_proj = tf.keras.layers.Dense(embed_dim, use_bias=bias, name="k_proj")
self.q_proj = tf.keras.layers.Dense(embed_dim, use_bias=bias, name="q_proj")
self.v_proj = tf.keras.layers.Dense(embed_dim, use_bias=bias, name="v_proj")
self.out_proj = tf.keras.layers.Dense(embed_dim, use_bias=bias, name="out_proj")
def _shape(self, tensor: tf.Tensor, seq_len: int, bsz: int):
return tf.transpose(tf.reshape(tensor, (bsz, seq_len, self.num_heads, self.head_dim)), (0, 2, 1, 3))
def call(
self,
hidden_states: tf.Tensor,
key_value_states: Optional[tf.Tensor] = None,
past_key_value: Optional[Tuple[Tuple[tf.Tensor]]] = None,
attention_mask: Optional[tf.Tensor] = None,
layer_head_mask: Optional[tf.Tensor] = None,
training=False,
) -> Tuple[tf.Tensor, Optional[tf.Tensor]]:
"""Input shape: Batch x Time x Channel"""
# if key_value_states are provided this layer is used as a cross-attention layer
# for the decoder
is_cross_attention = key_value_states is not None
bsz, tgt_len, embed_dim = shape_list(hidden_states)
# get query proj
query_states = self.q_proj(hidden_states) * self.scaling
# get key, value proj
if is_cross_attention and past_key_value is not None:
# reuse k,v, cross_attentions
key_states = past_key_value[0]
value_states = past_key_value[1]
elif is_cross_attention:
# cross_attentions
key_states = self._shape(self.k_proj(key_value_states), -1, bsz)
value_states = self._shape(self.v_proj(key_value_states), -1, bsz)
elif past_key_value is not None:
# reuse k, v, self_attention
key_states = self._shape(self.k_proj(hidden_states), -1, bsz)
value_states = self._shape(self.v_proj(hidden_states), -1, bsz)
key_states = tf.concat([past_key_value[0], key_states], axis=2)
value_states = tf.concat([past_key_value[1], value_states], axis=2)
else:
# self_attention
key_states = self._shape(self.k_proj(hidden_states), -1, bsz)
value_states = self._shape(self.v_proj(hidden_states), -1, bsz)
if self.is_decoder:
# if cross_attention save Tuple(tf.Tensor, tf.Tensor) of all cross attention key/value_states.
# Further calls to cross_attention layer can then reuse all cross-attention
# key/value_states (first "if" case)
# if uni-directional self-attention (decoder) save Tuple(tf.Tensor, tf.Tensor) of
# all previous decoder key/value_states. Further calls to uni-directional self-attention
# can concat previous decoder key/value_states to current projected key/value_states (third "elif" case)
# if encoder bi-directional self-attention `past_key_value` is always `None`
past_key_value = (key_states, value_states)
proj_shape = (bsz * self.num_heads, -1, self.head_dim)
query_states = tf.reshape(self._shape(query_states, tgt_len, bsz), proj_shape)
key_states = tf.reshape(key_states, proj_shape)
value_states = tf.reshape(value_states, proj_shape)
src_len = shape_list(key_states)[1]
attn_weights = tf.matmul(query_states, key_states, transpose_b=True)
# The tf.debugging asserts are not compliant with XLA then they
# have to be disabled in other modes than eager.
if tf.executing_eagerly():
tf.debugging.assert_equal(
shape_list(attn_weights),
[bsz * self.num_heads, tgt_len, src_len],
message=f"Attention weights should be of size {(bsz * self.num_heads, tgt_len, src_len)}, but is {shape_list(attn_weights)}",
)
if attention_mask is not None:
# The tf.debugging asserts are not compliant with XLA then they
# have to be disabled in other modes than eager.
if tf.executing_eagerly():
tf.debugging.assert_equal(
shape_list(attention_mask),
[bsz, 1, tgt_len, src_len],
message=f"Attention mask should be of size {(bsz, 1, tgt_len, src_len)}, but is {shape_list(attention_mask)}",
)
attention_mask = tf.cast(attention_mask, dtype=attn_weights.dtype)
attn_weights = tf.reshape(attn_weights, (bsz, self.num_heads, tgt_len, src_len)) + attention_mask
attn_weights = tf.reshape(attn_weights, (bsz * self.num_heads, tgt_len, src_len))
attn_weights = tf.nn.softmax(attn_weights, axis=-1)
if layer_head_mask is not None:
# The tf.debugging asserts are not compliant with XLA then they
# have to be disabled in other modes than eager.
if tf.executing_eagerly():
tf.debugging.assert_equal(
shape_list(layer_head_mask),
[self.num_heads],
message=f"Head mask for a single layer should be of size {(self.num_heads)}, but is {shape_list(layer_head_mask)}",
)
attn_weights = tf.reshape(layer_head_mask, (1, -1, 1, 1)) * tf.reshape(
attn_weights, (bsz, self.num_heads, tgt_len, src_len)
)
attn_weights = tf.reshape(attn_weights, (bsz * self.num_heads, tgt_len, src_len))
attn_probs = self.dropout(attn_weights, training=training)
attn_output = tf.matmul(attn_probs, value_states)
# The tf.debugging asserts are not compliant with XLA then they
# have to be disabled in other modes than eager.
if tf.executing_eagerly():
tf.debugging.assert_equal(
shape_list(attn_output),
[bsz * self.num_heads, tgt_len, self.head_dim],
message=f"`attn_output` should be of size {(bsz, self.num_heads, tgt_len, self.head_dim)}, but is {shape_list(attn_output)}",
)
attn_output = tf.transpose(
tf.reshape(attn_output, (bsz, self.num_heads, tgt_len, self.head_dim)), (0, 2, 1, 3)
)
attn_output = tf.reshape(attn_output, (bsz, tgt_len, embed_dim))
attn_output = self.out_proj(attn_output)
attn_weights: tf.Tensor = tf.reshape(attn_weights, (bsz, self.num_heads, tgt_len, src_len))
return attn_output, attn_weights, past_key_value
class TFBartEncoderLayer(tf.keras.layers.Layer):
def __init__(self, config: BartConfig, **kwargs):
super().__init__(**kwargs)
self.embed_dim = config.d_model
self.self_attn = TFBartAttention(
self.embed_dim, config.encoder_attention_heads, dropout=config.attention_dropout, name="self_attn"
)
self.self_attn_layer_norm = tf.keras.layers.LayerNormalization(epsilon=1e-5, name="self_attn_layer_norm")
self.dropout = tf.keras.layers.Dropout(config.dropout)
self.activation_fn = get_tf_activation(config.activation_function)
self.activation_dropout = tf.keras.layers.Dropout(config.activation_dropout)
self.fc1 = tf.keras.layers.Dense(config.encoder_ffn_dim, name="fc1")
self.fc2 = tf.keras.layers.Dense(self.embed_dim, name="fc2")
self.final_layer_norm = tf.keras.layers.LayerNormalization(epsilon=1e-5, name="final_layer_norm")
def call(self, hidden_states: tf.Tensor, attention_mask: tf.Tensor, layer_head_mask: tf.Tensor, training=False):
"""
Args:
hidden_states (:obj:`tf.Tensor`): input to the layer of shape `(seq_len, batch, embed_dim)`
attention_mask (:obj:`tf.Tensor`): attention mask of size
`(batch, 1, tgt_len, src_len)` where padding elements are indicated by very large negative values.
layer_head_mask (:obj:`tf.Tensor`): mask for attention heads in a given layer of size
`(encoder_attention_heads,)`
"""
residual = hidden_states
hidden_states, self_attn_weights, _ = self.self_attn(
hidden_states=hidden_states, attention_mask=attention_mask, layer_head_mask=layer_head_mask
)
# The tf.debugging asserts are not compliant with XLA then they
# have to be disabled in other modes than eager.
if tf.executing_eagerly():
tf.debugging.assert_equal(
shape_list(hidden_states),
shape_list(residual),
message=f"Self attn modified the shape of query {shape_list(residual)} to {shape_list(hidden_states)}",
)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states = residual + hidden_states
hidden_states = self.self_attn_layer_norm(hidden_states)
residual = hidden_states
hidden_states = self.activation_fn(self.fc1(hidden_states))
hidden_states = self.activation_dropout(hidden_states, training=training)
hidden_states = self.fc2(hidden_states)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states = residual + hidden_states
hidden_states = self.final_layer_norm(hidden_states)
return hidden_states, self_attn_weights
class TFBartDecoderLayer(tf.keras.layers.Layer):
def __init__(self, config: BartConfig, **kwargs):
super().__init__(**kwargs)
self.embed_dim = config.d_model
self.self_attn = TFBartAttention(
embed_dim=self.embed_dim,
num_heads=config.decoder_attention_heads,
dropout=config.attention_dropout,
name="self_attn",
is_decoder=True,
)
self.dropout = tf.keras.layers.Dropout(config.dropout)
self.activation_fn = get_tf_activation(config.activation_function)
self.activation_dropout = tf.keras.layers.Dropout(config.activation_dropout)
self.self_attn_layer_norm = tf.keras.layers.LayerNormalization(epsilon=1e-5, name="self_attn_layer_norm")
self.encoder_attn = TFBartAttention(
self.embed_dim,
config.decoder_attention_heads,
dropout=config.attention_dropout,
name="encoder_attn",
is_decoder=True,
)
self.encoder_attn_layer_norm = tf.keras.layers.LayerNormalization(epsilon=1e-5, name="encoder_attn_layer_norm")
self.fc1 = tf.keras.layers.Dense(config.decoder_ffn_dim, name="fc1")
self.fc2 = tf.keras.layers.Dense(self.embed_dim, name="fc2")
self.final_layer_norm = tf.keras.layers.LayerNormalization(epsilon=1e-5, name="final_layer_norm")
def call(
self,
hidden_states,
attention_mask: Optional[tf.Tensor] = None,
encoder_hidden_states: Optional[tf.Tensor] = None,
encoder_attention_mask: Optional[tf.Tensor] = None,
layer_head_mask: Optional[tf.Tensor] = None,
encoder_layer_head_mask: Optional[tf.Tensor] = None,
past_key_value: Optional[Tuple[tf.Tensor]] = None,
training=False,
) -> Tuple[tf.Tensor, tf.Tensor, Tuple[Tuple[tf.Tensor]]]:
"""
Args:
hidden_states (:obj:`tf.Tensor`): input to the layer of shape `(seq_len, batch, embed_dim)`
attention_mask (:obj:`tf.Tensor`): attention mask of size
`(batch, 1, tgt_len, src_len)` where padding elements are indicated by very large negative values.
encoder_hidden_states (:obj:`tf.Tensor`): cross attention input to the layer of shape `(seq_len, batch, embed_dim)`
encoder_attention_mask (:obj:`tf.Tensor`): encoder attention mask of size
`(batch, 1, tgt_len, src_len)` where padding elements are indicated by very large negative values.
layer_head_mask (:obj:`tf.Tensor`): mask for attention heads in a given layer of size
`(decoder_attention_heads,)`
encoder_layer_head_mask (:obj:`tf.Tensor`): mask for encoder attention heads in a given layer of size
`(encoder_attention_heads,)`
past_key_value (:obj:`Tuple(tf.Tensor)`): cached past key and value projection states
"""
residual = hidden_states
# Self Attention
# decoder uni-directional self-attention cached key/values tuple is at positions 1,2
self_attn_past_key_value = past_key_value[:2] if past_key_value is not None else None
# add present self-attn cache to positions 1,2 of present_key_value tuple
hidden_states, self_attn_weights, present_key_value = self.self_attn(
hidden_states=hidden_states,
past_key_value=self_attn_past_key_value,
attention_mask=attention_mask,
layer_head_mask=layer_head_mask,
)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states = residual + hidden_states
hidden_states = self.self_attn_layer_norm(hidden_states)
# Cross-Attention Block
cross_attn_present_key_value = None
if encoder_hidden_states is not None:
residual = hidden_states
# cross_attn cached key/values tuple is at positions 3,4 of present_key_value tuple
cross_attn_past_key_value = past_key_value[-2:] if past_key_value is not None else None
hidden_states, _, cross_attn_present_key_value = self.encoder_attn(
hidden_states=hidden_states,
key_value_states=encoder_hidden_states,
attention_mask=encoder_attention_mask,
layer_head_mask=encoder_layer_head_mask,
past_key_value=cross_attn_past_key_value,
)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states = residual + hidden_states
hidden_states = self.encoder_attn_layer_norm(hidden_states)
# add cross-attn to positions 3,4 of present_key_value tuple
present_key_value = present_key_value + cross_attn_present_key_value
# Fully Connected
residual = hidden_states
hidden_states = self.activation_fn(self.fc1(hidden_states))
hidden_states = self.activation_dropout(hidden_states, training=training)
hidden_states = self.fc2(hidden_states)
hidden_states = self.dropout(hidden_states, training=training)
hidden_states = residual + hidden_states
hidden_states = self.final_layer_norm(hidden_states)
return (
hidden_states,
self_attn_weights,
present_key_value,
)
class TFBartPretrainedModel(TFPreTrainedModel):
config_class = BartConfig
base_model_prefix = "model"
@property
def dummy_inputs(self):
pad_token = 1
input_ids = tf.cast(tf.convert_to_tensor(DUMMY_INPUTS), tf.int32)
decoder_input_ids = tf.cast(tf.convert_to_tensor(DUMMY_INPUTS), tf.int32)
dummy_inputs = {
"decoder_input_ids": decoder_input_ids,
"attention_mask": tf.math.not_equal(input_ids, pad_token),
"input_ids": input_ids,
}
return dummy_inputs
@tf.function(
input_signature=[
{
"input_ids": tf.TensorSpec((None, None), tf.int32, name="input_ids"),
"attention_mask": tf.TensorSpec((None, None), tf.int32, name="attention_mask"),
"decoder_input_ids": tf.TensorSpec((None, None), tf.int32, name="decoder_input_ids"),
"decoder_attention_mask": tf.TensorSpec((None, None), tf.int32, name="decoder_attention_mask"),
}
]
)
def serving(self, inputs):
output = self.call(inputs)
return self.serving_output(output)
BART_START_DOCSTRING = r"""
This model inherits from :class:`~transformers.TFPreTrainedModel`. Check the superclass documentation for the
generic methods the library implements for all its model (such as downloading or saving, resizing the input
embeddings, pruning heads etc.)
This model is also a `tf.keras.Model <https://www.tensorflow.org/api_docs/python/tf/keras/Model>`__ subclass. Use
it as a regular TF 2.0 Keras Model and refer to the TF 2.0 documentation for all matter related to general usage
and behavior.
.. note::
TF 2.0 models accepts two formats as inputs:
- having all inputs as keyword arguments (like PyTorch models), or
- having all inputs as a list, tuple or dict in the first positional arguments.
This second option is useful when using :meth:`tf.keras.Model.fit` method which currently requires having all
the tensors in the first argument of the model call function: :obj:`model(inputs)`.
If you choose this second option, there are three possibilities you can use to gather all the input Tensors in
the first positional argument :
- a single Tensor with :obj:`input_ids` only and nothing else: :obj:`model(input_ids)`
- a list of varying length with one or several input Tensors IN THE ORDER given in the docstring:
:obj:`model([input_ids, attention_mask])` or :obj:`model([input_ids, attention_mask, token_type_ids])`
- a dictionary with one or several input Tensors associated to the input names given in the docstring:
:obj:`model({"input_ids": input_ids, "token_type_ids": token_type_ids})`
Args:
config (:class:`~transformers.BartConfig`): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the :meth:`~transformers.TFPreTrainedModel.from_pretrained` method to load the
model weights.
"""
BART_GENERATION_EXAMPLE = r"""
Summarization example::
>>> from transformers import BartTokenizer, TFBartForConditionalGeneration, BartConfig
>>> model = TFBartForConditionalGeneration.from_pretrained('facebook/bart-large')
>>> tokenizer = BartTokenizer.from_pretrained('facebook/bart-large')
>>> ARTICLE_TO_SUMMARIZE = "My friends are cool but they eat too many carbs."
>>> inputs = tokenizer([ARTICLE_TO_SUMMARIZE], max_length=1024, return_tensors='tf')
>>> # Generate Summary
>>> summary_ids = model.generate(inputs['input_ids'], num_beams=4, max_length=5, early_stopping=True)
>>> print([tokenizer.decode(g, skip_special_tokens=True, clean_up_tokenization_spaces=False) for g in summary_ids])
Mask filling example::
>>> from transformers import BartTokenizer, TFBartForConditionalGeneration
>>> tokenizer = BartTokenizer.from_pretrained('facebook/bart-large')
>>> TXT = "My friends are <mask> but they eat too many carbs."
>>> model = TFBartForConditionalGeneration.from_pretrained('facebook/bart-large')
>>> input_ids = tokenizer([TXT], return_tensors='tf')['input_ids']
>>> logits = model(input_ids).logits
>>> probs = tf.nn.softmax(logits[0])
>>> # probs[5] is associated with the mask token
"""
BART_INPUTS_DOCSTRING = r"""
Args:
input_ids (:obj:`tf.Tensor` of shape :obj:`({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using :class:`~transformers.BertTokenizer`. See
:meth:`transformers.PreTrainedTokenizer.encode` and :meth:`transformers.PreTrainedTokenizer.__call__` for
details.
`What are input IDs? <../glossary.html#input-ids>`__
attention_mask (:obj:`tf.Tensor` of shape :obj:`({0})`, `optional`):
Mask to avoid performing attention on padding token indices. Mask values selected in ``[0, 1]``:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
`What are attention masks? <../glossary.html#attention-mask>`__
decoder_input_ids (:obj:`tf.Tensor` of shape :obj:`(batch_size, target_sequence_length)`, `optional`):
Indices of decoder input sequence tokens in the vocabulary.
Indices can be obtained using :class:`~transformers.BartTokenizer`. See
:meth:`transformers.PreTrainedTokenizer.encode` and :meth:`transformers.PreTrainedTokenizer.__call__` for
details.
`What are input IDs? <../glossary.html#input-ids>`__
Bart uses the :obj:`eos_token_id` as the starting token for :obj:`decoder_input_ids` generation. If
:obj:`past_key_values` is used, optionally only the last :obj:`decoder_input_ids` have to be input (see
:obj:`past_key_values`).
For translation and summarization training, :obj:`decoder_input_ids` should be provided. If no
:obj:`decoder_input_ids` is provided, the model will create this tensor by shifting the :obj:`input_ids` to
the right for denoising pre-training following the paper.
decoder_attention_mask (:obj:`tf.Tensor` of shape :obj:`(batch_size, target_sequence_length)`, `optional`):
will be made by default and ignore pad tokens. It is not recommended to set this for most use cases.
head_mask (:obj:`tf.Tensor` of shape :obj:`(encoder_layers, encoder_attention_heads)`, `optional`):
Mask to nullify selected heads of the attention modules in the encoder. Mask values selected in ``[0, 1]``:
- 1 indicates the head is **not masked**,
- 0 indicates the heas is **masked**.
decoder_head_mask (:obj:`tf.Tensor` of shape :obj:`(decoder_layers, decoder_attention_heads)`, `optional`):
Mask to nullify selected heads of the attention modules in the decoder. Mask values selected in ``[0, 1]``:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
encoder_outputs (:obj:`tf.FloatTensor`, `optional`):
hidden states at the output of the last layer of the encoder. Used in the cross-attention of the decoder.
of shape :obj:`(batch_size, sequence_length, hidden_size)` is a sequence of
past_key_values (:obj:`Tuple[Tuple[tf.Tensor]]` of length :obj:`config.n_layers`)
contains precomputed key and value hidden states of the attention blocks. Can be used to speed up decoding.
If :obj:`past_key_values` are used, the user can optionally input only the last :obj:`decoder_input_ids`
(those that don't have their past key value states given to this model) of shape :obj:`(batch_size, 1)`
instead of all :obj:`decoder_input_ids` of shape :obj:`(batch_size, sequence_length)`.
use_cache (:obj:`bool`, `optional`, defaults to :obj:`True`):
If set to :obj:`True`, :obj:`past_key_values` key value states are returned and can be used to speed up
decoding (see :obj:`past_key_values`). Set to :obj:`False` during training, :obj:`True` during generation
output_attentions (:obj:`bool`, `optional`):
Whether or not to return the attentions tensors of all attention layers. See ``attentions`` under returned
tensors for more detail. This argument can be used only in eager mode, in graph mode the value in the
config will be used instead.
output_hidden_states (:obj:`bool`, `optional`):
Whether or not to return the hidden states of all layers. See ``hidden_states`` under returned tensors for
more detail. This argument can be used only in eager mode, in graph mode the value in the config will be
used instead.
return_dict (:obj:`bool`, `optional`):
Whether or not to return a :class:`~transformers.file_utils.ModelOutput` instead of a plain tuple. This
argument can be used in eager mode, in graph mode the value will always be set to True.
training (:obj:`bool`, `optional`, defaults to :obj:`False`):
Whether or not to use the model in training mode (some modules like dropout modules have different
behaviors between training and evaluation).
"""
@keras_serializable
class TFBartEncoder(tf.keras.layers.Layer):
config_class = BartConfig
"""
Transformer encoder consisting of *config.encoder_layers* self attention layers. Each layer is a
:class:`TFBartEncoderLayer`.
Args:
config: BartConfig
"""
def __init__(self, config: BartConfig, embed_tokens: Optional[TFSharedEmbeddings] = None, **kwargs):
super().__init__(**kwargs)
self.config = config
self.dropout = tf.keras.layers.Dropout(config.dropout)
self.layerdrop = config.encoder_layerdrop
self.padding_idx = config.pad_token_id
self.max_source_positions = config.max_position_embeddings
self.embed_scale = tf.math.sqrt(float(config.d_model)) if config.scale_embedding else 1.0
self.embed_tokens = embed_tokens
self.embed_positions = TFBartLearnedPositionalEmbedding(
config.max_position_embeddings,
config.d_model,
name="embed_positions",
)
self.layers = [TFBartEncoderLayer(config, name=f"layers.{i}") for i in range(config.encoder_layers)]
self.layernorm_embedding = tf.keras.layers.LayerNormalization(epsilon=1e-5, name="layernorm_embedding")
def get_embed_tokens(self):
return self.embed_tokens
def set_embed_tokens(self, embed_tokens):
self.embed_tokens = embed_tokens
def call(
self,
input_ids=None,
inputs_embeds=None,
attention_mask=None,
head_mask=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
training=False,
**kwargs,
):
"""
Args:
input_ids (:obj:`tf.Tensor` of shape :obj:`(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you
provide it.
Indices can be obtained using :class:`~transformers.BartTokenizer`. See
:meth:`transformers.PreTrainedTokenizer.encode` and :meth:`transformers.PreTrainedTokenizer.__call__`
for details.
`What are input IDs? <../glossary.html#input-ids>`__
attention_mask (:obj:`tf.Tensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Mask to avoid performing attention on padding token indices. Mask values selected in ``[0, 1]``:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
`What are attention masks? <../glossary.html#attention-mask>`__
head_mask (:obj:`tf.Tensor` of shape :obj:`(encoder_layers, encoder_attention_heads)`, `optional):
Mask to nullify selected heads of the attention modules. Mask values selected in ``[0, 1]``:
- 1 indicates the head is **not masked**,
- 0 indicates the heas is **masked**.
inputs_embeds (:obj:`tf.Tensor` of shape :obj:`(batch_size, sequence_length, hidden_size)`, `optional`):
Optionally, instead of passing :obj:`input_ids` you can choose to directly pass an embedded
representation. This is useful if you want more control over how to convert :obj:`input_ids` indices
into associated vectors than the model's internal embedding lookup matrix.
output_attentions (:obj:`bool`, `optional`):
Whether or not to return the attentions tensors of all attention layers. See ``attentions`` under
returned tensors for more detail.
output_hidden_states (:obj:`bool`, `optional`):
Whether or not to return the hidden states of all layers. See ``hidden_states`` under returned tensors
for more detail.
return_dict (:obj:`bool`, `optional`):
Whether or not to return a :class:`~transformers.file_utils.ModelOutput` instead of a plain tuple.
"""
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
kwargs_call=kwargs,
)
if inputs["input_ids"] is not None and inputs["inputs_embeds"] is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif inputs["input_ids"] is not None:
input_shape = shape_list(inputs["input_ids"])
elif inputs["inputs_embeds"] is not None:
input_shape = shape_list(inputs["inputs_embeds"])[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
if inputs["inputs_embeds"] is None:
inputs["inputs_embeds"] = self.embed_tokens(inputs["input_ids"]) * self.embed_scale
embed_pos = self.embed_positions(input_shape)
hidden_states = inputs["inputs_embeds"] + embed_pos
hidden_states = self.layernorm_embedding(hidden_states)
hidden_states = self.dropout(hidden_states, training=inputs["training"])
# check attention mask and invert
if inputs["attention_mask"] is not None:
# [bsz, seq_len] -> [bsz, 1, tgt_seq_len, src_seq_len]
attention_mask = _expand_mask(inputs["attention_mask"])
else:
attention_mask = None
encoder_states = () if inputs["output_hidden_states"] else None
all_attentions = () if inputs["output_attentions"] else None
# check if head_mask has a correct number of layers specified if desired
# The tf.debugging asserts are not compliant with XLA then they
# have to be disabled in other modes than eager.
if inputs["head_mask"] is not None and tf.executing_eagerly():
tf.debugging.assert_equal(
shape_list(inputs["head_mask"])[0],
len(self.layers),
message=f"The head_mask should be specified for {len(self.layers)} layers, but it is for {shape_list(inputs['head_mask'])[0]}.",
)
# encoder layers
for idx, encoder_layer in enumerate(self.layers):
if inputs["output_hidden_states"]:
encoder_states = encoder_states + (hidden_states,)
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
dropout_probability = random.uniform(0, 1)
if inputs["training"] and (dropout_probability < self.layerdrop): # skip the layer
continue
hidden_states, attn = encoder_layer(
hidden_states,
attention_mask,
inputs["head_mask"][idx] if inputs["head_mask"] is not None else None,
)
if inputs["output_attentions"]:
all_attentions += (attn,)
if inputs["output_hidden_states"]:
encoder_states = encoder_states + (hidden_states,)
if not inputs["return_dict"]:
return tuple(v for v in [hidden_states, encoder_states, all_attentions] if v is not None)
return TFBaseModelOutput(
last_hidden_state=hidden_states, hidden_states=encoder_states, attentions=all_attentions
)
@keras_serializable
class TFBartDecoder(tf.keras.layers.Layer):
config_class = BartConfig
"""
Transformer decoder consisting of *config.decoder_layers* layers. Each layer is a :class:`TFBartDecoderLayer`
Args:
config: BartConfig
embed_tokens: output embedding
"""
def __init__(self, config: BartConfig, embed_tokens: Optional[TFSharedEmbeddings] = None, **kwargs):
super().__init__(**kwargs)
self.config = config
self.padding_idx = config.pad_token_id
self.embed_tokens = embed_tokens
self.layerdrop = config.decoder_layerdrop
self.embed_positions = TFBartLearnedPositionalEmbedding(
config.max_position_embeddings,
config.d_model,
name="embed_positions",
)
self.embed_scale = tf.math.sqrt(float(config.d_model)) if config.scale_embedding else 1.0
self.layers = [TFBartDecoderLayer(config, name=f"layers.{i}") for i in range(config.decoder_layers)]
self.layernorm_embedding = tf.keras.layers.LayerNormalization(epsilon=1e-5, name="layernorm_embedding")
self.dropout = tf.keras.layers.Dropout(config.dropout)
def get_embed_tokens(self):
return self.embed_tokens
def set_embed_tokens(self, embed_tokens):
self.embed_tokens = embed_tokens
def call(
self,
input_ids=None,
inputs_embeds=None,
attention_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
head_mask=None,
encoder_head_mask=None,
past_key_values=None,
use_cache=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
training=False,
**kwargs,
):
r"""
Args:
input_ids (:obj:`tf.Tensor` of shape :obj:`(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary. Padding will be ignored by default should you
provide it.
Indices can be obtained using :class:`~transformers.BartTokenizer`. See
:meth:`transformers.PreTrainedTokenizer.encode` and :meth:`transformers.PreTrainedTokenizer.__call__`
for details.
`What are input IDs? <../glossary.html#input-ids>`__
attention_mask (:obj:`tf.Tensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Mask to avoid performing attention on padding token indices. Mask values selected in ``[0, 1]``:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
`What are attention masks? <../glossary.html#attention-mask>`__
encoder_hidden_states (:obj:`tf.Tensor` of shape :obj:`(batch_size, encoder_sequence_length, hidden_size)`, `optional`):
Sequence of hidden-states at the output of the last layer of the encoder. Used in the cross-attention
of the decoder.
encoder_attention_mask (:obj:`tf.Tensor` of shape :obj:`(batch_size, encoder_sequence_length)`, `optional`):
Mask to avoid performing cross-attention on padding tokens indices of encoder input_ids. Mask values
selected in ``[0, 1]``:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
`What are attention masks? <../glossary.html#attention-mask>`__
head_mask (:obj:`tf.Tensor` of shape :obj:`(decoder_layers, decoder_attention_heads)`, `optional`):
Mask to nullify selected heads of the attention modules. Mask values selected in ``[0, 1]``:
- 1 indicates the head is **not masked**,
- 0 indicates the heas is **masked**.
encoder_head_mask (:obj:`tf.Tensor` of shape :obj:`(encoder_layers, encoder_attention_heads)`, `optional`):
Mask to nullify selected heads of the attention modules in encoder to avoid performing cross-attention
on hidden heads. Mask values selected in ``[0, 1]``:
- 1 indicates the head is **not masked**,
- 0 indicates the heas is **masked**.
past_key_values (:obj:`Tuple[Tuple[tf.Tensor]]` of length :obj:`config.n_layers` with each tuple having 2 tuples each of which has 2 tensors of shape :obj:`(batch_size, num_heads, sequence_length - 1, embed_size_per_head)`):
Contains precomputed key and value hidden-states of the attention blocks. Can be used to speed up
decoding.
If :obj:`past_key_values` are used, the user can optionally input only the last
:obj:`decoder_input_ids` (those that don't have their past key value states given to this model) of
shape :obj:`(batch_size, 1)` instead of all :obj:`decoder_input_ids`` of shape :obj:`(batch_size,
sequence_length)`.
inputs_embeds (:obj:`tf.Tensor` of shape :obj:`(batch_size, sequence_length, hidden_size)`, `optional`):
Optionally, instead of passing :obj:`input_ids` you can choose to directly pass an embedded
representation. This is useful if you want more control over how to convert :obj:`input_ids` indices
into associated vectors than the model's internal embedding lookup matrix.
output_attentions (:obj:`bool`, `optional`):
Whether or not to return the attentions tensors of all attention layers. See ``attentions`` under
returned tensors for more detail.
output_hidden_states (:obj:`bool`, `optional`):
Whether or not to return the hidden states of all layers. See ``hidden_states`` under returned tensors
for more detail.
return_dict (:obj:`bool`, `optional`):
Whether or not to return a :class:`~transformers.file_utils.ModelOutput` instead of a plain tuple.
"""
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
head_mask=head_mask,
encoder_head_mask=encoder_head_mask,
inputs_embeds=inputs_embeds,
past_key_values=past_key_values,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
kwargs_call=kwargs,
)
if inputs["input_ids"] is not None and inputs["inputs_embeds"] is not None:
raise ValueError("You cannot specify both decoder_input_ids and decoder_inputs_embeds at the same time")
elif inputs["input_ids"] is not None:
input_shape = shape_list(inputs["input_ids"])
elif inputs["inputs_embeds"] is not None:
input_shape = shape_list(inputs["inputs_embeds"])[:-1]
else:
raise ValueError("You have to specify either decoder_input_ids or decoder_inputs_embeds")
past_key_values_length = (
shape_list(inputs["past_key_values"][0][0])[2] if inputs["past_key_values"] is not None else 0
)
# embed positions
positions = self.embed_positions(input_shape, past_key_values_length)
if inputs["inputs_embeds"] is None:
inputs["inputs_embeds"] = self.embed_tokens(inputs["input_ids"]) * self.embed_scale
hidden_states = inputs["inputs_embeds"]
# [bsz, seq_len] -> [bsz, 1, tgt_seq_len, src_seq_len]
if input_shape[-1] > 1:
combined_attention_mask = _make_causal_mask(input_shape, past_key_values_length=past_key_values_length)
else:
combined_attention_mask = _expand_mask(
tf.ones((input_shape[0], input_shape[1] + past_key_values_length)), tgt_len=input_shape[-1]
)
if inputs["attention_mask"] is not None:
combined_attention_mask = combined_attention_mask + _expand_mask(
inputs["attention_mask"], tgt_len=input_shape[-1]
)
if inputs["encoder_hidden_states"] is not None and inputs["encoder_attention_mask"] is not None:
# [bsz, seq_len] -> [bsz, 1, tgt_seq_len, src_seq_len]
inputs["encoder_attention_mask"] = _expand_mask(inputs["encoder_attention_mask"], tgt_len=input_shape[-1])
hidden_states = self.layernorm_embedding(hidden_states + positions)
hidden_states = self.dropout(hidden_states, training=inputs["training"])
# decoder layers
all_hidden_states = () if inputs["output_hidden_states"] else None
all_self_attns = () if inputs["output_attentions"] else None
present_key_values = () if inputs["use_cache"] else None
# check if head_mask has a correct number of layers specified if desired
# The tf.debugging asserts are not compliant with XLA then they
# have to be disabled in other modes than eager.
if inputs["head_mask"] is not None and tf.executing_eagerly():
tf.debugging.assert_equal(
shape_list(inputs["head_mask"])[0],
len(self.layers),
message=f"The head_mask should be specified for {len(self.layers)} layers, but it is for {shape_list(inputs['head_mask'])[0]}.",
)
for idx, decoder_layer in enumerate(self.layers):
# add LayerDrop (see https://arxiv.org/abs/1909.11556 for description)
if inputs["output_hidden_states"]:
all_hidden_states += (hidden_states,)
dropout_probability = random.uniform(0, 1)
if inputs["training"] and (dropout_probability < self.layerdrop):
continue
past_key_value = inputs["past_key_values"][idx] if inputs["past_key_values"] is not None else None
hidden_states, layer_self_attn, present_key_value = decoder_layer(
hidden_states,
attention_mask=combined_attention_mask,
encoder_hidden_states=inputs["encoder_hidden_states"],
encoder_attention_mask=inputs["encoder_attention_mask"],
layer_head_mask=inputs["head_mask"][idx] if inputs["head_mask"] is not None else None,
encoder_layer_head_mask=inputs["encoder_head_mask"][idx]
if inputs["encoder_head_mask"] is not None
else None,
past_key_value=past_key_value,
)
if inputs["use_cache"]:
present_key_values += (present_key_value,)
if inputs["output_attentions"]:
all_self_attns += (layer_self_attn,)
if inputs["output_hidden_states"]:
all_hidden_states += (hidden_states,)
if inputs["output_attentions"]:
all_self_attns = list(all_self_attns)
if inputs["use_cache"]:
present_key_values = (inputs["encoder_hidden_states"], present_key_values)
if not inputs["return_dict"]:
return hidden_states, present_key_values, all_hidden_states, all_self_attns
else:
return TFBaseModelOutputWithPast(
last_hidden_state=hidden_states,
past_key_values=present_key_values,
hidden_states=all_hidden_states,
attentions=all_self_attns,
)
@keras_serializable
class TFBartMainLayer(tf.keras.layers.Layer):
config_class = BartConfig
def __init__(self, config: BartConfig, load_weight_prefix=None, **kwargs):
super().__init__(**kwargs)
self.config = config
self.shared = TFSharedEmbeddings(config.vocab_size, config.d_model, config.pad_token_id, name="model.shared")
# set tf scope correctly
if load_weight_prefix is None:
load_weight_prefix = "model.shared"
with tf.compat.v1.variable_scope(load_weight_prefix) as shared_abs_scope_name:
pass
# Wraps layer to avoid problems with weight restoring and ensuring we're in the correct TF scope.
embed_tokens = TFWrappedEmbeddings(self.shared, abs_scope_name=shared_abs_scope_name)
embed_tokens.vocab_size = self.shared.vocab_size
embed_tokens.hidden_size = self.shared.hidden_size
self.encoder = TFBartEncoder(config, embed_tokens, name="encoder")
self.decoder = TFBartDecoder(config, embed_tokens, name="decoder")
def get_input_embeddings(self):
return self.shared
def set_input_embeddings(self, new_embeddings):
self.shared.weight = new_embeddings
self.shared.vocab_size = self.shared.weight.shape[0]
# retrieve correct absolute scope for embed token wrapper
with tf.compat.v1.variable_scope("model.shared") as shared_abs_scope_name:
pass
# Wraps layer to avoid problems with weight restoring and ensuring we're in the correct TF scope.
embed_tokens = TFWrappedEmbeddings(self.shared, abs_scope_name=shared_abs_scope_name)
self.encoder.set_embed_tokens(embed_tokens)
self.decoder.set_embed_tokens(embed_tokens)
def call(
self,
input_ids=None,
attention_mask=None,
decoder_input_ids=None,
decoder_attention_mask=None,
head_mask=None,
decoder_head_mask=None,
encoder_outputs: Optional[Union[Tuple, TFBaseModelOutput]] = None,
past_key_values=None,
inputs_embeds=None,
decoder_inputs_embeds=None,
use_cache=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
training=False,
**kwargs
):
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
head_mask=head_mask,
decoder_head_mask=decoder_head_mask,
encoder_outputs=encoder_outputs,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
decoder_inputs_embeds=decoder_inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
kwargs_call=kwargs,
)
if inputs["decoder_input_ids"] is None and inputs["decoder_inputs_embeds"] is None:
inputs["use_cache"] = False
inputs["output_hidden_states"] = (
inputs["output_hidden_states"]
if inputs["output_hidden_states"] is not None
else self.config.output_hidden_states
)
if inputs["decoder_input_ids"] is None and inputs["input_ids"] is not None:
inputs["decoder_input_ids"] = shift_tokens_right(
inputs["input_ids"], self.config.pad_token_id, self.config.decoder_start_token_id
)
if inputs["encoder_outputs"] is None:
inputs["encoder_outputs"] = self.encoder(
input_ids=inputs["input_ids"],
attention_mask=inputs["attention_mask"],
head_mask=inputs["head_mask"],
inputs_embeds=inputs["inputs_embeds"],
output_attentions=inputs["output_attentions"],
output_hidden_states=inputs["output_hidden_states"],
return_dict=inputs["return_dict"],
training=inputs["training"],
)
# If the user passed a tuple for encoder_outputs, we wrap it in a TFBaseModelOutput when return_dict=True
elif inputs["return_dict"] and not isinstance(inputs["encoder_outputs"], TFBaseModelOutput):
inputs["encoder_outputs"] = TFBaseModelOutput(
last_hidden_state=inputs["encoder_outputs"][0],
hidden_states=inputs["encoder_outputs"][1] if len(inputs["encoder_outputs"]) > 1 else None,
attentions=inputs["encoder_outputs"][2] if len(inputs["encoder_outputs"]) > 2 else None,
)
# If the user passed a TFBaseModelOutput for encoder_outputs, we wrap it in a tuple when return_dict=False
elif not inputs["return_dict"] and not isinstance(inputs["encoder_outputs"], tuple):
inputs["encoder_outputs"] = inputs["encoder_outputs"].to_tuple()
decoder_outputs = self.decoder(
inputs["decoder_input_ids"],
attention_mask=inputs["decoder_attention_mask"],
encoder_hidden_states=inputs["encoder_outputs"][0],
encoder_attention_mask=inputs["attention_mask"],
head_mask=inputs["decoder_head_mask"],
encoder_head_mask=inputs["head_mask"],
past_key_values=inputs["past_key_values"],
inputs_embeds=inputs["decoder_inputs_embeds"],
use_cache=inputs["use_cache"],
output_attentions=inputs["output_attentions"],
output_hidden_states=inputs["output_hidden_states"],
return_dict=inputs["return_dict"],
training=inputs["training"],
)
if not inputs["return_dict"]:
return decoder_outputs + inputs["encoder_outputs"]
return TFSeq2SeqModelOutput(
last_hidden_state=decoder_outputs.last_hidden_state,
past_key_values=decoder_outputs.past_key_values,
decoder_hidden_states=decoder_outputs.hidden_states,
decoder_attentions=decoder_outputs.attentions,
encoder_last_hidden_state=inputs["encoder_outputs"].last_hidden_state,
encoder_hidden_states=inputs["encoder_outputs"].hidden_states,
encoder_attentions=inputs["encoder_outputs"].attentions,
)
@add_start_docstrings(
"The bare BART Model outputting raw hidden-states without any specific head on top.",
BART_START_DOCSTRING,
)
class TFBartModel(TFBartPretrainedModel):
_requires_load_weight_prefix = True
def __init__(self, config: BartConfig, load_weight_prefix=None, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.model = TFBartMainLayer(config, load_weight_prefix=load_weight_prefix, name="model")
def get_encoder(self):
return self.model.encoder
def get_decoder(self):
return self.model.decoder
@add_start_docstrings_to_model_forward(BART_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFSeq2SeqModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids=None,
attention_mask=None,
decoder_input_ids=None,
decoder_attention_mask=None,
head_mask=None,
decoder_head_mask=None,
encoder_outputs: Optional[Union[Tuple, TFBaseModelOutput]] = None,
past_key_values=None,
inputs_embeds=None,
decoder_inputs_embeds=None,
use_cache=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
training=False,
**kwargs
):
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
head_mask=head_mask,
decoder_head_mask=decoder_head_mask,
encoder_outputs=encoder_outputs,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
decoder_inputs_embeds=decoder_inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
kwargs_call=kwargs,
)
outputs = self.model(
input_ids=inputs["input_ids"],
attention_mask=inputs["attention_mask"],
decoder_input_ids=inputs["decoder_input_ids"],
decoder_attention_mask=inputs["decoder_attention_mask"],
head_mask=inputs["head_mask"],
decoder_head_mask=inputs["decoder_head_mask"],
encoder_outputs=inputs["encoder_outputs"],
past_key_values=inputs["past_key_values"],
inputs_embeds=inputs["inputs_embeds"],
decoder_inputs_embeds=inputs["decoder_inputs_embeds"],
use_cache=inputs["use_cache"],
output_attentions=inputs["output_attentions"],
output_hidden_states=inputs["output_hidden_states"],
return_dict=inputs["return_dict"],
training=inputs["training"],
)
return outputs
def serving_output(self, output):
pkv = tf.tuple(output.past_key_values)[1] if self.config.use_cache else None
dec_hs = tf.convert_to_tensor(output.decoder_hidden_states) if self.config.output_hidden_states else None
dec_attns = tf.convert_to_tensor(output.decoder_attentions) if self.config.output_attentions else None
enc_hs = tf.convert_to_tensor(output.encoder_hidden_states) if self.config.output_hidden_states else None
enc_attns = tf.convert_to_tensor(output.encoder_attentions) if self.config.output_attentions else None
return TFSeq2SeqModelOutput(
last_hidden_state=output.last_hidden_state,
past_key_values=pkv,
decoder_hidden_states=dec_hs,
decoder_attentions=dec_attns,
encoder_last_hidden_state=output.encoder_last_hidden_state,
encoder_hidden_states=enc_hs,
encoder_attentions=enc_attns,
)
@add_start_docstrings(
"The BART Model with a language modeling head. Can be used for summarization.",
BART_START_DOCSTRING,
)
class TFBartForConditionalGeneration(TFBartPretrainedModel, TFCausalLanguageModelingLoss):
_keys_to_ignore_on_load_unexpected = [
r"model.encoder.embed_tokens.weight",
r"model.decoder.embed_tokens.weight",
]
_requires_load_weight_prefix = True
def __init__(self, config, load_weight_prefix=None, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.model = TFBartMainLayer(config, load_weight_prefix=load_weight_prefix, name="model")
self.use_cache = config.use_cache
# final_bias_logits is registered as a buffer in pytorch, so not trainable for the the sake of consistency.
self.final_logits_bias = self.add_weight(
name="final_logits_bias", shape=[1, config.vocab_size], initializer="zeros", trainable=False
)
def get_decoder(self):
return self.model.decoder
def get_encoder(self):
return self.model.encoder
def get_output_embeddings(self):
return self.get_input_embeddings()
def set_output_embeddings(self, value):
self.set_input_embeddings(value)
def get_bias(self):
return {"final_logits_bias": self.final_logits_bias}
def set_bias(self, value):
self.final_logits_bias = value["final_logits_bias"]
@add_start_docstrings_to_model_forward(BART_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=TFSeq2SeqLMOutput, config_class=_CONFIG_FOR_DOC)
@add_end_docstrings(BART_GENERATION_EXAMPLE)
def call(
self,
input_ids=None,
attention_mask=None,
decoder_input_ids=None,
decoder_attention_mask=None,
head_mask=None,
decoder_head_mask=None,
encoder_outputs: Optional[TFBaseModelOutput] = None,
past_key_values=None,
inputs_embeds=None,
decoder_inputs_embeds=None,
use_cache=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
labels=None,
training=False,
**kwargs,
):
r"""
labels (:obj:`tf.Tensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Labels for computing the masked language modeling loss. Indices should either be in ``[0, ...,
config.vocab_size]`` or -100 (see ``input_ids`` docstring). Tokens with indices set to ``-100`` are ignored
(masked), the loss is only computed for the tokens with labels in ``[0, ..., config.vocab_size]``.
Returns:
"""
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
decoder_input_ids=decoder_input_ids,
decoder_attention_mask=decoder_attention_mask,
head_mask=head_mask,
decoder_head_mask=decoder_head_mask,
encoder_outputs=encoder_outputs,
past_key_values=past_key_values,
inputs_embeds=inputs_embeds,
decoder_inputs_embeds=decoder_inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
labels=labels,
training=training,
kwargs_call=kwargs,
)
if inputs["labels"] is not None:
inputs["labels"] = tf.where(
inputs["labels"] == self.config.pad_token_id,
tf.fill(shape_list(inputs["labels"]), -100),
inputs["labels"],
)
inputs["use_cache"] = False
if inputs["decoder_input_ids"] is None:
inputs["decoder_input_ids"] = shift_tokens_right(
inputs["labels"], self.config.pad_token_id, self.config.decoder_start_token_id
)
outputs = self.model(
inputs["input_ids"],
attention_mask=inputs["attention_mask"],
decoder_input_ids=inputs["decoder_input_ids"],
encoder_outputs=inputs["encoder_outputs"],
decoder_attention_mask=inputs["decoder_attention_mask"],
head_mask=inputs["head_mask"],
decoder_head_mask=inputs["decoder_head_mask"],
past_key_values=inputs["past_key_values"],
inputs_embeds=inputs["inputs_embeds"],
decoder_inputs_embeds=inputs["decoder_inputs_embeds"],
use_cache=inputs["use_cache"],
output_attentions=inputs["output_attentions"],
output_hidden_states=inputs["output_hidden_states"],
return_dict=inputs["return_dict"],
training=inputs["training"],
)
lm_logits = self.model.shared(outputs[0], mode="linear")
lm_logits = lm_logits + self.final_logits_bias
masked_lm_loss = None if inputs["labels"] is None else self.compute_loss(inputs["labels"], lm_logits)
if not inputs["return_dict"]:
output = (lm_logits,) + outputs[1:]
return ((masked_lm_loss,) + output) if masked_lm_loss is not None else output
return TFSeq2SeqLMOutput(
loss=masked_lm_loss,
logits=lm_logits,
past_key_values=outputs.past_key_values, # index 1 of d outputs
decoder_hidden_states=outputs.decoder_hidden_states, # index 2 of d outputs
decoder_attentions=outputs.decoder_attentions, # index 3 of d outputs
encoder_last_hidden_state=outputs.encoder_last_hidden_state, # index 0 of encoder outputs
encoder_hidden_states=outputs.encoder_hidden_states, # 1 of e out
encoder_attentions=outputs.encoder_attentions, # 2 of e out
)
def serving_output(self, output):
pkv = tf.tuple(output.past_key_values)[1] if self.config.use_cache else None
dec_hs = tf.convert_to_tensor(output.decoder_hidden_states) if self.config.output_hidden_states else None
dec_attns = tf.convert_to_tensor(output.decoder_attentions) if self.config.output_attentions else None
enc_hs = tf.convert_to_tensor(output.encoder_hidden_states) if self.config.output_hidden_states else None
enc_attns = tf.convert_to_tensor(output.encoder_attentions) if self.config.output_attentions else None
return TFSeq2SeqLMOutput(
logits=output.logits,
past_key_values=pkv,
decoder_hidden_states=dec_hs,
decoder_attentions=dec_attns,
encoder_last_hidden_state=output.encoder_last_hidden_state,
encoder_hidden_states=enc_hs,
encoder_attentions=enc_attns,
)
def prepare_inputs_for_generation(
self,
decoder_input_ids,
past,
attention_mask,
head_mask=None,
use_cache=None,
**kwargs,
) -> Dict:
assert past is not None and len(past) in {1, 2}, f"past has to be an iterable of length 1,2 got {past}"
if len(past) == 1:
assert isinstance(past[0], tf.Tensor), f"`past[0]` has to be of type `tf.Tensor`, but is {type(past[0])}"
encoder_outputs = TFBaseModelOutput(last_hidden_state=past[0])
past_key_values = None
else:
assert (
len(past) == 2
), "`past` has to be of length 2 with the encoder_outputs at the first position and past_key_values at the second position."
encoder_outputs, past_key_values = past
if isinstance(encoder_outputs, tuple):
assert isinstance(
encoder_outputs[0], tf.Tensor
), f"`encoder_outputs[0]` has to be of type `tf.Tensor`, but is {type(encoder_outputs[0])}"
encoder_outputs = TFBaseModelOutput(last_hidden_state=encoder_outputs[0])
elif isinstance(encoder_outputs, tf.Tensor):
encoder_outputs = TFBaseModelOutput(last_hidden_state=encoder_outputs)
assert (
past_key_values
), f"decoder cached states must be truthy. got {past_key_values} from the 2nd element of past"
decoder_input_ids = decoder_input_ids[:, -1:]
assert isinstance(
encoder_outputs, TFBaseModelOutput
), f"encoder_outputs should be a TFBaseModelOutput, Instead got {type(encoder_outputs)}."
return {
"input_ids": None, # encoder_outputs is defined. input_ids not needed
"encoder_outputs": encoder_outputs,
"past_key_values": past_key_values,
"decoder_input_ids": decoder_input_ids,
"attention_mask": attention_mask,
"head_mask": head_mask,
"use_cache": use_cache, # change this to avoid caching (presumably for debugging)
}
@staticmethod
def _reorder_cache(past, beam_idx):
if len(past) == 1:
return past
past_key_values = past[1]
reordered_past = ()
for layer_past_key_values in past_key_values:
reordered_past += (
tuple(tf.gather(layer_past_key_value, beam_idx) for layer_past_key_value in layer_past_key_values[:2])
+ layer_past_key_values[2:],
)
return (past[0], reordered_past)
|
AdaMix/src/transformers/models/bart/modeling_tf_bart.py/0
|
{
"file_path": "AdaMix/src/transformers/models/bart/modeling_tf_bart.py",
"repo_id": "AdaMix",
"token_count": 30206
}
| 49 |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
This script can be used to convert a head-less TF2.x Bert model to PyTorch, as published on the official GitHub:
https://github.com/tensorflow/models/tree/master/official/nlp/bert
TF2.x uses different variable names from the original BERT (TF 1.4) implementation. The script re-maps the TF2.x Bert
weight names to the original names, so the model can be imported with Huggingface/transformer.
You may adapt this script to include classification/MLM/NSP/etc. heads.
"""
import argparse
import os
import re
import tensorflow as tf
import torch
from transformers import BertConfig, BertModel
from transformers.utils import logging
logging.set_verbosity_info()
logger = logging.get_logger(__name__)
def load_tf2_weights_in_bert(model, tf_checkpoint_path, config):
tf_path = os.path.abspath(tf_checkpoint_path)
logger.info("Converting TensorFlow checkpoint from {}".format(tf_path))
# Load weights from TF model
init_vars = tf.train.list_variables(tf_path)
names = []
arrays = []
layer_depth = []
for full_name, shape in init_vars:
# logger.info("Loading TF weight {} with shape {}".format(name, shape))
name = full_name.split("/")
if full_name == "_CHECKPOINTABLE_OBJECT_GRAPH" or name[0] in ["global_step", "save_counter"]:
logger.info(f"Skipping non-model layer {full_name}")
continue
if "optimizer" in full_name:
logger.info(f"Skipping optimization layer {full_name}")
continue
if name[0] == "model":
# ignore initial 'model'
name = name[1:]
# figure out how many levels deep the name is
depth = 0
for _name in name:
if _name.startswith("layer_with_weights"):
depth += 1
else:
break
layer_depth.append(depth)
# read data
array = tf.train.load_variable(tf_path, full_name)
names.append("/".join(name))
arrays.append(array)
logger.info(f"Read a total of {len(arrays):,} layers")
# Sanity check
if len(set(layer_depth)) != 1:
raise ValueError(f"Found layer names with different depths (layer depth {list(set(layer_depth))})")
layer_depth = list(set(layer_depth))[0]
if layer_depth != 1:
raise ValueError(
"The model contains more than just the embedding/encoder layers. This script does not handle MLM/NSP heads."
)
# convert layers
logger.info("Converting weights...")
for full_name, array in zip(names, arrays):
name = full_name.split("/")
pointer = model
trace = []
for i, m_name in enumerate(name):
if m_name == ".ATTRIBUTES":
# variable names end with .ATTRIBUTES/VARIABLE_VALUE
break
if m_name.startswith("layer_with_weights"):
layer_num = int(m_name.split("-")[-1])
if layer_num <= 2:
# embedding layers
# layer_num 0: word_embeddings
# layer_num 1: position_embeddings
# layer_num 2: token_type_embeddings
continue
elif layer_num == 3:
# embedding LayerNorm
trace.extend(["embeddings", "LayerNorm"])
pointer = getattr(pointer, "embeddings")
pointer = getattr(pointer, "LayerNorm")
elif layer_num > 3 and layer_num < config.num_hidden_layers + 4:
# encoder layers
trace.extend(["encoder", "layer", str(layer_num - 4)])
pointer = getattr(pointer, "encoder")
pointer = getattr(pointer, "layer")
pointer = pointer[layer_num - 4]
elif layer_num == config.num_hidden_layers + 4:
# pooler layer
trace.extend(["pooler", "dense"])
pointer = getattr(pointer, "pooler")
pointer = getattr(pointer, "dense")
elif m_name == "embeddings":
trace.append("embeddings")
pointer = getattr(pointer, "embeddings")
if layer_num == 0:
trace.append("word_embeddings")
pointer = getattr(pointer, "word_embeddings")
elif layer_num == 1:
trace.append("position_embeddings")
pointer = getattr(pointer, "position_embeddings")
elif layer_num == 2:
trace.append("token_type_embeddings")
pointer = getattr(pointer, "token_type_embeddings")
else:
raise ValueError("Unknown embedding layer with name {full_name}")
trace.append("weight")
pointer = getattr(pointer, "weight")
elif m_name == "_attention_layer":
# self-attention layer
trace.extend(["attention", "self"])
pointer = getattr(pointer, "attention")
pointer = getattr(pointer, "self")
elif m_name == "_attention_layer_norm":
# output attention norm
trace.extend(["attention", "output", "LayerNorm"])
pointer = getattr(pointer, "attention")
pointer = getattr(pointer, "output")
pointer = getattr(pointer, "LayerNorm")
elif m_name == "_attention_output_dense":
# output attention dense
trace.extend(["attention", "output", "dense"])
pointer = getattr(pointer, "attention")
pointer = getattr(pointer, "output")
pointer = getattr(pointer, "dense")
elif m_name == "_output_dense":
# output dense
trace.extend(["output", "dense"])
pointer = getattr(pointer, "output")
pointer = getattr(pointer, "dense")
elif m_name == "_output_layer_norm":
# output dense
trace.extend(["output", "LayerNorm"])
pointer = getattr(pointer, "output")
pointer = getattr(pointer, "LayerNorm")
elif m_name == "_key_dense":
# attention key
trace.append("key")
pointer = getattr(pointer, "key")
elif m_name == "_query_dense":
# attention query
trace.append("query")
pointer = getattr(pointer, "query")
elif m_name == "_value_dense":
# attention value
trace.append("value")
pointer = getattr(pointer, "value")
elif m_name == "_intermediate_dense":
# attention intermediate dense
trace.extend(["intermediate", "dense"])
pointer = getattr(pointer, "intermediate")
pointer = getattr(pointer, "dense")
elif m_name == "_output_layer_norm":
# output layer norm
trace.append("output")
pointer = getattr(pointer, "output")
# weights & biases
elif m_name in ["bias", "beta"]:
trace.append("bias")
pointer = getattr(pointer, "bias")
elif m_name in ["kernel", "gamma"]:
trace.append("weight")
pointer = getattr(pointer, "weight")
else:
logger.warning(f"Ignored {m_name}")
# for certain layers reshape is necessary
trace = ".".join(trace)
if re.match(r"(\S+)\.attention\.self\.(key|value|query)\.(bias|weight)", trace) or re.match(
r"(\S+)\.attention\.output\.dense\.weight", trace
):
array = array.reshape(pointer.data.shape)
if "kernel" in full_name:
array = array.transpose()
if pointer.shape == array.shape:
pointer.data = torch.from_numpy(array)
else:
raise ValueError(
f"Shape mismatch in layer {full_name}: Model expects shape {pointer.shape} but layer contains shape: {array.shape}"
)
logger.info(f"Successfully set variable {full_name} to PyTorch layer {trace}")
return model
def convert_tf2_checkpoint_to_pytorch(tf_checkpoint_path, config_path, pytorch_dump_path):
# Instantiate model
logger.info(f"Loading model based on config from {config_path}...")
config = BertConfig.from_json_file(config_path)
model = BertModel(config)
# Load weights from checkpoint
logger.info(f"Loading weights from checkpoint {tf_checkpoint_path}...")
load_tf2_weights_in_bert(model, tf_checkpoint_path, config)
# Save pytorch-model
logger.info(f"Saving PyTorch model to {pytorch_dump_path}...")
torch.save(model.state_dict(), pytorch_dump_path)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument(
"--tf_checkpoint_path", type=str, required=True, help="Path to the TensorFlow 2.x checkpoint path."
)
parser.add_argument(
"--bert_config_file",
type=str,
required=True,
help="The config json file corresponding to the BERT model. This specifies the model architecture.",
)
parser.add_argument(
"--pytorch_dump_path",
type=str,
required=True,
help="Path to the output PyTorch model (must include filename).",
)
args = parser.parse_args()
convert_tf2_checkpoint_to_pytorch(args.tf_checkpoint_path, args.bert_config_file, args.pytorch_dump_path)
|
AdaMix/src/transformers/models/bert/convert_bert_original_tf2_checkpoint_to_pytorch.py/0
|
{
"file_path": "AdaMix/src/transformers/models/bert/convert_bert_original_tf2_checkpoint_to_pytorch.py",
"repo_id": "AdaMix",
"token_count": 4716
}
| 50 |
# coding=utf-8
# Copyright 2021 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch ConvBERT model. """
import math
import os
from operator import attrgetter
import torch
import torch.utils.checkpoint
from torch import nn
from torch.nn import CrossEntropyLoss, MSELoss
from ...activations import ACT2FN, get_activation
from ...file_utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward
from ...modeling_outputs import (
BaseModelOutputWithCrossAttentions,
MaskedLMOutput,
MultipleChoiceModelOutput,
QuestionAnsweringModelOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import (
PreTrainedModel,
SequenceSummary,
apply_chunking_to_forward,
find_pruneable_heads_and_indices,
prune_linear_layer,
)
from ...utils import logging
from .configuration_convbert import ConvBertConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "YituTech/conv-bert-base"
_CONFIG_FOR_DOC = "ConvBertConfig"
_TOKENIZER_FOR_DOC = "ConvBertTokenizer"
CONVBERT_PRETRAINED_MODEL_ARCHIVE_LIST = [
"YituTech/conv-bert-base",
"YituTech/conv-bert-medium-small",
"YituTech/conv-bert-small",
# See all ConvBERT models at https://huggingface.co/models?filter=convbert
]
def load_tf_weights_in_convbert(model, config, tf_checkpoint_path):
"""Load tf checkpoints in a pytorch model."""
try:
import tensorflow as tf
except ImportError:
logger.error(
"Loading a TensorFlow model in PyTorch, requires TensorFlow to be installed. Please see "
"https://www.tensorflow.org/install/ for installation instructions."
)
raise
tf_path = os.path.abspath(tf_checkpoint_path)
logger.info("Converting TensorFlow checkpoint from {}".format(tf_path))
# Load weights from TF model
init_vars = tf.train.list_variables(tf_path)
tf_data = {}
for name, shape in init_vars:
logger.info("Loading TF weight {} with shape {}".format(name, shape))
array = tf.train.load_variable(tf_path, name)
tf_data[name] = array
param_mapping = {
"embeddings.word_embeddings.weight": "electra/embeddings/word_embeddings",
"embeddings.position_embeddings.weight": "electra/embeddings/position_embeddings",
"embeddings.token_type_embeddings.weight": "electra/embeddings/token_type_embeddings",
"embeddings.LayerNorm.weight": "electra/embeddings/LayerNorm/gamma",
"embeddings.LayerNorm.bias": "electra/embeddings/LayerNorm/beta",
"embeddings_project.weight": "electra/embeddings_project/kernel",
"embeddings_project.bias": "electra/embeddings_project/bias",
}
if config.num_groups > 1:
group_dense_name = "g_dense"
else:
group_dense_name = "dense"
for j in range(config.num_hidden_layers):
param_mapping[
f"encoder.layer.{j}.attention.self.query.weight"
] = f"electra/encoder/layer_{j}/attention/self/query/kernel"
param_mapping[
f"encoder.layer.{j}.attention.self.query.bias"
] = f"electra/encoder/layer_{j}/attention/self/query/bias"
param_mapping[
f"encoder.layer.{j}.attention.self.key.weight"
] = f"electra/encoder/layer_{j}/attention/self/key/kernel"
param_mapping[
f"encoder.layer.{j}.attention.self.key.bias"
] = f"electra/encoder/layer_{j}/attention/self/key/bias"
param_mapping[
f"encoder.layer.{j}.attention.self.value.weight"
] = f"electra/encoder/layer_{j}/attention/self/value/kernel"
param_mapping[
f"encoder.layer.{j}.attention.self.value.bias"
] = f"electra/encoder/layer_{j}/attention/self/value/bias"
param_mapping[
f"encoder.layer.{j}.attention.self.key_conv_attn_layer.depthwise.weight"
] = f"electra/encoder/layer_{j}/attention/self/conv_attn_key/depthwise_kernel"
param_mapping[
f"encoder.layer.{j}.attention.self.key_conv_attn_layer.pointwise.weight"
] = f"electra/encoder/layer_{j}/attention/self/conv_attn_key/pointwise_kernel"
param_mapping[
f"encoder.layer.{j}.attention.self.key_conv_attn_layer.bias"
] = f"electra/encoder/layer_{j}/attention/self/conv_attn_key/bias"
param_mapping[
f"encoder.layer.{j}.attention.self.conv_kernel_layer.weight"
] = f"electra/encoder/layer_{j}/attention/self/conv_attn_kernel/kernel"
param_mapping[
f"encoder.layer.{j}.attention.self.conv_kernel_layer.bias"
] = f"electra/encoder/layer_{j}/attention/self/conv_attn_kernel/bias"
param_mapping[
f"encoder.layer.{j}.attention.self.conv_out_layer.weight"
] = f"electra/encoder/layer_{j}/attention/self/conv_attn_point/kernel"
param_mapping[
f"encoder.layer.{j}.attention.self.conv_out_layer.bias"
] = f"electra/encoder/layer_{j}/attention/self/conv_attn_point/bias"
param_mapping[
f"encoder.layer.{j}.attention.output.dense.weight"
] = f"electra/encoder/layer_{j}/attention/output/dense/kernel"
param_mapping[
f"encoder.layer.{j}.attention.output.LayerNorm.weight"
] = f"electra/encoder/layer_{j}/attention/output/LayerNorm/gamma"
param_mapping[
f"encoder.layer.{j}.attention.output.dense.bias"
] = f"electra/encoder/layer_{j}/attention/output/dense/bias"
param_mapping[
f"encoder.layer.{j}.attention.output.LayerNorm.bias"
] = f"electra/encoder/layer_{j}/attention/output/LayerNorm/beta"
param_mapping[
f"encoder.layer.{j}.intermediate.dense.weight"
] = f"electra/encoder/layer_{j}/intermediate/{group_dense_name}/kernel"
param_mapping[
f"encoder.layer.{j}.intermediate.dense.bias"
] = f"electra/encoder/layer_{j}/intermediate/{group_dense_name}/bias"
param_mapping[
f"encoder.layer.{j}.output.dense.weight"
] = f"electra/encoder/layer_{j}/output/{group_dense_name}/kernel"
param_mapping[
f"encoder.layer.{j}.output.dense.bias"
] = f"electra/encoder/layer_{j}/output/{group_dense_name}/bias"
param_mapping[
f"encoder.layer.{j}.output.LayerNorm.weight"
] = f"electra/encoder/layer_{j}/output/LayerNorm/gamma"
param_mapping[f"encoder.layer.{j}.output.LayerNorm.bias"] = f"electra/encoder/layer_{j}/output/LayerNorm/beta"
for param in model.named_parameters():
param_name = param[0]
retriever = attrgetter(param_name)
result = retriever(model)
tf_name = param_mapping[param_name]
value = torch.from_numpy(tf_data[tf_name])
logger.info(f"TF: {tf_name}, PT: {param_name} ")
if tf_name.endswith("/kernel"):
if not tf_name.endswith("/intermediate/g_dense/kernel"):
if not tf_name.endswith("/output/g_dense/kernel"):
value = value.T
if tf_name.endswith("/depthwise_kernel"):
value = value.permute(1, 2, 0) # 2, 0, 1
if tf_name.endswith("/pointwise_kernel"):
value = value.permute(2, 1, 0) # 2, 1, 0
if tf_name.endswith("/conv_attn_key/bias"):
value = value.unsqueeze(-1)
result.data = value
return model
class ConvBertEmbeddings(nn.Module):
"""Construct the embeddings from word, position and token_type embeddings."""
def __init__(self, config):
super().__init__()
self.word_embeddings = nn.Embedding(config.vocab_size, config.embedding_size, padding_idx=config.pad_token_id)
self.position_embeddings = nn.Embedding(config.max_position_embeddings, config.embedding_size)
self.token_type_embeddings = nn.Embedding(config.type_vocab_size, config.embedding_size)
# self.LayerNorm is not snake-cased to stick with TensorFlow model variable name and be able to load
# any TensorFlow checkpoint file
self.LayerNorm = nn.LayerNorm(config.embedding_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
# position_ids (1, len position emb) is contiguous in memory and exported when serialized
self.register_buffer("position_ids", torch.arange(config.max_position_embeddings).expand((1, -1)))
def forward(self, input_ids=None, token_type_ids=None, position_ids=None, inputs_embeds=None):
if input_ids is not None:
input_shape = input_ids.size()
else:
input_shape = inputs_embeds.size()[:-1]
seq_length = input_shape[1]
if position_ids is None:
position_ids = self.position_ids[:, :seq_length]
if token_type_ids is None:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=self.position_ids.device)
if inputs_embeds is None:
inputs_embeds = self.word_embeddings(input_ids)
position_embeddings = self.position_embeddings(position_ids)
token_type_embeddings = self.token_type_embeddings(token_type_ids)
embeddings = inputs_embeds + position_embeddings + token_type_embeddings
embeddings = self.LayerNorm(embeddings)
embeddings = self.dropout(embeddings)
return embeddings
class ConvBertPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = ConvBertConfig
load_tf_weights = load_tf_weights_in_convbert
base_model_prefix = "convbert"
authorized_missing_keys = [r"position_ids"]
authorized_unexpected_keys = [r"convbert\.embeddings_project\.weight", r"convbert\.embeddings_project\.bias"]
def _init_weights(self, module):
""" Initialize the weights """
if isinstance(module, nn.Linear):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
class SeparableConv1D(nn.Module):
"""This class implements separable convolution, i.e. a depthwise and a pointwise layer"""
def __init__(self, config, input_filters, output_filters, kernel_size, **kwargs):
super().__init__()
self.depthwise = nn.Conv1d(
input_filters,
input_filters,
kernel_size=kernel_size,
groups=input_filters,
padding=kernel_size // 2,
bias=False,
)
self.pointwise = nn.Conv1d(input_filters, output_filters, kernel_size=1, bias=False)
self.bias = nn.Parameter(torch.zeros(output_filters, 1))
self.depthwise.weight.data.normal_(mean=0.0, std=config.initializer_range)
self.pointwise.weight.data.normal_(mean=0.0, std=config.initializer_range)
def forward(self, hidden_states):
x = self.depthwise(hidden_states)
x = self.pointwise(x)
x += self.bias
return x
class ConvBertSelfAttention(nn.Module):
def __init__(self, config):
super().__init__()
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
"The hidden size (%d) is not a multiple of the number of attention "
"heads (%d)" % (config.hidden_size, config.num_attention_heads)
)
new_num_attention_heads = config.num_attention_heads // config.head_ratio
if new_num_attention_heads < 1:
self.head_ratio = config.num_attention_heads
self.num_attention_heads = 1
else:
self.num_attention_heads = new_num_attention_heads
self.head_ratio = config.head_ratio
self.conv_kernel_size = config.conv_kernel_size
assert (
config.hidden_size % self.num_attention_heads == 0
), "hidden_size should be divisible by num_attention_heads"
self.attention_head_size = config.hidden_size // config.num_attention_heads
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query = nn.Linear(config.hidden_size, self.all_head_size)
self.key = nn.Linear(config.hidden_size, self.all_head_size)
self.value = nn.Linear(config.hidden_size, self.all_head_size)
self.key_conv_attn_layer = SeparableConv1D(
config, config.hidden_size, self.all_head_size, self.conv_kernel_size
)
self.conv_kernel_layer = nn.Linear(self.all_head_size, self.num_attention_heads * self.conv_kernel_size)
self.conv_out_layer = nn.Linear(config.hidden_size, self.all_head_size)
self.unfold = nn.Unfold(
kernel_size=[self.conv_kernel_size, 1], padding=[int((self.conv_kernel_size - 1) / 2), 0]
)
self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
def transpose_for_scores(self, x):
new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
x = x.view(*new_x_shape)
return x.permute(0, 2, 1, 3)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
output_attentions=False,
):
mixed_query_layer = self.query(hidden_states)
batch_size = hidden_states.size(0)
# If this is instantiated as a cross-attention module, the keys
# and values come from an encoder; the attention mask needs to be
# such that the encoder's padding tokens are not attended to.
if encoder_hidden_states is not None:
mixed_key_layer = self.key(encoder_hidden_states)
mixed_value_layer = self.value(encoder_hidden_states)
else:
mixed_key_layer = self.key(hidden_states)
mixed_value_layer = self.value(hidden_states)
mixed_key_conv_attn_layer = self.key_conv_attn_layer(hidden_states.transpose(1, 2))
mixed_key_conv_attn_layer = mixed_key_conv_attn_layer.transpose(1, 2)
query_layer = self.transpose_for_scores(mixed_query_layer)
key_layer = self.transpose_for_scores(mixed_key_layer)
value_layer = self.transpose_for_scores(mixed_value_layer)
conv_attn_layer = torch.multiply(mixed_key_conv_attn_layer, mixed_query_layer)
conv_kernel_layer = self.conv_kernel_layer(conv_attn_layer)
conv_kernel_layer = torch.reshape(conv_kernel_layer, [-1, self.conv_kernel_size, 1])
conv_kernel_layer = torch.softmax(conv_kernel_layer, dim=1)
conv_out_layer = self.conv_out_layer(hidden_states)
conv_out_layer = torch.reshape(conv_out_layer, [batch_size, -1, self.all_head_size])
conv_out_layer = conv_out_layer.transpose(1, 2).contiguous().unsqueeze(-1)
conv_out_layer = nn.functional.unfold(
conv_out_layer,
kernel_size=[self.conv_kernel_size, 1],
dilation=1,
padding=[(self.conv_kernel_size - 1) // 2, 0],
stride=1,
)
conv_out_layer = conv_out_layer.transpose(1, 2).reshape(
batch_size, -1, self.all_head_size, self.conv_kernel_size
)
conv_out_layer = torch.reshape(conv_out_layer, [-1, self.attention_head_size, self.conv_kernel_size])
conv_out_layer = torch.matmul(conv_out_layer, conv_kernel_layer)
conv_out_layer = torch.reshape(conv_out_layer, [-1, self.all_head_size])
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))
attention_scores = attention_scores / math.sqrt(self.attention_head_size)
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in ConvBertModel forward() function)
attention_scores = attention_scores + attention_mask
# Normalize the attention scores to probabilities.
attention_probs = torch.nn.functional.softmax(attention_scores, dim=-1)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = torch.matmul(attention_probs, value_layer)
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
conv_out = torch.reshape(conv_out_layer, [batch_size, -1, self.num_attention_heads, self.attention_head_size])
context_layer = torch.cat([context_layer, conv_out], 2)
new_context_layer_shape = context_layer.size()[:-2] + (self.head_ratio * self.all_head_size,)
context_layer = context_layer.view(*new_context_layer_shape)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
return outputs
class ConvBertSelfOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states, input_tensor):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
class ConvBertAttention(nn.Module):
def __init__(self, config):
super().__init__()
self.self = ConvBertSelfAttention(config)
self.output = ConvBertSelfOutput(config)
self.pruned_heads = set()
def prune_heads(self, heads):
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.self.num_attention_heads, self.self.attention_head_size, self.pruned_heads
)
# Prune linear layers
self.self.query = prune_linear_layer(self.self.query, index)
self.self.key = prune_linear_layer(self.self.key, index)
self.self.value = prune_linear_layer(self.self.value, index)
self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)
# Update hyper params and store pruned heads
self.self.num_attention_heads = self.self.num_attention_heads - len(heads)
self.self.all_head_size = self.self.attention_head_size * self.self.num_attention_heads
self.pruned_heads = self.pruned_heads.union(heads)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
output_attentions=False,
):
self_outputs = self.self(
hidden_states,
attention_mask,
head_mask,
encoder_hidden_states,
output_attentions,
)
attention_output = self.output(self_outputs[0], hidden_states)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
class GroupedLinearLayer(nn.Module):
def __init__(self, input_size, output_size, num_groups):
super().__init__()
self.input_size = input_size
self.output_size = output_size
self.num_groups = num_groups
self.group_in_dim = self.input_size // self.num_groups
self.group_out_dim = self.output_size // self.num_groups
self.weight = nn.Parameter(torch.Tensor(self.num_groups, self.group_in_dim, self.group_out_dim))
self.bias = nn.Parameter(torch.Tensor(output_size))
def forward(self, hidden_states):
batch_size = list(hidden_states.size())[0]
x = torch.reshape(hidden_states, [-1, self.num_groups, self.group_in_dim])
x = x.permute(1, 0, 2)
x = torch.matmul(x, self.weight)
x = x.permute(1, 0, 2)
x = torch.reshape(x, [batch_size, -1, self.output_size])
x = x + self.bias
return x
class ConvBertIntermediate(nn.Module):
def __init__(self, config):
super().__init__()
if config.num_groups == 1:
self.dense = nn.Linear(config.hidden_size, config.intermediate_size)
else:
self.dense = GroupedLinearLayer(
input_size=config.hidden_size, output_size=config.intermediate_size, num_groups=config.num_groups
)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = ACT2FN[config.hidden_act]
else:
self.intermediate_act_fn = config.hidden_act
def forward(self, hidden_states):
hidden_states = self.dense(hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
class ConvBertOutput(nn.Module):
def __init__(self, config):
super().__init__()
if config.num_groups == 1:
self.dense = nn.Linear(config.intermediate_size, config.hidden_size)
else:
self.dense = GroupedLinearLayer(
input_size=config.intermediate_size, output_size=config.hidden_size, num_groups=config.num_groups
)
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states, input_tensor):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
class ConvBertLayer(nn.Module):
def __init__(self, config):
super().__init__()
self.chunk_size_feed_forward = config.chunk_size_feed_forward
self.seq_len_dim = 1
self.attention = ConvBertAttention(config)
self.is_decoder = config.is_decoder
self.add_cross_attention = config.add_cross_attention
if self.add_cross_attention:
assert self.is_decoder, f"{self} should be used as a decoder model if cross attention is added"
self.crossattention = ConvBertAttention(config)
self.intermediate = ConvBertIntermediate(config)
self.output = ConvBertOutput(config)
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
output_attentions=False,
):
self_attention_outputs = self.attention(
hidden_states,
attention_mask,
head_mask,
output_attentions=output_attentions,
)
attention_output = self_attention_outputs[0]
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
if self.is_decoder and encoder_hidden_states is not None:
assert hasattr(
self, "crossattention"
), f"If `encoder_hidden_states` are passed, {self} has to be instantiated with cross-attention layers by setting `config.add_cross_attention=True`"
cross_attention_outputs = self.crossattention(
attention_output,
encoder_attention_mask,
head_mask,
encoder_hidden_states,
output_attentions,
)
attention_output = cross_attention_outputs[0]
outputs = outputs + cross_attention_outputs[1:] # add cross attentions if we output attention weights
layer_output = apply_chunking_to_forward(
self.feed_forward_chunk, self.chunk_size_feed_forward, self.seq_len_dim, attention_output
)
outputs = (layer_output,) + outputs
return outputs
def feed_forward_chunk(self, attention_output):
intermediate_output = self.intermediate(attention_output)
layer_output = self.output(intermediate_output, attention_output)
return layer_output
class ConvBertEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.layer = nn.ModuleList([ConvBertLayer(config) for _ in range(config.num_hidden_layers)])
def forward(
self,
hidden_states,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
output_attentions=False,
output_hidden_states=False,
return_dict=True,
):
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
all_cross_attentions = () if output_attentions and self.config.add_cross_attention else None
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
if getattr(self.config, "gradient_checkpointing", False):
def create_custom_forward(module):
def custom_forward(*inputs):
return module(*inputs, output_attentions)
return custom_forward
layer_outputs = torch.utils.checkpoint.checkpoint(
create_custom_forward(layer_module),
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
)
else:
layer_outputs = layer_module(
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states,
encoder_attention_mask,
output_attentions,
)
hidden_states = layer_outputs[0]
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if self.config.add_cross_attention:
all_cross_attentions = all_cross_attentions + (layer_outputs[2],)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(
v
for v in [hidden_states, all_hidden_states, all_self_attentions, all_cross_attentions]
if v is not None
)
return BaseModelOutputWithCrossAttentions(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
cross_attentions=all_cross_attentions,
)
class ConvBertPredictionHeadTransform(nn.Module):
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
if isinstance(config.hidden_act, str):
self.transform_act_fn = ACT2FN[config.hidden_act]
else:
self.transform_act_fn = config.hidden_act
self.LayerNorm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
def forward(self, hidden_states):
hidden_states = self.dense(hidden_states)
hidden_states = self.transform_act_fn(hidden_states)
hidden_states = self.LayerNorm(hidden_states)
return hidden_states
CONVBERT_START_DOCSTRING = r"""
This model is a PyTorch `torch.nn.Module <https://pytorch.org/docs/stable/nn.html#torch.nn.Module>`_ sub-class. Use
it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to general usage and
behavior.
Parameters:
config (:class:`~transformers.ConvBertConfig`): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the :meth:`~transformers.PreTrainedModel.from_pretrained` method to load the model
weights.
"""
CONVBERT_INPUTS_DOCSTRING = r"""
Args:
input_ids (:obj:`torch.LongTensor` of shape :obj:`{0}`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using :class:`transformers.ConvBertTokenizer`. See
:func:`transformers.PreTrainedTokenizer.encode` and :func:`transformers.PreTrainedTokenizer.__call__` for
details.
`What are input IDs? <../glossary.html#input-ids>`__
attention_mask (:obj:`torch.FloatTensor` of shape :obj:`{0}`, `optional`):
Mask to avoid performing attention on padding token indices. Mask values selected in ``[0, 1]``:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
`What are attention masks? <../glossary.html#attention-mask>`__
token_type_ids (:obj:`torch.LongTensor` of shape :obj:`{0}`, `optional`):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in ``[0,
1]``:
- 0 corresponds to a `sentence A` token,
- 1 corresponds to a `sentence B` token.
`What are token type IDs? <../glossary.html#token-type-ids>`_
position_ids (:obj:`torch.LongTensor` of shape :obj:`{0}`, `optional`):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range ``[0,
config.max_position_embeddings - 1]``.
`What are position IDs? <../glossary.html#position-ids>`_
head_mask (:obj:`torch.FloatTensor` of shape :obj:`(num_heads,)` or :obj:`(num_layers, num_heads)`, `optional`):
Mask to nullify selected heads of the self-attention modules. Mask values selected in ``[0, 1]``:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length, hidden_size)`, `optional`):
Optionally, instead of passing :obj:`input_ids` you can choose to directly pass an embedded representation.
This is useful if you want more control over how to convert `input_ids` indices into associated vectors
than the model's internal embedding lookup matrix.
output_attentions (:obj:`bool`, `optional`):
Whether or not to return the attentions tensors of all attention layers. See ``attentions`` under returned
tensors for more detail.
output_hidden_states (:obj:`bool`, `optional`):
Whether or not to return the hidden states of all layers. See ``hidden_states`` under returned tensors for
more detail.
return_dict (:obj:`bool`, `optional`):
Whether or not to return a :class:`~transformers.file_utils.ModelOutput` instead of a plain tuple.
"""
@add_start_docstrings(
"The bare ConvBERT Model transformer outputting raw hidden-states without any specific head on top.",
CONVBERT_START_DOCSTRING,
)
class ConvBertModel(ConvBertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.embeddings = ConvBertEmbeddings(config)
if config.embedding_size != config.hidden_size:
self.embeddings_project = nn.Linear(config.embedding_size, config.hidden_size)
self.encoder = ConvBertEncoder(config)
self.config = config
self.init_weights()
def get_input_embeddings(self):
return self.embeddings.word_embeddings
def set_input_embeddings(self, value):
self.embeddings.word_embeddings = value
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
@add_start_docstrings_to_model_forward(CONVBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=BaseModelOutputWithCrossAttentions,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = input_ids.size()
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
device = input_ids.device if input_ids is not None else inputs_embeds.device
if attention_mask is None:
attention_mask = torch.ones(input_shape, device=device)
if token_type_ids is None:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=device)
extended_attention_mask = self.get_extended_attention_mask(attention_mask, input_shape, device)
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
hidden_states = self.embeddings(
input_ids=input_ids, position_ids=position_ids, token_type_ids=token_type_ids, inputs_embeds=inputs_embeds
)
if hasattr(self, "embeddings_project"):
hidden_states = self.embeddings_project(hidden_states)
hidden_states = self.encoder(
hidden_states,
attention_mask=extended_attention_mask,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
return hidden_states
class ConvBertGeneratorPredictions(nn.Module):
"""Prediction module for the generator, made up of two dense layers."""
def __init__(self, config):
super().__init__()
self.LayerNorm = nn.LayerNorm(config.embedding_size)
self.dense = nn.Linear(config.hidden_size, config.embedding_size)
def forward(self, generator_hidden_states):
hidden_states = self.dense(generator_hidden_states)
hidden_states = get_activation("gelu")(hidden_states)
hidden_states = self.LayerNorm(hidden_states)
return hidden_states
@add_start_docstrings("""ConvBERT Model with a `language modeling` head on top. """, CONVBERT_START_DOCSTRING)
class ConvBertForMaskedLM(ConvBertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.convbert = ConvBertModel(config)
self.generator_predictions = ConvBertGeneratorPredictions(config)
self.generator_lm_head = nn.Linear(config.embedding_size, config.vocab_size)
self.init_weights()
def get_output_embeddings(self):
return self.generator_lm_head
def set_output_embeddings(self, word_embeddings):
self.generator_lm_head = word_embeddings
@add_start_docstrings_to_model_forward(CONVBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=MaskedLMOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
labels=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
r"""
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Labels for computing the masked language modeling loss. Indices should be in ``[-100, 0, ...,
config.vocab_size]`` (see ``input_ids`` docstring) Tokens with indices set to ``-100`` are ignored
(masked), the loss is only computed for the tokens with labels in ``[0, ..., config.vocab_size]``
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
generator_hidden_states = self.convbert(
input_ids,
attention_mask,
token_type_ids,
position_ids,
head_mask,
inputs_embeds,
output_attentions,
output_hidden_states,
return_dict,
)
generator_sequence_output = generator_hidden_states[0]
prediction_scores = self.generator_predictions(generator_sequence_output)
prediction_scores = self.generator_lm_head(prediction_scores)
loss = None
# Masked language modeling softmax layer
if labels is not None:
loss_fct = nn.CrossEntropyLoss() # -100 index = padding token
loss = loss_fct(prediction_scores.view(-1, self.config.vocab_size), labels.view(-1))
if not return_dict:
output = (prediction_scores,) + generator_hidden_states[1:]
return ((loss,) + output) if loss is not None else output
return MaskedLMOutput(
loss=loss,
logits=prediction_scores,
hidden_states=generator_hidden_states.hidden_states,
attentions=generator_hidden_states.attentions,
)
class ConvBertClassificationHead(nn.Module):
"""Head for sentence-level classification tasks."""
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.out_proj = nn.Linear(config.hidden_size, config.num_labels)
self.config = config
def forward(self, hidden_states, **kwargs):
x = hidden_states[:, 0, :] # take <s> token (equiv. to [CLS])
x = self.dropout(x)
x = self.dense(x)
x = ACT2FN[self.config.hidden_act](x)
x = self.dropout(x)
x = self.out_proj(x)
return x
@add_start_docstrings(
"""
ConvBERT Model transformer with a sequence classification/regression head on top (a linear layer on top of the
pooled output) e.g. for GLUE tasks.
""",
CONVBERT_START_DOCSTRING,
)
class ConvBertForSequenceClassification(ConvBertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.convbert = ConvBertModel(config)
self.classifier = ConvBertClassificationHead(config)
self.init_weights()
@add_start_docstrings_to_model_forward(CONVBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=SequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
labels=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
r"""
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for computing the sequence classification/regression loss. Indices should be in :obj:`[0, ...,
config.num_labels - 1]`. If :obj:`config.num_labels == 1` a regression loss is computed (Mean-Square loss),
If :obj:`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.convbert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
logits = self.classifier(sequence_output)
loss = None
if labels is not None:
if self.num_labels == 1:
# We are doing regression
loss_fct = MSELoss()
loss = loss_fct(logits.view(-1), labels.view(-1))
else:
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
if not return_dict:
output = (logits,) + outputs[1:]
return ((loss,) + output) if loss is not None else output
return SequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
ConvBERT Model with a multiple choice classification head on top (a linear layer on top of the pooled output and a
softmax) e.g. for RocStories/SWAG tasks.
""",
CONVBERT_START_DOCSTRING,
)
class ConvBertForMultipleChoice(ConvBertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.convbert = ConvBertModel(config)
self.sequence_summary = SequenceSummary(config)
self.classifier = nn.Linear(config.hidden_size, 1)
self.init_weights()
@add_start_docstrings_to_model_forward(
CONVBERT_INPUTS_DOCSTRING.format("batch_size, num_choices, sequence_length")
)
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=MultipleChoiceModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
labels=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
r"""
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for computing the multiple choice classification loss. Indices should be in ``[0, ...,
num_choices-1]`` where :obj:`num_choices` is the size of the second dimension of the input tensors. (See
:obj:`input_ids` above)
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
num_choices = input_ids.shape[1] if input_ids is not None else inputs_embeds.shape[1]
input_ids = input_ids.view(-1, input_ids.size(-1)) if input_ids is not None else None
attention_mask = attention_mask.view(-1, attention_mask.size(-1)) if attention_mask is not None else None
token_type_ids = token_type_ids.view(-1, token_type_ids.size(-1)) if token_type_ids is not None else None
position_ids = position_ids.view(-1, position_ids.size(-1)) if position_ids is not None else None
inputs_embeds = (
inputs_embeds.view(-1, inputs_embeds.size(-2), inputs_embeds.size(-1))
if inputs_embeds is not None
else None
)
outputs = self.convbert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
pooled_output = self.sequence_summary(sequence_output)
logits = self.classifier(pooled_output)
reshaped_logits = logits.view(-1, num_choices)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
loss = loss_fct(reshaped_logits, labels)
if not return_dict:
output = (reshaped_logits,) + outputs[1:]
return ((loss,) + output) if loss is not None else output
return MultipleChoiceModelOutput(
loss=loss,
logits=reshaped_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
ConvBERT Model with a token classification head on top (a linear layer on top of the hidden-states output) e.g. for
Named-Entity-Recognition (NER) tasks.
""",
CONVBERT_START_DOCSTRING,
)
class ConvBertForTokenClassification(ConvBertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.convbert = ConvBertModel(config)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, config.num_labels)
self.init_weights()
@add_start_docstrings_to_model_forward(CONVBERT_INPUTS_DOCSTRING.format("(batch_size, sequence_length)"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TokenClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
labels=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
r"""
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Labels for computing the token classification loss. Indices should be in ``[0, ..., config.num_labels -
1]``.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.convbert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
sequence_output = self.dropout(sequence_output)
logits = self.classifier(sequence_output)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
# Only keep active parts of the loss
if attention_mask is not None:
active_loss = attention_mask.view(-1) == 1
active_logits = logits.view(-1, self.num_labels)
active_labels = torch.where(
active_loss, labels.view(-1), torch.tensor(loss_fct.ignore_index).type_as(labels)
)
loss = loss_fct(active_logits, active_labels)
else:
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
if not return_dict:
output = (logits,) + outputs[1:]
return ((loss,) + output) if loss is not None else output
return TokenClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
ConvBERT Model with a span classification head on top for extractive question-answering tasks like SQuAD (a linear
layers on top of the hidden-states output to compute `span start logits` and `span end logits`).
""",
CONVBERT_START_DOCSTRING,
)
class ConvBertForQuestionAnswering(ConvBertPreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.convbert = ConvBertModel(config)
self.qa_outputs = nn.Linear(config.hidden_size, config.num_labels)
self.init_weights()
@add_start_docstrings_to_model_forward(CONVBERT_INPUTS_DOCSTRING.format("(batch_size, sequence_length)"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=QuestionAnsweringModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
start_positions=None,
end_positions=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
r"""
start_positions (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for position (index) of the start of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (:obj:`sequence_length`). Position outside of the
sequence are not taken into account for computing the loss.
end_positions (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for position (index) of the end of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (:obj:`sequence_length`). Position outside of the
sequence are not taken into account for computing the loss.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.convbert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
logits = self.qa_outputs(sequence_output)
start_logits, end_logits = logits.split(1, dim=-1)
start_logits = start_logits.squeeze(-1)
end_logits = end_logits.squeeze(-1)
total_loss = None
if start_positions is not None and end_positions is not None:
# If we are on multi-GPU, split add a dimension
if len(start_positions.size()) > 1:
start_positions = start_positions.squeeze(-1)
if len(end_positions.size()) > 1:
end_positions = end_positions.squeeze(-1)
# sometimes the start/end positions are outside our model inputs, we ignore these terms
ignored_index = start_logits.size(1)
start_positions.clamp_(0, ignored_index)
end_positions.clamp_(0, ignored_index)
loss_fct = CrossEntropyLoss(ignore_index=ignored_index)
start_loss = loss_fct(start_logits, start_positions)
end_loss = loss_fct(end_logits, end_positions)
total_loss = (start_loss + end_loss) / 2
if not return_dict:
output = (start_logits, end_logits) + outputs[1:]
return ((total_loss,) + output) if total_loss is not None else output
return QuestionAnsweringModelOutput(
loss=total_loss,
start_logits=start_logits,
end_logits=end_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
|
AdaMix/src/transformers/models/convbert/modeling_convbert.py/0
|
{
"file_path": "AdaMix/src/transformers/models/convbert/modeling_convbert.py",
"repo_id": "AdaMix",
"token_count": 23815
}
| 51 |
# coding=utf-8
# Copyright 2019 The Google AI Language Team Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" TF Electra model. """
import math
import warnings
from dataclasses import dataclass
from typing import Dict, Optional, Tuple, Union
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...file_utils import (
MULTIPLE_CHOICE_DUMMY_INPUTS,
ModelOutput,
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
replace_return_docstrings,
)
from ...modeling_tf_outputs import (
TFBaseModelOutput,
TFMaskedLMOutput,
TFMultipleChoiceModelOutput,
TFQuestionAnsweringModelOutput,
TFSequenceClassifierOutput,
TFTokenClassifierOutput,
)
from ...modeling_tf_utils import (
TFMaskedLanguageModelingLoss,
TFMultipleChoiceLoss,
TFPreTrainedModel,
TFQuestionAnsweringLoss,
TFSequenceClassificationLoss,
TFSequenceSummary,
TFTokenClassificationLoss,
get_initializer,
input_processing,
keras_serializable,
shape_list,
)
from ...utils import logging
from .configuration_electra import ElectraConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "google/electra-small-discriminator"
_CONFIG_FOR_DOC = "ElectraConfig"
_TOKENIZER_FOR_DOC = "ElectraTokenizer"
TF_ELECTRA_PRETRAINED_MODEL_ARCHIVE_LIST = [
"google/electra-small-generator",
"google/electra-base-generator",
"google/electra-large-generator",
"google/electra-small-discriminator",
"google/electra-base-discriminator",
"google/electra-large-discriminator",
# See all ELECTRA models at https://huggingface.co/models?filter=electra
]
# Copied from transformers.models.bert.modeling_tf_bert.TFBertSelfAttention with Bert->Electra
class TFElectraSelfAttention(tf.keras.layers.Layer):
def __init__(self, config: ElectraConfig, **kwargs):
super().__init__(**kwargs)
if config.hidden_size % config.num_attention_heads != 0:
raise ValueError(
f"The hidden size ({config.hidden_size}) is not a multiple of the number "
f"of attention heads ({config.num_attention_heads})"
)
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.sqrt_att_head_size = math.sqrt(self.attention_head_size)
self.query = tf.keras.layers.Dense(
units=self.all_head_size, kernel_initializer=get_initializer(config.initializer_range), name="query"
)
self.key = tf.keras.layers.Dense(
units=self.all_head_size, kernel_initializer=get_initializer(config.initializer_range), name="key"
)
self.value = tf.keras.layers.Dense(
units=self.all_head_size, kernel_initializer=get_initializer(config.initializer_range), name="value"
)
self.dropout = tf.keras.layers.Dropout(rate=config.attention_probs_dropout_prob)
def transpose_for_scores(self, tensor: tf.Tensor, batch_size: int) -> tf.Tensor:
# Reshape from [batch_size, seq_length, all_head_size] to [batch_size, seq_length, num_attention_heads, attention_head_size]
tensor = tf.reshape(tensor=tensor, shape=(batch_size, -1, self.num_attention_heads, self.attention_head_size))
# Transpose the tensor from [batch_size, seq_length, num_attention_heads, attention_head_size] to [batch_size, num_attention_heads, seq_length, attention_head_size]
return tf.transpose(tensor, perm=[0, 2, 1, 3])
def call(
self,
hidden_states: tf.Tensor,
attention_mask: tf.Tensor,
head_mask: tf.Tensor,
output_attentions: bool,
training: bool = False,
) -> Tuple[tf.Tensor]:
batch_size = shape_list(hidden_states)[0]
mixed_query_layer = self.query(inputs=hidden_states)
mixed_key_layer = self.key(inputs=hidden_states)
mixed_value_layer = self.value(inputs=hidden_states)
query_layer = self.transpose_for_scores(mixed_query_layer, batch_size)
key_layer = self.transpose_for_scores(mixed_key_layer, batch_size)
value_layer = self.transpose_for_scores(mixed_value_layer, batch_size)
# Take the dot product between "query" and "key" to get the raw attention scores.
# (batch size, num_heads, seq_len_q, seq_len_k)
attention_scores = tf.matmul(query_layer, key_layer, transpose_b=True)
dk = tf.cast(self.sqrt_att_head_size, dtype=attention_scores.dtype)
attention_scores = tf.divide(attention_scores, dk)
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in TFElectraModel call() function)
attention_scores = tf.add(attention_scores, attention_mask)
# Normalize the attention scores to probabilities.
attention_probs = tf.nn.softmax(logits=attention_scores, axis=-1)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(inputs=attention_probs, training=training)
# Mask heads if we want to
if head_mask is not None:
attention_probs = tf.multiply(attention_probs, head_mask)
attention_output = tf.matmul(attention_probs, value_layer)
attention_output = tf.transpose(attention_output, perm=[0, 2, 1, 3])
# (batch_size, seq_len_q, all_head_size)
attention_output = tf.reshape(tensor=attention_output, shape=(batch_size, -1, self.all_head_size))
outputs = (attention_output, attention_probs) if output_attentions else (attention_output,)
return outputs
# Copied from transformers.models.bert.modeling_tf_bert.TFBertSelfOutput with Bert->Electra
class TFElectraSelfOutput(tf.keras.layers.Layer):
def __init__(self, config: ElectraConfig, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(
units=config.hidden_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
self.LayerNorm = tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="LayerNorm")
self.dropout = tf.keras.layers.Dropout(rate=config.hidden_dropout_prob)
def call(self, hidden_states: tf.Tensor, input_tensor: tf.Tensor, training: bool = False) -> tf.Tensor:
hidden_states = self.dense(inputs=hidden_states)
hidden_states = self.dropout(inputs=hidden_states, training=training)
hidden_states = self.LayerNorm(inputs=hidden_states + input_tensor)
return hidden_states
# Copied from from transformers.models.bert.modeling_tf_bert.TFBertAttention with Bert->Electra
class TFElectraAttention(tf.keras.layers.Layer):
def __init__(self, config: ElectraConfig, **kwargs):
super().__init__(**kwargs)
self.self_attention = TFElectraSelfAttention(config, name="self")
self.dense_output = TFElectraSelfOutput(config, name="output")
def prune_heads(self, heads):
raise NotImplementedError
def call(
self,
input_tensor: tf.Tensor,
attention_mask: tf.Tensor,
head_mask: tf.Tensor,
output_attentions: bool,
training: bool = False,
) -> Tuple[tf.Tensor]:
self_outputs = self.self_attention(
hidden_states=input_tensor,
attention_mask=attention_mask,
head_mask=head_mask,
output_attentions=output_attentions,
training=training,
)
attention_output = self.dense_output(
hidden_states=self_outputs[0], input_tensor=input_tensor, training=training
)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
# Copied from transformers.models.bert.modeling_tf_bert.TFBertIntermediate with Bert->Electra
class TFElectraIntermediate(tf.keras.layers.Layer):
def __init__(self, config: ElectraConfig, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(
units=config.intermediate_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = get_tf_activation(config.hidden_act)
else:
self.intermediate_act_fn = config.hidden_act
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
hidden_states = self.dense(inputs=hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
# Copied from transformers.models.bert.modeling_tf_bert.TFBertOutput with Bert->Electra
class TFElectraOutput(tf.keras.layers.Layer):
def __init__(self, config: ElectraConfig, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(
units=config.hidden_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
self.LayerNorm = tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="LayerNorm")
self.dropout = tf.keras.layers.Dropout(rate=config.hidden_dropout_prob)
def call(self, hidden_states: tf.Tensor, input_tensor: tf.Tensor, training: bool = False) -> tf.Tensor:
hidden_states = self.dense(inputs=hidden_states)
hidden_states = self.dropout(inputs=hidden_states, training=training)
hidden_states = self.LayerNorm(inputs=hidden_states + input_tensor)
return hidden_states
# Copied from transformers.models.bert.modeling_tf_bert.TFBertLayer with Bert->Electra
class TFElectraLayer(tf.keras.layers.Layer):
def __init__(self, config: ElectraConfig, **kwargs):
super().__init__(**kwargs)
self.attention = TFElectraAttention(config, name="attention")
self.intermediate = TFElectraIntermediate(config, name="intermediate")
self.bert_output = TFElectraOutput(config, name="output")
def call(
self,
hidden_states: tf.Tensor,
attention_mask: tf.Tensor,
head_mask: tf.Tensor,
output_attentions: bool,
training: bool = False,
) -> Tuple[tf.Tensor]:
attention_outputs = self.attention(
input_tensor=hidden_states,
attention_mask=attention_mask,
head_mask=head_mask,
output_attentions=output_attentions,
training=training,
)
attention_output = attention_outputs[0]
intermediate_output = self.intermediate(hidden_states=attention_output)
layer_output = self.bert_output(
hidden_states=intermediate_output, input_tensor=attention_output, training=training
)
outputs = (layer_output,) + attention_outputs[1:] # add attentions if we output them
return outputs
# Copied from transformers.models.bert.modeling_tf_bert.TFBertEncoder with Bert->Electra
class TFElectraEncoder(tf.keras.layers.Layer):
def __init__(self, config: ElectraConfig, **kwargs):
super().__init__(**kwargs)
self.layer = [TFElectraLayer(config, name="layer_._{}".format(i)) for i in range(config.num_hidden_layers)]
def call(
self,
hidden_states: tf.Tensor,
attention_mask: tf.Tensor,
head_mask: tf.Tensor,
output_attentions: bool,
output_hidden_states: bool,
return_dict: bool,
training: bool = False,
) -> Union[TFBaseModelOutput, Tuple[tf.Tensor]]:
all_hidden_states = () if output_hidden_states else None
all_attentions = () if output_attentions else None
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_outputs = layer_module(
hidden_states=hidden_states,
attention_mask=attention_mask,
head_mask=head_mask[i],
output_attentions=output_attentions,
training=training,
)
hidden_states = layer_outputs[0]
if output_attentions:
all_attentions = all_attentions + (layer_outputs[1],)
# Add last layer
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, all_hidden_states, all_attentions] if v is not None)
return TFBaseModelOutput(
last_hidden_state=hidden_states, hidden_states=all_hidden_states, attentions=all_attentions
)
# Copied from transformers.models.bert.modeling_tf_bert.TFBertPooler with Bert->Electra
class TFElectraPooler(tf.keras.layers.Layer):
def __init__(self, config: ElectraConfig, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(
units=config.hidden_size,
kernel_initializer=get_initializer(config.initializer_range),
activation="tanh",
name="dense",
)
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(inputs=first_token_tensor)
return pooled_output
# Copied from transformers.models.albert.modeling_tf_albert.TFAlbertEmbeddings with Albert->Electra
class TFElectraEmbeddings(tf.keras.layers.Layer):
"""Construct the embeddings from word, position and token_type embeddings."""
def __init__(self, config: ElectraConfig, **kwargs):
super().__init__(**kwargs)
self.vocab_size = config.vocab_size
self.type_vocab_size = config.type_vocab_size
self.embedding_size = config.embedding_size
self.max_position_embeddings = config.max_position_embeddings
self.initializer_range = config.initializer_range
self.embeddings_sum = tf.keras.layers.Add()
self.LayerNorm = tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="LayerNorm")
self.dropout = tf.keras.layers.Dropout(rate=config.hidden_dropout_prob)
def build(self, input_shape: tf.TensorShape):
with tf.name_scope("word_embeddings"):
self.weight = self.add_weight(
name="weight",
shape=[self.vocab_size, self.embedding_size],
initializer=get_initializer(self.initializer_range),
)
with tf.name_scope("token_type_embeddings"):
self.token_type_embeddings = self.add_weight(
name="embeddings",
shape=[self.type_vocab_size, self.embedding_size],
initializer=get_initializer(self.initializer_range),
)
with tf.name_scope("position_embeddings"):
self.position_embeddings = self.add_weight(
name="embeddings",
shape=[self.max_position_embeddings, self.embedding_size],
initializer=get_initializer(self.initializer_range),
)
super().build(input_shape)
# Copied from transformers.models.bert.modeling_tf_bert.TFBertEmbeddings.call
def call(
self,
input_ids: tf.Tensor = None,
position_ids: tf.Tensor = None,
token_type_ids: tf.Tensor = None,
inputs_embeds: tf.Tensor = None,
training: bool = False,
) -> tf.Tensor:
"""
Applies embedding based on inputs tensor.
Returns:
final_embeddings (:obj:`tf.Tensor`): output embedding tensor.
"""
assert not (input_ids is None and inputs_embeds is None)
if input_ids is not None:
inputs_embeds = tf.gather(params=self.weight, indices=input_ids)
input_shape = shape_list(inputs_embeds)[:-1]
if token_type_ids is None:
token_type_ids = tf.fill(dims=input_shape, value=0)
if position_ids is None:
position_ids = tf.expand_dims(tf.range(start=0, limit=input_shape[-1]), axis=0)
position_embeds = tf.gather(params=self.position_embeddings, indices=position_ids)
position_embeds = tf.tile(input=position_embeds, multiples=(input_shape[0], 1, 1))
token_type_embeds = tf.gather(params=self.token_type_embeddings, indices=token_type_ids)
final_embeddings = self.embeddings_sum(inputs=[inputs_embeds, position_embeds, token_type_embeds])
final_embeddings = self.LayerNorm(inputs=final_embeddings)
final_embeddings = self.dropout(inputs=final_embeddings, training=training)
return final_embeddings
class TFElectraDiscriminatorPredictions(tf.keras.layers.Layer):
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(config.hidden_size, name="dense")
self.dense_prediction = tf.keras.layers.Dense(1, name="dense_prediction")
self.config = config
def call(self, discriminator_hidden_states, training=False):
hidden_states = self.dense(discriminator_hidden_states)
hidden_states = get_tf_activation(self.config.hidden_act)(hidden_states)
logits = tf.squeeze(self.dense_prediction(hidden_states), -1)
return logits
class TFElectraGeneratorPredictions(tf.keras.layers.Layer):
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.LayerNorm = tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="LayerNorm")
self.dense = tf.keras.layers.Dense(config.embedding_size, name="dense")
def call(self, generator_hidden_states, training=False):
hidden_states = self.dense(generator_hidden_states)
hidden_states = get_tf_activation("gelu")(hidden_states)
hidden_states = self.LayerNorm(hidden_states)
return hidden_states
class TFElectraPreTrainedModel(TFPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = ElectraConfig
base_model_prefix = "electra"
# When the model is loaded from a PT model
_keys_to_ignore_on_load_unexpected = [r"generator_lm_head.weight"]
_keys_to_ignore_on_load_missing = [r"dropout"]
@keras_serializable
class TFElectraMainLayer(tf.keras.layers.Layer):
config_class = ElectraConfig
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.config = config
self.embeddings = TFElectraEmbeddings(config, name="embeddings")
if config.embedding_size != config.hidden_size:
self.embeddings_project = tf.keras.layers.Dense(config.hidden_size, name="embeddings_project")
self.encoder = TFElectraEncoder(config, name="encoder")
self.config = config
def get_input_embeddings(self):
return self.embeddings
def set_input_embeddings(self, value):
self.embeddings.weight = value
self.embeddings.vocab_size = shape_list(value)[0]
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
raise NotImplementedError
def get_extended_attention_mask(self, attention_mask, input_shape, dtype):
if attention_mask is None:
attention_mask = tf.fill(input_shape, 1)
# We create a 3D attention mask from a 2D tensor mask.
# Sizes are [batch_size, 1, 1, to_seq_length]
# So we can broadcast to [batch_size, num_heads, from_seq_length, to_seq_length]
# this attention mask is more simple than the triangular masking of causal attention
# used in OpenAI GPT, we just need to prepare the broadcast dimension here.
extended_attention_mask = tf.reshape(attention_mask, (input_shape[0], 1, 1, input_shape[1]))
# Since attention_mask is 1.0 for positions we want to attend and 0.0 for
# masked positions, this operation will create a tensor which is 0.0 for
# positions we want to attend and -10000.0 for masked positions.
# Since we are adding it to the raw scores before the softmax, this is
# effectively the same as removing these entirely.
extended_attention_mask = tf.cast(extended_attention_mask, dtype)
extended_attention_mask = (1.0 - extended_attention_mask) * -10000.0
return extended_attention_mask
def get_head_mask(self, head_mask):
if head_mask is not None:
raise NotImplementedError
else:
head_mask = [None] * self.config.num_hidden_layers
return head_mask
def call(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
training=False,
**kwargs,
):
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
kwargs_call=kwargs,
)
if inputs["input_ids"] is not None and inputs["inputs_embeds"] is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif inputs["input_ids"] is not None:
input_shape = shape_list(inputs["input_ids"])
elif inputs["inputs_embeds"] is not None:
input_shape = shape_list(inputs["inputs_embeds"])[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
if inputs["attention_mask"] is None:
inputs["attention_mask"] = tf.fill(input_shape, 1)
if inputs["token_type_ids"] is None:
inputs["token_type_ids"] = tf.fill(input_shape, 0)
hidden_states = self.embeddings(
inputs["input_ids"],
inputs["position_ids"],
inputs["token_type_ids"],
inputs["inputs_embeds"],
training=inputs["training"],
)
extended_attention_mask = self.get_extended_attention_mask(
inputs["attention_mask"], input_shape, hidden_states.dtype
)
inputs["head_mask"] = self.get_head_mask(inputs["head_mask"])
if hasattr(self, "embeddings_project"):
hidden_states = self.embeddings_project(hidden_states, training=inputs["training"])
hidden_states = self.encoder(
hidden_states,
extended_attention_mask,
inputs["head_mask"],
inputs["output_attentions"],
inputs["output_hidden_states"],
inputs["return_dict"],
training=inputs["training"],
)
return hidden_states
@dataclass
class TFElectraForPreTrainingOutput(ModelOutput):
"""
Output type of :class:`~transformers.TFElectraForPreTraining`.
Args:
loss (`optional`, returned when ``labels`` is provided, ``tf.Tensor`` of shape :obj:`(1,)`):
Total loss of the ELECTRA objective.
logits (:obj:`tf.Tensor` of shape :obj:`(batch_size, sequence_length)`):
Prediction scores of the head (scores for each token before SoftMax).
hidden_states (:obj:`tuple(tf.Tensor)`, `optional`, returned when ``output_hidden_states=True`` is passed or when ``config.output_hidden_states=True``):
Tuple of :obj:`tf.Tensor` (one for the output of the embeddings + one for the output of each layer) of
shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(tf.Tensor)`, `optional`, returned when ``output_attentions=True`` is passed or when ``config.output_attentions=True``):
Tuple of :obj:`tf.Tensor` (one for each layer) of shape :obj:`(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
logits: tf.Tensor = None
hidden_states: Optional[Tuple[tf.Tensor]] = None
attentions: Optional[Tuple[tf.Tensor]] = None
ELECTRA_START_DOCSTRING = r"""
This model inherits from :class:`~transformers.TFPreTrainedModel`. Check the superclass documentation for the
generic methods the library implements for all its model (such as downloading or saving, resizing the input
embeddings, pruning heads etc.)
This model is also a `tf.keras.Model <https://www.tensorflow.org/api_docs/python/tf/keras/Model>`__ subclass. Use
it as a regular TF 2.0 Keras Model and refer to the TF 2.0 documentation for all matter related to general usage
and behavior.
.. note::
TF 2.0 models accepts two formats as inputs:
- having all inputs as keyword arguments (like PyTorch models), or
- having all inputs as a list, tuple or dict in the first positional arguments.
This second option is useful when using :meth:`tf.keras.Model.fit` method which currently requires having all
the tensors in the first argument of the model call function: :obj:`model(inputs)`.
If you choose this second option, there are three possibilities you can use to gather all the input Tensors in
the first positional argument :
- a single Tensor with :obj:`input_ids` only and nothing else: :obj:`model(inputs_ids)`
- a list of varying length with one or several input Tensors IN THE ORDER given in the docstring:
:obj:`model([input_ids, attention_mask])` or :obj:`model([input_ids, attention_mask, token_type_ids])`
- a dictionary with one or several input Tensors associated to the input names given in the docstring:
:obj:`model({"input_ids": input_ids, "token_type_ids": token_type_ids})`
Parameters:
config (:class:`~transformers.ElectraConfig`): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the :meth:`~transformers.PreTrainedModel.from_pretrained` method to load the model
weights.
"""
ELECTRA_INPUTS_DOCSTRING = r"""
Args:
input_ids (:obj:`Numpy array` or :obj:`tf.Tensor` of shape :obj:`({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using :class:`~transformers.ElectraTokenizer`. See
:func:`transformers.PreTrainedTokenizer.__call__` and :func:`transformers.PreTrainedTokenizer.encode` for
details.
`What are input IDs? <../glossary.html#input-ids>`__
attention_mask (:obj:`Numpy array` or :obj:`tf.Tensor` of shape :obj:`({0})`, `optional`):
Mask to avoid performing attention on padding token indices. Mask values selected in ``[0, 1]``:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
`What are attention masks? <../glossary.html#attention-mask>`__
position_ids (:obj:`Numpy array` or :obj:`tf.Tensor` of shape :obj:`({0})`, `optional`):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range ``[0,
config.max_position_embeddings - 1]``.
`What are position IDs? <../glossary.html#position-ids>`__
head_mask (:obj:`Numpy array` or :obj:`tf.Tensor` of shape :obj:`(num_heads,)` or :obj:`(num_layers, num_heads)`, `optional`):
Mask to nullify selected heads of the self-attention modules. Mask values selected in ``[0, 1]``:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (:obj:`tf.Tensor` of shape :obj:`({0}, hidden_size)`, `optional`):
Optionally, instead of passing :obj:`input_ids` you can choose to directly pass an embedded representation.
This is useful if you want more control over how to convert :obj:`input_ids` indices into associated
vectors than the model's internal embedding lookup matrix.
output_attentions (:obj:`bool`, `optional`):
Whether or not to return the attentions tensors of all attention layers. See ``attentions`` under returned
tensors for more detail. This argument can be used only in eager mode, in graph mode the value in the
config will be used instead.
output_hidden_states (:obj:`bool`, `optional`):
Whether or not to return the hidden states of all layers. See ``hidden_states`` under returned tensors for
more detail. This argument can be used only in eager mode, in graph mode the value in the config will be
used instead.
return_dict (:obj:`bool`, `optional`):
Whether or not to return a :class:`~transformers.file_utils.ModelOutput` instead of a plain tuple. This
argument can be used in eager mode, in graph mode the value will always be set to True.
training (:obj:`bool`, `optional`, defaults to :obj:`False`):
Whether or not to use the model in training mode (some modules like dropout modules have different
behaviors between training and evaluation).
"""
@add_start_docstrings(
"The bare Electra Model transformer outputting raw hidden-states without any specific head on top. Identical to "
"the BERT model except that it uses an additional linear layer between the embedding layer and the encoder if the "
"hidden size and embedding size are different."
""
"Both the generator and discriminator checkpoints may be loaded into this model.",
ELECTRA_START_DOCSTRING,
)
class TFElectraModel(TFElectraPreTrainedModel):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.electra = TFElectraMainLayer(config, name="electra")
@add_start_docstrings_to_model_forward(ELECTRA_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFBaseModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
training=False,
**kwargs,
):
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
kwargs_call=kwargs,
)
outputs = self.electra(
input_ids=inputs["input_ids"],
attention_mask=inputs["attention_mask"],
token_type_ids=inputs["token_type_ids"],
position_ids=inputs["position_ids"],
head_mask=inputs["head_mask"],
inputs_embeds=inputs["inputs_embeds"],
output_attentions=inputs["output_attentions"],
output_hidden_states=inputs["output_hidden_states"],
return_dict=inputs["return_dict"],
training=inputs["training"],
)
return outputs
# Copied from transformers.models.distilbert.modeling_tf_distilbert.TFDistilBertModel.serving_output
def serving_output(self, output):
hs = tf.convert_to_tensor(output.hidden_states) if self.config.output_hidden_states else None
attns = tf.convert_to_tensor(output.attentions) if self.config.output_attentions else None
return TFBaseModelOutput(last_hidden_state=output.last_hidden_state, hidden_states=hs, attentions=attns)
@add_start_docstrings(
"""
Electra model with a binary classification head on top as used during pretraining for identifying generated tokens.
Even though both the discriminator and generator may be loaded into this model, the discriminator is the only model
of the two to have the correct classification head to be used for this model.
""",
ELECTRA_START_DOCSTRING,
)
class TFElectraForPreTraining(TFElectraPreTrainedModel):
def __init__(self, config, **kwargs):
super().__init__(config, **kwargs)
self.electra = TFElectraMainLayer(config, name="electra")
self.discriminator_predictions = TFElectraDiscriminatorPredictions(config, name="discriminator_predictions")
@add_start_docstrings_to_model_forward(ELECTRA_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@replace_return_docstrings(output_type=TFElectraForPreTrainingOutput, config_class=_CONFIG_FOR_DOC)
def call(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
training=False,
**kwargs,
):
r"""
Returns:
Examples::
>>> import tensorflow as tf
>>> from transformers import ElectraTokenizer, TFElectraForPreTraining
>>> tokenizer = ElectraTokenizer.from_pretrained('google/electra-small-discriminator')
>>> model = TFElectraForPreTraining.from_pretrained('google/electra-small-discriminator')
>>> input_ids = tf.constant(tokenizer.encode("Hello, my dog is cute"))[None, :] # Batch size 1
>>> outputs = model(input_ids)
>>> scores = outputs[0]
"""
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
kwargs_call=kwargs,
)
discriminator_hidden_states = self.electra(
input_ids=inputs["input_ids"],
attention_mask=inputs["attention_mask"],
token_type_ids=inputs["token_type_ids"],
position_ids=inputs["position_ids"],
head_mask=inputs["head_mask"],
inputs_embeds=inputs["inputs_embeds"],
output_attentions=inputs["output_attentions"],
output_hidden_states=inputs["output_hidden_states"],
return_dict=inputs["return_dict"],
training=inputs["training"],
)
discriminator_sequence_output = discriminator_hidden_states[0]
logits = self.discriminator_predictions(discriminator_sequence_output)
if not inputs["return_dict"]:
return (logits,) + discriminator_hidden_states[1:]
return TFElectraForPreTrainingOutput(
logits=logits,
hidden_states=discriminator_hidden_states.hidden_states,
attentions=discriminator_hidden_states.attentions,
)
def serving_output(self, output):
hs = tf.convert_to_tensor(output.hidden_states) if self.config.output_hidden_states else None
attns = tf.convert_to_tensor(output.attentions) if self.config.output_attentions else None
return TFElectraForPreTrainingOutput(logits=output.logits, hidden_states=hs, attentions=attns)
class TFElectraMaskedLMHead(tf.keras.layers.Layer):
def __init__(self, config, input_embeddings, **kwargs):
super().__init__(**kwargs)
self.vocab_size = config.vocab_size
self.embedding_size = config.embedding_size
self.input_embeddings = input_embeddings
def build(self, input_shape):
self.bias = self.add_weight(shape=(self.vocab_size,), initializer="zeros", trainable=True, name="bias")
super().build(input_shape)
def get_output_embeddings(self):
return self.input_embeddings
def set_output_embeddings(self, value):
self.input_embeddings.weight = value
self.input_embeddings.vocab_size = shape_list(value)[0]
def get_bias(self):
return {"bias": self.bias}
def set_bias(self, value):
self.bias = value["bias"]
self.vocab_size = shape_list(value["bias"])[0]
def call(self, hidden_states):
seq_length = shape_list(tensor=hidden_states)[1]
hidden_states = tf.reshape(tensor=hidden_states, shape=[-1, self.embedding_size])
hidden_states = tf.matmul(a=hidden_states, b=self.input_embeddings.weight, transpose_b=True)
hidden_states = tf.reshape(tensor=hidden_states, shape=[-1, seq_length, self.vocab_size])
hidden_states = tf.nn.bias_add(value=hidden_states, bias=self.bias)
return hidden_states
@add_start_docstrings(
"""
Electra model with a language modeling head on top.
Even though both the discriminator and generator may be loaded into this model, the generator is the only model of
the two to have been trained for the masked language modeling task.
""",
ELECTRA_START_DOCSTRING,
)
class TFElectraForMaskedLM(TFElectraPreTrainedModel, TFMaskedLanguageModelingLoss):
def __init__(self, config, **kwargs):
super().__init__(config, **kwargs)
self.vocab_size = config.vocab_size
self.electra = TFElectraMainLayer(config, name="electra")
self.generator_predictions = TFElectraGeneratorPredictions(config, name="generator_predictions")
if isinstance(config.hidden_act, str):
self.activation = get_tf_activation(config.hidden_act)
else:
self.activation = config.hidden_act
self.generator_lm_head = TFElectraMaskedLMHead(config, self.electra.embeddings, name="generator_lm_head")
def get_lm_head(self):
return self.generator_lm_head
def get_prefix_bias_name(self):
warnings.warn("The method get_prefix_bias_name is deprecated. Please use `get_bias` instead.", FutureWarning)
return self.name + "/" + self.generator_lm_head.name
@add_start_docstrings_to_model_forward(ELECTRA_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFMaskedLMOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
labels=None,
training=False,
**kwargs,
):
r"""
labels (:obj:`tf.Tensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Labels for computing the masked language modeling loss. Indices should be in ``[-100, 0, ...,
config.vocab_size]`` (see ``input_ids`` docstring) Tokens with indices set to ``-100`` are ignored
(masked), the loss is only computed for the tokens with labels in ``[0, ..., config.vocab_size]``
"""
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
labels=labels,
training=training,
kwargs_call=kwargs,
)
generator_hidden_states = self.electra(
input_ids=inputs["input_ids"],
attention_mask=inputs["attention_mask"],
token_type_ids=inputs["token_type_ids"],
position_ids=inputs["position_ids"],
head_mask=inputs["head_mask"],
inputs_embeds=inputs["inputs_embeds"],
output_attentions=inputs["output_attentions"],
output_hidden_states=inputs["output_hidden_states"],
return_dict=inputs["return_dict"],
training=inputs["training"],
)
generator_sequence_output = generator_hidden_states[0]
prediction_scores = self.generator_predictions(generator_sequence_output, training=inputs["training"])
prediction_scores = self.generator_lm_head(prediction_scores, training=inputs["training"])
loss = None if inputs["labels"] is None else self.compute_loss(inputs["labels"], prediction_scores)
if not inputs["return_dict"]:
output = (prediction_scores,) + generator_hidden_states[1:]
return ((loss,) + output) if loss is not None else output
return TFMaskedLMOutput(
loss=loss,
logits=prediction_scores,
hidden_states=generator_hidden_states.hidden_states,
attentions=generator_hidden_states.attentions,
)
# Copied from transformers.models.bert.modeling_tf_bert.TFBertForMaskedLM.serving_output
def serving_output(self, output: TFMaskedLMOutput) -> TFMaskedLMOutput:
hs = tf.convert_to_tensor(output.hidden_states) if self.config.output_hidden_states else None
attns = tf.convert_to_tensor(output.attentions) if self.config.output_attentions else None
return TFMaskedLMOutput(logits=output.logits, hidden_states=hs, attentions=attns)
class TFElectraClassificationHead(tf.keras.layers.Layer):
"""Head for sentence-level classification tasks."""
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(
config.hidden_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
self.dropout = tf.keras.layers.Dropout(config.hidden_dropout_prob)
self.out_proj = tf.keras.layers.Dense(
config.num_labels, kernel_initializer=get_initializer(config.initializer_range), name="out_proj"
)
def call(self, inputs, **kwargs):
x = inputs[:, 0, :] # take <s> token (equiv. to [CLS])
x = self.dropout(x)
x = self.dense(x)
x = get_tf_activation("gelu")(x) # although BERT uses tanh here, it seems Electra authors used gelu here
x = self.dropout(x)
x = self.out_proj(x)
return x
@add_start_docstrings(
"""
ELECTRA Model transformer with a sequence classification/regression head on top (a linear layer on top of the
pooled output) e.g. for GLUE tasks.
""",
ELECTRA_START_DOCSTRING,
)
class TFElectraForSequenceClassification(TFElectraPreTrainedModel, TFSequenceClassificationLoss):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.num_labels = config.num_labels
self.electra = TFElectraMainLayer(config, name="electra")
self.classifier = TFElectraClassificationHead(config, name="classifier")
@add_start_docstrings_to_model_forward(ELECTRA_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFSequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
labels=None,
training=False,
**kwargs,
):
r"""
labels (:obj:`tf.Tensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for computing the sequence classification/regression loss. Indices should be in :obj:`[0, ...,
config.num_labels - 1]`. If :obj:`config.num_labels == 1` a regression loss is computed (Mean-Square loss),
If :obj:`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
labels=labels,
training=training,
kwargs_call=kwargs,
)
outputs = self.electra(
input_ids=inputs["input_ids"],
attention_mask=inputs["attention_mask"],
token_type_ids=inputs["token_type_ids"],
position_ids=inputs["position_ids"],
head_mask=inputs["head_mask"],
inputs_embeds=inputs["inputs_embeds"],
output_attentions=inputs["output_attentions"],
output_hidden_states=inputs["output_hidden_states"],
return_dict=inputs["return_dict"],
training=inputs["training"],
)
logits = self.classifier(outputs[0])
loss = None if inputs["labels"] is None else self.compute_loss(inputs["labels"], logits)
if not inputs["return_dict"]:
output = (logits,) + outputs[1:]
return ((loss,) + output) if loss is not None else output
return TFSequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
# Copied from transformers.models.bert.modeling_tf_bert.TFBertForSequenceClassification.serving_output
def serving_output(self, output: TFSequenceClassifierOutput) -> TFSequenceClassifierOutput:
hs = tf.convert_to_tensor(output.hidden_states) if self.config.output_hidden_states else None
attns = tf.convert_to_tensor(output.attentions) if self.config.output_attentions else None
return TFSequenceClassifierOutput(logits=output.logits, hidden_states=hs, attentions=attns)
@add_start_docstrings(
"""
ELECTRA Model with a multiple choice classification head on top (a linear layer on top of the pooled output and a
softmax) e.g. for RocStories/SWAG tasks.
""",
ELECTRA_START_DOCSTRING,
)
class TFElectraForMultipleChoice(TFElectraPreTrainedModel, TFMultipleChoiceLoss):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.electra = TFElectraMainLayer(config, name="electra")
self.sequence_summary = TFSequenceSummary(
config, initializer_range=config.initializer_range, name="sequence_summary"
)
self.classifier = tf.keras.layers.Dense(
1, kernel_initializer=get_initializer(config.initializer_range), name="classifier"
)
@property
def dummy_inputs(self):
"""
Dummy inputs to build the network.
Returns:
tf.Tensor with dummy inputs
"""
return {"input_ids": tf.constant(MULTIPLE_CHOICE_DUMMY_INPUTS)}
@add_start_docstrings_to_model_forward(ELECTRA_INPUTS_DOCSTRING.format("batch_size, num_choices, sequence_length"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFMultipleChoiceModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
labels=None,
training=False,
**kwargs,
):
r"""
labels (:obj:`tf.Tensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for computing the multiple choice classification loss. Indices should be in ``[0, ...,
num_choices]`` where :obj:`num_choices` is the size of the second dimension of the input tensors. (See
:obj:`input_ids` above)
"""
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
labels=labels,
training=training,
kwargs_call=kwargs,
)
if inputs["input_ids"] is not None:
num_choices = shape_list(inputs["input_ids"])[1]
seq_length = shape_list(inputs["input_ids"])[2]
else:
num_choices = shape_list(inputs["inputs_embeds"])[1]
seq_length = shape_list(inputs["inputs_embeds"])[2]
flat_input_ids = tf.reshape(inputs["input_ids"], (-1, seq_length)) if inputs["input_ids"] is not None else None
flat_attention_mask = (
tf.reshape(inputs["attention_mask"], (-1, seq_length)) if inputs["attention_mask"] is not None else None
)
flat_token_type_ids = (
tf.reshape(inputs["token_type_ids"], (-1, seq_length)) if inputs["token_type_ids"] is not None else None
)
flat_position_ids = (
tf.reshape(inputs["position_ids"], (-1, seq_length)) if inputs["position_ids"] is not None else None
)
flat_inputs_embeds = (
tf.reshape(inputs["inputs_embeds"], (-1, seq_length, shape_list(inputs["inputs_embeds"])[3]))
if inputs["inputs_embeds"] is not None
else None
)
outputs = self.electra(
flat_input_ids,
flat_attention_mask,
flat_token_type_ids,
flat_position_ids,
inputs["head_mask"],
flat_inputs_embeds,
inputs["output_attentions"],
inputs["output_hidden_states"],
return_dict=inputs["return_dict"],
training=inputs["training"],
)
logits = self.sequence_summary(outputs[0])
logits = self.classifier(logits)
reshaped_logits = tf.reshape(logits, (-1, num_choices))
loss = None if inputs["labels"] is None else self.compute_loss(inputs["labels"], reshaped_logits)
if not inputs["return_dict"]:
output = (reshaped_logits,) + outputs[1:]
return ((loss,) + output) if loss is not None else output
return TFMultipleChoiceModelOutput(
loss=loss,
logits=reshaped_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@tf.function(
input_signature=[
{
"input_ids": tf.TensorSpec((None, None, None), tf.int32, name="input_ids"),
"attention_mask": tf.TensorSpec((None, None, None), tf.int32, name="attention_mask"),
"token_type_ids": tf.TensorSpec((None, None, None), tf.int32, name="token_type_ids"),
}
]
)
# Copied from transformers.models.bert.modeling_tf_bert.TFBertForMultipleChoice.serving
def serving(self, inputs: Dict[str, tf.Tensor]):
output = self.call(input_ids=inputs)
return self.serving_output(output)
# Copied from transformers.models.bert.modeling_tf_bert.TFBertForMultipleChoice.serving_output
def serving_output(self, output: TFMultipleChoiceModelOutput) -> TFMultipleChoiceModelOutput:
hs = tf.convert_to_tensor(output.hidden_states) if self.config.output_hidden_states else None
attns = tf.convert_to_tensor(output.attentions) if self.config.output_attentions else None
return TFMultipleChoiceModelOutput(logits=output.logits, hidden_states=hs, attentions=attns)
@add_start_docstrings(
"""
Electra model with a token classification head on top.
Both the discriminator and generator may be loaded into this model.
""",
ELECTRA_START_DOCSTRING,
)
class TFElectraForTokenClassification(TFElectraPreTrainedModel, TFTokenClassificationLoss):
def __init__(self, config, **kwargs):
super().__init__(config, **kwargs)
self.electra = TFElectraMainLayer(config, name="electra")
self.dropout = tf.keras.layers.Dropout(config.hidden_dropout_prob)
self.classifier = tf.keras.layers.Dense(
config.num_labels, kernel_initializer=get_initializer(config.initializer_range), name="classifier"
)
@add_start_docstrings_to_model_forward(ELECTRA_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFTokenClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
labels=None,
training=False,
**kwargs,
):
r"""
labels (:obj:`tf.Tensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Labels for computing the token classification loss. Indices should be in ``[0, ..., config.num_labels -
1]``.
"""
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
labels=labels,
training=training,
kwargs_call=kwargs,
)
discriminator_hidden_states = self.electra(
input_ids=inputs["input_ids"],
attention_mask=inputs["attention_mask"],
token_type_ids=inputs["token_type_ids"],
position_ids=inputs["position_ids"],
head_mask=inputs["head_mask"],
inputs_embeds=inputs["inputs_embeds"],
output_attentions=inputs["output_attentions"],
output_hidden_states=inputs["output_hidden_states"],
return_dict=inputs["return_dict"],
training=inputs["training"],
)
discriminator_sequence_output = discriminator_hidden_states[0]
discriminator_sequence_output = self.dropout(discriminator_sequence_output)
logits = self.classifier(discriminator_sequence_output)
loss = None if inputs["labels"] is None else self.compute_loss(inputs["labels"], logits)
if not inputs["return_dict"]:
output = (logits,) + discriminator_hidden_states[1:]
return ((loss,) + output) if loss is not None else output
return TFTokenClassifierOutput(
loss=loss,
logits=logits,
hidden_states=discriminator_hidden_states.hidden_states,
attentions=discriminator_hidden_states.attentions,
)
# Copied from transformers.models.bert.modeling_tf_bert.TFBertForTokenClassification.serving_output
def serving_output(self, output: TFTokenClassifierOutput) -> TFTokenClassifierOutput:
hs = tf.convert_to_tensor(output.hidden_states) if self.config.output_hidden_states else None
attns = tf.convert_to_tensor(output.attentions) if self.config.output_attentions else None
return TFTokenClassifierOutput(logits=output.logits, hidden_states=hs, attentions=attns)
@add_start_docstrings(
"""
Electra Model with a span classification head on top for extractive question-answering tasks like SQuAD (a linear
layers on top of the hidden-states output to compute `span start logits` and `span end logits`).
""",
ELECTRA_START_DOCSTRING,
)
class TFElectraForQuestionAnswering(TFElectraPreTrainedModel, TFQuestionAnsweringLoss):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.num_labels = config.num_labels
self.electra = TFElectraMainLayer(config, name="electra")
self.qa_outputs = tf.keras.layers.Dense(
config.num_labels, kernel_initializer=get_initializer(config.initializer_range), name="qa_outputs"
)
@add_start_docstrings_to_model_forward(ELECTRA_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFQuestionAnsweringModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
start_positions=None,
end_positions=None,
training=False,
**kwargs,
):
r"""
start_positions (:obj:`tf.Tensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for position (index) of the start of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (:obj:`sequence_length`). Position outside of the
sequence are not taken into account for computing the loss.
end_positions (:obj:`tf.Tensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for position (index) of the end of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (:obj:`sequence_length`). Position outside of the
sequence are not taken into account for computing the loss.
"""
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
start_positions=start_positions,
end_positions=end_positions,
training=training,
kwargs_call=kwargs,
)
discriminator_hidden_states = self.electra(
input_ids=inputs["input_ids"],
attention_mask=inputs["attention_mask"],
token_type_ids=inputs["token_type_ids"],
position_ids=inputs["position_ids"],
head_mask=inputs["head_mask"],
inputs_embeds=inputs["inputs_embeds"],
output_attentions=inputs["output_attentions"],
output_hidden_states=inputs["output_hidden_states"],
return_dict=inputs["return_dict"],
training=inputs["training"],
)
discriminator_sequence_output = discriminator_hidden_states[0]
logits = self.qa_outputs(discriminator_sequence_output)
start_logits, end_logits = tf.split(logits, 2, axis=-1)
start_logits = tf.squeeze(start_logits, axis=-1)
end_logits = tf.squeeze(end_logits, axis=-1)
loss = None
if inputs["start_positions"] is not None and inputs["end_positions"] is not None:
labels = {"start_position": inputs["start_positions"]}
labels["end_position"] = inputs["end_positions"]
loss = self.compute_loss(labels, (start_logits, end_logits))
if not inputs["return_dict"]:
output = (
start_logits,
end_logits,
) + discriminator_hidden_states[1:]
return ((loss,) + output) if loss is not None else output
return TFQuestionAnsweringModelOutput(
loss=loss,
start_logits=start_logits,
end_logits=end_logits,
hidden_states=discriminator_hidden_states.hidden_states,
attentions=discriminator_hidden_states.attentions,
)
# Copied from transformers.models.bert.modeling_tf_bert.TFBertForQuestionAnswering.serving_output
def serving_output(self, output: TFQuestionAnsweringModelOutput) -> TFQuestionAnsweringModelOutput:
hs = tf.convert_to_tensor(output.hidden_states) if self.config.output_hidden_states else None
attns = tf.convert_to_tensor(output.attentions) if self.config.output_attentions else None
return TFQuestionAnsweringModelOutput(
start_logits=output.start_logits, end_logits=output.end_logits, hidden_states=hs, attentions=attns
)
|
AdaMix/src/transformers/models/electra/modeling_tf_electra.py/0
|
{
"file_path": "AdaMix/src/transformers/models/electra/modeling_tf_electra.py",
"repo_id": "AdaMix",
"token_count": 26929
}
| 52 |
# coding=utf-8
# Copyright 2019-present CNRS, Facebook Inc. and the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" PyTorch Flaubert model, based on XLM. """
import random
import torch
from torch.nn import functional as F
from ...file_utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward
from ...modeling_outputs import BaseModelOutput
from ...utils import logging
from ..xlm.modeling_xlm import (
XLMForMultipleChoice,
XLMForQuestionAnswering,
XLMForQuestionAnsweringSimple,
XLMForSequenceClassification,
XLMForTokenClassification,
XLMModel,
XLMWithLMHeadModel,
get_masks,
)
from .configuration_flaubert import FlaubertConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "flaubert/flaubert_base_cased"
_CONFIG_FOR_DOC = "FlaubertConfig"
_TOKENIZER_FOR_DOC = "FlaubertTokenizer"
FLAUBERT_PRETRAINED_MODEL_ARCHIVE_LIST = [
"flaubert/flaubert_small_cased",
"flaubert/flaubert_base_uncased",
"flaubert/flaubert_base_cased",
"flaubert/flaubert_large_cased",
# See all Flaubert models at https://huggingface.co/models?filter=flaubert
]
FLAUBERT_START_DOCSTRING = r"""
This model inherits from :class:`~transformers.PreTrainedModel`. Check the superclass documentation for the generic
methods the library implements for all its model (such as downloading or saving, resizing the input embeddings,
pruning heads etc.)
This model is also a PyTorch `torch.nn.Module <https://pytorch.org/docs/stable/nn.html#torch.nn.Module>`__
subclass. Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to
general usage and behavior.
Parameters:
config (:class:`~transformers.FlaubertConfig`): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the :meth:`~transformers.PreTrainedModel.from_pretrained` method to load the model
weights.
"""
FLAUBERT_INPUTS_DOCSTRING = r"""
Args:
input_ids (:obj:`torch.LongTensor` of shape :obj:`(batch_size, sequence_length)`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using :class:`~transformers.FlaubertTokenizer`. See
:meth:`transformers.PreTrainedTokenizer.encode` and :meth:`transformers.PreTrainedTokenizer.__call__` for
details.
`What are input IDs? <../glossary.html#input-ids>`__
attention_mask (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Mask to avoid performing attention on padding token indices. Mask values selected in ``[0, 1]``:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
`What are attention masks? <../glossary.html#attention-mask>`__
token_type_ids (:obj:`torch.LongTensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in ``[0,
1]``:
- 0 corresponds to a `sentence A` token,
- 1 corresponds to a `sentence B` token.
`What are token type IDs? <../glossary.html#token-type-ids>`_
position_ids (:obj:`torch.LongTensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range ``[0,
config.max_position_embeddings - 1]``.
`What are position IDs? <../glossary.html#position-ids>`_
lengths (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Length of each sentence that can be used to avoid performing attention on padding token indices. You can
also use :obj:`attention_mask` for the same result (see above), kept here for compatibility. Indices
selected in ``[0, ..., input_ids.size(-1)]``:
cache (:obj:`Dict[str, torch.FloatTensor]`, `optional`):
Dictionary strings to ``torch.FloatTensor`` that contains precomputed hidden-states (key and values in the
attention blocks) as computed by the model (see :obj:`cache` output below). Can be used to speed up
sequential decoding. The dictionary object will be modified in-place during the forward pass to add newly
computed hidden-states.
head_mask (:obj:`torch.FloatTensor` of shape :obj:`(num_heads,)` or :obj:`(num_layers, num_heads)`, `optional`):
Mask to nullify selected heads of the self-attention modules. Mask values selected in ``[0, 1]``:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length, hidden_size)`, `optional`):
Optionally, instead of passing :obj:`input_ids` you can choose to directly pass an embedded representation.
This is useful if you want more control over how to convert :obj:`input_ids` indices into associated
vectors than the model's internal embedding lookup matrix.
output_attentions (:obj:`bool`, `optional`):
Whether or not to return the attentions tensors of all attention layers. See ``attentions`` under returned
tensors for more detail.
output_hidden_states (:obj:`bool`, `optional`):
Whether or not to return the hidden states of all layers. See ``hidden_states`` under returned tensors for
more detail.
return_dict (:obj:`bool`, `optional`):
Whether or not to return a :class:`~transformers.file_utils.ModelOutput` instead of a plain tuple.
"""
@add_start_docstrings(
"The bare Flaubert Model transformer outputting raw hidden-states without any specific head on top.",
FLAUBERT_START_DOCSTRING,
)
class FlaubertModel(XLMModel):
config_class = FlaubertConfig
def __init__(self, config): # , dico, is_encoder, with_output):
super().__init__(config)
self.layerdrop = getattr(config, "layerdrop", 0.0)
self.pre_norm = getattr(config, "pre_norm", False)
@add_start_docstrings_to_model_forward(FLAUBERT_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=BaseModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids=None,
attention_mask=None,
langs=None,
token_type_ids=None,
position_ids=None,
lengths=None,
cache=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
# removed: src_enc=None, src_len=None
if input_ids is not None:
bs, slen = input_ids.size()
else:
bs, slen = inputs_embeds.size()[:-1]
device = input_ids.device if input_ids is not None else inputs_embeds.device
if lengths is None:
if input_ids is not None:
lengths = (input_ids != self.pad_index).sum(dim=1).long()
else:
lengths = torch.tensor([slen] * bs, device=device)
# mask = input_ids != self.pad_index
# check inputs
assert lengths.size(0) == bs
assert lengths.max().item() <= slen
# input_ids = input_ids.transpose(0, 1) # batch size as dimension 0
# assert (src_enc is None) == (src_len is None)
# if src_enc is not None:
# assert self.is_decoder
# assert src_enc.size(0) == bs
# generate masks
mask, attn_mask = get_masks(slen, lengths, self.causal, padding_mask=attention_mask)
# if self.is_decoder and src_enc is not None:
# src_mask = torch.arange(src_len.max(), dtype=torch.long, device=lengths.device) < src_len[:, None]
# position_ids
if position_ids is None:
position_ids = torch.arange(slen, dtype=torch.long, device=device)
position_ids = position_ids.unsqueeze(0).expand((bs, slen))
else:
assert position_ids.size() == (bs, slen) # (slen, bs)
# position_ids = position_ids.transpose(0, 1)
# langs
if langs is not None:
assert langs.size() == (bs, slen) # (slen, bs)
# langs = langs.transpose(0, 1)
# Prepare head mask if needed
head_mask = self.get_head_mask(head_mask, self.config.n_layers)
# do not recompute cached elements
if cache is not None and input_ids is not None:
_slen = slen - cache["slen"]
input_ids = input_ids[:, -_slen:]
position_ids = position_ids[:, -_slen:]
if langs is not None:
langs = langs[:, -_slen:]
mask = mask[:, -_slen:]
attn_mask = attn_mask[:, -_slen:]
# embeddings
if inputs_embeds is None:
inputs_embeds = self.embeddings(input_ids)
tensor = inputs_embeds + self.position_embeddings(position_ids).expand_as(inputs_embeds)
if langs is not None and self.use_lang_emb and self.config.n_langs > 1:
tensor = tensor + self.lang_embeddings(langs)
if token_type_ids is not None:
tensor = tensor + self.embeddings(token_type_ids)
tensor = self.layer_norm_emb(tensor)
tensor = F.dropout(tensor, p=self.dropout, training=self.training)
tensor *= mask.unsqueeze(-1).to(tensor.dtype)
# transformer layers
hidden_states = () if output_hidden_states else None
attentions = () if output_attentions else None
for i in range(self.n_layers):
# LayerDrop
dropout_probability = random.uniform(0, 1)
if self.training and (dropout_probability < self.layerdrop):
continue
if output_hidden_states:
hidden_states = hidden_states + (tensor,)
# self attention
if not self.pre_norm:
attn_outputs = self.attentions[i](
tensor,
attn_mask,
cache=cache,
head_mask=head_mask[i],
output_attentions=output_attentions,
)
attn = attn_outputs[0]
if output_attentions:
attentions = attentions + (attn_outputs[1],)
attn = F.dropout(attn, p=self.dropout, training=self.training)
tensor = tensor + attn
tensor = self.layer_norm1[i](tensor)
else:
tensor_normalized = self.layer_norm1[i](tensor)
attn_outputs = self.attentions[i](tensor_normalized, attn_mask, cache=cache, head_mask=head_mask[i])
attn = attn_outputs[0]
if output_attentions:
attentions = attentions + (attn_outputs[1],)
attn = F.dropout(attn, p=self.dropout, training=self.training)
tensor = tensor + attn
# encoder attention (for decoder only)
# if self.is_decoder and src_enc is not None:
# attn = self.encoder_attn[i](tensor, src_mask, kv=src_enc, cache=cache)
# attn = F.dropout(attn, p=self.dropout, training=self.training)
# tensor = tensor + attn
# tensor = self.layer_norm15[i](tensor)
# FFN
if not self.pre_norm:
tensor = tensor + self.ffns[i](tensor)
tensor = self.layer_norm2[i](tensor)
else:
tensor_normalized = self.layer_norm2[i](tensor)
tensor = tensor + self.ffns[i](tensor_normalized)
tensor *= mask.unsqueeze(-1).to(tensor.dtype)
# Add last hidden state
if output_hidden_states:
hidden_states = hidden_states + (tensor,)
# update cache length
if cache is not None:
cache["slen"] += tensor.size(1)
# move back sequence length to dimension 0
# tensor = tensor.transpose(0, 1)
if not return_dict:
return tuple(v for v in [tensor, hidden_states, attentions] if v is not None)
return BaseModelOutput(last_hidden_state=tensor, hidden_states=hidden_states, attentions=attentions)
@add_start_docstrings(
"""
The Flaubert Model transformer with a language modeling head on top (linear layer with weights tied to the input
embeddings).
""",
FLAUBERT_START_DOCSTRING,
)
class FlaubertWithLMHeadModel(XLMWithLMHeadModel):
"""
This class overrides :class:`~transformers.XLMWithLMHeadModel`. Please check the superclass for the appropriate
documentation alongside usage examples.
"""
config_class = FlaubertConfig
def __init__(self, config):
super().__init__(config)
self.transformer = FlaubertModel(config)
self.init_weights()
@add_start_docstrings(
"""
Flaubert Model with a sequence classification/regression head on top (a linear layer on top of the pooled output)
e.g. for GLUE tasks.
""",
FLAUBERT_START_DOCSTRING,
)
class FlaubertForSequenceClassification(XLMForSequenceClassification):
"""
This class overrides :class:`~transformers.XLMForSequenceClassification`. Please check the superclass for the
appropriate documentation alongside usage examples.
"""
config_class = FlaubertConfig
def __init__(self, config):
super().__init__(config)
self.transformer = FlaubertModel(config)
self.init_weights()
@add_start_docstrings(
"""
Flaubert Model with a token classification head on top (a linear layer on top of the hidden-states output) e.g. for
Named-Entity-Recognition (NER) tasks.
""",
FLAUBERT_START_DOCSTRING,
)
class FlaubertForTokenClassification(XLMForTokenClassification):
"""
This class overrides :class:`~transformers.XLMForTokenClassification`. Please check the superclass for the
appropriate documentation alongside usage examples.
"""
config_class = FlaubertConfig
def __init__(self, config):
super().__init__(config)
self.transformer = FlaubertModel(config)
self.init_weights()
@add_start_docstrings(
"""
Flaubert Model with a span classification head on top for extractive question-answering tasks like SQuAD (a linear
layers on top of the hidden-states output to compute `span start logits` and `span end logits`).
""",
FLAUBERT_START_DOCSTRING,
)
class FlaubertForQuestionAnsweringSimple(XLMForQuestionAnsweringSimple):
"""
This class overrides :class:`~transformers.XLMForQuestionAnsweringSimple`. Please check the superclass for the
appropriate documentation alongside usage examples.
"""
config_class = FlaubertConfig
def __init__(self, config):
super().__init__(config)
self.transformer = FlaubertModel(config)
self.init_weights()
@add_start_docstrings(
"""
Flaubert Model with a beam-search span classification head on top for extractive question-answering tasks like
SQuAD (a linear layers on top of the hidden-states output to compute `span start logits` and `span end logits`).
""",
FLAUBERT_START_DOCSTRING,
)
class FlaubertForQuestionAnswering(XLMForQuestionAnswering):
"""
This class overrides :class:`~transformers.XLMForQuestionAnswering`. Please check the superclass for the
appropriate documentation alongside usage examples.
"""
config_class = FlaubertConfig
def __init__(self, config):
super().__init__(config)
self.transformer = FlaubertModel(config)
self.init_weights()
@add_start_docstrings(
"""
Flaubert Model with a multiple choice classification head on top (a linear layer on top of the pooled output and a
softmax) e.g. for RocStories/SWAG tasks.
""",
FLAUBERT_START_DOCSTRING,
)
class FlaubertForMultipleChoice(XLMForMultipleChoice):
"""
This class overrides :class:`~transformers.XLMForMultipleChoice`. Please check the superclass for the appropriate
documentation alongside usage examples.
"""
config_class = FlaubertConfig
def __init__(self, config):
super().__init__(config)
self.transformer = FlaubertModel(config)
self.init_weights()
|
AdaMix/src/transformers/models/flaubert/modeling_flaubert.py/0
|
{
"file_path": "AdaMix/src/transformers/models/flaubert/modeling_flaubert.py",
"repo_id": "AdaMix",
"token_count": 7202
}
| 53 |
# coding=utf-8
# Copyright 2018 The OpenAI Team Authors and HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""PyTorch OpenAI GPT-2 model."""
import os
from dataclasses import dataclass
from typing import Optional, Tuple
import torch
import torch.nn as nn
import torch.utils.checkpoint
from torch.nn import CrossEntropyLoss, MSELoss
from ...activations import ACT2FN
from ...file_utils import (
ModelOutput,
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
replace_return_docstrings,
)
from ...modeling_outputs import (
BaseModelOutputWithPastAndCrossAttentions,
CausalLMOutputWithCrossAttentions,
SequenceClassifierOutputWithPast,
)
from ...modeling_utils import (
Conv1D,
PreTrainedModel,
SequenceSummary,
find_pruneable_heads_and_indices,
prune_conv1d_layer,
)
from ...utils import logging
from ...utils.model_parallel_utils import assert_device_map, get_device_map
from .configuration_gpt2 import GPT2Config
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "gpt2"
_CONFIG_FOR_DOC = "GPT2Config"
_TOKENIZER_FOR_DOC = "GPT2Tokenizer"
GPT2_PRETRAINED_MODEL_ARCHIVE_LIST = [
"gpt2",
"gpt2-medium",
"gpt2-large",
"gpt2-xl",
"distilgpt2",
# See all GPT-2 models at https://huggingface.co/models?filter=gpt2
]
def load_tf_weights_in_gpt2(model, config, gpt2_checkpoint_path):
"""Load tf checkpoints in a pytorch model"""
try:
import re
import tensorflow as tf
except ImportError:
logger.error(
"Loading a TensorFlow model in PyTorch, requires TensorFlow to be installed. Please see "
"https://www.tensorflow.org/install/ for installation instructions."
)
raise
tf_path = os.path.abspath(gpt2_checkpoint_path)
logger.info("Converting TensorFlow checkpoint from {}".format(tf_path))
# Load weights from TF model
init_vars = tf.train.list_variables(tf_path)
names = []
arrays = []
for name, shape in init_vars:
logger.info("Loading TF weight {} with shape {}".format(name, shape))
array = tf.train.load_variable(tf_path, name)
names.append(name)
arrays.append(array.squeeze())
for name, array in zip(names, arrays):
name = name[6:] # skip "model/"
name = name.split("/")
pointer = model
for m_name in name:
if re.fullmatch(r"[A-Za-z]+\d+", m_name):
scope_names = re.split(r"(\d+)", m_name)
else:
scope_names = [m_name]
if scope_names[0] == "w" or scope_names[0] == "g":
pointer = getattr(pointer, "weight")
elif scope_names[0] == "b":
pointer = getattr(pointer, "bias")
elif scope_names[0] == "wpe" or scope_names[0] == "wte":
pointer = getattr(pointer, scope_names[0])
pointer = getattr(pointer, "weight")
else:
pointer = getattr(pointer, scope_names[0])
if len(scope_names) >= 2:
num = int(scope_names[1])
pointer = pointer[num]
try:
assert (
pointer.shape == array.shape
), f"Pointer shape {pointer.shape} and array shape {array.shape} mismatched"
except AssertionError as e:
e.args += (pointer.shape, array.shape)
raise
logger.info("Initialize PyTorch weight {}".format(name))
pointer.data = torch.from_numpy(array)
return model
class Attention(nn.Module):
def __init__(self, nx, n_ctx, config, scale=False, is_cross_attention=False):
super().__init__()
n_state = nx # in Attention: n_state=768 (nx=n_embd)
# [switch nx => n_state from Block to Attention to keep identical to TF implem]
assert n_state % config.n_head == 0
self.register_buffer(
"bias", torch.tril(torch.ones((n_ctx, n_ctx), dtype=torch.uint8)).view(1, 1, n_ctx, n_ctx)
)
self.register_buffer("masked_bias", torch.tensor(-1e4))
self.n_head = config.n_head
self.split_size = n_state
self.scale = scale
self.is_cross_attention = is_cross_attention
if self.is_cross_attention:
self.c_attn = Conv1D(2 * n_state, nx)
self.q_attn = Conv1D(n_state, nx)
else:
self.c_attn = Conv1D(3 * n_state, nx)
self.c_proj = Conv1D(n_state, nx)
self.attn_dropout = nn.Dropout(config.attn_pdrop)
self.resid_dropout = nn.Dropout(config.resid_pdrop)
self.pruned_heads = set()
def prune_heads(self, heads):
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.n_head, self.split_size // self.n_head, self.pruned_heads
)
index_attn = torch.cat([index, index + self.split_size, index + (2 * self.split_size)])
# Prune conv1d layers
self.c_attn = prune_conv1d_layer(self.c_attn, index_attn, dim=1)
self.c_proj = prune_conv1d_layer(self.c_proj, index, dim=0)
# Update hyper params
self.split_size = (self.split_size // self.n_head) * (self.n_head - len(heads))
self.n_head = self.n_head - len(heads)
self.pruned_heads = self.pruned_heads.union(heads)
def _attn(self, q, k, v, attention_mask=None, head_mask=None, output_attentions=False):
w = torch.matmul(q, k)
if self.scale:
w = w / (float(v.size(-1)) ** 0.5)
nd, ns = w.size(-2), w.size(-1)
if not self.is_cross_attention:
# if only "normal" attention layer implements causal mask
mask = self.bias[:, :, ns - nd : ns, :ns]
w = torch.where(mask.bool(), w, self.masked_bias.to(w.dtype))
if attention_mask is not None:
# Apply the attention mask
w = w + attention_mask
w = nn.Softmax(dim=-1)(w)
w = self.attn_dropout(w)
# Mask heads if we want to
if head_mask is not None:
w = w * head_mask
outputs = (torch.matmul(w, v),)
if output_attentions:
outputs += (w,)
return outputs
def merge_heads(self, x):
x = x.permute(0, 2, 1, 3).contiguous()
new_x_shape = x.size()[:-2] + (x.size(-2) * x.size(-1),)
return x.view(*new_x_shape) # in Tensorflow implem: fct merge_states
def split_heads(self, x, k=False):
new_x_shape = x.size()[:-1] + (self.n_head, x.size(-1) // self.n_head)
x = x.view(*new_x_shape) # in Tensorflow implem: fct split_states
if k:
return x.permute(0, 2, 3, 1) # (batch, head, head_features, seq_length)
else:
return x.permute(0, 2, 1, 3) # (batch, head, seq_length, head_features)
def forward(
self,
hidden_states,
layer_past=None,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
use_cache=False,
output_attentions=False,
):
if encoder_hidden_states is not None:
assert hasattr(
self, "q_attn"
), "If class is used as cross attention, the weights `q_attn` have to be defined. Please make sure to instantiate class with `Attention(..., is_cross_attention=True)`."
query = self.q_attn(hidden_states)
key, value = self.c_attn(encoder_hidden_states).split(self.split_size, dim=2)
attention_mask = encoder_attention_mask
else:
query, key, value = self.c_attn(hidden_states).split(self.split_size, dim=2)
query = self.split_heads(query)
key = self.split_heads(key, k=True)
value = self.split_heads(value)
if layer_past is not None:
past_key, past_value = layer_past[0].transpose(-2, -1), layer_past[1] # transpose back cf below
key = torch.cat((past_key, key), dim=-1)
value = torch.cat((past_value, value), dim=-2)
if use_cache is True:
present = (key.transpose(-2, -1), value) # transpose to have same shapes
else:
present = None
attn_outputs = self._attn(query, key, value, attention_mask, head_mask, output_attentions)
a = attn_outputs[0]
a = self.merge_heads(a)
a = self.c_proj(a)
a = self.resid_dropout(a)
return (a, present) + attn_outputs[1:] # a, present, (attentions)
class MLP(nn.Module):
def __init__(self, n_state, config): # in MLP: n_state=3072 (4 * n_embd)
super().__init__()
nx = config.n_embd
self.c_fc = Conv1D(n_state, nx)
self.c_proj = Conv1D(nx, n_state)
self.act = ACT2FN[config.activation_function]
self.dropout = nn.Dropout(config.resid_pdrop)
def forward(self, x):
h = self.act(self.c_fc(x))
h2 = self.c_proj(h)
return self.dropout(h2)
class Block(nn.Module):
def __init__(self, n_ctx, config, scale=False):
super().__init__()
hidden_size = config.n_embd
inner_dim = config.n_inner if config.n_inner is not None else 4 * hidden_size
self.ln_1 = nn.LayerNorm(hidden_size, eps=config.layer_norm_epsilon)
self.attn = Attention(hidden_size, n_ctx, config, scale)
self.ln_2 = nn.LayerNorm(hidden_size, eps=config.layer_norm_epsilon)
if config.add_cross_attention:
self.crossattention = Attention(hidden_size, n_ctx, config, scale, is_cross_attention=True)
self.ln_cross_attn = nn.LayerNorm(hidden_size, eps=config.layer_norm_epsilon)
self.mlp = MLP(inner_dim, config)
def forward(
self,
hidden_states,
layer_past=None,
attention_mask=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
use_cache=False,
output_attentions=False,
):
attn_outputs = self.attn(
self.ln_1(hidden_states),
layer_past=layer_past,
attention_mask=attention_mask,
head_mask=head_mask,
use_cache=use_cache,
output_attentions=output_attentions,
)
attn_output = attn_outputs[0] # output_attn: a, present, (attentions)
outputs = attn_outputs[1:]
# residual connection
hidden_states = attn_output + hidden_states
if encoder_hidden_states is not None:
# add one self-attention block for cross-attention
assert hasattr(
self, "crossattention"
), f"If `encoder_hidden_states` are passed, {self} has to be instantiated with cross-attention layers by setting `config.add_cross_attention=True`"
cross_attn_outputs = self.crossattention(
self.ln_cross_attn(hidden_states),
attention_mask=attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
output_attentions=output_attentions,
)
attn_output = cross_attn_outputs[0]
# residual connection
hidden_states = hidden_states + attn_output
outputs = outputs + cross_attn_outputs[2:] # add cross attentions if we output attention weights
feed_forward_hidden_states = self.mlp(self.ln_2(hidden_states))
# residual connection
hidden_states = hidden_states + feed_forward_hidden_states
if use_cache:
outputs = (hidden_states,) + outputs
else:
outputs = (hidden_states,) + outputs[1:]
return outputs # hidden_states, present, (attentions, cross_attentions)
class GPT2PreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = GPT2Config
load_tf_weights = load_tf_weights_in_gpt2
base_model_prefix = "transformer"
is_parallelizable = True
def __init__(self, *inputs, **kwargs):
super().__init__(*inputs, **kwargs)
def _init_weights(self, module):
"""Initialize the weights."""
if isinstance(module, (nn.Linear, Conv1D)):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, nn.Embedding):
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
elif isinstance(module, nn.LayerNorm):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
@dataclass
class GPT2DoubleHeadsModelOutput(ModelOutput):
"""
Base class for outputs of models predicting if two sentences are consecutive or not.
Args:
loss (:obj:`torch.FloatTensor` of shape :obj:`(1,)`, `optional`, returned when ``labels`` is provided):
Language modeling loss.
mc_loss (:obj:`torch.FloatTensor` of shape :obj:`(1,)`, `optional`, returned when :obj:`mc_labels` is provided):
Multiple choice classification loss.
logits (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, num_choices, sequence_length, config.vocab_size)`):
Prediction scores of the language modeling head (scores for each vocabulary token before SoftMax).
mc_logits (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, num_choices)`):
Prediction scores of the multiple choice classification head (scores for each choice before SoftMax).
past_key_values (:obj:`Tuple[Tuple[torch.Tensor]]`, `optional`, returned when ``use_cache=True`` is passed or when ``config.use_cache=True``):
Tuple of length :obj:`config.n_layers`, containing tuples of tensors of shape :obj:`(batch_size, num_heads,
sequence_length, embed_size_per_head)`).
Contains pre-computed hidden-states (key and values in the attention blocks) that can be used (see
:obj:`past_key_values` input) to speed up sequential decoding.
hidden_states (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``output_hidden_states=True`` is passed or when ``config.output_hidden_states=True``):
Tuple of :obj:`torch.FloatTensor` (one for the output of the embeddings + one for the output of each layer)
of shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(torch.FloatTensor)`, `optional`, returned when ``output_attentions=True`` is passed or when ``config.output_attentions=True``):
Tuple of :obj:`torch.FloatTensor` (one for each layer) of shape :obj:`(batch_size, num_heads,
sequence_length, sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
loss: Optional[torch.FloatTensor] = None
mc_loss: Optional[torch.FloatTensor] = None
logits: torch.FloatTensor = None
mc_logits: torch.FloatTensor = None
past_key_values: Optional[Tuple[Tuple[torch.FloatTensor]]] = None
hidden_states: Optional[Tuple[torch.FloatTensor]] = None
attentions: Optional[Tuple[torch.FloatTensor]] = None
GPT2_START_DOCSTRING = r"""
This model inherits from :class:`~transformers.PreTrainedModel`. Check the superclass documentation for the generic
methods the library implements for all its model (such as downloading or saving, resizing the input embeddings,
pruning heads etc.)
This model is also a PyTorch `torch.nn.Module <https://pytorch.org/docs/stable/nn.html#torch.nn.Module>`__
subclass. Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to
general usage and behavior.
Parameters:
config (:class:`~transformers.GPT2Config`): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the :meth:`~transformers.PreTrainedModel.from_pretrained` method to load the model
weights.
"""
GPT2_INPUTS_DOCSTRING = r"""
Args:
input_ids (:obj:`torch.LongTensor` of shape :obj:`(batch_size, input_ids_length)`):
:obj:`input_ids_length` = ``sequence_length`` if :obj:`past_key_values` is ``None`` else
``past_key_values[0][0].shape[-2]`` (``sequence_length`` of input past key value states). Indices of input
sequence tokens in the vocabulary.
If :obj:`past_key_values` is used, only ``input_ids`` that do not have their past calculated should be
passed as ``input_ids``.
Indices can be obtained using :class:`~transformers.GPT2Tokenizer`. See
:meth:`transformers.PreTrainedTokenizer.encode` and :meth:`transformers.PreTrainedTokenizer.__call__` for
details.
`What are input IDs? <../glossary.html#input-ids>`__
past_key_values (:obj:`Tuple[Tuple[torch.Tensor]]` of length :obj:`config.n_layers`):
Contains precomputed hidden-states (key and values in the attention blocks) as computed by the model (see
:obj:`past_key_values` output below). Can be used to speed up sequential decoding. The ``input_ids`` which
have their past given to this model should not be passed as ``input_ids`` as they have already been
computed.
attention_mask (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Mask to avoid performing attention on padding token indices. Mask values selected in ``[0, 1]``:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
`What are attention masks? <../glossary.html#attention-mask>`__
token_type_ids (:obj:`torch.LongTensor` of shape :obj:`(batch_size, input_ids_length)`, `optional`):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in ``[0,
1]``:
- 0 corresponds to a `sentence A` token,
- 1 corresponds to a `sentence B` token.
`What are token type IDs? <../glossary.html#token-type-ids>`_
position_ids (:obj:`torch.LongTensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range ``[0,
config.max_position_embeddings - 1]``.
`What are position IDs? <../glossary.html#position-ids>`_
head_mask (:obj:`torch.FloatTensor` of shape :obj:`(num_heads,)` or :obj:`(num_layers, num_heads)`, `optional`):
Mask to nullify selected heads of the self-attention modules. Mask values selected in ``[0, 1]``:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (:obj:`torch.FloatTensor` of shape :obj:`(batch_size, sequence_length, hidden_size)`, `optional`):
Optionally, instead of passing :obj:`input_ids` you can choose to directly pass an embedded representation.
This is useful if you want more control over how to convert :obj:`input_ids` indices into associated
vectors than the model's internal embedding lookup matrix.
If :obj:`past_key_values` is used, optionally only the last :obj:`inputs_embeds` have to be input (see
:obj:`past_key_values`).
use_cache (:obj:`bool`, `optional`):
If set to :obj:`True`, :obj:`past_key_values` key value states are returned and can be used to speed up
decoding (see :obj:`past_key_values`).
output_attentions (:obj:`bool`, `optional`):
Whether or not to return the attentions tensors of all attention layers. See ``attentions`` under returned
tensors for more detail.
output_hidden_states (:obj:`bool`, `optional`):
Whether or not to return the hidden states of all layers. See ``hidden_states`` under returned tensors for
more detail.
return_dict (:obj:`bool`, `optional`):
Whether or not to return a :class:`~transformers.file_utils.ModelOutput` instead of a plain tuple.
"""
PARALLELIZE_DOCSTRING = r"""
This is an experimental feature and is a subject to change at a moment's notice.
Uses a device map to distribute attention modules of the model across several devices. If no device map is given,
it will evenly distribute blocks across all devices.
Args:
device_map (:obj:`Dict[int, list]`, optional, defaults to None):
A dictionary that maps attention modules to devices. Note that the embedding module and LMHead are always
automatically mapped to the first device (for esoteric reasons). That means that the first device should
have fewer attention modules mapped to it than other devices. For reference, the gpt2 models have the
following number of attention modules:
- gpt2: 12
- gpt2-medium: 24
- gpt2-large: 36
- gpt2-xl: 48
Example::
# Here is an example of a device map on a machine with 4 GPUs using gpt2-xl, which has a total of 48 attention modules:
model = GPT2LMHeadModel.from_pretrained('gpt2-xl')
device_map = {0: [0, 1, 2, 3, 4, 5, 6, 7, 8],
1: [9, 10, 11, 12, 13, 14, 15, 16, 17, 18, 19, 20, 21],
2: [22, 23, 24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34],
3: [35, 36, 37, 38, 39, 40, 41, 42, 43, 44, 45, 46, 47]}
model.parallelize(device_map)
"""
DEPARALLELIZE_DOCSTRING = r"""
Moves the model to cpu from a model parallel state.
Example::
# On a 4 GPU machine with gpt2-large:
model = GPT2LMHeadModel.from_pretrained('gpt2-large')
device_map = {0: [0, 1, 2, 3, 4, 5, 6, 7],
1: [8, 9, 10, 11, 12, 13, 14, 15],
2: [16, 17, 18, 19, 20, 21, 22, 23],
3: [24, 25, 26, 27, 28, 29, 30, 31, 32, 33, 34, 35]}
model.parallelize(device_map) # Splits the model across several devices
model.deparallelize() # Put the model back on cpu and cleans memory by calling torch.cuda.empty_cache()
"""
@add_start_docstrings(
"The bare GPT2 Model transformer outputting raw hidden-states without any specific head on top.",
GPT2_START_DOCSTRING,
)
class GPT2Model(GPT2PreTrainedModel):
def __init__(self, config):
super().__init__(config)
self.wte = nn.Embedding(config.vocab_size, config.n_embd)
self.wpe = nn.Embedding(config.n_positions, config.n_embd)
self.drop = nn.Dropout(config.embd_pdrop)
self.h = nn.ModuleList([Block(config.n_ctx, config, scale=True) for _ in range(config.n_layer)])
self.ln_f = nn.LayerNorm(config.n_embd, eps=config.layer_norm_epsilon)
self.init_weights()
# Model parallel
self.model_parallel = False
self.device_map = None
@add_start_docstrings(PARALLELIZE_DOCSTRING)
def parallelize(self, device_map=None):
# Check validity of device_map
self.device_map = (
get_device_map(len(self.h), range(torch.cuda.device_count())) if device_map is None else device_map
)
assert_device_map(self.device_map, len(self.h))
self.model_parallel = True
self.first_device = "cpu" if "cpu" in self.device_map.keys() else "cuda:" + str(min(self.device_map.keys()))
self.last_device = "cuda:" + str(max(self.device_map.keys()))
self.wte = self.wte.to(self.first_device)
self.wpe = self.wpe.to(self.first_device)
# Load onto devices
for k, v in self.device_map.items():
for block in v:
cuda_device = "cuda:" + str(k)
self.h[block] = self.h[block].to(cuda_device)
# ln_f to last
self.ln_f = self.ln_f.to(self.last_device)
@add_start_docstrings(DEPARALLELIZE_DOCSTRING)
def deparallelize(self):
self.model_parallel = False
self.device_map = None
self.first_device = "cpu"
self.last_device = "cpu"
self.wte = self.wte.to("cpu")
self.wpe = self.wpe.to("cpu")
for index in range(len(self.h)):
self.h[index] = self.h[index].to("cpu")
self.ln_f = self.ln_f.to("cpu")
torch.cuda.empty_cache()
def get_input_embeddings(self):
return self.wte
def set_input_embeddings(self, new_embeddings):
self.wte = new_embeddings
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer}
"""
for layer, heads in heads_to_prune.items():
self.h[layer].attn.prune_heads(heads)
@add_start_docstrings_to_model_forward(GPT2_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=BaseModelOutputWithPastAndCrossAttentions,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids=None,
past_key_values=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
use_cache=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
use_cache = use_cache if use_cache is not None else self.config.use_cache
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = input_ids.size()
input_ids = input_ids.view(-1, input_shape[-1])
batch_size = input_ids.shape[0]
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
batch_size = inputs_embeds.shape[0]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
if token_type_ids is not None:
token_type_ids = token_type_ids.view(-1, input_shape[-1])
if position_ids is not None:
position_ids = position_ids.view(-1, input_shape[-1])
if past_key_values is None:
past_length = 0
past_key_values = tuple([None] * len(self.h))
else:
past_length = past_key_values[0][0].size(-2)
if position_ids is None:
device = input_ids.device if input_ids is not None else inputs_embeds.device
position_ids = torch.arange(past_length, input_shape[-1] + past_length, dtype=torch.long, device=device)
position_ids = position_ids.unsqueeze(0).view(-1, input_shape[-1])
# Attention mask.
if attention_mask is not None:
assert batch_size > 0, "batch_size has to be defined and > 0"
attention_mask = attention_mask.view(batch_size, -1)
# We create a 3D attention mask from a 2D tensor mask.
# Sizes are [batch_size, 1, 1, to_seq_length]
# So we can broadcast to [batch_size, num_heads, from_seq_length, to_seq_length]
# this attention mask is more simple than the triangular masking of causal attention
# used in OpenAI GPT, we just need to prepare the broadcast dimension here.
attention_mask = attention_mask[:, None, None, :]
# Since attention_mask is 1.0 for positions we want to attend and 0.0 for
# masked positions, this operation will create a tensor which is 0.0 for
# positions we want to attend and -10000.0 for masked positions.
# Since we are adding it to the raw scores before the softmax, this is
# effectively the same as removing these entirely.
attention_mask = attention_mask.to(dtype=self.dtype) # fp16 compatibility
attention_mask = (1.0 - attention_mask) * -10000.0
# If a 2D ou 3D attention mask is provided for the cross-attention
# we need to make broadcastable to [batch_size, num_heads, seq_length, seq_length]
if self.config.add_cross_attention and encoder_hidden_states is not None:
encoder_batch_size, encoder_sequence_length, _ = encoder_hidden_states.size()
encoder_hidden_shape = (encoder_batch_size, encoder_sequence_length)
if encoder_attention_mask is None:
encoder_attention_mask = torch.ones(encoder_hidden_shape, device=device)
encoder_attention_mask = self.invert_attention_mask(encoder_attention_mask)
else:
encoder_attention_mask = None
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# head_mask has shape n_layer x batch x n_heads x N x N
head_mask = self.get_head_mask(head_mask, self.config.n_layer)
if inputs_embeds is None:
inputs_embeds = self.wte(input_ids)
position_embeds = self.wpe(position_ids)
hidden_states = inputs_embeds + position_embeds
if token_type_ids is not None:
token_type_embeds = self.wte(token_type_ids)
hidden_states = hidden_states + token_type_embeds
hidden_states = self.drop(hidden_states)
output_shape = input_shape + (hidden_states.size(-1),)
presents = () if use_cache else None
all_self_attentions = () if output_attentions else None
all_cross_attentions = () if output_attentions and self.config.add_cross_attention else None
all_hidden_states = () if output_hidden_states else None
for i, (block, layer_past) in enumerate(zip(self.h, past_key_values)):
# Model parallel
if self.model_parallel:
torch.cuda.set_device(hidden_states.device)
# Ensure layer_past is on same device as hidden_states (might not be correct)
if layer_past is not None:
layer_past = tuple(past_state.to(hidden_states.device) for past_state in layer_past)
# Ensure that attention_mask is always on the same device as hidden_states
if attention_mask is not None:
attention_mask = attention_mask.to(hidden_states.device)
if isinstance(head_mask, torch.Tensor):
head_mask = head_mask.to(hidden_states.device)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if getattr(self.config, "gradient_checkpointing", False) and self.training:
if use_cache:
logger.warn(
"`use_cache=True` is incompatible with `config.gradient_checkpointing=True`. Setting "
"`use_cache=False`..."
)
use_cache = False
def create_custom_forward(module):
def custom_forward(*inputs):
# None for past_key_value
return module(*inputs, use_cache, output_attentions)
return custom_forward
outputs = torch.utils.checkpoint.checkpoint(
create_custom_forward(block),
hidden_states,
None,
attention_mask,
head_mask[i],
encoder_hidden_states,
encoder_attention_mask,
)
else:
outputs = block(
hidden_states,
layer_past=layer_past,
attention_mask=attention_mask,
head_mask=head_mask[i],
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
use_cache=use_cache,
output_attentions=output_attentions,
)
hidden_states = outputs[0]
if use_cache is True:
presents = presents + (outputs[1],)
if output_attentions:
all_self_attentions = all_self_attentions + (outputs[2 if use_cache else 1],)
if self.config.add_cross_attention:
all_cross_attentions = all_cross_attentions + (outputs[3 if use_cache else 2],)
# Model Parallel: If it's the last layer for that device, put things on the next device
if self.model_parallel:
for k, v in self.device_map.items():
if i == v[-1] and "cuda:" + str(k) != self.last_device:
hidden_states = hidden_states.to("cuda:" + str(k + 1))
hidden_states = self.ln_f(hidden_states)
hidden_states = hidden_states.view(*output_shape)
# Add last hidden state
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, presents, all_hidden_states, all_self_attentions] if v is not None)
return BaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=presents,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
cross_attentions=all_cross_attentions,
)
@add_start_docstrings(
"""
The GPT2 Model transformer with a language modeling head on top (linear layer with weights tied to the input
embeddings).
""",
GPT2_START_DOCSTRING,
)
class GPT2LMHeadModel(GPT2PreTrainedModel):
_keys_to_ignore_on_load_missing = [r"h\.\d+\.attn\.masked_bias", r"lm_head\.weight"]
def __init__(self, config):
super().__init__(config)
self.transformer = GPT2Model(config)
self.lm_head = nn.Linear(config.n_embd, config.vocab_size, bias=False)
self.init_weights()
# Model parallel
self.model_parallel = False
self.device_map = None
@add_start_docstrings(PARALLELIZE_DOCSTRING)
def parallelize(self, device_map=None):
self.device_map = (
get_device_map(len(self.transformer.h), range(torch.cuda.device_count()))
if device_map is None
else device_map
)
assert_device_map(self.device_map, len(self.transformer.h))
self.transformer.parallelize(self.device_map)
self.lm_head = self.lm_head.to(self.transformer.first_device)
self.model_parallel = True
@add_start_docstrings(DEPARALLELIZE_DOCSTRING)
def deparallelize(self):
self.transformer.deparallelize()
self.transformer = self.transformer.to("cpu")
self.lm_head = self.lm_head.to("cpu")
self.model_parallel = False
torch.cuda.empty_cache()
def get_output_embeddings(self):
return self.lm_head
def set_output_embeddings(self, new_embeddings):
self.lm_head = new_embeddings
def prepare_inputs_for_generation(self, input_ids, past=None, **kwargs):
token_type_ids = kwargs.get("token_type_ids", None)
# only last token for inputs_ids if past is defined in kwargs
if past:
input_ids = input_ids[:, -1].unsqueeze(-1)
if token_type_ids is not None:
token_type_ids = token_type_ids[:, -1].unsqueeze(-1)
attention_mask = kwargs.get("attention_mask", None)
position_ids = kwargs.get("position_ids", None)
if attention_mask is not None and position_ids is None:
# create position_ids on the fly for batch generation
position_ids = attention_mask.long().cumsum(-1) - 1
position_ids.masked_fill_(attention_mask == 0, 1)
if past:
position_ids = position_ids[:, -1].unsqueeze(-1)
else:
position_ids = None
return {
"input_ids": input_ids,
"past_key_values": past,
"use_cache": kwargs.get("use_cache"),
"position_ids": position_ids,
"attention_mask": attention_mask,
"token_type_ids": token_type_ids,
}
@add_start_docstrings_to_model_forward(GPT2_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=CausalLMOutputWithCrossAttentions,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids=None,
past_key_values=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
labels=None,
use_cache=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
r"""
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Labels for language modeling. Note that the labels **are shifted** inside the model, i.e. you can set
``labels = input_ids`` Indices are selected in ``[-100, 0, ..., config.vocab_size]`` All labels set to
``-100`` are ignored (masked), the loss is only computed for labels in ``[0, ..., config.vocab_size]``
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
transformer_outputs = self.transformer(
input_ids,
past_key_values=past_key_values,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = transformer_outputs[0]
# Set device for model parallelism
if self.model_parallel:
torch.cuda.set_device(self.transformer.first_device)
hidden_states = hidden_states.to(self.lm_head.weight.device)
lm_logits = self.lm_head(hidden_states)
loss = None
if labels is not None:
# Shift so that tokens < n predict n
shift_logits = lm_logits[..., :-1, :].contiguous()
shift_labels = labels[..., 1:].contiguous()
# Flatten the tokens
loss_fct = CrossEntropyLoss()
loss = loss_fct(shift_logits.view(-1, shift_logits.size(-1)), shift_labels.view(-1))
if not return_dict:
output = (lm_logits,) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return CausalLMOutputWithCrossAttentions(
loss=loss,
logits=lm_logits,
past_key_values=transformer_outputs.past_key_values,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
cross_attentions=transformer_outputs.cross_attentions,
)
@staticmethod
def _reorder_cache(past: Tuple[Tuple[torch.Tensor]], beam_idx: torch.Tensor) -> Tuple[Tuple[torch.Tensor]]:
"""
This function is used to re-order the :obj:`past_key_values` cache if
:meth:`~transformers.PretrainedModel.beam_search` or :meth:`~transformers.PretrainedModel.beam_sample` is
called. This is required to match :obj:`past_key_values` with the correct beam_idx at every generation step.
"""
return tuple(
tuple(past_state.index_select(0, beam_idx.to(past_state.device)) for past_state in layer_past)
for layer_past in past
)
@add_start_docstrings(
"""
The GPT2 Model transformer with a language modeling and a multiple-choice classification head on top e.g. for
RocStories/SWAG tasks. The two heads are two linear layers. The language modeling head has its weights tied to the
input embeddings, the classification head takes as input the input of a specified classification token index in the
input sequence).
""",
GPT2_START_DOCSTRING,
)
class GPT2DoubleHeadsModel(GPT2PreTrainedModel):
def __init__(self, config):
super().__init__(config)
config.num_labels = 1
self.transformer = GPT2Model(config)
self.lm_head = nn.Linear(config.n_embd, config.vocab_size, bias=False)
self.multiple_choice_head = SequenceSummary(config)
self.init_weights()
# Model parallel
self.model_parallel = False
self.device_map = None
@add_start_docstrings(PARALLELIZE_DOCSTRING)
def parallelize(self, device_map=None):
self.device_map = (
get_device_map(len(self.transformer.h), range(torch.cuda.device_count()))
if device_map is None
else device_map
)
assert_device_map(self.device_map, len(self.transformer.h))
self.transformer.parallelize(self.device_map)
self.lm_head = self.lm_head.to(self.transformer.first_device)
self.multiple_choice_head = self.multiple_choice_head.to(self.transformer.first_device)
self.model_parallel = True
@add_start_docstrings(DEPARALLELIZE_DOCSTRING)
def deparallelize(self):
self.transformer.deparallelize()
self.transformer = self.transformer.to("cpu")
self.lm_head = self.lm_head.to("cpu")
self.multiple_choice_head = self.multiple_choice_head.to("cpu")
self.model_parallel = False
torch.cuda.empty_cache()
def get_output_embeddings(self):
return self.lm_head
def set_output_embeddings(self, new_embeddings):
self.lm_head = new_embeddings
def prepare_inputs_for_generation(self, input_ids, past=None, **kwargs):
token_type_ids = kwargs.get("token_type_ids", None)
# only last token for inputs_ids if past is defined in kwargs
if past:
input_ids = input_ids[:, -1].unsqueeze(-1)
if token_type_ids is not None:
token_type_ids = token_type_ids[:, -1].unsqueeze(-1)
attention_mask = kwargs.get("attention_mask", None)
position_ids = kwargs.get("position_ids", None)
if attention_mask is not None and position_ids is None:
# create position_ids on the fly for batch generation
position_ids = attention_mask.long().cumsum(-1) - 1
position_ids.masked_fill_(attention_mask == 0, 1)
if past:
position_ids = position_ids[:, -1].unsqueeze(-1)
else:
position_ids = None
return {
"input_ids": input_ids,
"past_key_values": past,
"use_cache": kwargs.get("use_cache"),
"position_ids": position_ids,
"attention_mask": attention_mask,
"token_type_ids": token_type_ids,
}
@add_start_docstrings_to_model_forward(GPT2_INPUTS_DOCSTRING)
@replace_return_docstrings(output_type=GPT2DoubleHeadsModelOutput, config_class=_CONFIG_FOR_DOC)
def forward(
self,
input_ids=None,
past_key_values=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
mc_token_ids=None,
labels=None,
mc_labels=None,
use_cache=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
**kwargs,
):
r"""
mc_token_ids (:obj:`torch.LongTensor` of shape :obj:`(batch_size, num_choices)`, `optional`, default to index of the last token of the input):
Index of the classification token in each input sequence. Selected in the range ``[0, input_ids.size(-1) -
1[``.
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Labels for language modeling. Note that the labels **are shifted** inside the model, i.e. you can set
``labels = input_ids`` Indices are selected in ``[-100, 0, ..., config.vocab_size - 1]`` All labels set to
``-100`` are ignored (masked), the loss is only computed for labels in ``[0, ..., config.vocab_size - 1]``
mc_labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size)`, `optional`):
Labels for computing the multiple choice classification loss. Indices should be in ``[0, ...,
num_choices]`` where `num_choices` is the size of the second dimension of the input tensors. (see
`input_ids` above)
Return:
Example::
>>> import torch
>>> from transformers import GPT2Tokenizer, GPT2DoubleHeadsModel
>>> tokenizer = GPT2Tokenizer.from_pretrained('gpt2')
>>> model = GPT2DoubleHeadsModel.from_pretrained('gpt2')
>>> # Add a [CLS] to the vocabulary (we should train it also!)
>>> num_added_tokens = tokenizer.add_special_tokens({'cls_token': '[CLS]'})
>>> embedding_layer = model.resize_token_embeddings(len(tokenizer)) # Update the model embeddings with the new vocabulary size
>>> choices = ["Hello, my dog is cute [CLS]", "Hello, my cat is cute [CLS]"]
>>> encoded_choices = [tokenizer.encode(s) for s in choices]
>>> cls_token_location = [tokens.index(tokenizer.cls_token_id) for tokens in encoded_choices]
>>> input_ids = torch.tensor(encoded_choices).unsqueeze(0) # Batch size: 1, number of choices: 2
>>> mc_token_ids = torch.tensor([cls_token_location]) # Batch size: 1
>>> outputs = model(input_ids, mc_token_ids=mc_token_ids)
>>> lm_logits = outputs.logits
>>> mc_logits = outputs.mc_logits
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
transformer_outputs = self.transformer(
input_ids,
past_key_values=past_key_values,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = transformer_outputs[0]
# Set device for model parallelism
if self.model_parallel:
torch.cuda.set_device(self.transformer.first_device)
hidden_states = hidden_states.to(self.lm_head.weight.device)
lm_logits = self.lm_head(hidden_states)
mc_logits = self.multiple_choice_head(hidden_states, mc_token_ids).squeeze(-1)
mc_loss = None
if mc_labels is not None:
loss_fct = CrossEntropyLoss()
mc_loss = loss_fct(mc_logits.view(-1, mc_logits.size(-1)), mc_labels.view(-1))
lm_loss = None
if labels is not None:
shift_logits = lm_logits[..., :-1, :].contiguous()
shift_labels = labels[..., 1:].contiguous()
loss_fct = CrossEntropyLoss()
lm_loss = loss_fct(shift_logits.view(-1, shift_logits.size(-1)), shift_labels.view(-1))
if not return_dict:
output = (lm_logits, mc_logits) + transformer_outputs[1:]
if mc_loss is not None:
output = (mc_loss,) + output
return ((lm_loss,) + output) if lm_loss is not None else output
return GPT2DoubleHeadsModelOutput(
loss=lm_loss,
mc_loss=mc_loss,
logits=lm_logits,
mc_logits=mc_logits,
past_key_values=transformer_outputs.past_key_values,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
@staticmethod
def _reorder_cache(past: Tuple[Tuple[torch.Tensor]], beam_idx: torch.Tensor) -> Tuple[Tuple[torch.Tensor]]:
"""
This function is used to re-order the :obj:`past_key_values` cache if
:meth:`~transformers.PretrainedModel.beam_search` or :meth:`~transformers.PretrainedModel.beam_sample` is
called. This is required to match :obj:`past_key_values` with the correct beam_idx at every generation step.
"""
return tuple(
tuple(past_state.index_select(0, beam_idx.to(past_state.device)) for past_state in layer_past)
for layer_past in past
)
@add_start_docstrings(
"""
The GPT2 Model transformer with a sequence classification head on top (linear layer).
:class:`~transformers.GPT2ForSequenceClassification` uses the last token in order to do the classification, as
other causal models (e.g. GPT-1) do.
Since it does classification on the last token, it requires to know the position of the last token. If a
:obj:`pad_token_id` is defined in the configuration, it finds the last token that is not a padding token in each
row. If no :obj:`pad_token_id` is defined, it simply takes the last value in each row of the batch. Since it cannot
guess the padding tokens when :obj:`inputs_embeds` are passed instead of :obj:`input_ids`, it does the same (take
the last value in each row of the batch).
""",
GPT2_START_DOCSTRING,
)
class GPT2ForSequenceClassification(GPT2PreTrainedModel):
_keys_to_ignore_on_load_missing = [r"h\.\d+\.attn\.masked_bias", r"lm_head\.weight"]
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.transformer = GPT2Model(config)
self.score = nn.Linear(config.n_embd, self.num_labels, bias=False)
self.init_weights()
# Model parallel
self.model_parallel = False
self.device_map = None
@add_start_docstrings_to_model_forward(GPT2_INPUTS_DOCSTRING)
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint="microsoft/dialogrpt",
output_type=SequenceClassifierOutputWithPast,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids=None,
past_key_values=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
labels=None,
use_cache=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
r"""
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for computing the sequence classification/regression loss. Indices should be in :obj:`[0, ...,
config.num_labels - 1]`. If :obj:`config.num_labels == 1` a regression loss is computed (Mean-Square loss),
If :obj:`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
transformer_outputs = self.transformer(
input_ids,
past_key_values=past_key_values,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
use_cache=use_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = transformer_outputs[0]
logits = self.score(hidden_states)
if input_ids is not None:
batch_size, sequence_length = input_ids.shape[:2]
else:
batch_size, sequence_length = inputs_embeds.shape[:2]
assert (
self.config.pad_token_id is not None or batch_size == 1
), "Cannot handle batch sizes > 1 if no padding token is defined."
if self.config.pad_token_id is None:
sequence_lengths = -1
else:
if input_ids is not None:
sequence_lengths = torch.ne(input_ids, self.config.pad_token_id).sum(-1) - 1
else:
sequence_lengths = -1
logger.warning(
f"{self.__class__.__name__} will not detect padding tokens in `inputs_embeds`. Results may be "
f"unexpected if using padding tokens in conjunction with `inputs_embeds.`"
)
pooled_logits = logits[range(batch_size), sequence_lengths]
loss = None
if labels is not None:
if self.num_labels == 1:
# We are doing regression
loss_fct = MSELoss()
loss = loss_fct(pooled_logits.view(-1), labels.to(self.dtype).view(-1))
else:
loss_fct = CrossEntropyLoss()
loss = loss_fct(pooled_logits.view(-1, self.num_labels), labels.view(-1))
if not return_dict:
output = (pooled_logits,) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return SequenceClassifierOutputWithPast(
loss=loss,
logits=pooled_logits,
past_key_values=transformer_outputs.past_key_values,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
|
AdaMix/src/transformers/models/gpt2/modeling_gpt2.py/0
|
{
"file_path": "AdaMix/src/transformers/models/gpt2/modeling_gpt2.py",
"repo_id": "AdaMix",
"token_count": 24860
}
| 54 |
# coding=utf-8
# Copyright 2021 The I-BERT Authors (Sehoon Kim, Amir Gholami, Zhewei Yao,
# Michael Mahoney, Kurt Keutzer - UC Berkeley) and The HuggingFace Inc. team.
# Copyright (c) 20121, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""PyTorch I-BERT model. """
import math
import torch
import torch.nn as nn
import torch.utils.checkpoint
from torch.nn import CrossEntropyLoss, MSELoss
from ...activations import gelu
from ...file_utils import add_code_sample_docstrings, add_start_docstrings, add_start_docstrings_to_model_forward
from ...modeling_outputs import (
BaseModelOutputWithPastAndCrossAttentions,
BaseModelOutputWithPoolingAndCrossAttentions,
MaskedLMOutput,
MultipleChoiceModelOutput,
QuestionAnsweringModelOutput,
SequenceClassifierOutput,
TokenClassifierOutput,
)
from ...modeling_utils import PreTrainedModel, find_pruneable_heads_and_indices, prune_linear_layer
from ...utils import logging
from .configuration_ibert import IBertConfig
from .quant_modules import IntGELU, IntLayerNorm, IntSoftmax, QuantAct, QuantEmbedding, QuantLinear
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "ibert-roberta-base"
_CONFIG_FOR_DOC = "IBertConfig"
_TOKENIZER_FOR_DOC = "RobertaTokenizer"
IBERT_PRETRAINED_MODEL_ARCHIVE_LIST = [
"kssteven/ibert-roberta-base",
"kssteven/ibert-roberta-large",
"kssteven/ibert-roberta-large-mnli",
]
class IBertEmbeddings(nn.Module):
"""
Same as BertEmbeddings with a tiny tweak for positional embeddings indexing.
"""
def __init__(self, config):
super().__init__()
self.quant_mode = config.quant_mode
self.embedding_bit = 8
self.embedding_act_bit = 16
self.act_bit = 8
self.ln_input_bit = 22
self.ln_output_bit = 32
self.word_embeddings = QuantEmbedding(
config.vocab_size,
config.hidden_size,
padding_idx=config.pad_token_id,
weight_bit=self.embedding_bit,
quant_mode=self.quant_mode,
)
self.token_type_embeddings = QuantEmbedding(
config.type_vocab_size, config.hidden_size, weight_bit=self.embedding_bit, quant_mode=self.quant_mode
)
# position_ids (1, len position emb) is contiguous in memory and exported when serialized
self.register_buffer("position_ids", torch.arange(config.max_position_embeddings).expand((1, -1)))
self.position_embedding_type = getattr(config, "position_embedding_type", "absolute")
# End copy
self.padding_idx = config.pad_token_id
self.position_embeddings = QuantEmbedding(
config.max_position_embeddings,
config.hidden_size,
padding_idx=self.padding_idx,
weight_bit=self.embedding_bit,
quant_mode=self.quant_mode,
)
# Integer-only addition between embeddings
self.embeddings_act1 = QuantAct(self.embedding_act_bit, quant_mode=self.quant_mode)
self.embeddings_act2 = QuantAct(self.embedding_act_bit, quant_mode=self.quant_mode)
# self.LayerNorm is not snake-cased to stick with TensorFlow model variable name and be able to load
# any TensorFlow checkpoint file
self.LayerNorm = IntLayerNorm(
config.hidden_size,
eps=config.layer_norm_eps,
output_bit=self.ln_output_bit,
quant_mode=self.quant_mode,
force_dequant=config.force_dequant,
)
self.output_activation = QuantAct(self.act_bit, quant_mode=self.quant_mode)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(
self, input_ids=None, token_type_ids=None, position_ids=None, inputs_embeds=None, past_key_values_length=0
):
if position_ids is None:
if input_ids is not None:
# Create the position ids from the input token ids. Any padded tokens remain padded.
position_ids = create_position_ids_from_input_ids(
input_ids, self.padding_idx, past_key_values_length
).to(input_ids.device)
else:
position_ids = self.create_position_ids_from_inputs_embeds(inputs_embeds)
if input_ids is not None:
input_shape = input_ids.size()
else:
input_shape = inputs_embeds.size()[:-1]
if token_type_ids is None:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=self.position_ids.device)
if inputs_embeds is None:
inputs_embeds, inputs_embeds_scaling_factor = self.word_embeddings(input_ids)
else:
inputs_embeds_scaling_factor = None
token_type_embeddings, token_type_embeddings_scaling_factor = self.token_type_embeddings(token_type_ids)
embeddings, embeddings_scaling_factor = self.embeddings_act1(
inputs_embeds,
inputs_embeds_scaling_factor,
identity=token_type_embeddings,
identity_scaling_factor=token_type_embeddings_scaling_factor,
)
if self.position_embedding_type == "absolute":
position_embeddings, position_embeddings_scaling_factor = self.position_embeddings(position_ids)
embeddings, embeddings_scaling_factor = self.embeddings_act1(
embeddings,
embeddings_scaling_factor,
identity=position_embeddings,
identity_scaling_factor=position_embeddings_scaling_factor,
)
embeddings, embeddings_scaling_factor = self.LayerNorm(embeddings, embeddings_scaling_factor)
embeddings = self.dropout(embeddings)
embeddings, embeddings_scaling_factor = self.output_activation(embeddings, embeddings_scaling_factor)
return embeddings, embeddings_scaling_factor
def create_position_ids_from_inputs_embeds(self, inputs_embeds):
"""
We are provided embeddings directly. We cannot infer which are padded so just generate sequential position ids.
Args:
inputs_embeds: torch.Tensor
Returns: torch.Tensor
"""
input_shape = inputs_embeds.size()[:-1]
sequence_length = input_shape[1]
position_ids = torch.arange(
self.padding_idx + 1, sequence_length + self.padding_idx + 1, dtype=torch.long, device=inputs_embeds.device
)
return position_ids.unsqueeze(0).expand(input_shape)
class IBertSelfAttention(nn.Module):
def __init__(self, config):
super().__init__()
if config.hidden_size % config.num_attention_heads != 0 and not hasattr(config, "embedding_size"):
raise ValueError(
"The hidden size (%d) is not a multiple of the number of attention "
"heads (%d)" % (config.hidden_size, config.num_attention_heads)
)
self.quant_mode = config.quant_mode
self.weight_bit = 8
self.bias_bit = 32
self.act_bit = 8
self.num_attention_heads = config.num_attention_heads
self.attention_head_size = int(config.hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
# Q, K, V Linear layers
self.query = QuantLinear(
config.hidden_size,
self.all_head_size,
bias=True,
weight_bit=self.weight_bit,
bias_bit=self.bias_bit,
quant_mode=self.quant_mode,
per_channel=True,
)
self.key = QuantLinear(
config.hidden_size,
self.all_head_size,
bias=True,
weight_bit=self.weight_bit,
bias_bit=self.bias_bit,
quant_mode=self.quant_mode,
per_channel=True,
)
self.value = QuantLinear(
config.hidden_size,
self.all_head_size,
bias=True,
weight_bit=self.weight_bit,
bias_bit=self.bias_bit,
quant_mode=self.quant_mode,
per_channel=True,
)
# Requantization (32bit -> 8bit) for Q, K, V activations
self.query_activation = QuantAct(self.act_bit, quant_mode=self.quant_mode)
self.key_activation = QuantAct(self.act_bit, quant_mode=self.quant_mode)
self.value_activation = QuantAct(self.act_bit, quant_mode=self.quant_mode)
self.output_activation = QuantAct(self.act_bit, quant_mode=self.quant_mode)
self.dropout = nn.Dropout(config.attention_probs_dropout_prob)
self.position_embedding_type = getattr(config, "position_embedding_type", "absolute")
assert (
self.position_embedding_type == "absolute"
), "I-BERT only supports 'absolute' for `config.position_embedding_type`"
self.softmax = IntSoftmax(self.act_bit, quant_mode=self.quant_mode, force_dequant=config.force_dequant)
def transpose_for_scores(self, x):
new_x_shape = x.size()[:-1] + (self.num_attention_heads, self.attention_head_size)
x = x.view(*new_x_shape)
return x.permute(0, 2, 1, 3)
def forward(
self,
hidden_states,
hidden_states_scaling_factor,
attention_mask=None,
head_mask=None,
output_attentions=False,
):
# Projection
mixed_query_layer, mixed_query_layer_scaling_factor = self.query(hidden_states, hidden_states_scaling_factor)
mixed_key_layer, mixed_key_layer_scaling_factor = self.key(hidden_states, hidden_states_scaling_factor)
mixed_value_layer, mixed_value_layer_scaling_factor = self.value(hidden_states, hidden_states_scaling_factor)
# Requantization
query_layer, query_layer_scaling_factor = self.query_activation(
mixed_query_layer, mixed_query_layer_scaling_factor
)
key_layer, key_layer_scaling_factor = self.key_activation(mixed_key_layer, mixed_key_layer_scaling_factor)
value_layer, value_layer_scaling_factor = self.value_activation(
mixed_value_layer, mixed_value_layer_scaling_factor
)
# Transpose
query_layer = self.transpose_for_scores(query_layer)
key_layer = self.transpose_for_scores(key_layer)
value_layer = self.transpose_for_scores(value_layer)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = torch.matmul(query_layer, key_layer.transpose(-1, -2))
scale = math.sqrt(self.attention_head_size)
attention_scores = attention_scores / scale
if self.quant_mode:
attention_scores_scaling_factor = query_layer_scaling_factor * key_layer_scaling_factor / scale
else:
attention_scores_scaling_factor = None
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in IBertModel forward() function)
attention_scores = attention_scores + attention_mask
# Normalize the attention scores to probabilities.
attention_probs, attention_probs_scaling_factor = self.softmax(
attention_scores, attention_scores_scaling_factor
)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = torch.matmul(attention_probs, value_layer)
if attention_probs_scaling_factor is not None:
context_layer_scaling_factor = attention_probs_scaling_factor * value_layer_scaling_factor
else:
context_layer_scaling_factor = None
context_layer = context_layer.permute(0, 2, 1, 3).contiguous()
new_context_layer_shape = context_layer.size()[:-2] + (self.all_head_size,)
context_layer = context_layer.view(*new_context_layer_shape)
# requantization: 32-bit -> 8-bit
context_layer, context_layer_scaling_factor = self.output_activation(
context_layer, context_layer_scaling_factor
)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
output_scaling_factor = (
(context_layer_scaling_factor, attention_probs_scaling_factor)
if output_attentions
else (context_layer_scaling_factor,)
)
return outputs, output_scaling_factor
class IBertSelfOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.quant_mode = config.quant_mode
self.act_bit = 8
self.weight_bit = 8
self.bias_bit = 32
self.ln_input_bit = 22
self.ln_output_bit = 32
self.dense = QuantLinear(
config.hidden_size,
config.hidden_size,
bias=True,
weight_bit=self.weight_bit,
bias_bit=self.bias_bit,
quant_mode=self.quant_mode,
per_channel=True,
)
self.ln_input_act = QuantAct(self.ln_input_bit, quant_mode=self.quant_mode)
self.LayerNorm = IntLayerNorm(
config.hidden_size,
eps=config.layer_norm_eps,
output_bit=self.ln_output_bit,
quant_mode=self.quant_mode,
force_dequant=config.force_dequant,
)
self.output_activation = QuantAct(self.act_bit, quant_mode=self.quant_mode)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states, hidden_states_scaling_factor, input_tensor, input_tensor_scaling_factor):
hidden_states, hidden_states_scaling_factor = self.dense(hidden_states, hidden_states_scaling_factor)
hidden_states = self.dropout(hidden_states)
hidden_states, hidden_states_scaling_factor = self.ln_input_act(
hidden_states,
hidden_states_scaling_factor,
identity=input_tensor,
identity_scaling_factor=input_tensor_scaling_factor,
)
hidden_states, hidden_states_scaling_factor = self.LayerNorm(hidden_states, hidden_states_scaling_factor)
hidden_states, hidden_states_scaling_factor = self.output_activation(
hidden_states, hidden_states_scaling_factor
)
return hidden_states, hidden_states_scaling_factor
class IBertAttention(nn.Module):
def __init__(self, config):
super().__init__()
self.quant_mode = config.quant_mode
self.self = IBertSelfAttention(config)
self.output = IBertSelfOutput(config)
self.pruned_heads = set()
def prune_heads(self, heads):
if len(heads) == 0:
return
heads, index = find_pruneable_heads_and_indices(
heads, self.self.num_attention_heads, self.self.attention_head_size, self.pruned_heads
)
# Prune linear layers
self.self.query = prune_linear_layer(self.self.query, index)
self.self.key = prune_linear_layer(self.self.key, index)
self.self.value = prune_linear_layer(self.self.value, index)
self.output.dense = prune_linear_layer(self.output.dense, index, dim=1)
# Update hyper params and store pruned heads
self.self.num_attention_heads = self.self.num_attention_heads - len(heads)
self.self.all_head_size = self.self.attention_head_size * self.self.num_attention_heads
self.pruned_heads = self.pruned_heads.union(heads)
def forward(
self,
hidden_states,
hidden_states_scaling_factor,
attention_mask=None,
head_mask=None,
output_attentions=False,
):
self_outputs, self_outputs_scaling_factor = self.self(
hidden_states,
hidden_states_scaling_factor,
attention_mask,
head_mask,
output_attentions,
)
attention_output, attention_output_scaling_factor = self.output(
self_outputs[0], self_outputs_scaling_factor[0], hidden_states, hidden_states_scaling_factor
)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
outputs_scaling_factor = (attention_output_scaling_factor,) + self_outputs_scaling_factor[1:]
return outputs, outputs_scaling_factor
class IBertIntermediate(nn.Module):
def __init__(self, config):
super().__init__()
self.quant_mode = config.quant_mode
self.act_bit = 8
self.weight_bit = 8
self.bias_bit = 32
self.dense = QuantLinear(
config.hidden_size,
config.intermediate_size,
bias=True,
weight_bit=self.weight_bit,
bias_bit=self.bias_bit,
quant_mode=self.quant_mode,
per_channel=True,
)
assert config.hidden_act == "gelu", "I-BERT only supports 'gelu' for `config.hidden_act`"
self.intermediate_act_fn = IntGELU(quant_mode=self.quant_mode, force_dequant=config.force_dequant)
self.output_activation = QuantAct(self.act_bit, quant_mode=self.quant_mode)
def forward(self, hidden_states, hidden_states_scaling_factor):
hidden_states, hidden_states_scaling_factor = self.dense(hidden_states, hidden_states_scaling_factor)
hidden_states, hidden_states_scaling_factor = self.intermediate_act_fn(
hidden_states, hidden_states_scaling_factor
)
# Requantization: 32bit -> 8-bit
hidden_states, hidden_states_scaling_factor = self.output_activation(
hidden_states, hidden_states_scaling_factor
)
return hidden_states, hidden_states_scaling_factor
class IBertOutput(nn.Module):
def __init__(self, config):
super().__init__()
self.quant_mode = config.quant_mode
self.act_bit = 8
self.weight_bit = 8
self.bias_bit = 32
self.ln_input_bit = 22
self.ln_output_bit = 32
self.dense = QuantLinear(
config.intermediate_size,
config.hidden_size,
bias=True,
weight_bit=self.weight_bit,
bias_bit=self.bias_bit,
quant_mode=self.quant_mode,
per_channel=True,
)
self.ln_input_act = QuantAct(self.ln_input_bit, quant_mode=self.quant_mode)
self.LayerNorm = IntLayerNorm(
config.hidden_size,
eps=config.layer_norm_eps,
output_bit=self.ln_output_bit,
quant_mode=self.quant_mode,
force_dequant=config.force_dequant,
)
self.output_activation = QuantAct(self.act_bit, quant_mode=self.quant_mode)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
def forward(self, hidden_states, hidden_states_scaling_factor, input_tensor, input_tensor_scaling_factor):
hidden_states, hidden_states_scaling_factor = self.dense(hidden_states, hidden_states_scaling_factor)
hidden_states = self.dropout(hidden_states)
hidden_states, hidden_states_scaling_factor = self.ln_input_act(
hidden_states,
hidden_states_scaling_factor,
identity=input_tensor,
identity_scaling_factor=input_tensor_scaling_factor,
)
hidden_states, hidden_states_scaling_factor = self.LayerNorm(hidden_states, hidden_states_scaling_factor)
hidden_states, hidden_states_scaling_factor = self.output_activation(
hidden_states, hidden_states_scaling_factor
)
return hidden_states, hidden_states_scaling_factor
class IBertLayer(nn.Module):
def __init__(self, config):
super().__init__()
self.quant_mode = config.quant_mode
self.act_bit = 8
self.seq_len_dim = 1
self.attention = IBertAttention(config)
self.intermediate = IBertIntermediate(config)
self.output = IBertOutput(config)
self.pre_intermediate_act = QuantAct(self.act_bit, quant_mode=self.quant_mode)
self.pre_output_act = QuantAct(self.act_bit, quant_mode=self.quant_mode)
def forward(
self,
hidden_states,
hidden_states_scaling_factor,
attention_mask=None,
head_mask=None,
output_attentions=False,
):
self_attention_outputs, self_attention_outputs_scaling_factor = self.attention(
hidden_states,
hidden_states_scaling_factor,
attention_mask,
head_mask,
output_attentions=output_attentions,
)
attention_output = self_attention_outputs[0]
attention_output_scaling_factor = self_attention_outputs_scaling_factor[0]
outputs = self_attention_outputs[1:] # add self attentions if we output attention weights
layer_output, layer_output_scaling_factor = self.feed_forward_chunk(
attention_output, attention_output_scaling_factor
)
outputs = (layer_output,) + outputs
return outputs
def feed_forward_chunk(self, attention_output, attention_output_scaling_factor):
attention_output, attention_output_scaling_factor = self.pre_intermediate_act(
attention_output, attention_output_scaling_factor
)
intermediate_output, intermediate_output_scaling_factor = self.intermediate(
attention_output, attention_output_scaling_factor
)
intermediate_output, intermediate_output_scaling_factor = self.pre_output_act(
intermediate_output, intermediate_output_scaling_factor
)
layer_output, layer_output_scaling_factor = self.output(
intermediate_output, intermediate_output_scaling_factor, attention_output, attention_output_scaling_factor
)
return layer_output, layer_output_scaling_factor
class IBertEncoder(nn.Module):
def __init__(self, config):
super().__init__()
self.config = config
self.quant_mode = config.quant_mode
self.layer = nn.ModuleList([IBertLayer(config) for _ in range(config.num_hidden_layers)])
def forward(
self,
hidden_states,
hidden_states_scaling_factor,
attention_mask=None,
head_mask=None,
output_attentions=False,
output_hidden_states=False,
return_dict=True,
):
all_hidden_states = () if output_hidden_states else None
all_self_attentions = () if output_attentions else None
all_cross_attentions = None # `config.add_cross_attention` is not supported
next_decoder_cache = None # `config.use_cache` is not supported
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_head_mask = head_mask[i] if head_mask is not None else None
if getattr(self.config, "gradient_checkpointing", False) and self.training:
raise NotImplementedError("gradient checkpointing is not currently supported")
else:
layer_outputs = layer_module(
hidden_states,
hidden_states_scaling_factor,
attention_mask,
layer_head_mask,
output_attentions,
)
hidden_states = layer_outputs[0]
if output_attentions:
all_self_attentions = all_self_attentions + (layer_outputs[1],)
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(
v
for v in [
hidden_states,
next_decoder_cache,
all_hidden_states,
all_self_attentions,
all_cross_attentions,
]
if v is not None
)
return BaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
past_key_values=next_decoder_cache,
hidden_states=all_hidden_states,
attentions=all_self_attentions,
cross_attentions=all_cross_attentions,
)
class IBertPooler(nn.Module):
def __init__(self, config):
super().__init__()
self.quant_mode = config.quant_mode
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.activation = nn.Tanh()
def forward(self, hidden_states):
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(first_token_tensor)
pooled_output = self.activation(pooled_output)
return pooled_output
class IBertPreTrainedModel(PreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = IBertConfig
base_model_prefix = "ibert"
def _init_weights(self, module):
""" Initialize the weights """
if isinstance(module, (QuantLinear, nn.Linear)):
# Slightly different from the TF version which uses truncated_normal for initialization
# cf https://github.com/pytorch/pytorch/pull/5617
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.bias is not None:
module.bias.data.zero_()
elif isinstance(module, (QuantEmbedding, nn.Embedding)):
module.weight.data.normal_(mean=0.0, std=self.config.initializer_range)
if module.padding_idx is not None:
module.weight.data[module.padding_idx].zero_()
elif isinstance(module, (IntLayerNorm, nn.LayerNorm)):
module.bias.data.zero_()
module.weight.data.fill_(1.0)
def resize_token_embeddings(self, new_num_tokens=None):
raise NotImplementedError("`resize_token_embeddings` is not supported for I-BERT.")
IBERT_START_DOCSTRING = r"""
This model inherits from :class:`~transformers.PreTrainedModel`. Check the superclass documentation for the generic
methods the library implements for all its model (such as downloading or saving, resizing the input embeddings,
pruning heads etc.)
This model is also a PyTorch `torch.nn.Module <https://pytorch.org/docs/stable/nn.html#torch.nn.Module>`__
subclass. Use it as a regular PyTorch Module and refer to the PyTorch documentation for all matter related to
general usage and behavior.
Parameters:
config (:class:`~transformers.IBertConfig`): Model configuration class with all the parameters of the
model. Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the :meth:`~transformers.PreTrainedModel.from_pretrained` method to load the model
weights.
"""
IBERT_INPUTS_DOCSTRING = r"""
Args:
input_ids (:obj:`torch.LongTensor` of shape :obj:`({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using :class:`~transformers.RobertaTokenizer`. See
:meth:`transformers.PreTrainedTokenizer.encode` and :meth:`transformers.PreTrainedTokenizer.__call__` for
details.
`What are input IDs? <../glossary.html#input-ids>`__
attention_mask (:obj:`torch.FloatTensor` of shape :obj:`({0})`, `optional`):
Mask to avoid performing attention on padding token indices. Mask values selected in ``[0, 1]``:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
`What are attention masks? <../glossary.html#attention-mask>`__
token_type_ids (:obj:`torch.LongTensor` of shape :obj:`({0})`, `optional`):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in ``[0,
1]``:
- 0 corresponds to a `sentence A` token,
- 1 corresponds to a `sentence B` token.
`What are token type IDs? <../glossary.html#token-type-ids>`_
position_ids (:obj:`torch.LongTensor` of shape :obj:`({0})`, `optional`):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range ``[0,
config.max_position_embeddings - 1]``.
`What are position IDs? <../glossary.html#position-ids>`_
head_mask (:obj:`torch.FloatTensor` of shape :obj:`(num_heads,)` or :obj:`(num_layers, num_heads)`, `optional`):
Mask to nullify selected heads of the self-attention modules. Mask values selected in ``[0, 1]``:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (:obj:`torch.FloatTensor` of shape :obj:`({0}, hidden_size)`, `optional`):
Optionally, instead of passing :obj:`input_ids` you can choose to directly pass an embedded representation.
This is useful if you want more control over how to convert :obj:`input_ids` indices into associated
vectors than the model's internal embedding lookup matrix.
output_attentions (:obj:`bool`, `optional`):
Whether or not to return the attentions tensors of all attention layers. See ``attentions`` under returned
tensors for more detail.
output_hidden_states (:obj:`bool`, `optional`):
Whether or not to return the hidden states of all layers. See ``hidden_states`` under returned tensors for
more detail.
return_dict (:obj:`bool`, `optional`):
Whether or not to return a :class:`~transformers.file_utils.ModelOutput` instead of a plain tuple.
"""
@add_start_docstrings(
"The bare I-BERT Model transformer outputting raw hidden-states without any specific head on top.",
IBERT_START_DOCSTRING,
)
class IBertModel(IBertPreTrainedModel):
"""
The model can behave as an encoder (with only self-attention) as well as a decoder, in which case a layer of
cross-attention is added between the self-attention layers, following the architecture described in `Attention is
all you need <https://arxiv.org/abs/1706.03762>`__ by Ashish Vaswani, Noam Shazeer, Niki Parmar, Jakob Uszkoreit,
Llion Jones, Aidan N. Gomez, Lukasz Kaiser and Illia Polosukhin.
"""
_keys_to_ignore_on_load_missing = [r"position_ids"]
def __init__(self, config, add_pooling_layer=True):
super().__init__(config)
self.config = config
self.quant_mode = config.quant_mode
self.embeddings = IBertEmbeddings(config)
self.encoder = IBertEncoder(config)
self.pooler = IBertPooler(config) if add_pooling_layer else None
self.init_weights()
def get_input_embeddings(self):
return self.embeddings.word_embeddings
def set_input_embeddings(self, value):
self.embeddings.word_embeddings = value
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
for layer, heads in heads_to_prune.items():
self.encoder.layer[layer].attention.prune_heads(heads)
@add_start_docstrings_to_model_forward(IBERT_INPUTS_DOCSTRING.format("(batch_size, sequence_length)"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=BaseModelOutputWithPoolingAndCrossAttentions,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
if input_ids is not None and inputs_embeds is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif input_ids is not None:
input_shape = input_ids.size()
batch_size, seq_length = input_shape
elif inputs_embeds is not None:
input_shape = inputs_embeds.size()[:-1]
batch_size, seq_length = input_shape
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
device = input_ids.device if input_ids is not None else inputs_embeds.device
if attention_mask is None:
attention_mask = torch.ones(((batch_size, seq_length)), device=device)
if token_type_ids is None:
token_type_ids = torch.zeros(input_shape, dtype=torch.long, device=device)
# We can provide a self-attention mask of dimensions [batch_size, from_seq_length, to_seq_length]
# ourselves in which case we just need to make it broadcastable to all heads.
extended_attention_mask: torch.Tensor = self.get_extended_attention_mask(attention_mask, input_shape, device)
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
head_mask = self.get_head_mask(head_mask, self.config.num_hidden_layers)
embedding_output, embedding_output_scaling_factor = self.embeddings(
input_ids=input_ids,
position_ids=position_ids,
token_type_ids=token_type_ids,
inputs_embeds=inputs_embeds,
)
encoder_outputs = self.encoder(
embedding_output,
embedding_output_scaling_factor,
attention_mask=extended_attention_mask,
head_mask=head_mask,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = encoder_outputs[0]
pooled_output = self.pooler(sequence_output) if self.pooler is not None else None
if not return_dict:
return (sequence_output, pooled_output) + encoder_outputs[1:]
return BaseModelOutputWithPoolingAndCrossAttentions(
last_hidden_state=sequence_output,
pooler_output=pooled_output,
past_key_values=encoder_outputs.past_key_values,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
cross_attentions=encoder_outputs.cross_attentions,
)
@add_start_docstrings("""I-BERT Model with a `language modeling` head on top. """, IBERT_START_DOCSTRING)
class IBertForMaskedLM(IBertPreTrainedModel):
_keys_to_ignore_on_load_missing = [r"position_ids", r"lm_head.decoder.bias"]
_keys_to_ignore_on_load_unexpected = [r"pooler"]
def __init__(self, config):
super().__init__(config)
self.ibert = IBertModel(config, add_pooling_layer=False)
self.lm_head = IBertLMHead(config)
self.init_weights()
def get_output_embeddings(self):
return self.lm_head.decoder
def set_output_embeddings(self, new_embeddings):
self.lm_head.decoder = new_embeddings
@add_start_docstrings_to_model_forward(IBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=MaskedLMOutput,
config_class=_CONFIG_FOR_DOC,
mask="<mask>",
)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
labels=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
r"""
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Labels for computing the masked language modeling loss. Indices should be in ``[-100, 0, ...,
config.vocab_size]`` (see ``input_ids`` docstring) Tokens with indices set to ``-100`` are ignored
(masked), the loss is only computed for the tokens with labels in ``[0, ..., config.vocab_size]``
kwargs (:obj:`Dict[str, any]`, optional, defaults to `{}`):
Used to hide legacy arguments that have been deprecated.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.ibert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
prediction_scores = self.lm_head(sequence_output)
masked_lm_loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
masked_lm_loss = loss_fct(prediction_scores.view(-1, self.config.vocab_size), labels.view(-1))
if not return_dict:
output = (prediction_scores,) + outputs[2:]
return ((masked_lm_loss,) + output) if masked_lm_loss is not None else output
return MaskedLMOutput(
loss=masked_lm_loss,
logits=prediction_scores,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
class IBertLMHead(nn.Module):
"""I-BERT Head for masked language modeling."""
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.layer_norm = nn.LayerNorm(config.hidden_size, eps=config.layer_norm_eps)
self.decoder = nn.Linear(config.hidden_size, config.vocab_size, bias=False)
self.bias = nn.Parameter(torch.zeros(config.vocab_size))
# Need a link between the two variables so that the bias is correctly resized with `resize_token_embeddings`
self.decoder.bias = self.bias
def forward(self, features, **kwargs):
x = self.dense(features)
x = gelu(x)
x = self.layer_norm(x)
# project back to size of vocabulary with bias
x = self.decoder(x)
return x
@add_start_docstrings(
"""
I-BERT Model transformer with a sequence classification/regression head on top (a linear layer on top of the pooled
output) e.g. for GLUE tasks.
""",
IBERT_START_DOCSTRING,
)
class IBertForSequenceClassification(IBertPreTrainedModel):
_keys_to_ignore_on_load_missing = [r"position_ids"]
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.ibert = IBertModel(config, add_pooling_layer=False)
self.classifier = IBertClassificationHead(config)
self.init_weights()
@add_start_docstrings_to_model_forward(IBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=SequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
labels=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
r"""
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for computing the sequence classification/regression loss. Indices should be in :obj:`[0, ...,
config.num_labels - 1]`. If :obj:`config.num_labels == 1` a regression loss is computed (Mean-Square loss),
If :obj:`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.ibert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
logits = self.classifier(sequence_output)
loss = None
if labels is not None:
if self.num_labels == 1:
# We are doing regression
loss_fct = MSELoss()
loss = loss_fct(logits.view(-1), labels.view(-1))
else:
loss_fct = CrossEntropyLoss()
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return SequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
I-BERT Model with a multiple choice classification head on top (a linear layer on top of the pooled output and a
softmax) e.g. for RocStories/SWAG tasks.
""",
IBERT_START_DOCSTRING,
)
class IBertForMultipleChoice(IBertPreTrainedModel):
_keys_to_ignore_on_load_missing = [r"position_ids"]
def __init__(self, config):
super().__init__(config)
self.ibert = IBertModel(config)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, 1)
self.init_weights()
@add_start_docstrings_to_model_forward(IBERT_INPUTS_DOCSTRING.format("batch_size, num_choices, sequence_length"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=MultipleChoiceModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids=None,
token_type_ids=None,
attention_mask=None,
labels=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
r"""
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for computing the multiple choice classification loss. Indices should be in ``[0, ...,
num_choices-1]`` where :obj:`num_choices` is the size of the second dimension of the input tensors. (See
:obj:`input_ids` above)
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
num_choices = input_ids.shape[1] if input_ids is not None else inputs_embeds.shape[1]
flat_input_ids = input_ids.view(-1, input_ids.size(-1)) if input_ids is not None else None
flat_position_ids = position_ids.view(-1, position_ids.size(-1)) if position_ids is not None else None
flat_token_type_ids = token_type_ids.view(-1, token_type_ids.size(-1)) if token_type_ids is not None else None
flat_attention_mask = attention_mask.view(-1, attention_mask.size(-1)) if attention_mask is not None else None
flat_inputs_embeds = (
inputs_embeds.view(-1, inputs_embeds.size(-2), inputs_embeds.size(-1))
if inputs_embeds is not None
else None
)
outputs = self.ibert(
flat_input_ids,
position_ids=flat_position_ids,
token_type_ids=flat_token_type_ids,
attention_mask=flat_attention_mask,
head_mask=head_mask,
inputs_embeds=flat_inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
pooled_output = outputs[1]
pooled_output = self.dropout(pooled_output)
logits = self.classifier(pooled_output)
reshaped_logits = logits.view(-1, num_choices)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
loss = loss_fct(reshaped_logits, labels)
if not return_dict:
output = (reshaped_logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return MultipleChoiceModelOutput(
loss=loss,
logits=reshaped_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
I-BERT Model with a token classification head on top (a linear layer on top of the hidden-states output) e.g. for
Named-Entity-Recognition (NER) tasks.
""",
IBERT_START_DOCSTRING,
)
class IBertForTokenClassification(IBertPreTrainedModel):
_keys_to_ignore_on_load_unexpected = [r"pooler"]
_keys_to_ignore_on_load_missing = [r"position_ids"]
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.ibert = IBertModel(config, add_pooling_layer=False)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.classifier = nn.Linear(config.hidden_size, config.num_labels)
self.init_weights()
@add_start_docstrings_to_model_forward(IBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TokenClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
labels=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
r"""
labels (:obj:`torch.LongTensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Labels for computing the token classification loss. Indices should be in ``[0, ..., config.num_labels -
1]``.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.ibert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
sequence_output = self.dropout(sequence_output)
logits = self.classifier(sequence_output)
loss = None
if labels is not None:
loss_fct = CrossEntropyLoss()
# Only keep active parts of the loss
if attention_mask is not None:
active_loss = attention_mask.view(-1) == 1
active_logits = logits.view(-1, self.num_labels)
active_labels = torch.where(
active_loss, labels.view(-1), torch.tensor(loss_fct.ignore_index).type_as(labels)
)
loss = loss_fct(active_logits, active_labels)
else:
loss = loss_fct(logits.view(-1, self.num_labels), labels.view(-1))
if not return_dict:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TokenClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
class IBertClassificationHead(nn.Module):
"""Head for sentence-level classification tasks."""
def __init__(self, config):
super().__init__()
self.dense = nn.Linear(config.hidden_size, config.hidden_size)
self.dropout = nn.Dropout(config.hidden_dropout_prob)
self.out_proj = nn.Linear(config.hidden_size, config.num_labels)
def forward(self, features, **kwargs):
hidden_states = features[:, 0, :] # take <s> token (equiv. to [CLS])
hidden_states = self.dropout(hidden_states)
hidden_states = self.dense(hidden_states)
hidden_states = torch.tanh(hidden_states)
hidden_states = self.dropout(hidden_states)
hidden_states = self.out_proj(hidden_states)
return hidden_states
@add_start_docstrings(
"""
I-BERT Model with a span classification head on top for extractive question-answering tasks like SQuAD (a linear
layers on top of the hidden-states output to compute `span start logits` and `span end logits`).
""",
IBERT_START_DOCSTRING,
)
class IBertForQuestionAnswering(IBertPreTrainedModel):
_keys_to_ignore_on_load_unexpected = [r"pooler"]
_keys_to_ignore_on_load_missing = [r"position_ids"]
def __init__(self, config):
super().__init__(config)
self.num_labels = config.num_labels
self.ibert = IBertModel(config, add_pooling_layer=False)
self.qa_outputs = nn.Linear(config.hidden_size, config.num_labels)
self.init_weights()
@add_start_docstrings_to_model_forward(IBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=QuestionAnsweringModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def forward(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
start_positions=None,
end_positions=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
):
r"""
start_positions (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for position (index) of the start of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (:obj:`sequence_length`). Position outside of the
sequence are not taken into account for computing the loss.
end_positions (:obj:`torch.LongTensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for position (index) of the end of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (:obj:`sequence_length`). Position outside of the
sequence are not taken into account for computing the loss.
"""
return_dict = return_dict if return_dict is not None else self.config.use_return_dict
outputs = self.ibert(
input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
sequence_output = outputs[0]
logits = self.qa_outputs(sequence_output)
start_logits, end_logits = logits.split(1, dim=-1)
start_logits = start_logits.squeeze(-1)
end_logits = end_logits.squeeze(-1)
total_loss = None
if start_positions is not None and end_positions is not None:
# If we are on multi-GPU, split add a dimension
if len(start_positions.size()) > 1:
start_positions = start_positions.squeeze(-1)
if len(end_positions.size()) > 1:
end_positions = end_positions.squeeze(-1)
# sometimes the start/end positions are outside our model inputs, we ignore these terms
ignored_index = start_logits.size(1)
start_positions.clamp_(0, ignored_index)
end_positions.clamp_(0, ignored_index)
loss_fct = CrossEntropyLoss(ignore_index=ignored_index)
start_loss = loss_fct(start_logits, start_positions)
end_loss = loss_fct(end_logits, end_positions)
total_loss = (start_loss + end_loss) / 2
if not return_dict:
output = (start_logits, end_logits) + outputs[2:]
return ((total_loss,) + output) if total_loss is not None else output
return QuestionAnsweringModelOutput(
loss=total_loss,
start_logits=start_logits,
end_logits=end_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def create_position_ids_from_input_ids(input_ids, padding_idx, past_key_values_length=0):
"""
Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding symbols
are ignored. This is modified from fairseq's `utils.make_positions`.
Args:
input_ids (:obj:`torch.LongTensor`):
Indices of input sequence tokens in the vocabulary.
Returns: torch.Tensor
"""
# The series of casts and type-conversions here are carefully balanced to both work with ONNX export and XLA.
mask = input_ids.ne(padding_idx).int()
incremental_indices = (torch.cumsum(mask, dim=1).type_as(mask) + past_key_values_length) * mask
return incremental_indices.long() + padding_idx
|
AdaMix/src/transformers/models/ibert/modeling_ibert.py/0
|
{
"file_path": "AdaMix/src/transformers/models/ibert/modeling_ibert.py",
"repo_id": "AdaMix",
"token_count": 24187
}
| 55 |
# coding=utf-8
# Copyright 2020 The Allen Institute for AI team and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Tensorflow Longformer model. """
import warnings
from dataclasses import dataclass
from typing import Optional, Tuple
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...file_utils import (
MULTIPLE_CHOICE_DUMMY_INPUTS,
ModelOutput,
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
)
from ...modeling_tf_utils import (
TFMaskedLanguageModelingLoss,
TFMultipleChoiceLoss,
TFPreTrainedModel,
TFQuestionAnsweringLoss,
TFSequenceClassificationLoss,
TFTokenClassificationLoss,
get_initializer,
input_processing,
keras_serializable,
shape_list,
)
from ...utils import logging
from .configuration_longformer import LongformerConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "allenai/longformer-base-4096"
_CONFIG_FOR_DOC = "LongformerConfig"
_TOKENIZER_FOR_DOC = "LongformerTokenizer"
TF_LONGFORMER_PRETRAINED_MODEL_ARCHIVE_LIST = [
"allenai/longformer-base-4096",
"allenai/longformer-large-4096",
"allenai/longformer-large-4096-finetuned-triviaqa",
"allenai/longformer-base-4096-extra.pos.embd.only",
"allenai/longformer-large-4096-extra.pos.embd.only",
# See all Longformer models at https://huggingface.co/models?filter=longformer
]
@dataclass
class TFLongformerBaseModelOutput(ModelOutput):
"""
Base class for Longformer's outputs, with potential hidden states, local and global attentions.
Args:
last_hidden_state (:obj:`tf.Tensor` of shape :obj:`(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
hidden_states (:obj:`tuple(tf.Tensor)`, `optional`, returned when ``output_hidden_states=True`` is passed or when ``config.output_hidden_states=True``):
Tuple of :obj:`tf.Tensor` (one for the output of the embeddings + one for the output of each layer) of
shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(tf.Tensor)`, `optional`, returned when ``output_attentions=True`` is passed or when ``config.output_attentions=True``):
Tuple of :obj:`tf.Tensor` (one for each layer) of shape :obj:`(batch_size, num_heads, sequence_length, x +
attention_window + 1)`, where ``x`` is the number of tokens with global attention mask.
Local attentions weights after the attention softmax, used to compute the weighted average in the
self-attention heads. Those are the attention weights from every token in the sequence to every token with
global attention (first ``x`` values) and to every token in the attention window (remaining
``attention_window + 1`` values). Note that the first ``x`` values refer to tokens with fixed positions in
the text, but the remaining ``attention_window + 1`` values refer to tokens with relative positions: the
attention weight of a token to itself is located at index ``x + attention_window / 2`` and the
``attention_window / 2`` preceding (succeeding) values are the attention weights to the ``attention_window
/ 2`` preceding (succeeding) tokens. If the attention window contains a token with global attention, the
attention weight at the corresponding index is set to 0; the value should be accessed from the first ``x``
attention weights. If a token has global attention, the attention weights to all other tokens in
:obj:`attentions` is set to 0, the values should be accessed from :obj:`global_attentions`.
global_attentions (:obj:`tuple(tf.Tensor)`, `optional`, returned when ``output_attentions=True`` is passed or when ``config.output_attentions=True``):
Tuple of :obj:`tf.Tensor` (one for each layer) of shape :obj:`(batch_size, num_heads, sequence_length, x)`,
where ``x`` is the number of tokens with global attention mask.
Global attentions weights after the attention softmax, used to compute the weighted average in the
self-attention heads. Those are the attention weights from every token with global attention to every token
in the sequence.
"""
last_hidden_state: tf.Tensor = None
hidden_states: Optional[Tuple[tf.Tensor]] = None
attentions: Optional[Tuple[tf.Tensor]] = None
global_attentions: Optional[Tuple[tf.Tensor]] = None
@dataclass
class TFLongformerBaseModelOutputWithPooling(ModelOutput):
"""
Base class for Longformer's outputs that also contains a pooling of the last hidden states.
Args:
last_hidden_state (:obj:`tf.Tensor` of shape :obj:`(batch_size, sequence_length, hidden_size)`):
Sequence of hidden-states at the output of the last layer of the model.
pooler_output (:obj:`tf.Tensor` of shape :obj:`(batch_size, hidden_size)`):
Last layer hidden-state of the first token of the sequence (classification token) further processed by a
Linear layer and a Tanh activation function. The Linear layer weights are trained from the next sentence
prediction (classification) objective during pretraining.
hidden_states (:obj:`tuple(tf.Tensor)`, `optional`, returned when ``output_hidden_states=True`` is passed or when ``config.output_hidden_states=True``):
Tuple of :obj:`tf.Tensor` (one for the output of the embeddings + one for the output of each layer) of
shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(tf.Tensor)`, `optional`, returned when ``output_attentions=True`` is passed or when ``config.output_attentions=True``):
Tuple of :obj:`tf.Tensor` (one for each layer) of shape :obj:`(batch_size, num_heads, sequence_length, x +
attention_window + 1)`, where ``x`` is the number of tokens with global attention mask.
Local attentions weights after the attention softmax, used to compute the weighted average in the
self-attention heads. Those are the attention weights from every token in the sequence to every token with
global attention (first ``x`` values) and to every token in the attention window (remaining
``attention_window + 1`` values). Note that the first ``x`` values refer to tokens with fixed positions in
the text, but the remaining ``attention_window + 1`` values refer to tokens with relative positions: the
attention weight of a token to itself is located at index ``x + attention_window / 2`` and the
``attention_window / 2`` preceding (succeeding) values are the attention weights to the ``attention_window
/ 2`` preceding (succeeding) tokens. If the attention window contains a token with global attention, the
attention weight at the corresponding index is set to 0; the value should be accessed from the first ``x``
attention weights. If a token has global attention, the attention weights to all other tokens in
:obj:`attentions` is set to 0, the values should be accessed from :obj:`global_attentions`.
global_attentions (:obj:`tuple(tf.Tensor)`, `optional`, returned when ``output_attentions=True`` is passed or when ``config.output_attentions=True``):
Tuple of :obj:`tf.Tensor` (one for each layer) of shape :obj:`(batch_size, num_heads, sequence_length, x)`,
where ``x`` is the number of tokens with global attention mask.
Global attentions weights after the attention softmax, used to compute the weighted average in the
self-attention heads. Those are the attention weights from every token with global attention to every token
in the sequence.
"""
last_hidden_state: tf.Tensor = None
pooler_output: tf.Tensor = None
hidden_states: Optional[Tuple[tf.Tensor]] = None
attentions: Optional[Tuple[tf.Tensor]] = None
global_attentions: Optional[Tuple[tf.Tensor]] = None
@dataclass
class TFLongformerMaskedLMOutput(ModelOutput):
"""
Base class for masked language models outputs.
Args:
loss (:obj:`tf.Tensor` of shape :obj:`(1,)`, `optional`, returned when :obj:`labels` is provided):
Masked language modeling (MLM) loss.
logits (:obj:`tf.Tensor` of shape :obj:`(batch_size, sequence_length, config.vocab_size)`):
Prediction scores of the language modeling head (scores for each vocabulary token before SoftMax).
hidden_states (:obj:`tuple(tf.Tensor)`, `optional`, returned when ``output_hidden_states=True`` is passed or when ``config.output_hidden_states=True``):
Tuple of :obj:`tf.Tensor` (one for the output of the embeddings + one for the output of each layer) of
shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(tf.Tensor)`, `optional`, returned when ``output_attentions=True`` is passed or when ``config.output_attentions=True``):
Tuple of :obj:`tf.Tensor` (one for each layer) of shape :obj:`(batch_size, num_heads, sequence_length, x +
attention_window + 1)`, where ``x`` is the number of tokens with global attention mask.
Local attentions weights after the attention softmax, used to compute the weighted average in the
self-attention heads. Those are the attention weights from every token in the sequence to every token with
global attention (first ``x`` values) and to every token in the attention window (remaining
``attention_window + 1`` values). Note that the first ``x`` values refer to tokens with fixed positions in
the text, but the remaining ``attention_window + 1`` values refer to tokens with relative positions: the
attention weight of a token to itself is located at index ``x + attention_window / 2`` and the
``attention_window / 2`` preceding (succeeding) values are the attention weights to the ``attention_window
/ 2`` preceding (succeeding) tokens. If the attention window contains a token with global attention, the
attention weight at the corresponding index is set to 0; the value should be accessed from the first ``x``
attention weights. If a token has global attention, the attention weights to all other tokens in
:obj:`attentions` is set to 0, the values should be accessed from :obj:`global_attentions`.
global_attentions (:obj:`tuple(tf.Tensor)`, `optional`, returned when ``output_attentions=True`` is passed or when ``config.output_attentions=True``):
Tuple of :obj:`tf.Tensor` (one for each layer) of shape :obj:`(batch_size, num_heads, sequence_length, x)`,
where ``x`` is the number of tokens with global attention mask.
Global attentions weights after the attention softmax, used to compute the weighted average in the
self-attention heads. Those are the attention weights from every token with global attention to every token
in the sequence.
"""
loss: Optional[tf.Tensor] = None
logits: tf.Tensor = None
hidden_states: Optional[Tuple[tf.Tensor]] = None
attentions: Optional[Tuple[tf.Tensor]] = None
global_attentions: Optional[Tuple[tf.Tensor]] = None
@dataclass
class TFLongformerQuestionAnsweringModelOutput(ModelOutput):
"""
Base class for outputs of question answering Longformer models.
Args:
loss (:obj:`tf.Tensor` of shape :obj:`(1,)`, `optional`, returned when :obj:`labels` is provided):
Total span extraction loss is the sum of a Cross-Entropy for the start and end positions.
start_logits (:obj:`tf.Tensor` of shape :obj:`(batch_size, sequence_length)`):
Span-start scores (before SoftMax).
end_logits (:obj:`tf.Tensor` of shape :obj:`(batch_size, sequence_length)`):
Span-end scores (before SoftMax).
hidden_states (:obj:`tuple(tf.Tensor)`, `optional`, returned when ``output_hidden_states=True`` is passed or when ``config.output_hidden_states=True``):
Tuple of :obj:`tf.Tensor` (one for the output of the embeddings + one for the output of each layer) of
shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(tf.Tensor)`, `optional`, returned when ``output_attentions=True`` is passed or when ``config.output_attentions=True``):
Tuple of :obj:`tf.Tensor` (one for each layer) of shape :obj:`(batch_size, num_heads, sequence_length, x +
attention_window + 1)`, where ``x`` is the number of tokens with global attention mask.
Local attentions weights after the attention softmax, used to compute the weighted average in the
self-attention heads. Those are the attention weights from every token in the sequence to every token with
global attention (first ``x`` values) and to every token in the attention window (remaining
``attention_window + 1`` values). Note that the first ``x`` values refer to tokens with fixed positions in
the text, but the remaining ``attention_window + 1`` values refer to tokens with relative positions: the
attention weight of a token to itself is located at index ``x + attention_window / 2`` and the
``attention_window / 2`` preceding (succeeding) values are the attention weights to the ``attention_window
/ 2`` preceding (succeeding) tokens. If the attention window contains a token with global attention, the
attention weight at the corresponding index is set to 0; the value should be accessed from the first ``x``
attention weights. If a token has global attention, the attention weights to all other tokens in
:obj:`attentions` is set to 0, the values should be accessed from :obj:`global_attentions`.
global_attentions (:obj:`tuple(tf.Tensor)`, `optional`, returned when ``output_attentions=True`` is passed or when ``config.output_attentions=True``):
Tuple of :obj:`tf.Tensor` (one for each layer) of shape :obj:`(batch_size, num_heads, sequence_length, x)`,
where ``x`` is the number of tokens with global attention mask.
Global attentions weights after the attention softmax, used to compute the weighted average in the
self-attention heads. Those are the attention weights from every token with global attention to every token
in the sequence.
"""
loss: Optional[tf.Tensor] = None
start_logits: tf.Tensor = None
end_logits: tf.Tensor = None
hidden_states: Optional[Tuple[tf.Tensor]] = None
attentions: Optional[Tuple[tf.Tensor]] = None
global_attentions: Optional[Tuple[tf.Tensor]] = None
@dataclass
class TFLongformerSequenceClassifierOutput(ModelOutput):
"""
Base class for outputs of sentence classification models.
Args:
loss (:obj:`tf.Tensor` of shape :obj:`(1,)`, `optional`, returned when :obj:`labels` is provided):
Classification (or regression if config.num_labels==1) loss.
logits (:obj:`tf.Tensor` of shape :obj:`(batch_size, config.num_labels)`):
Classification (or regression if config.num_labels==1) scores (before SoftMax).
hidden_states (:obj:`tuple(tf.Tensor)`, `optional`, returned when ``output_hidden_states=True`` is passed or when ``config.output_hidden_states=True``):
Tuple of :obj:`tf.Tensor` (one for the output of the embeddings + one for the output of each layer) of
shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(tf.Tensor)`, `optional`, returned when ``output_attentions=True`` is passed or when ``config.output_attentions=True``):
Tuple of :obj:`tf.Tensor` (one for each layer) of shape :obj:`(batch_size, num_heads, sequence_length, x +
attention_window + 1)`, where ``x`` is the number of tokens with global attention mask.
Local attentions weights after the attention softmax, used to compute the weighted average in the
self-attention heads. Those are the attention weights from every token in the sequence to every token with
global attention (first ``x`` values) and to every token in the attention window (remaining
``attention_window + 1`` values). Note that the first ``x`` values refer to tokens with fixed positions in
the text, but the remaining ``attention_window + 1`` values refer to tokens with relative positions: the
attention weight of a token to itself is located at index ``x + attention_window / 2`` and the
``attention_window / 2`` preceding (succeeding) values are the attention weights to the ``attention_window
/ 2`` preceding (succeeding) tokens. If the attention window contains a token with global attention, the
attention weight at the corresponding index is set to 0; the value should be accessed from the first ``x``
attention weights. If a token has global attention, the attention weights to all other tokens in
:obj:`attentions` is set to 0, the values should be accessed from :obj:`global_attentions`.
global_attentions (:obj:`tuple(tf.Tensor)`, `optional`, returned when ``output_attentions=True`` is passed or when ``config.output_attentions=True``):
Tuple of :obj:`tf.Tensor` (one for each layer) of shape :obj:`(batch_size, num_heads, sequence_length, x)`,
where ``x`` is the number of tokens with global attention mask.
Global attentions weights after the attention softmax, used to compute the weighted average in the
self-attention heads. Those are the attention weights from every token with global attention to every token
in the sequence.
"""
loss: Optional[tf.Tensor] = None
logits: tf.Tensor = None
hidden_states: Optional[Tuple[tf.Tensor]] = None
attentions: Optional[Tuple[tf.Tensor]] = None
global_attentions: Optional[Tuple[tf.Tensor]] = None
@dataclass
class TFLongformerMultipleChoiceModelOutput(ModelOutput):
"""
Base class for outputs of multiple choice models.
Args:
loss (:obj:`tf.Tensor` of shape `(1,)`, `optional`, returned when :obj:`labels` is provided):
Classification loss.
logits (:obj:`tf.Tensor` of shape :obj:`(batch_size, num_choices)`):
`num_choices` is the second dimension of the input tensors. (see `input_ids` above).
Classification scores (before SoftMax).
hidden_states (:obj:`tuple(tf.Tensor)`, `optional`, returned when ``output_hidden_states=True`` is passed or when ``config.output_hidden_states=True``):
Tuple of :obj:`tf.Tensor` (one for the output of the embeddings + one for the output of each layer) of
shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(tf.Tensor)`, `optional`, returned when ``output_attentions=True`` is passed or when ``config.output_attentions=True``):
Tuple of :obj:`tf.Tensor` (one for each layer) of shape :obj:`(batch_size, num_heads, sequence_length, x +
attention_window + 1)`, where ``x`` is the number of tokens with global attention mask.
Local attentions weights after the attention softmax, used to compute the weighted average in the
self-attention heads. Those are the attention weights from every token in the sequence to every token with
global attention (first ``x`` values) and to every token in the attention window (remaining
``attention_window + 1`` values). Note that the first ``x`` values refer to tokens with fixed positions in
the text, but the remaining ``attention_window + 1`` values refer to tokens with relative positions: the
attention weight of a token to itself is located at index ``x + attention_window / 2`` and the
``attention_window / 2`` preceding (succeeding) values are the attention weights to the ``attention_window
/ 2`` preceding (succeeding) tokens. If the attention window contains a token with global attention, the
attention weight at the corresponding index is set to 0; the value should be accessed from the first ``x``
attention weights. If a token has global attention, the attention weights to all other tokens in
:obj:`attentions` is set to 0, the values should be accessed from :obj:`global_attentions`.
global_attentions (:obj:`tuple(tf.Tensor)`, `optional`, returned when ``output_attentions=True`` is passed or when ``config.output_attentions=True``):
Tuple of :obj:`tf.Tensor` (one for each layer) of shape :obj:`(batch_size, num_heads, sequence_length, x)`,
where ``x`` is the number of tokens with global attention mask.
Global attentions weights after the attention softmax, used to compute the weighted average in the
self-attention heads. Those are the attention weights from every token with global attention to every token
in the sequence.
"""
loss: Optional[tf.Tensor] = None
logits: tf.Tensor = None
hidden_states: Optional[Tuple[tf.Tensor]] = None
attentions: Optional[Tuple[tf.Tensor]] = None
global_attentions: Optional[Tuple[tf.Tensor]] = None
@dataclass
class TFLongformerTokenClassifierOutput(ModelOutput):
"""
Base class for outputs of token classification models.
Args:
loss (:obj:`tf.Tensor` of shape :obj:`(1,)`, `optional`, returned when ``labels`` is provided) :
Classification loss.
logits (:obj:`tf.Tensor` of shape :obj:`(batch_size, sequence_length, config.num_labels)`):
Classification scores (before SoftMax).
hidden_states (:obj:`tuple(tf.Tensor)`, `optional`, returned when ``output_hidden_states=True`` is passed or when ``config.output_hidden_states=True``):
Tuple of :obj:`tf.Tensor` (one for the output of the embeddings + one for the output of each layer) of
shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(tf.Tensor)`, `optional`, returned when ``output_attentions=True`` is passed or when ``config.output_attentions=True``):
Tuple of :obj:`tf.Tensor` (one for each layer) of shape :obj:`(batch_size, num_heads, sequence_length, x +
attention_window + 1)`, where ``x`` is the number of tokens with global attention mask.
Local attentions weights after the attention softmax, used to compute the weighted average in the
self-attention heads. Those are the attention weights from every token in the sequence to every token with
global attention (first ``x`` values) and to every token in the attention window (remaining
``attention_window + 1`` values). Note that the first ``x`` values refer to tokens with fixed positions in
the text, but the remaining ``attention_window + 1`` values refer to tokens with relative positions: the
attention weight of a token to itself is located at index ``x + attention_window / 2`` and the
``attention_window / 2`` preceding (succeeding) values are the attention weights to the ``attention_window
/ 2`` preceding (succeeding) tokens. If the attention window contains a token with global attention, the
attention weight at the corresponding index is set to 0; the value should be accessed from the first ``x``
attention weights. If a token has global attention, the attention weights to all other tokens in
:obj:`attentions` is set to 0, the values should be accessed from :obj:`global_attentions`.
global_attentions (:obj:`tuple(tf.Tensor)`, `optional`, returned when ``output_attentions=True`` is passed or when ``config.output_attentions=True``):
Tuple of :obj:`tf.Tensor` (one for each layer) of shape :obj:`(batch_size, num_heads, sequence_length, x)`,
where ``x`` is the number of tokens with global attention mask.
Global attentions weights after the attention softmax, used to compute the weighted average in the
self-attention heads. Those are the attention weights from every token with global attention to every token
in the sequence.
"""
loss: Optional[tf.Tensor] = None
logits: tf.Tensor = None
hidden_states: Optional[Tuple[tf.Tensor]] = None
attentions: Optional[Tuple[tf.Tensor]] = None
global_attentions: Optional[Tuple[tf.Tensor]] = None
def _compute_global_attention_mask(input_ids_shape, sep_token_indices, before_sep_token=True):
"""
Computes global attention mask by putting attention on all tokens before `sep_token_id` if `before_sep_token is
True` else after `sep_token_id`.
"""
assert shape_list(sep_token_indices)[1] == 2, "`input_ids` should have two dimensions"
question_end_index = tf.reshape(sep_token_indices, (input_ids_shape[0], 3, 2))[:, 0, 1][:, None]
# bool attention mask with True in locations of global attention
attention_mask = tf.expand_dims(tf.range(input_ids_shape[1]), axis=0)
attention_mask = tf.tile(attention_mask, (input_ids_shape[0], 1))
if before_sep_token is True:
question_end_index = tf.tile(question_end_index, (1, input_ids_shape[1]))
attention_mask = tf.cast(attention_mask < question_end_index, dtype=question_end_index.dtype)
else:
# last token is separation token and should not be counted and in the middle are two separation tokens
question_end_index = tf.tile(question_end_index + 1, (1, input_ids_shape[1]))
attention_mask = (
tf.cast(
attention_mask > question_end_index,
dtype=question_end_index.dtype,
)
* tf.cast(attention_mask < input_ids_shape[-1], dtype=question_end_index.dtype)
)
return attention_mask
# Copied from transformers.models.roberta.modeling_tf_roberta.TFRobertaLMHead with Roberta->Longformer
class TFLongformerLMHead(tf.keras.layers.Layer):
"""Longformer Head for masked language modeling."""
def __init__(self, config, input_embeddings, **kwargs):
super().__init__(**kwargs)
self.vocab_size = config.vocab_size
self.hidden_size = config.hidden_size
self.dense = tf.keras.layers.Dense(
config.hidden_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
self.layer_norm = tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="layer_norm")
self.act = get_tf_activation("gelu")
# The output weights are the same as the input embeddings, but there is
# an output-only bias for each token.
self.decoder = input_embeddings
def build(self, input_shape):
self.bias = self.add_weight(shape=(self.vocab_size,), initializer="zeros", trainable=True, name="bias")
super().build(input_shape)
def get_output_embeddings(self):
return self.decoder
def set_output_embeddings(self, value):
self.decoder.weight = value
self.decoder.vocab_size = shape_list(value)[0]
def get_bias(self):
return {"bias": self.bias}
def set_bias(self, value):
self.bias = value["bias"]
self.vocab_size = shape_list(value["bias"])[0]
def call(self, hidden_states):
hidden_states = self.dense(hidden_states)
hidden_states = self.act(hidden_states)
hidden_states = self.layer_norm(hidden_states)
# project back to size of vocabulary with bias
seq_length = shape_list(tensor=hidden_states)[1]
hidden_states = tf.reshape(tensor=hidden_states, shape=[-1, self.hidden_size])
hidden_states = tf.matmul(a=hidden_states, b=self.decoder.weight, transpose_b=True)
hidden_states = tf.reshape(tensor=hidden_states, shape=[-1, seq_length, self.vocab_size])
hidden_states = tf.nn.bias_add(value=hidden_states, bias=self.bias)
return hidden_states
# Copied from transformers.models.roberta.modeling_tf_roberta.TFRobertaEmbeddings with Roberta->Longformer
class TFLongformerEmbeddings(tf.keras.layers.Layer):
"""
Same as BertEmbeddings with a tiny tweak for positional embeddings indexing.
"""
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.padding_idx = 1
self.vocab_size = config.vocab_size
self.type_vocab_size = config.type_vocab_size
self.hidden_size = config.hidden_size
self.max_position_embeddings = config.max_position_embeddings
self.initializer_range = config.initializer_range
self.embeddings_sum = tf.keras.layers.Add()
self.LayerNorm = tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="LayerNorm")
self.dropout = tf.keras.layers.Dropout(rate=config.hidden_dropout_prob)
def build(self, input_shape: tf.TensorShape):
with tf.name_scope("word_embeddings"):
self.weight = self.add_weight(
name="weight",
shape=[self.vocab_size, self.hidden_size],
initializer=get_initializer(self.initializer_range),
)
with tf.name_scope("token_type_embeddings"):
self.token_type_embeddings = self.add_weight(
name="embeddings",
shape=[self.type_vocab_size, self.hidden_size],
initializer=get_initializer(self.initializer_range),
)
with tf.name_scope("position_embeddings"):
self.position_embeddings = self.add_weight(
name="embeddings",
shape=[self.max_position_embeddings, self.hidden_size],
initializer=get_initializer(self.initializer_range),
)
super().build(input_shape)
def create_position_ids_from_input_ids(self, input_ids):
"""
Replace non-padding symbols with their position numbers. Position numbers begin at padding_idx+1. Padding
symbols are ignored. This is modified from fairseq's `utils.make_positions`.
Args:
input_ids: tf.Tensor
Returns: tf.Tensor
"""
mask = tf.cast(tf.math.not_equal(input_ids, self.padding_idx), dtype=input_ids.dtype)
incremental_indices = tf.math.cumsum(mask, axis=1) * mask
return incremental_indices + self.padding_idx
def call(self, input_ids=None, position_ids=None, token_type_ids=None, inputs_embeds=None, training=False):
"""
Applies embedding based on inputs tensor.
Returns:
final_embeddings (:obj:`tf.Tensor`): output embedding tensor.
"""
assert not (input_ids is None and inputs_embeds is None)
if input_ids is not None:
inputs_embeds = tf.gather(params=self.weight, indices=input_ids)
input_shape = shape_list(inputs_embeds)[:-1]
if token_type_ids is None:
token_type_ids = tf.fill(dims=input_shape, value=0)
if position_ids is None:
if input_ids is not None:
# Create the position ids from the input token ids. Any padded tokens remain padded.
position_ids = self.create_position_ids_from_input_ids(input_ids=input_ids)
else:
position_ids = tf.expand_dims(
tf.range(start=self.padding_idx + 1, limit=input_shape[-1] + self.padding_idx + 1), axis=0
)
position_ids = tf.tile(input=position_ids, multiples=(input_shape[0], 1))
position_embeds = tf.gather(params=self.position_embeddings, indices=position_ids)
token_type_embeds = tf.gather(params=self.token_type_embeddings, indices=token_type_ids)
final_embeddings = self.embeddings_sum(inputs=[inputs_embeds, position_embeds, token_type_embeds])
final_embeddings = self.LayerNorm(inputs=final_embeddings)
final_embeddings = self.dropout(inputs=final_embeddings, training=training)
return final_embeddings
# Copied from transformers.models.bert.modeling_tf_bert.TFBertIntermediate with Bert->Longformer
class TFLongformerIntermediate(tf.keras.layers.Layer):
def __init__(self, config: LongformerConfig, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(
units=config.intermediate_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = get_tf_activation(config.hidden_act)
else:
self.intermediate_act_fn = config.hidden_act
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
hidden_states = self.dense(inputs=hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
# Copied from transformers.models.bert.modeling_tf_bert.TFBertOutput with Bert->Longformer
class TFLongformerOutput(tf.keras.layers.Layer):
def __init__(self, config: LongformerConfig, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(
units=config.hidden_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
self.LayerNorm = tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="LayerNorm")
self.dropout = tf.keras.layers.Dropout(rate=config.hidden_dropout_prob)
def call(self, hidden_states: tf.Tensor, input_tensor: tf.Tensor, training: bool = False) -> tf.Tensor:
hidden_states = self.dense(inputs=hidden_states)
hidden_states = self.dropout(inputs=hidden_states, training=training)
hidden_states = self.LayerNorm(inputs=hidden_states + input_tensor)
return hidden_states
# Copied from transformers.models.bert.modeling_tf_bert.TFBertPooler with Bert->Longformer
class TFLongformerPooler(tf.keras.layers.Layer):
def __init__(self, config: LongformerConfig, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(
units=config.hidden_size,
kernel_initializer=get_initializer(config.initializer_range),
activation="tanh",
name="dense",
)
def call(self, hidden_states: tf.Tensor) -> tf.Tensor:
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
pooled_output = self.dense(inputs=first_token_tensor)
return pooled_output
# Copied from transformers.models.bert.modeling_tf_bert.TFBertSelfOutput with Bert->Longformer
class TFLongformerSelfOutput(tf.keras.layers.Layer):
def __init__(self, config: LongformerConfig, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(
units=config.hidden_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
self.LayerNorm = tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="LayerNorm")
self.dropout = tf.keras.layers.Dropout(rate=config.hidden_dropout_prob)
def call(self, hidden_states: tf.Tensor, input_tensor: tf.Tensor, training: bool = False) -> tf.Tensor:
hidden_states = self.dense(inputs=hidden_states)
hidden_states = self.dropout(inputs=hidden_states, training=training)
hidden_states = self.LayerNorm(inputs=hidden_states + input_tensor)
return hidden_states
class TFLongformerSelfAttention(tf.keras.layers.Layer):
def __init__(self, config, layer_id, **kwargs):
super().__init__(**kwargs)
if config.hidden_size % config.num_attention_heads != 0:
raise ValueError(
"The hidden size (%d) is not a multiple of the number of attention "
"heads (%d)" % (config.hidden_size, config.num_attention_heads)
)
self.num_heads = config.num_attention_heads
self.head_dim = int(config.hidden_size / config.num_attention_heads)
self.embed_dim = config.hidden_size
self.query = tf.keras.layers.Dense(
self.embed_dim,
kernel_initializer=get_initializer(config.initializer_range),
name="query",
)
self.key = tf.keras.layers.Dense(
self.embed_dim,
kernel_initializer=get_initializer(config.initializer_range),
name="key",
)
self.value = tf.keras.layers.Dense(
self.embed_dim,
kernel_initializer=get_initializer(config.initializer_range),
name="value",
)
# separate projection layers for tokens with global attention
self.query_global = tf.keras.layers.Dense(
self.embed_dim,
kernel_initializer=get_initializer(config.initializer_range),
name="query_global",
)
self.key_global = tf.keras.layers.Dense(
self.embed_dim,
kernel_initializer=get_initializer(config.initializer_range),
name="key_global",
)
self.value_global = tf.keras.layers.Dense(
self.embed_dim,
kernel_initializer=get_initializer(config.initializer_range),
name="value_global",
)
self.dropout = tf.keras.layers.Dropout(config.attention_probs_dropout_prob)
self.global_dropout = tf.keras.layers.Dropout(config.attention_probs_dropout_prob)
self.layer_id = layer_id
attention_window = config.attention_window[self.layer_id]
assert (
attention_window % 2 == 0
), f"`attention_window` for layer {self.layer_id} has to be an even value. Given {attention_window}"
assert (
attention_window > 0
), f"`attention_window` for layer {self.layer_id} has to be positive. Given {attention_window}"
self.one_sided_attn_window_size = attention_window // 2
def call(
self,
inputs,
training=False,
):
"""
LongformerSelfAttention expects `len(hidden_states)` to be multiple of `attention_window`. Padding to
`attention_window` happens in LongformerModel.forward to avoid redoing the padding on each layer.
The `attention_mask` is changed in :meth:`LongformerModel.forward` from 0, 1, 2 to:
* -10000: no attention
* 0: local attention
* +10000: global attention
"""
# retrieve input args
(
hidden_states,
attention_mask,
layer_head_mask,
is_index_masked,
is_index_global_attn,
is_global_attn,
) = inputs
# project hidden states
query_vectors = self.query(hidden_states)
key_vectors = self.key(hidden_states)
value_vectors = self.value(hidden_states)
batch_size, seq_len, embed_dim = shape_list(hidden_states)
if tf.executing_eagerly():
tf.debugging.assert_equal(
embed_dim,
self.embed_dim,
message=f"hidden_states should have embed_dim = {self.embed_dim}, but has {embed_dim}",
)
# normalize query
query_vectors /= tf.math.sqrt(tf.cast(self.head_dim, dtype=query_vectors.dtype))
query_vectors = tf.reshape(query_vectors, (batch_size, seq_len, self.num_heads, self.head_dim))
key_vectors = tf.reshape(key_vectors, (batch_size, seq_len, self.num_heads, self.head_dim))
# attn_probs = (batch_size, seq_len, num_heads, window*2+1)
attn_scores = self._sliding_chunks_query_key_matmul(
query_vectors, key_vectors, self.one_sided_attn_window_size
)
# diagonal mask with zeros everywhere and -inf inplace of padding
diagonal_mask = self._sliding_chunks_query_key_matmul(
tf.ones(shape_list(attention_mask)),
attention_mask,
self.one_sided_attn_window_size,
)
# pad local attention probs
attn_scores += diagonal_mask
if tf.executing_eagerly():
tf.debugging.assert_equal(
shape_list(attn_scores),
[batch_size, seq_len, self.num_heads, self.one_sided_attn_window_size * 2 + 1],
message=f"attn_probs should be of size ({batch_size}, {seq_len}, {self.num_heads}, {self.one_sided_attn_window_size * 2 + 1}), but is of size {shape_list(attn_scores)}",
)
# compute global attn indices required through out forward fn
(
max_num_global_attn_indices,
is_index_global_attn_nonzero,
is_local_index_global_attn_nonzero,
is_local_index_no_global_attn_nonzero,
) = self._get_global_attn_indices(is_index_global_attn)
# this function is only relevant for global attention
attn_scores = tf.cond(
is_global_attn,
lambda: self._concat_with_global_key_attn_probs(
attn_scores=attn_scores,
query_vectors=query_vectors,
key_vectors=key_vectors,
max_num_global_attn_indices=max_num_global_attn_indices,
is_index_global_attn_nonzero=is_index_global_attn_nonzero,
is_local_index_global_attn_nonzero=is_local_index_global_attn_nonzero,
is_local_index_no_global_attn_nonzero=is_local_index_no_global_attn_nonzero,
),
lambda: attn_scores,
)
attn_probs = tf.nn.softmax(attn_scores, axis=-1)
# softmax sometimes inserts NaN if all positions are masked, replace them with 0
# Make sure to create a mask with the proper shape:
# if is_global_attn==True => [batch_size, seq_len, self.num_heads, self.one_sided_attn_window_size * 2 + max_num_global_attn_indices + 1]
# if is_global_attn==False => [batch_size, seq_len, self.num_heads, self.one_sided_attn_window_size * 2 + 1]
masked_index = tf.cond(
is_global_attn,
lambda: tf.tile(
is_index_masked[:, :, None, None],
(1, 1, self.num_heads, self.one_sided_attn_window_size * 2 + max_num_global_attn_indices + 1),
),
lambda: tf.tile(
is_index_masked[:, :, None, None],
(1, 1, self.num_heads, self.one_sided_attn_window_size * 2 + 1),
),
)
attn_probs = tf.where(
masked_index,
tf.zeros(shape_list(masked_index), dtype=attn_probs.dtype),
attn_probs,
)
if layer_head_mask is not None:
if tf.executing_eagerly():
tf.debugging.assert_equal(
shape_list(layer_head_mask),
[self.num_heads],
message=f"Head mask for a single layer should be of size {(self.num_heads)}, but is {shape_list(layer_head_mask)}",
)
attn_probs = tf.reshape(layer_head_mask, (1, 1, -1, 1)) * attn_probs
# apply dropout
attn_probs = self.dropout(attn_probs, training=training)
value_vectors = tf.reshape(value_vectors, (batch_size, seq_len, self.num_heads, self.head_dim))
# if global attention, compute sum of global and local attn
attn_output = tf.cond(
is_global_attn,
lambda: self._compute_attn_output_with_global_indices(
value_vectors=value_vectors,
attn_probs=attn_probs,
max_num_global_attn_indices=max_num_global_attn_indices,
is_index_global_attn_nonzero=is_index_global_attn_nonzero,
is_local_index_global_attn_nonzero=is_local_index_global_attn_nonzero,
),
lambda: self._sliding_chunks_matmul_attn_probs_value(
attn_probs, value_vectors, self.one_sided_attn_window_size
),
)
if tf.executing_eagerly():
tf.debugging.assert_equal(
shape_list(attn_output),
[batch_size, seq_len, self.num_heads, self.head_dim],
message="Unexpected size",
)
attn_output = tf.reshape(attn_output, (batch_size, seq_len, embed_dim))
# compute value for global attention and overwrite to attention output
# TODO: remove the redundant computation
attn_output, global_attn_probs = tf.cond(
is_global_attn,
lambda: self._compute_global_attn_output_from_hidden(
attn_output=attn_output,
hidden_states=hidden_states,
max_num_global_attn_indices=max_num_global_attn_indices,
layer_head_mask=layer_head_mask,
is_local_index_global_attn_nonzero=is_local_index_global_attn_nonzero,
is_index_global_attn_nonzero=is_index_global_attn_nonzero,
is_local_index_no_global_attn_nonzero=is_local_index_no_global_attn_nonzero,
is_index_masked=is_index_masked,
training=training,
),
lambda: (attn_output, tf.zeros((batch_size, self.num_heads, max_num_global_attn_indices, seq_len))),
)
# make sure that local attention probabilities are set to 0 for indices of global attn
# Make sure to create a mask with the proper shape:
# if is_global_attn==True => [batch_size, seq_len, self.num_heads, self.one_sided_attn_window_size * 2 + max_num_global_attn_indices + 1]
# if is_global_attn==False => [batch_size, seq_len, self.num_heads, self.one_sided_attn_window_size * 2 + 1]
masked_global_attn_index = tf.cond(
is_global_attn,
lambda: tf.tile(
is_index_global_attn[:, :, None, None],
(1, 1, self.num_heads, self.one_sided_attn_window_size * 2 + max_num_global_attn_indices + 1),
),
lambda: tf.tile(
is_index_global_attn[:, :, None, None],
(1, 1, self.num_heads, self.one_sided_attn_window_size * 2 + 1),
),
)
attn_probs = tf.where(
masked_global_attn_index,
tf.zeros(shape_list(masked_global_attn_index), dtype=attn_probs.dtype),
attn_probs,
)
outputs = (attn_output, attn_probs, global_attn_probs)
return outputs
def _sliding_chunks_query_key_matmul(self, query, key, window_overlap):
"""
Matrix multiplication of query and key tensors using with a sliding window attention pattern. This
implementation splits the input into overlapping chunks of size 2w (e.g. 512 for pretrained Longformer) with an
overlap of size window_overlap
"""
batch_size, seq_len, num_heads, head_dim = shape_list(query)
if tf.executing_eagerly():
tf.debugging.assert_equal(
seq_len % (window_overlap * 2),
0,
message=f"Sequence length should be multiple of {window_overlap * 2}. Given {seq_len}",
)
tf.debugging.assert_equal(
shape_list(query),
shape_list(key),
message=f"Shape of query and key should be equal, but got query: {shape_list(query)} and key: {shape_list(key)}",
)
chunks_count = seq_len // window_overlap - 1
# group batch_size and num_heads dimensions into one, then chunk seq_len into chunks of size window_overlap * 2
query = tf.reshape(
tf.transpose(query, (0, 2, 1, 3)),
(batch_size * num_heads, seq_len, head_dim),
)
key = tf.reshape(tf.transpose(key, (0, 2, 1, 3)), (batch_size * num_heads, seq_len, head_dim))
chunked_query = self._chunk(query, window_overlap)
chunked_key = self._chunk(key, window_overlap)
# matrix multiplication
# bcxd: batch_size * num_heads x chunks x 2window_overlap x head_dim
# bcyd: batch_size * num_heads x chunks x 2window_overlap x head_dim
# bcxy: batch_size * num_heads x chunks x 2window_overlap x 2window_overlap
chunked_query = tf.cast(chunked_query, dtype=chunked_key.dtype)
chunked_attention_scores = tf.einsum("bcxd,bcyd->bcxy", chunked_query, chunked_key) # multiply
# convert diagonals into columns
paddings = tf.convert_to_tensor([[0, 0], [0, 0], [0, 1], [0, 0]])
diagonal_chunked_attention_scores = self._pad_and_transpose_last_two_dims(chunked_attention_scores, paddings)
# allocate space for the overall attention matrix where the chunks are combined. The last dimension
# has (window_overlap * 2 + 1) columns. The first (window_overlap) columns are the window_overlap lower triangles (attention from a word to
# window_overlap previous words). The following column is attention score from each word to itself, then
# followed by window_overlap columns for the upper triangle.
# copy parts from diagonal_chunked_attention_scores into the combined matrix of attentions
# - copying the main diagonal and the upper triangle
# TODO: This code is most likely not very efficient and should be improved
diagonal_attn_scores_up_triang = tf.concat(
[
diagonal_chunked_attention_scores[:, :, :window_overlap, : window_overlap + 1],
diagonal_chunked_attention_scores[:, -1:, window_overlap:, : window_overlap + 1],
],
axis=1,
)
# - copying the lower triangle
diagonal_attn_scores_low_triang = tf.concat(
[
tf.zeros(
(batch_size * num_heads, 1, window_overlap, window_overlap),
dtype=diagonal_chunked_attention_scores.dtype,
),
diagonal_chunked_attention_scores[:, :, -(window_overlap + 1) : -1, window_overlap + 1 :],
],
axis=1,
)
diagonal_attn_scores_first_chunk = tf.concat(
[
tf.roll(
diagonal_chunked_attention_scores,
shift=[1, window_overlap],
axis=[2, 3],
)[:, :, :window_overlap, :window_overlap],
tf.zeros(
(batch_size * num_heads, 1, window_overlap, window_overlap),
dtype=diagonal_chunked_attention_scores.dtype,
),
],
axis=1,
)
first_chunk_mask = (
tf.tile(
tf.range(chunks_count + 1)[None, :, None, None],
(batch_size * num_heads, 1, window_overlap, window_overlap),
)
< 1
)
diagonal_attn_scores_low_triang = tf.where(
first_chunk_mask,
diagonal_attn_scores_first_chunk,
diagonal_attn_scores_low_triang,
)
# merging upper and lower triangle
diagonal_attention_scores = tf.concat(
[diagonal_attn_scores_low_triang, diagonal_attn_scores_up_triang], axis=-1
)
# separate batch_size and num_heads dimensions again
diagonal_attention_scores = tf.transpose(
tf.reshape(
diagonal_attention_scores,
(batch_size, num_heads, seq_len, 2 * window_overlap + 1),
),
(0, 2, 1, 3),
)
diagonal_attention_scores = self._mask_invalid_locations(diagonal_attention_scores, window_overlap)
return diagonal_attention_scores
@staticmethod
def _mask_invalid_locations(input_tensor, window_overlap):
# create correct upper triangle bool mask
mask_2d_upper = tf.reverse(
tf.linalg.band_part(tf.ones(shape=(window_overlap, window_overlap + 1)), -1, 0),
axis=[0],
)
# pad to full matrix
padding = tf.convert_to_tensor(
[[0, shape_list(input_tensor)[1] - window_overlap], [0, shape_list(input_tensor)[3] - window_overlap - 1]]
)
# create lower mask
mask_2d = tf.pad(mask_2d_upper, padding)
# combine with upper mask
mask_2d = mask_2d + tf.reverse(mask_2d, axis=[0, 1])
# broadcast to full matrix
mask_4d = tf.tile(mask_2d[None, :, None, :], (shape_list(input_tensor)[0], 1, 1, 1))
# inf tensor used for masking
inf_tensor = -float("inf") * tf.ones_like(input_tensor)
# mask
input_tensor = tf.where(tf.math.greater(mask_4d, 0), inf_tensor, input_tensor)
return input_tensor
def _sliding_chunks_matmul_attn_probs_value(self, attn_probs, value, window_overlap):
"""
Same as _sliding_chunks_query_key_matmul but for attn_probs and value tensors. Returned tensor will be of the
same shape as `attn_probs`
"""
batch_size, seq_len, num_heads, head_dim = shape_list(value)
if tf.executing_eagerly():
tf.debugging.assert_equal(
seq_len % (window_overlap * 2),
0,
message="Seq_len has to be multiple of 2 * window_overlap",
)
tf.debugging.assert_equal(
shape_list(attn_probs)[:3],
shape_list(value)[:3],
message="value and attn_probs must have same dims (except head_dim)",
)
tf.debugging.assert_equal(
shape_list(attn_probs)[3],
2 * window_overlap + 1,
message="attn_probs last dim has to be 2 * window_overlap + 1",
)
chunks_count = seq_len // window_overlap - 1
# group batch_size and num_heads dimensions into one, then chunk seq_len into chunks of size 2 window overlap
chunked_attn_probs = tf.reshape(
tf.transpose(attn_probs, (0, 2, 1, 3)),
(
batch_size * num_heads,
seq_len // window_overlap,
window_overlap,
2 * window_overlap + 1,
),
)
# group batch_size and num_heads dimensions into one
value = tf.reshape(
tf.transpose(value, (0, 2, 1, 3)),
(batch_size * num_heads, seq_len, head_dim),
)
# pad seq_len with w at the beginning of the sequence and another window overlap at the end
paddings = tf.convert_to_tensor([[0, 0], [window_overlap, window_overlap], [0, 0]])
padded_value = tf.pad(value, paddings, constant_values=-1)
# chunk padded_value into chunks of size 3 window overlap and an overlap of size window overlap
frame_size = 3 * window_overlap * head_dim
frame_hop_size = (shape_list(padded_value)[1] * head_dim - frame_size) // chunks_count
chunked_value = tf.signal.frame(
tf.reshape(padded_value, (batch_size * num_heads, -1)),
frame_size,
frame_hop_size,
)
chunked_value = tf.reshape(
chunked_value,
(batch_size * num_heads, chunks_count + 1, 3 * window_overlap, head_dim),
)
if tf.executing_eagerly():
tf.debugging.assert_equal(
shape_list(chunked_value),
[batch_size * num_heads, chunks_count + 1, 3 * window_overlap, head_dim],
message="Chunked value has the wrong shape",
)
chunked_attn_probs = self._pad_and_diagonalize(chunked_attn_probs)
context = tf.einsum("bcwd,bcdh->bcwh", chunked_attn_probs, chunked_value)
context = tf.transpose(
tf.reshape(context, (batch_size, num_heads, seq_len, head_dim)),
(0, 2, 1, 3),
)
return context
@staticmethod
def _pad_and_transpose_last_two_dims(hidden_states_padded, paddings):
"""pads rows and then flips rows and columns"""
hidden_states_padded = tf.pad(
hidden_states_padded, paddings
) # padding value is not important because it will be overwritten
batch_size, chunk_size, seq_length, hidden_dim = shape_list(hidden_states_padded)
hidden_states_padded = tf.reshape(hidden_states_padded, (batch_size, chunk_size, hidden_dim, seq_length))
return hidden_states_padded
@staticmethod
def _pad_and_diagonalize(chunked_hidden_states):
"""
shift every row 1 step right, converting columns into diagonals.
Example::
chunked_hidden_states: [ 0.4983, 2.6918, -0.0071, 1.0492,
-1.8348, 0.7672, 0.2986, 0.0285,
-0.7584, 0.4206, -0.0405, 0.1599,
2.0514, -1.1600, 0.5372, 0.2629 ]
window_overlap = num_rows = 4
(pad & diagonalize) =>
[ 0.4983, 2.6918, -0.0071, 1.0492, 0.0000, 0.0000, 0.0000
0.0000, -1.8348, 0.7672, 0.2986, 0.0285, 0.0000, 0.0000
0.0000, 0.0000, -0.7584, 0.4206, -0.0405, 0.1599, 0.0000
0.0000, 0.0000, 0.0000, 2.0514, -1.1600, 0.5372, 0.2629 ]
"""
total_num_heads, num_chunks, window_overlap, hidden_dim = shape_list(chunked_hidden_states)
paddings = tf.convert_to_tensor([[0, 0], [0, 0], [0, 0], [0, window_overlap + 1]])
chunked_hidden_states = tf.pad(
chunked_hidden_states, paddings
) # total_num_heads x num_chunks x window_overlap x (hidden_dim+window_overlap+1). Padding value is not important because it'll be overwritten
chunked_hidden_states = tf.reshape(
chunked_hidden_states, (total_num_heads, num_chunks, -1)
) # total_num_heads x num_chunks x window_overlapL+window_overlapwindow_overlap+window_overlap
chunked_hidden_states = chunked_hidden_states[
:, :, :-window_overlap
] # total_num_heads x num_chunks x window_overlapL+window_overlapwindow_overlap
chunked_hidden_states = tf.reshape(
chunked_hidden_states,
(total_num_heads, num_chunks, window_overlap, window_overlap + hidden_dim),
) # total_num_heads x num_chunks, window_overlap x hidden_dim+window_overlap
chunked_hidden_states = chunked_hidden_states[:, :, :, :-1]
return chunked_hidden_states
@staticmethod
def _chunk(hidden_states, window_overlap):
"""convert into overlapping chunks. Chunk size = 2w, overlap size = w"""
batch_size, seq_length, hidden_dim = shape_list(hidden_states)
num_output_chunks = 2 * (seq_length // (2 * window_overlap)) - 1
# define frame size and frame stride (similar to convolution)
frame_hop_size = window_overlap * hidden_dim
frame_size = 2 * frame_hop_size
hidden_states = tf.reshape(hidden_states, (batch_size, seq_length * hidden_dim))
# chunk with overlap
chunked_hidden_states = tf.signal.frame(hidden_states, frame_size, frame_hop_size)
if tf.executing_eagerly():
tf.debugging.assert_equal(
shape_list(chunked_hidden_states),
[batch_size, num_output_chunks, frame_size],
message=f"Make sure chunking is correctly applied. `Chunked hidden states should have output dimension {[batch_size, frame_size, num_output_chunks]}, but got {shape_list(chunked_hidden_states)}.",
)
chunked_hidden_states = tf.reshape(
chunked_hidden_states,
(batch_size, num_output_chunks, 2 * window_overlap, hidden_dim),
)
return chunked_hidden_states
@staticmethod
def _get_global_attn_indices(is_index_global_attn):
""" compute global attn indices required throughout forward pass """
# helper variable
num_global_attn_indices = tf.math.count_nonzero(is_index_global_attn, axis=1)
num_global_attn_indices = tf.cast(num_global_attn_indices, dtype=tf.constant(1).dtype)
# max number of global attn indices in batch
max_num_global_attn_indices = tf.reduce_max(num_global_attn_indices)
# indices of global attn
is_index_global_attn_nonzero = tf.where(is_index_global_attn)
# helper variable
is_local_index_global_attn = tf.range(max_num_global_attn_indices) < tf.expand_dims(
num_global_attn_indices, axis=-1
)
# location of the non-padding values within global attention indices
is_local_index_global_attn_nonzero = tf.where(is_local_index_global_attn)
# location of the padding values within global attention indices
is_local_index_no_global_attn_nonzero = tf.where(tf.math.logical_not(is_local_index_global_attn))
return (
max_num_global_attn_indices,
is_index_global_attn_nonzero,
is_local_index_global_attn_nonzero,
is_local_index_no_global_attn_nonzero,
)
def _concat_with_global_key_attn_probs(
self,
attn_scores,
key_vectors,
query_vectors,
max_num_global_attn_indices,
is_index_global_attn_nonzero,
is_local_index_global_attn_nonzero,
is_local_index_no_global_attn_nonzero,
):
batch_size = shape_list(key_vectors)[0]
# select global key vectors
global_key_vectors = tf.gather_nd(key_vectors, is_index_global_attn_nonzero)
# create only global key vectors
key_vectors_only_global = tf.scatter_nd(
is_local_index_global_attn_nonzero,
global_key_vectors,
shape=(
batch_size,
max_num_global_attn_indices,
self.num_heads,
self.head_dim,
),
)
# (batch_size, seq_len, num_heads, max_num_global_attn_indices)
attn_probs_from_global_key = tf.einsum("blhd,bshd->blhs", query_vectors, key_vectors_only_global)
# (batch_size, max_num_global_attn_indices, seq_len, num_heads)
attn_probs_from_global_key_trans = tf.transpose(attn_probs_from_global_key, (0, 3, 1, 2))
mask_shape = (shape_list(is_local_index_no_global_attn_nonzero)[0],) + tuple(
shape_list(attn_probs_from_global_key_trans)[-2:]
)
mask = tf.ones(mask_shape) * -10000.0
mask = tf.cast(mask, dtype=attn_probs_from_global_key_trans.dtype)
# scatter mask
attn_probs_from_global_key_trans = tf.tensor_scatter_nd_update(
attn_probs_from_global_key_trans,
is_local_index_no_global_attn_nonzero,
mask,
)
# (batch_size, seq_len, num_heads, max_num_global_attn_indices)
attn_probs_from_global_key = tf.transpose(attn_probs_from_global_key_trans, (0, 2, 3, 1))
# concat to attn_probs
# (batch_size, seq_len, num_heads, extra attention count + 2*window+1)
attn_scores = tf.concat((attn_probs_from_global_key, attn_scores), axis=-1)
return attn_scores
def _compute_attn_output_with_global_indices(
self,
value_vectors,
attn_probs,
max_num_global_attn_indices,
is_index_global_attn_nonzero,
is_local_index_global_attn_nonzero,
):
batch_size = shape_list(attn_probs)[0]
# cut local attn probs to global only
attn_probs_only_global = attn_probs[:, :, :, :max_num_global_attn_indices]
# select global value vectors
global_value_vectors = tf.gather_nd(value_vectors, is_index_global_attn_nonzero)
# create only global value vectors
value_vectors_only_global = tf.scatter_nd(
is_local_index_global_attn_nonzero,
global_value_vectors,
shape=(
batch_size,
max_num_global_attn_indices,
self.num_heads,
self.head_dim,
),
)
# compute attn output only global
attn_output_only_global = tf.einsum("blhs,bshd->blhd", attn_probs_only_global, value_vectors_only_global)
# reshape attn probs
attn_probs_without_global = attn_probs[:, :, :, max_num_global_attn_indices:]
# compute attn output with global
attn_output_without_global = self._sliding_chunks_matmul_attn_probs_value(
attn_probs_without_global, value_vectors, self.one_sided_attn_window_size
)
return attn_output_only_global + attn_output_without_global
def _compute_global_attn_output_from_hidden(
self,
attn_output,
hidden_states,
max_num_global_attn_indices,
layer_head_mask,
is_local_index_global_attn_nonzero,
is_index_global_attn_nonzero,
is_local_index_no_global_attn_nonzero,
is_index_masked,
training,
):
batch_size, seq_len = shape_list(hidden_states)[:2]
# prepare global hidden states
global_attn_hidden_states = tf.gather_nd(hidden_states, is_index_global_attn_nonzero)
global_attn_hidden_states = tf.scatter_nd(
is_local_index_global_attn_nonzero,
global_attn_hidden_states,
shape=(batch_size, max_num_global_attn_indices, self.embed_dim),
)
# global key, query, value
global_query_vectors_only_global = self.query_global(global_attn_hidden_states)
global_key_vectors = self.key_global(hidden_states)
global_value_vectors = self.value_global(hidden_states)
# normalize
global_query_vectors_only_global /= tf.math.sqrt(
tf.cast(self.head_dim, dtype=global_query_vectors_only_global.dtype)
)
global_query_vectors_only_global = self.reshape_and_transpose(global_query_vectors_only_global, batch_size)
global_key_vectors = self.reshape_and_transpose(global_key_vectors, batch_size)
global_value_vectors = self.reshape_and_transpose(global_value_vectors, batch_size)
# compute attn scores
global_attn_scores = tf.matmul(global_query_vectors_only_global, global_key_vectors, transpose_b=True)
if tf.executing_eagerly():
tf.debugging.assert_equal(
shape_list(global_attn_scores),
[batch_size * self.num_heads, max_num_global_attn_indices, seq_len],
message=f"global_attn_scores have the wrong size. Size should be {(batch_size * self.num_heads, max_num_global_attn_indices, seq_len)}, but is {shape_list(global_attn_scores)}.",
)
global_attn_scores = tf.reshape(
global_attn_scores,
(batch_size, self.num_heads, max_num_global_attn_indices, seq_len),
)
global_attn_scores_trans = tf.transpose(global_attn_scores, (0, 2, 1, 3))
mask_shape = (shape_list(is_local_index_no_global_attn_nonzero)[0],) + tuple(
shape_list(global_attn_scores_trans)[-2:]
)
global_attn_mask = tf.ones(mask_shape) * -10000.0
global_attn_mask = tf.cast(global_attn_mask, dtype=global_attn_scores_trans.dtype)
# scatter mask
global_attn_scores_trans = tf.tensor_scatter_nd_update(
global_attn_scores_trans,
is_local_index_no_global_attn_nonzero,
global_attn_mask,
)
global_attn_scores = tf.transpose(global_attn_scores_trans, (0, 2, 1, 3))
# mask global attn scores
attn_mask = tf.tile(is_index_masked[:, None, None, :], (1, shape_list(global_attn_scores)[1], 1, 1))
global_attn_scores = tf.where(attn_mask, -10000.0, global_attn_scores)
global_attn_scores = tf.reshape(
global_attn_scores,
(batch_size * self.num_heads, max_num_global_attn_indices, seq_len),
)
# compute global attn probs
global_attn_probs_float = tf.nn.softmax(global_attn_scores, axis=-1)
# apply layer head maskin
if layer_head_mask is not None:
if tf.executing_eagerly():
tf.debugging.assert_equal(
shape_list(layer_head_mask),
[self.num_heads],
message=f"Head mask for a single layer should be of size {(self.num_heads)}, but is {shape_list(layer_head_mask)}",
)
global_attn_probs_float = tf.reshape(layer_head_mask, (1, -1, 1, 1)) * tf.reshape(
global_attn_probs_float, (batch_size, self.num_heads, max_num_global_attn_indices, seq_len)
)
global_attn_probs_float = tf.reshape(
global_attn_probs_float, (batch_size * self.num_heads, max_num_global_attn_indices, seq_len)
)
# dropout
global_attn_probs = self.global_dropout(global_attn_probs_float, training=training)
# global attn output
global_attn_output = tf.matmul(global_attn_probs, global_value_vectors)
if tf.executing_eagerly():
tf.debugging.assert_equal(
shape_list(global_attn_output),
[batch_size * self.num_heads, max_num_global_attn_indices, self.head_dim],
message=f"global_attn_output tensor has the wrong size. Size should be {(batch_size * self.num_heads, max_num_global_attn_indices, self.head_dim)}, but is {shape_list(global_attn_output)}.",
)
global_attn_output = tf.reshape(
global_attn_output,
(batch_size, self.num_heads, max_num_global_attn_indices, self.head_dim),
)
# get only non zero global attn output
nonzero_global_attn_output = tf.gather_nd(
tf.transpose(global_attn_output, (0, 2, 1, 3)),
is_local_index_global_attn_nonzero,
)
nonzero_global_attn_output = tf.reshape(
nonzero_global_attn_output,
(shape_list(is_local_index_global_attn_nonzero)[0], -1),
)
# overwrite values with global attention
attn_output = tf.tensor_scatter_nd_update(
attn_output, is_index_global_attn_nonzero, nonzero_global_attn_output
)
global_attn_probs = tf.reshape(
global_attn_probs, (batch_size, self.num_heads, max_num_global_attn_indices, seq_len)
)
return attn_output, global_attn_probs
def reshape_and_transpose(self, vector, batch_size):
return tf.reshape(
tf.transpose(
tf.reshape(vector, (batch_size, -1, self.num_heads, self.head_dim)),
(0, 2, 1, 3),
),
(batch_size * self.num_heads, -1, self.head_dim),
)
class TFLongformerAttention(tf.keras.layers.Layer):
def __init__(self, config, layer_id=0, **kwargs):
super().__init__(**kwargs)
self.self_attention = TFLongformerSelfAttention(config, layer_id, name="self")
self.dense_output = TFLongformerSelfOutput(config, name="output")
def prune_heads(self, heads):
raise NotImplementedError
def call(self, inputs, training=False):
(
hidden_states,
attention_mask,
layer_head_mask,
is_index_masked,
is_index_global_attn,
is_global_attn,
) = inputs
self_outputs = self.self_attention(
[hidden_states, attention_mask, layer_head_mask, is_index_masked, is_index_global_attn, is_global_attn],
training=training,
)
attention_output = self.dense_output(self_outputs[0], hidden_states, training=training)
outputs = (attention_output,) + self_outputs[1:]
return outputs
class TFLongformerLayer(tf.keras.layers.Layer):
def __init__(self, config, layer_id=0, **kwargs):
super().__init__(**kwargs)
self.attention = TFLongformerAttention(config, layer_id, name="attention")
self.intermediate = TFLongformerIntermediate(config, name="intermediate")
self.longformer_output = TFLongformerOutput(config, name="output")
def call(self, inputs, training=False):
(
hidden_states,
attention_mask,
layer_head_mask,
is_index_masked,
is_index_global_attn,
is_global_attn,
) = inputs
attention_outputs = self.attention(
[hidden_states, attention_mask, layer_head_mask, is_index_masked, is_index_global_attn, is_global_attn],
training=training,
)
attention_output = attention_outputs[0]
intermediate_output = self.intermediate(attention_output)
layer_output = self.longformer_output(intermediate_output, attention_output, training=training)
outputs = (layer_output,) + attention_outputs[1:] # add attentions if we output them
return outputs
class TFLongformerEncoder(tf.keras.layers.Layer):
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.output_hidden_states = config.output_hidden_states
self.output_attentions = config.output_attentions
self.layer = [
TFLongformerLayer(config, i, name="layer_._{}".format(i)) for i in range(config.num_hidden_layers)
]
def call(
self,
hidden_states,
attention_mask=None,
head_mask=None,
padding_len=0,
is_index_masked=None,
is_index_global_attn=None,
is_global_attn=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
training=False,
):
all_hidden_states = () if output_hidden_states else None
all_attentions = all_global_attentions = () if output_attentions else None
for idx, layer_module in enumerate(self.layer):
if output_hidden_states:
hidden_states_to_add = hidden_states[:, :-padding_len] if padding_len > 0 else hidden_states
all_hidden_states = all_hidden_states + (hidden_states_to_add,)
layer_outputs = layer_module(
[
hidden_states,
attention_mask,
head_mask[idx] if head_mask is not None else None,
is_index_masked,
is_index_global_attn,
is_global_attn,
],
training=training,
)
hidden_states = layer_outputs[0]
if output_attentions:
# bzs x seq_len x num_attn_heads x (num_global_attn + attention_window_len + 1) => bzs x num_attn_heads x seq_len x (num_global_attn + attention_window_len + 1)
all_attentions = all_attentions + (tf.transpose(layer_outputs[1], (0, 2, 1, 3)),)
# bzs x num_attn_heads x num_global_attn x seq_len => bzs x num_attn_heads x seq_len x num_global_attn
all_global_attentions = all_global_attentions + (tf.transpose(layer_outputs[2], (0, 1, 3, 2)))
# Add last layer
if output_hidden_states:
hidden_states_to_add = hidden_states[:, :-padding_len] if padding_len > 0 else hidden_states
all_hidden_states = all_hidden_states + (hidden_states_to_add,)
if not return_dict:
return tuple(
v for v in [hidden_states, all_hidden_states, all_attentions, all_global_attentions] if v is not None
)
return TFLongformerBaseModelOutput(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_attentions,
global_attentions=all_global_attentions,
)
@keras_serializable
class TFLongformerMainLayer(tf.keras.layers.Layer):
config_class = LongformerConfig
def __init__(self, config, add_pooling_layer=True, **kwargs):
super().__init__(**kwargs)
if isinstance(config.attention_window, int):
assert config.attention_window % 2 == 0, "`config.attention_window` has to be an even value"
assert config.attention_window > 0, "`config.attention_window` has to be positive"
config.attention_window = [config.attention_window] * config.num_hidden_layers # one value per layer
else:
assert len(config.attention_window) == config.num_hidden_layers, (
"`len(config.attention_window)` should equal `config.num_hidden_layers`. "
f"Expected {config.num_hidden_layers}, given {len(config.attention_window)}"
)
self.config = config
self.num_hidden_layers = config.num_hidden_layers
self.initializer_range = config.initializer_range
self.output_attentions = config.output_attentions
self.output_hidden_states = config.output_hidden_states
self.return_dict = config.use_return_dict
self.pad_token_id = config.pad_token_id
self.attention_window = config.attention_window
self.embeddings = TFLongformerEmbeddings(config, name="embeddings")
self.encoder = TFLongformerEncoder(config, name="encoder")
self.pooler = TFLongformerPooler(config, name="pooler") if add_pooling_layer else None
def get_input_embeddings(self):
return self.embeddings
def set_input_embeddings(self, value):
self.embeddings.weight = value
self.embeddings.vocab_size = shape_list(value)[0]
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
raise NotImplementedError
def call(
self,
input_ids=None,
attention_mask=None,
head_mask=None,
global_attention_mask=None,
token_type_ids=None,
position_ids=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
training=False,
**kwargs,
):
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
head_mask=head_mask,
global_attention_mask=global_attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
kwargs_call=kwargs,
)
if inputs["input_ids"] is not None and inputs["inputs_embeds"] is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif inputs["input_ids"] is not None:
input_shape = shape_list(inputs["input_ids"])
elif inputs["inputs_embeds"] is not None:
input_shape = shape_list(inputs["inputs_embeds"])[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
if inputs["attention_mask"] is None:
inputs["attention_mask"] = tf.fill(input_shape, 1)
if inputs["token_type_ids"] is None:
inputs["token_type_ids"] = tf.fill(input_shape, 0)
# merge `global_attention_mask` and `attention_mask`
if inputs["global_attention_mask"] is not None:
inputs["attention_mask"] = self._merge_to_attention_mask(
inputs["attention_mask"], inputs["global_attention_mask"]
)
(
padding_len,
inputs["input_ids"],
inputs["attention_mask"],
inputs["token_type_ids"],
inputs["position_ids"],
inputs["inputs_embeds"],
) = self._pad_to_window_size(
input_ids=inputs["input_ids"],
attention_mask=inputs["attention_mask"],
token_type_ids=inputs["token_type_ids"],
position_ids=inputs["position_ids"],
inputs_embeds=inputs["inputs_embeds"],
pad_token_id=self.pad_token_id,
)
# is index masked or global attention
is_index_masked = tf.math.less(inputs["attention_mask"], 1)
is_index_global_attn = tf.math.greater(inputs["attention_mask"], 1)
is_global_attn = tf.math.reduce_any(is_index_global_attn)
# We create a 3D attention mask from a 2D tensor mask.
# Sizes are [batch_size, to_seq_length, 1, 1]
# So we can broadcast to [batch_size, num_heads, from_seq_length, to_seq_length]
# this attention mask is more simple than the triangular masking of causal attention
# used in OpenAI GPT, we just need to prepare the broadcast dimension here.
attention_mask_shape = shape_list(inputs["attention_mask"])
extended_attention_mask = tf.reshape(
inputs["attention_mask"], (attention_mask_shape[0], attention_mask_shape[1], 1, 1)
)
# Since attention_mask is 1.0 for positions we want to locall attend locally and 0.0 for
# masked and global attn positions, this operation will create a tensor which is 0.0 for
# positions we want to attend and -10000.0 for masked positions.
# Since we are adding it to the raw scores before the softmax, this is
# effectively the same as removing these entirely.
extended_attention_mask = tf.cast(tf.math.abs(1 - extended_attention_mask), tf.dtypes.float32) * -10000.0
embedding_output = self.embeddings(
inputs["input_ids"],
inputs["position_ids"],
inputs["token_type_ids"],
inputs["inputs_embeds"],
training=inputs["training"],
)
encoder_outputs = self.encoder(
embedding_output,
attention_mask=extended_attention_mask,
head_mask=head_mask,
padding_len=padding_len,
is_index_masked=is_index_masked,
is_index_global_attn=is_index_global_attn,
is_global_attn=is_global_attn,
output_attentions=inputs["output_attentions"],
output_hidden_states=inputs["output_hidden_states"],
return_dict=inputs["return_dict"],
training=inputs["training"],
)
sequence_output = encoder_outputs[0]
pooled_output = self.pooler(sequence_output) if self.pooler is not None else None
# undo padding
if padding_len > 0:
# unpad `sequence_output` because the calling function is expecting a length == input_ids.size(1)
sequence_output = sequence_output[:, :-padding_len]
if not inputs["return_dict"]:
return (
sequence_output,
pooled_output,
) + encoder_outputs[1:]
return TFLongformerBaseModelOutputWithPooling(
last_hidden_state=sequence_output,
pooler_output=pooled_output,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
global_attentions=encoder_outputs.global_attentions,
)
def _pad_to_window_size(
self,
input_ids,
attention_mask,
token_type_ids,
position_ids,
inputs_embeds,
pad_token_id,
):
"""A helper function to pad tokens and mask to work with implementation of Longformer selfattention."""
# padding
attention_window = (
self.attention_window if isinstance(self.attention_window, int) else max(self.attention_window)
)
assert attention_window % 2 == 0, f"`attention_window` should be an even value. Given {attention_window}"
input_shape = shape_list(input_ids) if input_ids is not None else shape_list(inputs_embeds)
batch_size, seq_len = input_shape[:2]
padding_len = (attention_window - seq_len % attention_window) % attention_window
if padding_len > 0:
logger.info(
"Input ids are automatically padded from {} to {} to be a multiple of `config.attention_window`: {}".format(
seq_len, seq_len + padding_len, attention_window
)
)
paddings = tf.convert_to_tensor([[0, 0], [0, padding_len]])
if input_ids is not None:
input_ids = tf.pad(input_ids, paddings, constant_values=pad_token_id)
if position_ids is not None:
# pad with position_id = pad_token_id as in modeling_roberta.RobertaEmbeddings
position_ids = tf.pad(position_ids, paddings, constant_values=pad_token_id)
if inputs_embeds is not None:
def pad_embeddings():
input_ids_padding = tf.fill((batch_size, padding_len), self.pad_token_id)
inputs_embeds_padding = self.embeddings(input_ids_padding)
return tf.concat([inputs_embeds, inputs_embeds_padding], axis=-2)
inputs_embeds = tf.cond(tf.math.greater(padding_len, 0), pad_embeddings, lambda: inputs_embeds)
attention_mask = tf.pad(attention_mask, paddings, constant_values=False) # no attention on the padding tokens
token_type_ids = tf.pad(token_type_ids, paddings, constant_values=0) # pad with token_type_id = 0
return (
padding_len,
input_ids,
attention_mask,
token_type_ids,
position_ids,
inputs_embeds,
)
@staticmethod
def _merge_to_attention_mask(attention_mask: tf.Tensor, global_attention_mask: tf.Tensor):
# longformer self attention expects attention mask to have 0 (no attn), 1 (local attn), 2 (global attn)
# (global_attention_mask + 1) => 1 for local attention, 2 for global attention
# => final attention_mask => 0 for no attention, 1 for local attention 2 for global attention
if attention_mask is not None:
attention_mask = attention_mask * (global_attention_mask + 1)
else:
# simply use `global_attention_mask` as `attention_mask`
# if no `attention_mask` is given
attention_mask = global_attention_mask + 1
return attention_mask
class TFLongformerPreTrainedModel(TFPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = LongformerConfig
base_model_prefix = "longformer"
@property
def dummy_inputs(self):
input_ids = tf.convert_to_tensor([[7, 6, 0, 0, 1], [1, 2, 3, 0, 0], [0, 0, 0, 4, 5]])
# make sure global layers are initialized
attention_mask = tf.convert_to_tensor([[1, 1, 0, 0, 1], [1, 1, 1, 0, 0], [1, 0, 0, 1, 1]])
global_attention_mask = tf.convert_to_tensor([[0, 0, 0, 0, 1], [0, 0, 1, 0, 0], [0, 0, 0, 0, 1]])
return {
"input_ids": input_ids,
"attention_mask": attention_mask,
"global_attention_mask": global_attention_mask,
}
@tf.function(
input_signature=[
{
"input_ids": tf.TensorSpec((None, None), tf.int32, name="input_ids"),
"attention_mask": tf.TensorSpec((None, None), tf.int32, name="attention_mask"),
}
]
)
def serving(self, inputs):
output = self.call(inputs)
return self.serving_output(output)
LONGFORMER_START_DOCSTRING = r"""
This model inherits from :class:`~transformers.TFPreTrainedModel`. Check the superclass documentation for the
generic methods the library implements for all its model (such as downloading or saving, resizing the input
embeddings, pruning heads etc.)
This model is also a `tf.keras.Model <https://www.tensorflow.org/api_docs/python/tf/keras/Model>`__ subclass. Use
it as a regular TF 2.0 Keras Model and refer to the TF 2.0 documentation for all matter related to general usage
and behavior.
.. note::
TF 2.0 models accepts two formats as inputs:
- having all inputs as keyword arguments (like PyTorch models), or
- having all inputs as a list, tuple or dict in the first positional arguments.
This second option is useful when using :meth:`tf.keras.Model.fit` method which currently requires having all
the tensors in the first argument of the model call function: :obj:`model(inputs)`.
If you choose this second option, there are three possibilities you can use to gather all the input Tensors in
the first positional argument :
- a single Tensor with :obj:`input_ids` only and nothing else: :obj:`model(inputs_ids)`
- a list of varying length with one or several input Tensors IN THE ORDER given in the docstring:
:obj:`model([input_ids, attention_mask])` or :obj:`model([input_ids, attention_mask, token_type_ids])`
- a dictionary with one or several input Tensors associated to the input names given in the docstring:
:obj:`model({"input_ids": input_ids, "token_type_ids": token_type_ids})`
Parameters:
config (:class:`~transformers.LongformerConfig`): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the :meth:`~transformers.PreTrainedModel.from_pretrained` method to load the model
weights.
"""
LONGFORMER_INPUTS_DOCSTRING = r"""
Args:
input_ids (:obj:`tf.Tensor` of shape :obj:`({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using :class:`~transformers.LongformerTokenizer`. See
:func:`transformers.PreTrainedTokenizer.__call__` and :func:`transformers.PreTrainedTokenizer.encode` for
details.
`What are input IDs? <../glossary.html#input-ids>`__
attention_mask (:obj:`tf.Tensor` of shape :obj:`({0})`, `optional`):
Mask to avoid performing attention on padding token indices. Mask values selected in ``[0, 1]``:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
`What are attention masks? <../glossary.html#attention-mask>`__
head_mask (:obj:`tf.Tensor` of shape :obj:`(encoder_layers, encoder_attention_heads)`, `optional`):
Mask to nullify selected heads of the attention modules. Mask values selected in ``[0, 1]``:
- 1 indicates the head is **not masked**,
- 0 indicates the heas is **masked**.
global_attention_mask (:obj:`tf.Tensor` of shape :obj:`({0})`, `optional`):
Mask to decide the attention given on each token, local attention or global attention. Tokens with global
attention attends to all other tokens, and all other tokens attend to them. This is important for
task-specific finetuning because it makes the model more flexible at representing the task. For example,
for classification, the <s> token should be given global attention. For QA, all question tokens should also
have global attention. Please refer to the `Longformer paper <https://arxiv.org/abs/2004.05150>`__ for more
details. Mask values selected in ``[0, 1]``:
- 0 for local attention (a sliding window attention),
- 1 for global attention (tokens that attend to all other tokens, and all other tokens attend to them).
token_type_ids (:obj:`tf.Tensor` of shape :obj:`({0})`, `optional`):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in ``[0,
1]``:
- 0 corresponds to a `sentence A` token,
- 1 corresponds to a `sentence B` token.
`What are token type IDs? <../glossary.html#token-type-ids>`__
position_ids (:obj:`tf.Tensor` of shape :obj:`({0})`, `optional`):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range ``[0,
config.max_position_embeddings - 1]``.
`What are position IDs? <../glossary.html#position-ids>`__
inputs_embeds (:obj:`tf.Tensor` of shape :obj:`({0}, hidden_size)`, `optional`):
Optionally, instead of passing :obj:`input_ids` you can choose to directly pass an embedded representation.
This is useful if you want more control over how to convert :obj:`input_ids` indices into associated
vectors than the model's internal embedding lookup matrix.
output_attentions (:obj:`bool`, `optional`):
Whether or not to return the attentions tensors of all attention layers. See ``attentions`` under returned
tensors for more detail. This argument can be used only in eager mode, in graph mode the value in the
config will be used instead.
output_hidden_states (:obj:`bool`, `optional`):
Whether or not to return the hidden states of all layers. See ``hidden_states`` under returned tensors for
more detail. This argument can be used only in eager mode, in graph mode the value in the config will be
used instead.
return_dict (:obj:`bool`, `optional`):
Whether or not to return a :class:`~transformers.file_utils.ModelOutput` instead of a plain tuple. This
argument can be used in eager mode, in graph mode the value will always be set to True.
training (:obj:`bool`, `optional`, defaults to :obj:`False`):
Whether or not to use the model in training mode (some modules like dropout modules have different
behaviors between training and evaluation).
"""
@add_start_docstrings(
"The bare Longformer Model outputting raw hidden-states without any specific head on top.",
LONGFORMER_START_DOCSTRING,
)
class TFLongformerModel(TFLongformerPreTrainedModel):
"""
This class copies code from :class:`~transformers.TFRobertaModel` and overwrites standard self-attention with
longformer self-attention to provide the ability to process long sequences following the self-attention approach
described in `Longformer: the Long-Document Transformer <https://arxiv.org/abs/2004.05150>`__ by Iz Beltagy,
Matthew E. Peters, and Arman Cohan. Longformer self-attention combines a local (sliding window) and global
attention to extend to long documents without the O(n^2) increase in memory and compute.
The self-attention module :obj:`TFLongformerSelfAttention` implemented here supports the combination of local and
global attention but it lacks support for autoregressive attention and dilated attention. Autoregressive and
dilated attention are more relevant for autoregressive language modeling than finetuning on downstream tasks.
Future release will add support for autoregressive attention, but the support for dilated attention requires a
custom CUDA kernel to be memory and compute efficient.
"""
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.longformer = TFLongformerMainLayer(config, name="longformer")
@add_start_docstrings_to_model_forward(LONGFORMER_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
def call(
self,
input_ids=None,
attention_mask=None,
head_mask=None,
global_attention_mask=None,
token_type_ids=None,
position_ids=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
training=False,
**kwargs,
):
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
head_mask=head_mask,
global_attention_mask=global_attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
kwargs_call=kwargs,
)
outputs = self.longformer(
input_ids=inputs["input_ids"],
attention_mask=inputs["attention_mask"],
head_mask=inputs["head_mask"],
global_attention_mask=inputs["global_attention_mask"],
token_type_ids=inputs["token_type_ids"],
position_ids=inputs["position_ids"],
inputs_embeds=inputs["inputs_embeds"],
output_attentions=inputs["output_attentions"],
output_hidden_states=inputs["output_hidden_states"],
return_dict=inputs["return_dict"],
training=inputs["training"],
)
return outputs
def serving_output(self, output):
hs = tf.convert_to_tensor(output.hidden_states) if self.config.output_hidden_states else None
attns = tf.convert_to_tensor(output.attentions) if self.config.output_attentions else None
g_attns = tf.convert_to_tensor(output.global_attentions) if self.config.output_attentions else None
return TFLongformerBaseModelOutputWithPooling(
last_hidden_state=output.last_hidden_state,
pooler_output=output.pooler_output,
hidden_states=hs,
attentions=attns,
global_attentions=g_attns,
)
@add_start_docstrings(
"""Longformer Model with a `language modeling` head on top. """,
LONGFORMER_START_DOCSTRING,
)
class TFLongformerForMaskedLM(TFLongformerPreTrainedModel, TFMaskedLanguageModelingLoss):
# names with a '.' represents the authorized unexpected/missing layers when a TF model is loaded from a PT model
_keys_to_ignore_on_load_unexpected = [r"pooler"]
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.longformer = TFLongformerMainLayer(config, add_pooling_layer=False, name="longformer")
self.lm_head = TFLongformerLMHead(config, self.longformer.embeddings, name="lm_head")
def get_lm_head(self):
return self.lm_head
def get_prefix_bias_name(self):
warnings.warn("The method get_prefix_bias_name is deprecated. Please use `get_bias` instead.", FutureWarning)
return self.name + "/" + self.lm_head.name
@add_start_docstrings_to_model_forward(LONGFORMER_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFLongformerMaskedLMOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids=None,
attention_mask=None,
head_mask=None,
global_attention_mask=None,
token_type_ids=None,
position_ids=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
labels=None,
training=False,
**kwargs,
):
r"""
labels (:obj:`tf.Tensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Labels for computing the masked language modeling loss. Indices should be in ``[-100, 0, ...,
config.vocab_size]`` (see ``input_ids`` docstring) Tokens with indices set to ``-100`` are ignored
(masked), the loss is only computed for the tokens with labels in ``[0, ..., config.vocab_size]``
"""
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
head_mask=head_mask,
global_attention_mask=global_attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
labels=labels,
training=training,
kwargs_call=kwargs,
)
outputs = self.longformer(
input_ids=inputs["input_ids"],
attention_mask=inputs["attention_mask"],
head_mask=inputs["head_mask"],
global_attention_mask=inputs["global_attention_mask"],
token_type_ids=inputs["token_type_ids"],
position_ids=inputs["position_ids"],
inputs_embeds=inputs["inputs_embeds"],
output_attentions=inputs["output_attentions"],
output_hidden_states=inputs["output_hidden_states"],
return_dict=inputs["return_dict"],
training=inputs["training"],
)
sequence_output = outputs[0]
prediction_scores = self.lm_head(sequence_output, training=inputs["training"])
loss = None if inputs["labels"] is None else self.compute_loss(inputs["labels"], prediction_scores)
if not inputs["return_dict"]:
output = (prediction_scores,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TFLongformerMaskedLMOutput(
loss=loss,
logits=prediction_scores,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
global_attentions=outputs.global_attentions,
)
def serving_output(self, output):
hs = tf.convert_to_tensor(output.hidden_states) if self.config.output_hidden_states else None
attns = tf.convert_to_tensor(output.attentions) if self.config.output_attentions else None
g_attns = tf.convert_to_tensor(output.global_attentions) if self.config.output_attentions else None
return TFLongformerMaskedLMOutput(
logits=output.logits, hidden_states=hs, attentions=attns, global_attentions=g_attns
)
@add_start_docstrings(
"""
Longformer Model with a span classification head on top for extractive question-answering tasks like SQuAD /
TriviaQA (a linear layer on top of the hidden-states output to compute `span start logits` and `span end logits`).
""",
LONGFORMER_START_DOCSTRING,
)
class TFLongformerForQuestionAnswering(TFLongformerPreTrainedModel, TFQuestionAnsweringLoss):
# names with a '.' represents the authorized unexpected/missing layers when a TF model is loaded from a PT model
_keys_to_ignore_on_load_unexpected = [r"pooler"]
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.num_labels = config.num_labels
self.longformer = TFLongformerMainLayer(config, add_pooling_layer=False, name="longformer")
self.qa_outputs = tf.keras.layers.Dense(
config.num_labels,
kernel_initializer=get_initializer(config.initializer_range),
name="qa_outputs",
)
@add_start_docstrings_to_model_forward(LONGFORMER_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint="allenai/longformer-large-4096-finetuned-triviaqa",
output_type=TFLongformerQuestionAnsweringModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids=None,
attention_mask=None,
head_mask=None,
global_attention_mask=None,
token_type_ids=None,
position_ids=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
start_positions=None,
end_positions=None,
training=False,
**kwargs,
):
r"""
start_positions (:obj:`tf.Tensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for position (index) of the start of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
end_positions (:obj:`tf.Tensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for position (index) of the end of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (`sequence_length`). Position outside of the sequence
are not taken into account for computing the loss.
"""
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
head_mask=head_mask,
global_attention_mask=global_attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
start_positions=start_positions,
end_positions=end_positions,
training=training,
kwargs_call=kwargs,
)
# set global attention on question tokens
if inputs["global_attention_mask"] is None and inputs["input_ids"] is not None:
if (
shape_list(tf.where(inputs["input_ids"] == self.config.sep_token_id))[0]
!= 3 * shape_list(inputs["input_ids"])[0]
):
logger.warning(
f"There should be exactly three separator tokens: {self.config.sep_token_id} in every sample for questions answering. You might also consider to set `global_attention_mask` manually in the forward function to avoid this. This is most likely an error. The global attention is disabled for this forward pass."
)
inputs["global_attention_mask"] = tf.fill(shape_list(inputs["input_ids"]), value=0)
else:
logger.info("Initializing global attention on question tokens...")
# put global attention on all tokens until `config.sep_token_id` is reached
sep_token_indices = tf.where(inputs["input_ids"] == self.config.sep_token_id)
sep_token_indices = tf.cast(sep_token_indices, dtype=inputs["input_ids"].dtype)
inputs["global_attention_mask"] = _compute_global_attention_mask(
shape_list(inputs["input_ids"]), sep_token_indices
)
outputs = self.longformer(
input_ids=inputs["input_ids"],
attention_mask=inputs["attention_mask"],
head_mask=inputs["head_mask"],
global_attention_mask=inputs["global_attention_mask"],
token_type_ids=inputs["token_type_ids"],
position_ids=inputs["position_ids"],
inputs_embeds=inputs["inputs_embeds"],
output_attentions=inputs["output_attentions"],
output_hidden_states=inputs["output_hidden_states"],
return_dict=inputs["return_dict"],
training=inputs["training"],
)
sequence_output = outputs[0]
logits = self.qa_outputs(sequence_output)
start_logits, end_logits = tf.split(logits, 2, axis=-1)
start_logits = tf.squeeze(start_logits, axis=-1)
end_logits = tf.squeeze(end_logits, axis=-1)
loss = None
if inputs["start_positions"] is not None and inputs["end_positions"] is not None:
labels = {"start_position": inputs["start_positions"]}
labels["end_position"] = inputs["end_positions"]
loss = self.compute_loss(labels, (start_logits, end_logits))
if not inputs["return_dict"]:
output = (start_logits, end_logits) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TFLongformerQuestionAnsweringModelOutput(
loss=loss,
start_logits=start_logits,
end_logits=end_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
global_attentions=outputs.global_attentions,
)
def serving_output(self, output):
hs = tf.convert_to_tensor(output.hidden_states) if self.config.output_hidden_states else None
attns = tf.convert_to_tensor(output.attentions) if self.config.output_attentions else None
g_attns = tf.convert_to_tensor(output.global_attentions) if self.config.output_attentions else None
return TFLongformerQuestionAnsweringModelOutput(
start_logits=output.start_logits,
end_logits=output.end_logits,
hidden_states=hs,
attentions=attns,
global_attentions=g_attns,
)
class TFLongformerClassificationHead(tf.keras.layers.Layer):
"""Head for sentence-level classification tasks."""
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(
config.hidden_size,
kernel_initializer=get_initializer(config.initializer_range),
activation="tanh",
name="dense",
)
self.dropout = tf.keras.layers.Dropout(config.hidden_dropout_prob)
self.out_proj = tf.keras.layers.Dense(
config.num_labels, kernel_initializer=get_initializer(config.initializer_range), name="out_proj"
)
def call(self, hidden_states, training=False):
hidden_states = hidden_states[:, 0, :] # take <s> token (equiv. to [CLS])
hidden_states = self.dropout(hidden_states, training=training)
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states, training=training)
output = self.out_proj(hidden_states)
return output
@add_start_docstrings(
"""
Longformer Model transformer with a sequence classification/regression head on top (a linear layer on top of the
pooled output) e.g. for GLUE tasks.
""",
LONGFORMER_START_DOCSTRING,
)
class TFLongformerForSequenceClassification(TFLongformerPreTrainedModel, TFSequenceClassificationLoss):
# names with a '.' represents the authorized unexpected/missing layers when a TF model is loaded from a PT model
_keys_to_ignore_on_load_unexpected = [r"pooler"]
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.num_labels = config.num_labels
self.longformer = TFLongformerMainLayer(config, add_pooling_layer=False, name="longformer")
self.classifier = TFLongformerClassificationHead(config, name="classifier")
@add_start_docstrings_to_model_forward(LONGFORMER_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFLongformerSequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids=None,
attention_mask=None,
head_mask=None,
token_type_ids=None,
position_ids=None,
global_attention_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
labels=None,
training=False,
**kwargs,
):
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
head_mask=head_mask,
global_attention_mask=global_attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
labels=labels,
training=training,
kwargs_call=kwargs,
)
if inputs["global_attention_mask"] is None and inputs["input_ids"] is not None:
logger.info("Initializing global attention on CLS token...")
# global attention on cls token
inputs["global_attention_mask"] = tf.zeros_like(inputs["input_ids"])
updates = tf.ones(shape_list(inputs["input_ids"])[0], dtype=tf.int32)
indices = tf.pad(
tensor=tf.expand_dims(tf.range(shape_list(inputs["input_ids"])[0]), axis=1),
paddings=[[0, 0], [0, 1]],
constant_values=0,
)
inputs["global_attention_mask"] = tf.tensor_scatter_nd_update(
inputs["global_attention_mask"],
indices,
updates,
)
outputs = self.longformer(
input_ids=inputs["input_ids"],
attention_mask=inputs["attention_mask"],
head_mask=inputs["head_mask"],
global_attention_mask=inputs["global_attention_mask"],
token_type_ids=inputs["token_type_ids"],
position_ids=inputs["position_ids"],
inputs_embeds=inputs["inputs_embeds"],
output_attentions=inputs["output_attentions"],
output_hidden_states=inputs["output_hidden_states"],
return_dict=inputs["return_dict"],
training=inputs["training"],
)
sequence_output = outputs[0]
logits = self.classifier(sequence_output)
loss = None if inputs["labels"] is None else self.compute_loss(inputs["labels"], logits)
if not inputs["return_dict"]:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TFLongformerSequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
global_attentions=outputs.global_attentions,
)
def serving_output(self, output):
hs = tf.convert_to_tensor(output.hidden_states) if self.config.output_hidden_states else None
attns = tf.convert_to_tensor(output.attentions) if self.config.output_attentions else None
g_attns = tf.convert_to_tensor(output.global_attentions) if self.config.output_attentions else None
return TFLongformerSequenceClassifierOutput(
logits=output.logits, hidden_states=hs, attentions=attns, global_attentions=g_attns
)
@add_start_docstrings(
"""
Longformer Model with a multiple choice classification head on top (a linear layer on top of the pooled output and
a softmax) e.g. for RocStories/SWAG tasks.
""",
LONGFORMER_START_DOCSTRING,
)
class TFLongformerForMultipleChoice(TFLongformerPreTrainedModel, TFMultipleChoiceLoss):
# names with a '.' represents the authorized unexpected/missing layers when a TF model is loaded from a PT model
_keys_to_ignore_on_load_missing = [r"dropout"]
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.longformer = TFLongformerMainLayer(config, name="longformer")
self.dropout = tf.keras.layers.Dropout(config.hidden_dropout_prob)
self.classifier = tf.keras.layers.Dense(
1, kernel_initializer=get_initializer(config.initializer_range), name="classifier"
)
@property
def dummy_inputs(self):
input_ids = tf.convert_to_tensor(MULTIPLE_CHOICE_DUMMY_INPUTS)
# make sure global layers are initialized
global_attention_mask = tf.convert_to_tensor([[[0, 0, 0, 1], [0, 0, 0, 1]]] * 2)
return {"input_ids": input_ids, "global_attention_mask": global_attention_mask}
@add_start_docstrings_to_model_forward(
LONGFORMER_INPUTS_DOCSTRING.format("batch_size, num_choices, sequence_length")
)
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFLongformerMultipleChoiceModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids=None,
attention_mask=None,
head_mask=None,
token_type_ids=None,
position_ids=None,
global_attention_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
labels=None,
training=False,
**kwargs,
):
r"""
labels (:obj:`tf.Tensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for computing the multiple choice classification loss. Indices should be in ``[0, ...,
num_choices]`` where :obj:`num_choices` is the size of the second dimension of the input tensors. (See
:obj:`input_ids` above)
"""
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
head_mask=head_mask,
global_attention_mask=global_attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
labels=labels,
training=training,
kwargs_call=kwargs,
)
if inputs["input_ids"] is not None:
num_choices = shape_list(inputs["input_ids"])[1]
seq_length = shape_list(inputs["input_ids"])[2]
else:
num_choices = shape_list(inputs["inputs_embeds"])[1]
seq_length = shape_list(inputs["inputs_embeds"])[2]
flat_input_ids = tf.reshape(inputs["input_ids"], (-1, seq_length)) if inputs["input_ids"] is not None else None
flat_attention_mask = (
tf.reshape(inputs["attention_mask"], (-1, seq_length)) if inputs["attention_mask"] is not None else None
)
flat_token_type_ids = (
tf.reshape(inputs["token_type_ids"], (-1, seq_length)) if inputs["token_type_ids"] is not None else None
)
flat_position_ids = (
tf.reshape(inputs["position_ids"], (-1, seq_length)) if inputs["position_ids"] is not None else None
)
flat_global_attention_mask = (
tf.reshape(inputs["global_attention_mask"], (-1, shape_list(inputs["global_attention_mask"])[-1]))
if inputs["global_attention_mask"] is not None
else None
)
flat_inputs_embeds = (
tf.reshape(inputs["inputs_embeds"], (-1, seq_length, shape_list(inputs["inputs_embeds"])[3]))
if inputs["inputs_embeds"] is not None
else None
)
outputs = self.longformer(
flat_input_ids,
position_ids=flat_position_ids,
token_type_ids=flat_token_type_ids,
attention_mask=flat_attention_mask,
head_mask=head_mask,
global_attention_mask=flat_global_attention_mask,
inputs_embeds=flat_inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=inputs["return_dict"],
training=inputs["training"],
)
pooled_output = outputs[1]
pooled_output = self.dropout(pooled_output)
logits = self.classifier(pooled_output)
reshaped_logits = tf.reshape(logits, (-1, num_choices))
loss = None if inputs["labels"] is None else self.compute_loss(inputs["labels"], reshaped_logits)
if not inputs["return_dict"]:
output = (reshaped_logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TFLongformerMultipleChoiceModelOutput(
loss=loss,
logits=reshaped_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
global_attentions=outputs.global_attentions,
)
@tf.function(
input_signature=[
{
"input_ids": tf.TensorSpec((None, None, None), tf.int32, name="input_ids"),
"attention_mask": tf.TensorSpec((None, None, None), tf.int32, name="attention_mask"),
}
]
)
def serving(self, inputs):
output = self.call(inputs)
return self.serving_output(output)
def serving_output(self, output):
hs = tf.convert_to_tensor(output.hidden_states) if self.config.output_hidden_states else None
attns = tf.convert_to_tensor(output.attentions) if self.config.output_attentions else None
g_attns = tf.convert_to_tensor(output.global_attentions) if self.config.output_attentions else None
return TFLongformerMultipleChoiceModelOutput(
logits=output.logits, hidden_states=hs, attentions=attns, global_attentions=g_attns
)
@add_start_docstrings(
"""
Longformer Model with a token classification head on top (a linear layer on top of the hidden-states output) e.g.
for Named-Entity-Recognition (NER) tasks.
""",
LONGFORMER_START_DOCSTRING,
)
class TFLongformerForTokenClassification(TFLongformerPreTrainedModel, TFTokenClassificationLoss):
# names with a '.' represents the authorized unexpected/missing layers when a TF model is loaded from a PT model
_keys_to_ignore_on_load_unexpected = [r"pooler"]
_keys_to_ignore_on_load_missing = [r"dropout"]
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.num_labels = config.num_labels
self.longformer = TFLongformerMainLayer(config=config, add_pooling_layer=False, name="longformer")
self.dropout = tf.keras.layers.Dropout(config.hidden_dropout_prob)
self.classifier = tf.keras.layers.Dense(
config.num_labels, kernel_initializer=get_initializer(config.initializer_range), name="classifier"
)
@add_start_docstrings_to_model_forward(LONGFORMER_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFLongformerTokenClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids=None,
attention_mask=None,
head_mask=None,
token_type_ids=None,
position_ids=None,
global_attention_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
labels=None,
training=False,
**kwargs,
):
r"""
labels (:obj:`tf.Tensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Labels for computing the token classification loss. Indices should be in ``[0, ..., config.num_labels -
1]``.
"""
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
head_mask=head_mask,
global_attention_mask=global_attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
labels=labels,
training=training,
kwargs_call=kwargs,
)
outputs = self.longformer(
input_ids=inputs["input_ids"],
attention_mask=inputs["attention_mask"],
head_mask=inputs["head_mask"],
global_attention_mask=inputs["global_attention_mask"],
token_type_ids=inputs["token_type_ids"],
position_ids=inputs["position_ids"],
inputs_embeds=inputs["inputs_embeds"],
output_attentions=inputs["output_attentions"],
output_hidden_states=inputs["output_hidden_states"],
return_dict=inputs["return_dict"],
training=inputs["training"],
)
sequence_output = outputs[0]
sequence_output = self.dropout(sequence_output)
logits = self.classifier(sequence_output)
loss = None if inputs["labels"] is None else self.compute_loss(inputs["labels"], logits)
if not inputs["return_dict"]:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TFLongformerTokenClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
global_attentions=outputs.global_attentions,
)
def serving_output(self, output):
hs = tf.convert_to_tensor(output.hidden_states) if self.config.output_hidden_states else None
attns = tf.convert_to_tensor(output.attentions) if self.config.output_attentions else None
g_attns = tf.convert_to_tensor(output.global_attentions) if self.config.output_attentions else None
return TFLongformerTokenClassifierOutput(
logits=output.logits, hidden_states=hs, attentions=attns, global_attentions=g_attns
)
|
AdaMix/src/transformers/models/longformer/modeling_tf_longformer.py/0
|
{
"file_path": "AdaMix/src/transformers/models/longformer/modeling_tf_longformer.py",
"repo_id": "AdaMix",
"token_count": 54705
}
| 56 |
# coding=utf-8
# Copyright 2021 The Facebook AI Research Team Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import os
from contextlib import contextmanager
from shutil import copyfile
from typing import Dict, List, Optional, Tuple
import sentencepiece as spm
from ...tokenization_utils import AddedToken, BatchEncoding, PreTrainedTokenizer
from ...utils import logging
logger = logging.get_logger(__name__)
SPIECE_UNDERLINE = "▁"
VOCAB_FILES_NAMES = {"vocab_file": "sentencepiece.bpe.model"}
PRETRAINED_VOCAB_FILES_MAP = {
"vocab_file": {
"facebook/mbart-large-50-one-to-many-mmt": "https://huggingface.co/facebook/mbart-large-50-one-to-many-mmt/resolve/main/sentencepiece.bpe.model",
}
}
PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES = {
"facebook/mbart-large-50-one-to-many-mmt": 1024,
}
# fmt: off
FAIRSEQ_LANGUAGE_CODES = ["ar_AR", "cs_CZ", "de_DE", "en_XX", "es_XX", "et_EE", "fi_FI", "fr_XX", "gu_IN", "hi_IN", "it_IT", "ja_XX", "kk_KZ", "ko_KR", "lt_LT", "lv_LV", "my_MM", "ne_NP", "nl_XX", "ro_RO", "ru_RU", "si_LK", "tr_TR", "vi_VN", "zh_CN", "af_ZA", "az_AZ", "bn_IN", "fa_IR", "he_IL", "hr_HR", "id_ID", "ka_GE", "km_KH", "mk_MK", "ml_IN", "mn_MN", "mr_IN", "pl_PL", "ps_AF", "pt_XX", "sv_SE", "sw_KE", "ta_IN", "te_IN", "th_TH", "tl_XX", "uk_UA", "ur_PK", "xh_ZA", "gl_ES", "sl_SI"]
# fmt: on
class MBart50Tokenizer(PreTrainedTokenizer):
"""
Construct a MBart50 tokenizer. Based on `SentencePiece <https://github.com/google/sentencepiece>`__.
This tokenizer inherits from :class:`~transformers.PreTrainedTokenizer` which contains most of the main methods.
Users should refer to this superclass for more information regarding those methods.
Args:
vocab_file (:obj:`str`):
Path to the vocabulary file.
src_lang (:obj:`str`, `optional`):
A string representing the source language.
tgt_lang (:obj:`str`, `optional`):
A string representing the target language.
eos_token (:obj:`str`, `optional`, defaults to :obj:`"</s>"`):
The end of sequence token.
sep_token (:obj:`str`, `optional`, defaults to :obj:`"</s>"`):
The separator token, which is used when building a sequence from multiple sequences, e.g. two sequences for
sequence classification or for a text and a question for question answering. It is also used as the last
token of a sequence built with special tokens.
cls_token (:obj:`str`, `optional`, defaults to :obj:`"<s>"`):
The classifier token which is used when doing sequence classification (classification of the whole sequence
instead of per-token classification). It is the first token of the sequence when built with special tokens.
unk_token (:obj:`str`, `optional`, defaults to :obj:`"<unk>"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
pad_token (:obj:`str`, `optional`, defaults to :obj:`"<pad>"`):
The token used for padding, for example when batching sequences of different lengths.
mask_token (:obj:`str`, `optional`, defaults to :obj:`"<mask>"`):
The token used for masking values. This is the token used when training this model with masked language
modeling. This is the token which the model will try to predict.
Examples::
>>> from transformers import MBart50Tokenizer
>>> tokenizer = MBart50Tokenizer.from_pretrained("facebook/mbart-large-50", src_lang="en_XX", tgt_lang="ro_RO")
>>> src_text = " UN Chief Says There Is No Military Solution in Syria"
>>> tgt_text = "Şeful ONU declară că nu există o soluţie militară în Siria"
>>> model_inputs = tokenizer(src_text, return_tensors="pt")
>>> with tokenizer.as_target_tokenizer():
... labels = tokenizer(tgt_text, return_tensors="pt").input_ids
>>> # model(**model_inputs, labels=labels) should work
"""
vocab_files_names = VOCAB_FILES_NAMES
max_model_input_sizes = PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES
pretrained_vocab_files_map = PRETRAINED_VOCAB_FILES_MAP
model_input_names = ["input_ids", "attention_mask"]
prefix_tokens: List[int] = []
suffix_tokens: List[int] = []
def __init__(
self,
vocab_file,
src_lang=None,
tgt_lang=None,
eos_token="</s>",
sep_token="</s>",
cls_token="<s>",
unk_token="<unk>",
pad_token="<pad>",
mask_token="<mask>",
**kwargs
):
# Mask token behave like a normal word, i.e. include the space before it
mask_token = AddedToken(mask_token, lstrip=True, rstrip=False) if isinstance(mask_token, str) else mask_token
super().__init__(
src_lang=src_lang,
tgt_lang=tgt_lang,
eos_token=eos_token,
unk_token=unk_token,
sep_token=sep_token,
cls_token=cls_token,
pad_token=pad_token,
mask_token=mask_token,
**kwargs,
)
self.sp_model = spm.SentencePieceProcessor()
self.sp_model.Load(str(vocab_file))
self.vocab_file = vocab_file
# Original fairseq vocab and spm vocab must be "aligned":
# Vocab | 0 | 1 | 2 | 3 | 4 | 5 | 6 | 7 | 8 | 9
# -------- | ------- | ------- | ------ | ------- | --- | --- | --- | ----- | ----- | ----
# fairseq | '<s>' | '<pad>' | '</s>' | '<unk>' | ',' | '.' | '▁' | 's' | '▁de' | '-'
# spm | '<unk>' | '<s>' | '</s>' | ',' | '.' | '▁' | 's' | '▁de' | '-' | '▁a'
# Mimic fairseq token-to-id alignment for the first 4 token
self.fairseq_tokens_to_ids = {"<s>": 0, "<pad>": 1, "</s>": 2, "<unk>": 3}
# The first "real" token "," has position 4 in the original fairseq vocab and position 3 in the spm vocab
self.fairseq_offset = 1
self.sp_model_size = len(self.sp_model)
self.lang_code_to_id = {
code: self.sp_model_size + i + self.fairseq_offset for i, code in enumerate(FAIRSEQ_LANGUAGE_CODES)
}
self.id_to_lang_code = {v: k for k, v in self.lang_code_to_id.items()}
self.fairseq_tokens_to_ids["<mask>"] = len(self.sp_model) + len(self.lang_code_to_id) + self.fairseq_offset
self.fairseq_tokens_to_ids.update(self.lang_code_to_id)
self.fairseq_ids_to_tokens = {v: k for k, v in self.fairseq_tokens_to_ids.items()}
self._additional_special_tokens = list(self.lang_code_to_id.keys())
self._src_lang = src_lang if src_lang is not None else "en_XX"
self.cur_lang_code_id = self.lang_code_to_id[self._src_lang]
self.tgt_lang = tgt_lang
self.set_src_lang_special_tokens(self._src_lang)
@property
def vocab_size(self) -> int:
return len(self.sp_model) + len(self.lang_code_to_id) + self.fairseq_offset + 1 # Plus 1 for the mask token
@property
def src_lang(self) -> str:
return self._src_lang
@src_lang.setter
def src_lang(self, new_src_lang: str) -> None:
self._src_lang = new_src_lang
self.set_src_lang_special_tokens(self._src_lang)
def __getstate__(self) -> Dict:
state = self.__dict__.copy()
state["sp_model"] = None
return state
def __setstate__(self, d: Dict) -> None:
self.__dict__ = d
self.sp_model = spm.SentencePieceProcessor()
self.sp_model.Load(self.vocab_file)
def get_vocab(self) -> Dict:
vocab = {self.convert_ids_to_tokens(i): i for i in range(self.vocab_size)}
vocab.update(self.added_tokens_encoder)
return vocab
def _tokenize(self, text: str) -> List[str]:
return self.sp_model.EncodeAsPieces(text)
def _convert_token_to_id(self, token: str) -> int:
""" Converts a token (str) in an id using the vocab. """
if token in self.fairseq_tokens_to_ids:
return self.fairseq_tokens_to_ids[token]
spm_id = self.sp_model.PieceToId(token)
# Need to return unknown token if the SP model returned 0
return spm_id + self.fairseq_offset if spm_id else self.unk_token_id
def _convert_id_to_token(self, index: int) -> str:
"""Converts an index (integer) in a token (str) using the vocab."""
if index in self.fairseq_ids_to_tokens:
return self.fairseq_ids_to_tokens[index]
return self.sp_model.IdToPiece(index - self.fairseq_offset)
def convert_tokens_to_string(self, tokens: List[str]) -> str:
"""Converts a sequence of tokens (strings for sub-words) in a single string."""
out_string = "".join(tokens).replace(SPIECE_UNDERLINE, " ").strip()
return out_string
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
if not os.path.isdir(save_directory):
logger.error("Vocabulary path ({}) should be a directory".format(save_directory))
return
out_vocab_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["vocab_file"]
)
if os.path.abspath(self.vocab_file) != os.path.abspath(out_vocab_file):
copyfile(self.vocab_file, out_vocab_file)
return (out_vocab_file,)
def get_special_tokens_mask(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None, already_has_special_tokens: bool = False
) -> List[int]:
"""
Retrieve sequence ids from a token list that has no special tokens added. This method is called when adding
special tokens using the tokenizer ``prepare_for_model`` method.
Args:
token_ids_0 (:obj:`List[int]`):
List of IDs.
token_ids_1 (:obj:`List[int]`, `optional`):
Optional second list of IDs for sequence pairs.
already_has_special_tokens (:obj:`bool`, `optional`, defaults to :obj:`False`):
Whether or not the token list is already formatted with special tokens for the model.
Returns:
:obj:`List[int]`: A list of integers in the range [0, 1]: 1 for a special token, 0 for a sequence token.
"""
if already_has_special_tokens:
if token_ids_1 is not None:
raise ValueError(
"You should not supply a second sequence if the provided sequence of "
"ids is already formatted with special tokens for the model."
)
return list(map(lambda x: 1 if x in [self.sep_token_id, self.cls_token_id] else 0, token_ids_0))
prefix_ones = [1] * len(self.prefix_tokens)
suffix_ones = [1] * len(self.suffix_tokens)
if token_ids_1 is None:
return prefix_ones + ([0] * len(token_ids_0)) + suffix_ones
return prefix_ones + ([0] * len(token_ids_0)) + ([0] * len(token_ids_1)) + suffix_ones
def build_inputs_with_special_tokens(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Build model inputs from a sequence or a pair of sequence for sequence classification tasks by concatenating and
adding special tokens. An MBART-50 sequence has the following format, where ``X`` represents the sequence:
- ``input_ids`` (for encoder) ``[src_lang_code] X [eos]``
- ``labels``: (for decoder) ``[tgt_lang_code] X [eos]``
BOS is never used. Pairs of sequences are not the expected use case, but they will be handled without a
separator.
Args:
token_ids_0 (:obj:`List[int]`):
List of IDs to which the special tokens will be added.
token_ids_1 (:obj:`List[int]`, `optional`):
Optional second list of IDs for sequence pairs.
Returns:
:obj:`List[int]`: List of `input IDs <../glossary.html#input-ids>`__ with the appropriate special tokens.
"""
if token_ids_1 is None:
return self.prefix_tokens + token_ids_0 + self.suffix_tokens
# We don't expect to process pairs, but leave the pair logic for API consistency
return self.prefix_tokens + token_ids_0 + token_ids_1 + self.suffix_tokens
def prepare_seq2seq_batch(
self,
src_texts: List[str],
src_lang: str = "en_XX",
tgt_texts: Optional[List[str]] = None,
tgt_lang: str = "ro_RO",
**kwargs,
) -> BatchEncoding:
self.src_lang = src_lang
self.tgt_lang = tgt_lang
return super().prepare_seq2seq_batch(src_texts, tgt_texts, **kwargs)
@contextmanager
def as_target_tokenizer(self):
"""
Temporarily sets the tokenizer for encoding the targets. Useful for tokenizer associated to
sequence-to-sequence models that need a slightly different processing for the labels.
"""
self.set_tgt_lang_special_tokens(self.tgt_lang)
yield
self.set_src_lang_special_tokens(self.src_lang)
def set_src_lang_special_tokens(self, src_lang: str) -> None:
"""Reset the special tokens to the source lang setting. prefix=[src_lang_code] and suffix=[eos]."""
self.cur_lang_code_id = self.lang_code_to_id[src_lang]
self.prefix_tokens = [self.cur_lang_code_id]
self.suffix_tokens = [self.eos_token_id]
def set_tgt_lang_special_tokens(self, tgt_lang: str) -> None:
"""Reset the special tokens to the target language setting. prefix=[tgt_lang_code] and suffix=[eos]."""
self.cur_lang_code_id = self.lang_code_to_id[tgt_lang]
self.prefix_tokens = [self.cur_lang_code_id]
self.suffix_tokens = [self.eos_token_id]
|
AdaMix/src/transformers/models/mbart/tokenization_mbart50.py/0
|
{
"file_path": "AdaMix/src/transformers/models/mbart/tokenization_mbart50.py",
"repo_id": "AdaMix",
"token_count": 6259
}
| 57 |
# coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" TF 2.0 MobileBERT model. """
import warnings
from dataclasses import dataclass
from typing import Dict, Optional, Tuple
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...file_utils import (
MULTIPLE_CHOICE_DUMMY_INPUTS,
ModelOutput,
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
replace_return_docstrings,
)
from ...modeling_tf_outputs import (
TFBaseModelOutput,
TFBaseModelOutputWithPooling,
TFMaskedLMOutput,
TFMultipleChoiceModelOutput,
TFNextSentencePredictorOutput,
TFQuestionAnsweringModelOutput,
TFSequenceClassifierOutput,
TFTokenClassifierOutput,
)
from ...modeling_tf_utils import (
TFMaskedLanguageModelingLoss,
TFMultipleChoiceLoss,
TFNextSentencePredictionLoss,
TFPreTrainedModel,
TFQuestionAnsweringLoss,
TFSequenceClassificationLoss,
TFTokenClassificationLoss,
get_initializer,
input_processing,
keras_serializable,
shape_list,
)
from ...utils import logging
from .configuration_mobilebert import MobileBertConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "google/mobilebert-uncased"
_CONFIG_FOR_DOC = "MobileBertConfig"
_TOKENIZER_FOR_DOC = "MobileBertTokenizer"
TF_MOBILEBERT_PRETRAINED_MODEL_ARCHIVE_LIST = [
"google/mobilebert-uncased",
# See all MobileBERT models at https://huggingface.co/models?filter=mobilebert
]
class TFMobileBertIntermediate(tf.keras.layers.Layer):
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(config.intermediate_size, name="dense")
if isinstance(config.hidden_act, str):
self.intermediate_act_fn = get_tf_activation(config.hidden_act)
else:
self.intermediate_act_fn = config.hidden_act
def call(self, hidden_states):
hidden_states = self.dense(hidden_states)
hidden_states = self.intermediate_act_fn(hidden_states)
return hidden_states
class TFLayerNorm(tf.keras.layers.LayerNormalization):
def __init__(self, feat_size, *args, **kwargs):
super().__init__(*args, **kwargs)
class TFNoNorm(tf.keras.layers.Layer):
def __init__(self, feat_size, epsilon=None, **kwargs):
super().__init__(**kwargs)
self.feat_size = feat_size
def build(self, input_shape):
self.bias = self.add_weight("bias", shape=[self.feat_size], initializer="zeros")
self.weight = self.add_weight("weight", shape=[self.feat_size], initializer="ones")
def call(self, inputs: tf.Tensor):
return inputs * self.weight + self.bias
NORM2FN = {"layer_norm": TFLayerNorm, "no_norm": TFNoNorm}
class TFMobileBertEmbeddings(tf.keras.layers.Layer):
"""Construct the embeddings from word, position and token_type embeddings."""
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.trigram_input = config.trigram_input
self.embedding_size = config.embedding_size
self.vocab_size = config.vocab_size
self.hidden_size = config.hidden_size
self.type_vocab_size = config.type_vocab_size
self.max_position_embeddings = config.max_position_embeddings
self.initializer_range = config.initializer_range
self.embeddings_sum = tf.keras.layers.Add()
self.embedding_transformation = tf.keras.layers.Dense(config.hidden_size, name="embedding_transformation")
# self.LayerNorm is not snake-cased to stick with TensorFlow model variable name and be able to load
# any TensorFlow checkpoint file
self.LayerNorm = NORM2FN[config.normalization_type](
config.hidden_size, epsilon=config.layer_norm_eps, name="LayerNorm"
)
self.dropout = tf.keras.layers.Dropout(rate=config.hidden_dropout_prob)
def build(self, input_shape):
with tf.name_scope("word_embeddings"):
self.weight = self.add_weight(
name="weight",
shape=[self.vocab_size, self.embedding_size],
initializer=get_initializer(initializer_range=self.initializer_range),
)
with tf.name_scope("token_type_embeddings"):
self.token_type_embeddings = self.add_weight(
name="embeddings",
shape=[self.type_vocab_size, self.hidden_size],
initializer=get_initializer(initializer_range=self.initializer_range),
)
with tf.name_scope("position_embeddings"):
self.position_embeddings = self.add_weight(
name="embeddings",
shape=[self.max_position_embeddings, self.hidden_size],
initializer=get_initializer(initializer_range=self.initializer_range),
)
super().build(input_shape)
def call(self, input_ids=None, position_ids=None, token_type_ids=None, inputs_embeds=None, training=False):
"""
Applies embedding based on inputs tensor.
Returns:
final_embeddings (:obj:`tf.Tensor`): output embedding tensor.
"""
assert not (input_ids is None and inputs_embeds is None)
if input_ids is not None:
inputs_embeds = tf.gather(params=self.weight, indices=input_ids)
input_shape = shape_list(inputs_embeds)[:-1]
if token_type_ids is None:
token_type_ids = tf.fill(dims=input_shape, value=0)
if self.trigram_input:
# From the paper MobileBERT: a Compact Task-Agnostic BERT for Resource-Limited
# Devices (https://arxiv.org/abs/2004.02984)
#
# The embedding table in BERT models accounts for a substantial proportion of model size. To compress
# the embedding layer, we reduce the embedding dimension to 128 in MobileBERT.
# Then, we apply a 1D convolution with kernel size 3 on the raw token embedding to produce a 512
# dimensional output.
inputs_embeds = tf.concat(
[
tf.pad(inputs_embeds[:, 1:], ((0, 0), (0, 1), (0, 0))),
inputs_embeds,
tf.pad(inputs_embeds[:, :-1], ((0, 0), (1, 0), (0, 0))),
],
axis=2,
)
if self.trigram_input or self.embedding_size != self.hidden_size:
inputs_embeds = self.embedding_transformation(inputs_embeds)
if position_ids is None:
position_ids = tf.expand_dims(tf.range(start=0, limit=input_shape[-1]), axis=0)
position_embeds = tf.gather(params=self.position_embeddings, indices=position_ids)
position_embeds = tf.tile(input=position_embeds, multiples=(input_shape[0], 1, 1))
token_type_embeds = tf.gather(params=self.token_type_embeddings, indices=token_type_ids)
final_embeddings = self.embeddings_sum(inputs=[inputs_embeds, position_embeds, token_type_embeds])
final_embeddings = self.LayerNorm(inputs=final_embeddings)
final_embeddings = self.dropout(inputs=final_embeddings, training=training)
return final_embeddings
class TFMobileBertSelfAttention(tf.keras.layers.Layer):
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
if config.hidden_size % config.num_attention_heads != 0:
raise ValueError(
"The hidden size (%d) is not a multiple of the number of attention "
"heads (%d)" % (config.hidden_size, config.num_attention_heads)
)
self.num_attention_heads = config.num_attention_heads
self.output_attentions = config.output_attentions
assert config.hidden_size % config.num_attention_heads == 0
self.attention_head_size = int(config.true_hidden_size / config.num_attention_heads)
self.all_head_size = self.num_attention_heads * self.attention_head_size
self.query = tf.keras.layers.Dense(
self.all_head_size, kernel_initializer=get_initializer(config.initializer_range), name="query"
)
self.key = tf.keras.layers.Dense(
self.all_head_size, kernel_initializer=get_initializer(config.initializer_range), name="key"
)
self.value = tf.keras.layers.Dense(
self.all_head_size, kernel_initializer=get_initializer(config.initializer_range), name="value"
)
self.dropout = tf.keras.layers.Dropout(config.attention_probs_dropout_prob)
def transpose_for_scores(self, x, batch_size):
# Reshape from [batch_size, seq_length, all_head_size] to [batch_size, seq_length, num_attention_heads, attention_head_size]
x = tf.reshape(x, (batch_size, -1, self.num_attention_heads, self.attention_head_size))
return tf.transpose(x, perm=[0, 2, 1, 3])
def call(
self, query_tensor, key_tensor, value_tensor, attention_mask, head_mask, output_attentions, training=False
):
batch_size = shape_list(attention_mask)[0]
mixed_query_layer = self.query(query_tensor)
mixed_key_layer = self.key(key_tensor)
mixed_value_layer = self.value(value_tensor)
query_layer = self.transpose_for_scores(mixed_query_layer, batch_size)
key_layer = self.transpose_for_scores(mixed_key_layer, batch_size)
value_layer = self.transpose_for_scores(mixed_value_layer, batch_size)
# Take the dot product between "query" and "key" to get the raw attention scores.
attention_scores = tf.matmul(
query_layer, key_layer, transpose_b=True
) # (batch size, num_heads, seq_len_q, seq_len_k)
dk = tf.cast(shape_list(key_layer)[-1], dtype=attention_scores.dtype) # scale attention_scores
attention_scores = attention_scores / tf.math.sqrt(dk)
if attention_mask is not None:
# Apply the attention mask is (precomputed for all layers in TFMobileBertModel call() function)
attention_mask = tf.cast(attention_mask, dtype=attention_scores.dtype)
attention_scores = attention_scores + attention_mask
# Normalize the attention scores to probabilities.
attention_probs = tf.nn.softmax(attention_scores, axis=-1)
# This is actually dropping out entire tokens to attend to, which might
# seem a bit unusual, but is taken from the original Transformer paper.
attention_probs = self.dropout(attention_probs, training=training)
# Mask heads if we want to
if head_mask is not None:
attention_probs = attention_probs * head_mask
context_layer = tf.matmul(attention_probs, value_layer)
context_layer = tf.transpose(context_layer, perm=[0, 2, 1, 3])
context_layer = tf.reshape(
context_layer, (batch_size, -1, self.all_head_size)
) # (batch_size, seq_len_q, all_head_size)
outputs = (context_layer, attention_probs) if output_attentions else (context_layer,)
return outputs
class TFMobileBertSelfOutput(tf.keras.layers.Layer):
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.use_bottleneck = config.use_bottleneck
self.dense = tf.keras.layers.Dense(
config.true_hidden_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
self.LayerNorm = NORM2FN[config.normalization_type](
config.true_hidden_size, epsilon=config.layer_norm_eps, name="LayerNorm"
)
if not self.use_bottleneck:
self.dropout = tf.keras.layers.Dropout(config.hidden_dropout_prob)
def call(self, hidden_states, residual_tensor, training=False):
hidden_states = self.dense(hidden_states)
if not self.use_bottleneck:
hidden_states = self.dropout(hidden_states, training=training)
hidden_states = self.LayerNorm(hidden_states + residual_tensor)
return hidden_states
class TFMobileBertAttention(tf.keras.layers.Layer):
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.self = TFMobileBertSelfAttention(config, name="self")
self.mobilebert_output = TFMobileBertSelfOutput(config, name="output")
def prune_heads(self, heads):
raise NotImplementedError
def call(
self,
query_tensor,
key_tensor,
value_tensor,
layer_input,
attention_mask,
head_mask,
output_attentions,
training=False,
):
self_outputs = self.self(
query_tensor, key_tensor, value_tensor, attention_mask, head_mask, output_attentions, training=training
)
attention_output = self.mobilebert_output(self_outputs[0], layer_input, training=training)
outputs = (attention_output,) + self_outputs[1:] # add attentions if we output them
return outputs
class TFOutputBottleneck(tf.keras.layers.Layer):
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(config.hidden_size, name="dense")
self.LayerNorm = NORM2FN[config.normalization_type](
config.hidden_size, epsilon=config.layer_norm_eps, name="LayerNorm"
)
self.dropout = tf.keras.layers.Dropout(config.hidden_dropout_prob)
def call(self, hidden_states, residual_tensor, training=False):
layer_outputs = self.dense(hidden_states)
layer_outputs = self.dropout(layer_outputs, training=training)
layer_outputs = self.LayerNorm(layer_outputs + residual_tensor)
return layer_outputs
class TFMobileBertOutput(tf.keras.layers.Layer):
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.use_bottleneck = config.use_bottleneck
self.dense = tf.keras.layers.Dense(
config.true_hidden_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
self.LayerNorm = NORM2FN[config.normalization_type](
config.true_hidden_size, epsilon=config.layer_norm_eps, name="LayerNorm"
)
if not self.use_bottleneck:
self.dropout = tf.keras.layers.Dropout(config.hidden_dropout_prob)
else:
self.bottleneck = TFOutputBottleneck(config, name="bottleneck")
def call(self, hidden_states, residual_tensor_1, residual_tensor_2, training=False):
hidden_states = self.dense(hidden_states)
if not self.use_bottleneck:
hidden_states = self.dropout(hidden_states, training=training)
hidden_states = self.LayerNorm(hidden_states + residual_tensor_1)
else:
hidden_states = self.LayerNorm(hidden_states + residual_tensor_1)
hidden_states = self.bottleneck(hidden_states, residual_tensor_2)
return hidden_states
class TFBottleneckLayer(tf.keras.layers.Layer):
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(config.intra_bottleneck_size, name="dense")
self.LayerNorm = NORM2FN[config.normalization_type](
config.intra_bottleneck_size, epsilon=config.layer_norm_eps, name="LayerNorm"
)
def call(self, inputs):
hidden_states = self.dense(inputs)
hidden_states = self.LayerNorm(hidden_states)
return hidden_states
class TFBottleneck(tf.keras.layers.Layer):
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.key_query_shared_bottleneck = config.key_query_shared_bottleneck
self.use_bottleneck_attention = config.use_bottleneck_attention
self.bottleneck_input = TFBottleneckLayer(config, name="input")
if self.key_query_shared_bottleneck:
self.attention = TFBottleneckLayer(config, name="attention")
def call(self, hidden_states):
# This method can return three different tuples of values. These different values make use of bottlenecks,
# which are linear layers used to project the hidden states to a lower-dimensional vector, reducing memory
# usage. These linear layer have weights that are learned during training.
#
# If `config.use_bottleneck_attention`, it will return the result of the bottleneck layer four times for the
# key, query, value, and "layer input" to be used by the attention layer.
# This bottleneck is used to project the hidden. This last layer input will be used as a residual tensor
# in the attention self output, after the attention scores have been computed.
#
# If not `config.use_bottleneck_attention` and `config.key_query_shared_bottleneck`, this will return
# four values, three of which have been passed through a bottleneck: the query and key, passed through the same
# bottleneck, and the residual layer to be applied in the attention self output, through another bottleneck.
#
# Finally, in the last case, the values for the query, key and values are the hidden states without bottleneck,
# and the residual layer will be this value passed through a bottleneck.
bottlenecked_hidden_states = self.bottleneck_input(hidden_states)
if self.use_bottleneck_attention:
return (bottlenecked_hidden_states,) * 4
elif self.key_query_shared_bottleneck:
shared_attention_input = self.attention(hidden_states)
return (shared_attention_input, shared_attention_input, hidden_states, bottlenecked_hidden_states)
else:
return (hidden_states, hidden_states, hidden_states, bottlenecked_hidden_states)
class TFFFNOutput(tf.keras.layers.Layer):
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(config.true_hidden_size, name="dense")
self.LayerNorm = NORM2FN[config.normalization_type](
config.true_hidden_size, epsilon=config.layer_norm_eps, name="LayerNorm"
)
def call(self, hidden_states, residual_tensor):
hidden_states = self.dense(hidden_states)
hidden_states = self.LayerNorm(hidden_states + residual_tensor)
return hidden_states
class TFFFNLayer(tf.keras.layers.Layer):
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.intermediate = TFMobileBertIntermediate(config, name="intermediate")
self.mobilebert_output = TFFFNOutput(config, name="output")
def call(self, hidden_states):
intermediate_output = self.intermediate(hidden_states)
layer_outputs = self.mobilebert_output(intermediate_output, hidden_states)
return layer_outputs
class TFMobileBertLayer(tf.keras.layers.Layer):
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.use_bottleneck = config.use_bottleneck
self.num_feedforward_networks = config.num_feedforward_networks
self.attention = TFMobileBertAttention(config, name="attention")
self.intermediate = TFMobileBertIntermediate(config, name="intermediate")
self.mobilebert_output = TFMobileBertOutput(config, name="output")
if self.use_bottleneck:
self.bottleneck = TFBottleneck(config, name="bottleneck")
if config.num_feedforward_networks > 1:
self.ffn = [
TFFFNLayer(config, name="ffn.{}".format(i)) for i in range(config.num_feedforward_networks - 1)
]
def call(self, hidden_states, attention_mask, head_mask, output_attentions, training=False):
if self.use_bottleneck:
query_tensor, key_tensor, value_tensor, layer_input = self.bottleneck(hidden_states)
else:
query_tensor, key_tensor, value_tensor, layer_input = [hidden_states] * 4
attention_outputs = self.attention(
query_tensor,
key_tensor,
value_tensor,
layer_input,
attention_mask,
head_mask,
output_attentions,
training=training,
)
attention_output = attention_outputs[0]
s = (attention_output,)
if self.num_feedforward_networks != 1:
for i, ffn_module in enumerate(self.ffn):
attention_output = ffn_module(attention_output)
s += (attention_output,)
intermediate_output = self.intermediate(attention_output)
layer_output = self.mobilebert_output(intermediate_output, attention_output, hidden_states, training=training)
outputs = (
(layer_output,)
+ attention_outputs[1:]
+ (
tf.constant(0),
query_tensor,
key_tensor,
value_tensor,
layer_input,
attention_output,
intermediate_output,
)
+ s
) # add attentions if we output them
return outputs
class TFMobileBertEncoder(tf.keras.layers.Layer):
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.output_attentions = config.output_attentions
self.output_hidden_states = config.output_hidden_states
self.layer = [TFMobileBertLayer(config, name="layer_._{}".format(i)) for i in range(config.num_hidden_layers)]
def call(
self,
hidden_states,
attention_mask,
head_mask,
output_attentions,
output_hidden_states,
return_dict,
training=False,
):
all_hidden_states = () if output_hidden_states else None
all_attentions = () if output_attentions else None
for i, layer_module in enumerate(self.layer):
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
layer_outputs = layer_module(
hidden_states, attention_mask, head_mask[i], output_attentions, training=training
)
hidden_states = layer_outputs[0]
if output_attentions:
all_attentions = all_attentions + (layer_outputs[1],)
# Add last layer
if output_hidden_states:
all_hidden_states = all_hidden_states + (hidden_states,)
if not return_dict:
return tuple(v for v in [hidden_states, all_hidden_states, all_attentions] if v is not None)
return TFBaseModelOutput(
last_hidden_state=hidden_states, hidden_states=all_hidden_states, attentions=all_attentions
)
class TFMobileBertPooler(tf.keras.layers.Layer):
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.do_activate = config.classifier_activation
if self.do_activate:
self.dense = tf.keras.layers.Dense(
config.hidden_size,
kernel_initializer=get_initializer(config.initializer_range),
activation="tanh",
name="dense",
)
def call(self, hidden_states):
# We "pool" the model by simply taking the hidden state corresponding
# to the first token.
first_token_tensor = hidden_states[:, 0]
if not self.do_activate:
return first_token_tensor
else:
pooled_output = self.dense(first_token_tensor)
return pooled_output
class TFMobileBertPredictionHeadTransform(tf.keras.layers.Layer):
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.dense = tf.keras.layers.Dense(
config.hidden_size, kernel_initializer=get_initializer(config.initializer_range), name="dense"
)
if isinstance(config.hidden_act, str):
self.transform_act_fn = get_tf_activation(config.hidden_act)
else:
self.transform_act_fn = config.hidden_act
self.LayerNorm = NORM2FN["layer_norm"](config.hidden_size, epsilon=config.layer_norm_eps, name="LayerNorm")
def call(self, hidden_states):
hidden_states = self.dense(hidden_states)
hidden_states = self.transform_act_fn(hidden_states)
hidden_states = self.LayerNorm(hidden_states)
return hidden_states
class TFMobileBertLMPredictionHead(tf.keras.layers.Layer):
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.transform = TFMobileBertPredictionHeadTransform(config, name="transform")
self.vocab_size = config.vocab_size
self.config = config
def build(self, input_shape):
self.bias = self.add_weight(shape=(self.vocab_size,), initializer="zeros", trainable=True, name="bias")
self.dense = self.add_weight(
shape=(self.config.hidden_size - self.config.embedding_size, self.vocab_size),
initializer="zeros",
trainable=True,
name="dense/weight",
)
self.decoder = self.add_weight(
shape=(self.config.vocab_size, self.config.embedding_size),
initializer="zeros",
trainable=True,
name="decoder/weight",
)
super().build(input_shape)
def get_output_embeddings(self):
return self
def set_output_embeddings(self, value):
self.decoder = value
self.vocab_size = shape_list(value)[0]
def get_bias(self):
return {"bias": self.bias}
def set_bias(self, value):
self.bias = value["bias"]
self.vocab_size = shape_list(value["bias"])[0]
def call(self, hidden_states):
hidden_states = self.transform(hidden_states)
hidden_states = tf.matmul(hidden_states, tf.concat([tf.transpose(self.decoder), self.dense], axis=0))
hidden_states = hidden_states + self.bias
return hidden_states
class TFMobileBertMLMHead(tf.keras.layers.Layer):
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.predictions = TFMobileBertLMPredictionHead(config, name="predictions")
def call(self, sequence_output):
prediction_scores = self.predictions(sequence_output)
return prediction_scores
@keras_serializable
class TFMobileBertMainLayer(tf.keras.layers.Layer):
config_class = MobileBertConfig
def __init__(self, config, add_pooling_layer=True, **kwargs):
super().__init__(**kwargs)
self.config = config
self.num_hidden_layers = config.num_hidden_layers
self.output_attentions = config.output_attentions
self.output_hidden_states = config.output_hidden_states
self.return_dict = config.use_return_dict
self.embeddings = TFMobileBertEmbeddings(config, name="embeddings")
self.encoder = TFMobileBertEncoder(config, name="encoder")
self.pooler = TFMobileBertPooler(config, name="pooler") if add_pooling_layer else None
def get_input_embeddings(self):
return self.embeddings
def set_input_embeddings(self, value):
self.embeddings.weight = value
self.embeddings.vocab_size = shape_list(value)[0]
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
raise NotImplementedError
def call(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
training=False,
**kwargs,
):
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
kwargs_call=kwargs,
)
if inputs["input_ids"] is not None and inputs["inputs_embeds"] is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif inputs["input_ids"] is not None:
input_shape = shape_list(inputs["input_ids"])
elif inputs["inputs_embeds"] is not None:
input_shape = shape_list(inputs["inputs_embeds"])[:-1]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
if inputs["attention_mask"] is None:
inputs["attention_mask"] = tf.fill(input_shape, 1)
if inputs["token_type_ids"] is None:
inputs["token_type_ids"] = tf.fill(input_shape, 0)
embedding_output = self.embeddings(
inputs["input_ids"],
inputs["position_ids"],
inputs["token_type_ids"],
inputs["inputs_embeds"],
training=inputs["training"],
)
# We create a 3D attention mask from a 2D tensor mask.
# Sizes are [batch_size, 1, 1, to_seq_length]
# So we can broadcast to [batch_size, num_heads, from_seq_length, to_seq_length]
# this attention mask is more simple than the triangular masking of causal attention
# used in OpenAI GPT, we just need to prepare the broadcast dimension here.
extended_attention_mask = tf.reshape(inputs["attention_mask"], (input_shape[0], 1, 1, input_shape[1]))
# Since attention_mask is 1.0 for positions we want to attend and 0.0 for
# masked positions, this operation will create a tensor which is 0.0 for
# positions we want to attend and -10000.0 for masked positions.
# Since we are adding it to the raw scores before the softmax, this is
# effectively the same as removing these entirely.
extended_attention_mask = tf.cast(extended_attention_mask, dtype=embedding_output.dtype)
one_cst = tf.constant(1.0, dtype=embedding_output.dtype)
ten_thousand_cst = tf.constant(-10000.0, dtype=embedding_output.dtype)
extended_attention_mask = tf.multiply(tf.subtract(one_cst, extended_attention_mask), ten_thousand_cst)
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x seq_length x seq_length]
if inputs["head_mask"] is not None:
raise NotImplementedError
else:
inputs["head_mask"] = [None] * self.num_hidden_layers
encoder_outputs = self.encoder(
embedding_output,
extended_attention_mask,
inputs["head_mask"],
inputs["output_attentions"],
inputs["output_hidden_states"],
inputs["return_dict"],
training=inputs["training"],
)
sequence_output = encoder_outputs[0]
pooled_output = self.pooler(sequence_output) if self.pooler is not None else None
if not inputs["return_dict"]:
return (
sequence_output,
pooled_output,
) + encoder_outputs[1:]
return TFBaseModelOutputWithPooling(
last_hidden_state=sequence_output,
pooler_output=pooled_output,
hidden_states=encoder_outputs.hidden_states,
attentions=encoder_outputs.attentions,
)
class TFMobileBertPreTrainedModel(TFPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = MobileBertConfig
base_model_prefix = "mobilebert"
@dataclass
class TFMobileBertForPreTrainingOutput(ModelOutput):
"""
Output type of :class:`~transformers.TFMobileBertForPreTraining`.
Args:
prediction_logits (:obj:`tf.Tensor` of shape :obj:`(batch_size, sequence_length, config.vocab_size)`):
Prediction scores of the language modeling head (scores for each vocabulary token before SoftMax).
seq_relationship_logits (:obj:`tf.Tensor` of shape :obj:`(batch_size, 2)`):
Prediction scores of the next sequence prediction (classification) head (scores of True/False continuation
before SoftMax).
hidden_states (:obj:`tuple(tf.Tensor)`, `optional`, returned when ``output_hidden_states=True`` is passed or when ``config.output_hidden_states=True``):
Tuple of :obj:`tf.Tensor` (one for the output of the embeddings + one for the output of each layer) of
shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(tf.Tensor)`, `optional`, returned when ``output_attentions=True`` is passed or when ``config.output_attentions=True``):
Tuple of :obj:`tf.Tensor` (one for each layer) of shape :obj:`(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
loss: Optional[tf.Tensor] = None
prediction_logits: tf.Tensor = None
seq_relationship_logits: tf.Tensor = None
hidden_states: Optional[Tuple[tf.Tensor]] = None
attentions: Optional[Tuple[tf.Tensor]] = None
MOBILEBERT_START_DOCSTRING = r"""
This model inherits from :class:`~transformers.TFPreTrainedModel`. Check the superclass documentation for the
generic methods the library implements for all its model (such as downloading or saving, resizing the input
embeddings, pruning heads etc.)
This model is also a `tf.keras.Model <https://www.tensorflow.org/api_docs/python/tf/keras/Model>`__ subclass. Use
it as a regular TF 2.0 Keras Model and refer to the TF 2.0 documentation for all matter related to general usage
and behavior.
.. note::
TF 2.0 models accepts two formats as inputs:
- having all inputs as keyword arguments (like PyTorch models), or
- having all inputs as a list, tuple or dict in the first positional arguments.
This second option is useful when using :meth:`tf.keras.Model.fit` method which currently requires having all
the tensors in the first argument of the model call function: :obj:`model(inputs)`.
If you choose this second option, there are three possibilities you can use to gather all the input Tensors in
the first positional argument :
- a single Tensor with :obj:`input_ids` only and nothing else: :obj:`model(inputs_ids)`
- a list of varying length with one or several input Tensors IN THE ORDER given in the docstring:
:obj:`model([input_ids, attention_mask])` or :obj:`model([input_ids, attention_mask, token_type_ids])`
- a dictionary with one or several input Tensors associated to the input names given in the docstring:
:obj:`model({"input_ids": input_ids, "token_type_ids": token_type_ids})`
Parameters:
config (:class:`~transformers.MobileBertConfig`): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the :meth:`~transformers.PreTrainedModel.from_pretrained` method to load the model
weights.
"""
MOBILEBERT_INPUTS_DOCSTRING = r"""
Args:
input_ids (:obj:`Numpy array` or :obj:`tf.Tensor` of shape :obj:`({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using :class:`~transformers.MobileBertTokenizer`. See
:func:`transformers.PreTrainedTokenizer.__call__` and :func:`transformers.PreTrainedTokenizer.encode` for
details.
`What are input IDs? <../glossary.html#input-ids>`__
attention_mask (:obj:`Numpy array` or :obj:`tf.Tensor` of shape :obj:`({0})`, `optional`):
Mask to avoid performing attention on padding token indices. Mask values selected in ``[0, 1]``:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
`What are attention masks? <../glossary.html#attention-mask>`__
token_type_ids (:obj:`Numpy array` or :obj:`tf.Tensor` of shape :obj:`({0})`, `optional`):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in ``[0,
1]``:
- 0 corresponds to a `sentence A` token,
- 1 corresponds to a `sentence B` token.
`What are token type IDs? <../glossary.html#token-type-ids>`__
position_ids (:obj:`Numpy array` or :obj:`tf.Tensor` of shape :obj:`({0})`, `optional`):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range ``[0,
config.max_position_embeddings - 1]``.
`What are position IDs? <../glossary.html#position-ids>`__
head_mask (:obj:`Numpy array` or :obj:`tf.Tensor` of shape :obj:`(num_heads,)` or :obj:`(num_layers, num_heads)`, `optional`):
Mask to nullify selected heads of the self-attention modules. Mask values selected in ``[0, 1]``:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (:obj:`tf.Tensor` of shape :obj:`({0}, hidden_size)`, `optional`):
Optionally, instead of passing :obj:`input_ids` you can choose to directly pass an embedded representation.
This is useful if you want more control over how to convert :obj:`input_ids` indices into associated
vectors than the model's internal embedding lookup matrix.
output_attentions (:obj:`bool`, `optional`):
Whether or not to return the attentions tensors of all attention layers. See ``attentions`` under returned
tensors for more detail. This argument can be used only in eager mode, in graph mode the value in the
config will be used instead.
output_hidden_states (:obj:`bool`, `optional`):
Whether or not to return the hidden states of all layers. See ``hidden_states`` under returned tensors for
more detail. This argument can be used only in eager mode, in graph mode the value in the config will be
used instead.
return_dict (:obj:`bool`, `optional`):
Whether or not to return a :class:`~transformers.file_utils.ModelOutput` instead of a plain tuple. This
argument can be used in eager mode, in graph mode the value will always be set to True.
training (:obj:`bool`, `optional`, defaults to :obj:`False`):
Whether or not to use the model in training mode (some modules like dropout modules have different
behaviors between training and evaluation).
"""
@add_start_docstrings(
"The bare MobileBert Model transformer outputting raw hidden-states without any specific head on top.",
MOBILEBERT_START_DOCSTRING,
)
class TFMobileBertModel(TFMobileBertPreTrainedModel):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.mobilebert = TFMobileBertMainLayer(config, name="mobilebert")
@add_start_docstrings_to_model_forward(MOBILEBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFBaseModelOutputWithPooling,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
training=False,
**kwargs,
):
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
kwargs_call=kwargs,
)
outputs = self.mobilebert(
input_ids=inputs["input_ids"],
attention_mask=inputs["attention_mask"],
token_type_ids=inputs["token_type_ids"],
position_ids=inputs["position_ids"],
head_mask=inputs["head_mask"],
inputs_embeds=inputs["inputs_embeds"],
output_attentions=inputs["output_attentions"],
output_hidden_states=inputs["output_hidden_states"],
return_dict=inputs["return_dict"],
training=inputs["training"],
)
return outputs
# Copied from transformers.models.bert.modeling_tf_bert.TFBertModel.serving_output
def serving_output(self, output: TFBaseModelOutputWithPooling) -> TFBaseModelOutputWithPooling:
hs = tf.convert_to_tensor(output.hidden_states) if self.config.output_hidden_states else None
attns = tf.convert_to_tensor(output.attentions) if self.config.output_attentions else None
return TFBaseModelOutputWithPooling(
last_hidden_state=output.last_hidden_state,
pooler_output=output.pooler_output,
hidden_states=hs,
attentions=attns,
)
@add_start_docstrings(
"""
MobileBert Model with two heads on top as done during the pretraining: a `masked language modeling` head and a
`next sentence prediction (classification)` head.
""",
MOBILEBERT_START_DOCSTRING,
)
class TFMobileBertForPreTraining(TFMobileBertPreTrainedModel):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.mobilebert = TFMobileBertMainLayer(config, name="mobilebert")
self.predictions = TFMobileBertMLMHead(config, name="predictions___cls")
self.seq_relationship = TFMobileBertOnlyNSPHead(2, name="seq_relationship___cls")
def get_lm_head(self):
return self.predictions.predictions
def get_prefix_bias_name(self):
warnings.warn("The method get_prefix_bias_name is deprecated. Please use `get_bias` instead.", FutureWarning)
return self.name + "/" + self.predictions.name + "/" + self.predictions.predictions.name
@add_start_docstrings_to_model_forward(MOBILEBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@replace_return_docstrings(output_type=TFMobileBertForPreTrainingOutput, config_class=_CONFIG_FOR_DOC)
def call(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
training=False,
**kwargs,
):
r"""
Return:
Examples::
>>> import tensorflow as tf
>>> from transformers import MobileBertTokenizer, TFMobileBertForPreTraining
>>> tokenizer = MobileBertTokenizer.from_pretrained('google/mobilebert-uncased')
>>> model = TFMobileBertForPreTraining.from_pretrained('google/mobilebert-uncased')
>>> input_ids = tf.constant(tokenizer.encode("Hello, my dog is cute"))[None, :] # Batch size 1
>>> outputs = model(input_ids)
>>> prediction_scores, seq_relationship_scores = outputs[:2]
"""
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
kwargs_call=kwargs,
)
outputs = self.mobilebert(
inputs["input_ids"],
attention_mask=inputs["attention_mask"],
token_type_ids=inputs["token_type_ids"],
position_ids=inputs["position_ids"],
head_mask=inputs["head_mask"],
inputs_embeds=inputs["inputs_embeds"],
output_attentions=inputs["output_attentions"],
output_hidden_states=inputs["output_hidden_states"],
return_dict=inputs["return_dict"],
training=inputs["training"],
)
sequence_output, pooled_output = outputs[:2]
prediction_scores = self.predictions(sequence_output)
seq_relationship_score = self.seq_relationship(pooled_output)
if not inputs["return_dict"]:
return (prediction_scores, seq_relationship_score) + outputs[2:]
return TFMobileBertForPreTrainingOutput(
prediction_logits=prediction_scores,
seq_relationship_logits=seq_relationship_score,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
def serving_output(self, output):
hs = tf.convert_to_tensor(output.hidden_states) if self.config.output_hidden_states else None
attns = tf.convert_to_tensor(output.attentions) if self.config.output_attentions else None
return TFMobileBertForPreTrainingOutput(
prediction_logits=output.prediction_logits,
seq_relationship_logits=output.seq_relationship_logits,
hidden_states=hs,
attentions=attns,
)
@add_start_docstrings("""MobileBert Model with a `language modeling` head on top. """, MOBILEBERT_START_DOCSTRING)
class TFMobileBertForMaskedLM(TFMobileBertPreTrainedModel, TFMaskedLanguageModelingLoss):
# names with a '.' represents the authorized unexpected/missing layers when a TF model is loaded from a PT model
_keys_to_ignore_on_load_unexpected = [
r"pooler",
r"seq_relationship___cls",
r"cls.seq_relationship",
]
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.mobilebert = TFMobileBertMainLayer(config, add_pooling_layer=False, name="mobilebert")
self.predictions = TFMobileBertMLMHead(config, name="predictions___cls")
def get_lm_head(self):
return self.predictions.predictions
def get_prefix_bias_name(self):
warnings.warn("The method get_prefix_bias_name is deprecated. Please use `get_bias` instead.", FutureWarning)
return self.name + "/" + self.mlm.name + "/" + self.mlm.predictions.name
@add_start_docstrings_to_model_forward(MOBILEBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFMaskedLMOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
labels=None,
training=False,
**kwargs,
):
r"""
labels (:obj:`tf.Tensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Labels for computing the masked language modeling loss. Indices should be in ``[-100, 0, ...,
config.vocab_size]`` (see ``input_ids`` docstring) Tokens with indices set to ``-100`` are ignored
(masked), the loss is only computed for the tokens with labels
"""
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
labels=labels,
training=training,
kwargs_call=kwargs,
)
outputs = self.mobilebert(
inputs["input_ids"],
attention_mask=inputs["attention_mask"],
token_type_ids=inputs["token_type_ids"],
position_ids=inputs["position_ids"],
head_mask=inputs["head_mask"],
inputs_embeds=inputs["inputs_embeds"],
output_attentions=inputs["output_attentions"],
output_hidden_states=inputs["output_hidden_states"],
return_dict=inputs["return_dict"],
training=inputs["training"],
)
sequence_output = outputs[0]
prediction_scores = self.predictions(sequence_output, training=inputs["training"])
loss = None if inputs["labels"] is None else self.compute_loss(inputs["labels"], prediction_scores)
if not inputs["return_dict"]:
output = (prediction_scores,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TFMaskedLMOutput(
loss=loss,
logits=prediction_scores,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
# Copied from transformers.models.bert.modeling_tf_bert.TFBertForMaskedLM.serving_output
def serving_output(self, output: TFMaskedLMOutput) -> TFMaskedLMOutput:
hs = tf.convert_to_tensor(output.hidden_states) if self.config.output_hidden_states else None
attns = tf.convert_to_tensor(output.attentions) if self.config.output_attentions else None
return TFMaskedLMOutput(logits=output.logits, hidden_states=hs, attentions=attns)
class TFMobileBertOnlyNSPHead(tf.keras.layers.Layer):
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.seq_relationship = tf.keras.layers.Dense(2, name="seq_relationship")
def call(self, pooled_output):
seq_relationship_score = self.seq_relationship(pooled_output)
return seq_relationship_score
@add_start_docstrings(
"""MobileBert Model with a `next sentence prediction (classification)` head on top. """,
MOBILEBERT_START_DOCSTRING,
)
class TFMobileBertForNextSentencePrediction(TFMobileBertPreTrainedModel, TFNextSentencePredictionLoss):
# names with a '.' represents the authorized unexpected/missing layers when a TF model is loaded from a PT model
_keys_to_ignore_on_load_unexpected = [r"predictions___cls", r"cls.predictions"]
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.mobilebert = TFMobileBertMainLayer(config, name="mobilebert")
self.cls = TFMobileBertOnlyNSPHead(config, name="seq_relationship___cls")
@add_start_docstrings_to_model_forward(MOBILEBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@replace_return_docstrings(output_type=TFNextSentencePredictorOutput, config_class=_CONFIG_FOR_DOC)
def call(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
next_sentence_label=None,
training=False,
**kwargs,
):
r"""
Return:
Examples::
>>> import tensorflow as tf
>>> from transformers import MobileBertTokenizer, TFMobileBertForNextSentencePrediction
>>> tokenizer = MobileBertTokenizer.from_pretrained('google/mobilebert-uncased')
>>> model = TFMobileBertForNextSentencePrediction.from_pretrained('google/mobilebert-uncased')
>>> prompt = "In Italy, pizza served in formal settings, such as at a restaurant, is presented unsliced."
>>> next_sentence = "The sky is blue due to the shorter wavelength of blue light."
>>> encoding = tokenizer(prompt, next_sentence, return_tensors='tf')
>>> logits = model(encoding['input_ids'], token_type_ids=encoding['token_type_ids'])[0]
"""
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
next_sentence_label=next_sentence_label,
training=training,
kwargs_call=kwargs,
)
outputs = self.mobilebert(
inputs["input_ids"],
attention_mask=inputs["attention_mask"],
token_type_ids=inputs["token_type_ids"],
position_ids=inputs["position_ids"],
head_mask=inputs["head_mask"],
inputs_embeds=inputs["inputs_embeds"],
output_attentions=inputs["output_attentions"],
output_hidden_states=inputs["output_hidden_states"],
return_dict=inputs["return_dict"],
training=inputs["training"],
)
pooled_output = outputs[1]
seq_relationship_scores = self.cls(pooled_output)
next_sentence_loss = (
None
if inputs["next_sentence_label"] is None
else self.compute_loss(labels=inputs["next_sentence_label"], logits=seq_relationship_scores)
)
if not inputs["return_dict"]:
output = (seq_relationship_scores,) + outputs[2:]
return ((next_sentence_loss,) + output) if next_sentence_loss is not None else output
return TFNextSentencePredictorOutput(
loss=next_sentence_loss,
logits=seq_relationship_scores,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
# Copied from transformers.models.bert.modeling_tf_bert.TFBertForNextSentencePrediction.serving_output
def serving_output(self, output: TFNextSentencePredictorOutput) -> TFNextSentencePredictorOutput:
hs = tf.convert_to_tensor(output.hidden_states) if self.config.output_hidden_states else None
attns = tf.convert_to_tensor(output.attentions) if self.config.output_attentions else None
return TFNextSentencePredictorOutput(logits=output.logits, hidden_states=hs, attentions=attns)
@add_start_docstrings(
"""
MobileBert Model transformer with a sequence classification/regression head on top (a linear layer on top of the
pooled output) e.g. for GLUE tasks.
""",
MOBILEBERT_START_DOCSTRING,
)
class TFMobileBertForSequenceClassification(TFMobileBertPreTrainedModel, TFSequenceClassificationLoss):
# names with a '.' represents the authorized unexpected/missing layers when a TF model is loaded from a PT model
_keys_to_ignore_on_load_unexpected = [
r"predictions___cls",
r"seq_relationship___cls",
r"cls.predictions",
r"cls.seq_relationship",
]
_keys_to_ignore_on_load_missing = [r"dropout"]
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.num_labels = config.num_labels
self.mobilebert = TFMobileBertMainLayer(config, name="mobilebert")
self.dropout = tf.keras.layers.Dropout(config.hidden_dropout_prob)
self.classifier = tf.keras.layers.Dense(
config.num_labels, kernel_initializer=get_initializer(config.initializer_range), name="classifier"
)
@add_start_docstrings_to_model_forward(MOBILEBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFSequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
labels=None,
training=False,
**kwargs,
):
r"""
labels (:obj:`tf.Tensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for computing the sequence classification/regression loss. Indices should be in :obj:`[0, ...,
config.num_labels - 1]`. If :obj:`config.num_labels == 1` a regression loss is computed (Mean-Square loss),
If :obj:`config.num_labels > 1` a classification loss is computed (Cross-Entropy).
"""
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
labels=labels,
training=training,
kwargs_call=kwargs,
)
outputs = self.mobilebert(
inputs["input_ids"],
attention_mask=inputs["attention_mask"],
token_type_ids=inputs["token_type_ids"],
position_ids=inputs["position_ids"],
head_mask=inputs["head_mask"],
inputs_embeds=inputs["inputs_embeds"],
output_attentions=inputs["output_attentions"],
output_hidden_states=inputs["output_hidden_states"],
return_dict=inputs["return_dict"],
training=inputs["training"],
)
pooled_output = outputs[1]
pooled_output = self.dropout(pooled_output, training=inputs["training"])
logits = self.classifier(pooled_output)
loss = None if inputs["labels"] is None else self.compute_loss(inputs["labels"], logits)
if not inputs["return_dict"]:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TFSequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
# Copied from transformers.models.bert.modeling_tf_bert.TFBertForSequenceClassification.serving_output
def serving_output(self, output: TFSequenceClassifierOutput) -> TFSequenceClassifierOutput:
hs = tf.convert_to_tensor(output.hidden_states) if self.config.output_hidden_states else None
attns = tf.convert_to_tensor(output.attentions) if self.config.output_attentions else None
return TFSequenceClassifierOutput(logits=output.logits, hidden_states=hs, attentions=attns)
@add_start_docstrings(
"""
MobileBert Model with a span classification head on top for extractive question-answering tasks like SQuAD (a
linear layers on top of the hidden-states output to compute `span start logits` and `span end logits`).
""",
MOBILEBERT_START_DOCSTRING,
)
class TFMobileBertForQuestionAnswering(TFMobileBertPreTrainedModel, TFQuestionAnsweringLoss):
# names with a '.' represents the authorized unexpected/missing layers when a TF model is loaded from a PT model
_keys_to_ignore_on_load_unexpected = [
r"pooler",
r"predictions___cls",
r"seq_relationship___cls",
r"cls.predictions",
r"cls.seq_relationship",
]
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.num_labels = config.num_labels
self.mobilebert = TFMobileBertMainLayer(config, add_pooling_layer=False, name="mobilebert")
self.qa_outputs = tf.keras.layers.Dense(
config.num_labels, kernel_initializer=get_initializer(config.initializer_range), name="qa_outputs"
)
@add_start_docstrings_to_model_forward(MOBILEBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFQuestionAnsweringModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
start_positions=None,
end_positions=None,
training=False,
**kwargs,
):
r"""
start_positions (:obj:`tf.Tensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for position (index) of the start of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (:obj:`sequence_length`). Position outside of the
sequence are not taken into account for computing the loss.
end_positions (:obj:`tf.Tensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for position (index) of the end of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (:obj:`sequence_length`). Position outside of the
sequence are not taken into account for computing the loss.
"""
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
start_positions=start_positions,
end_positions=end_positions,
training=training,
kwargs_call=kwargs,
)
outputs = self.mobilebert(
inputs["input_ids"],
attention_mask=inputs["attention_mask"],
token_type_ids=inputs["token_type_ids"],
position_ids=inputs["position_ids"],
head_mask=inputs["head_mask"],
inputs_embeds=inputs["inputs_embeds"],
output_attentions=inputs["output_attentions"],
output_hidden_states=inputs["output_hidden_states"],
return_dict=inputs["return_dict"],
training=inputs["training"],
)
sequence_output = outputs[0]
logits = self.qa_outputs(sequence_output)
start_logits, end_logits = tf.split(logits, 2, axis=-1)
start_logits = tf.squeeze(start_logits, axis=-1)
end_logits = tf.squeeze(end_logits, axis=-1)
loss = None
if inputs["start_positions"] is not None and inputs["end_positions"] is not None:
labels = {"start_position": inputs["start_positions"]}
labels["end_position"] = inputs["end_positions"]
loss = self.compute_loss(labels, (start_logits, end_logits))
if not inputs["return_dict"]:
output = (start_logits, end_logits) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TFQuestionAnsweringModelOutput(
loss=loss,
start_logits=start_logits,
end_logits=end_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
# Copied from transformers.models.bert.modeling_tf_bert.TFBertForQuestionAnswering.serving_output
def serving_output(self, output: TFQuestionAnsweringModelOutput) -> TFQuestionAnsweringModelOutput:
hs = tf.convert_to_tensor(output.hidden_states) if self.config.output_hidden_states else None
attns = tf.convert_to_tensor(output.attentions) if self.config.output_attentions else None
return TFQuestionAnsweringModelOutput(
start_logits=output.start_logits, end_logits=output.end_logits, hidden_states=hs, attentions=attns
)
@add_start_docstrings(
"""
MobileBert Model with a multiple choice classification head on top (a linear layer on top of the pooled output and
a softmax) e.g. for RocStories/SWAG tasks.
""",
MOBILEBERT_START_DOCSTRING,
)
class TFMobileBertForMultipleChoice(TFMobileBertPreTrainedModel, TFMultipleChoiceLoss):
# names with a '.' represents the authorized unexpected/missing layers when a TF model is loaded from a PT model
_keys_to_ignore_on_load_unexpected = [
r"predictions___cls",
r"seq_relationship___cls",
r"cls.predictions",
r"cls.seq_relationship",
]
_keys_to_ignore_on_load_missing = [r"dropout"]
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.mobilebert = TFMobileBertMainLayer(config, name="mobilebert")
self.dropout = tf.keras.layers.Dropout(config.hidden_dropout_prob)
self.classifier = tf.keras.layers.Dense(
1, kernel_initializer=get_initializer(config.initializer_range), name="classifier"
)
@property
def dummy_inputs(self):
"""
Dummy inputs to build the network.
Returns:
tf.Tensor with dummy inputs
"""
return {"input_ids": tf.constant(MULTIPLE_CHOICE_DUMMY_INPUTS)}
@add_start_docstrings_to_model_forward(
MOBILEBERT_INPUTS_DOCSTRING.format("batch_size, num_choices, sequence_length")
)
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFMultipleChoiceModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
labels=None,
training=False,
**kwargs,
):
r"""
labels (:obj:`tf.Tensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for computing the multiple choice classification loss. Indices should be in ``[0, ...,
num_choices]`` where :obj:`num_choices` is the size of the second dimension of the input tensors. (See
:obj:`input_ids` above)
"""
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
labels=labels,
training=training,
kwargs_call=kwargs,
)
if inputs["input_ids"] is not None:
num_choices = shape_list(inputs["input_ids"])[1]
seq_length = shape_list(inputs["input_ids"])[2]
else:
num_choices = shape_list(inputs["inputs_embeds"])[1]
seq_length = shape_list(inputs["inputs_embeds"])[2]
flat_input_ids = tf.reshape(inputs["input_ids"], (-1, seq_length)) if inputs["input_ids"] is not None else None
flat_attention_mask = (
tf.reshape(inputs["attention_mask"], (-1, seq_length)) if inputs["attention_mask"] is not None else None
)
flat_token_type_ids = (
tf.reshape(inputs["token_type_ids"], (-1, seq_length)) if inputs["token_type_ids"] is not None else None
)
flat_position_ids = (
tf.reshape(inputs["position_ids"], (-1, seq_length)) if inputs["position_ids"] is not None else None
)
flat_inputs_embeds = (
tf.reshape(inputs["inputs_embeds"], (-1, seq_length, shape_list(inputs["inputs_embeds"])[3]))
if inputs["inputs_embeds"] is not None
else None
)
outputs = self.mobilebert(
flat_input_ids,
flat_attention_mask,
flat_token_type_ids,
flat_position_ids,
inputs["head_mask"],
flat_inputs_embeds,
inputs["output_attentions"],
inputs["output_hidden_states"],
return_dict=inputs["return_dict"],
training=inputs["training"],
)
pooled_output = outputs[1]
pooled_output = self.dropout(pooled_output, training=inputs["training"])
logits = self.classifier(pooled_output)
reshaped_logits = tf.reshape(logits, (-1, num_choices))
loss = None if inputs["labels"] is None else self.compute_loss(inputs["labels"], reshaped_logits)
if not inputs["return_dict"]:
output = (reshaped_logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TFMultipleChoiceModelOutput(
loss=loss,
logits=reshaped_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@tf.function(
input_signature=[
{
"input_ids": tf.TensorSpec((None, None, None), tf.int32, name="input_ids"),
"attention_mask": tf.TensorSpec((None, None, None), tf.int32, name="attention_mask"),
"token_type_ids": tf.TensorSpec((None, None, None), tf.int32, name="token_type_ids"),
}
]
)
# Copied from transformers.models.bert.modeling_tf_bert.TFBertForMultipleChoice.serving
def serving(self, inputs: Dict[str, tf.Tensor]):
output = self.call(input_ids=inputs)
return self.serving_output(output)
# Copied from transformers.models.bert.modeling_tf_bert.TFBertForMultipleChoice.serving_output
def serving_output(self, output: TFMultipleChoiceModelOutput) -> TFMultipleChoiceModelOutput:
hs = tf.convert_to_tensor(output.hidden_states) if self.config.output_hidden_states else None
attns = tf.convert_to_tensor(output.attentions) if self.config.output_attentions else None
return TFMultipleChoiceModelOutput(logits=output.logits, hidden_states=hs, attentions=attns)
@add_start_docstrings(
"""
MobileBert Model with a token classification head on top (a linear layer on top of the hidden-states output) e.g.
for Named-Entity-Recognition (NER) tasks.
""",
MOBILEBERT_START_DOCSTRING,
)
class TFMobileBertForTokenClassification(TFMobileBertPreTrainedModel, TFTokenClassificationLoss):
# names with a '.' represents the authorized unexpected/missing layers when a TF model is loaded from a PT model
_keys_to_ignore_on_load_unexpected = [
r"pooler",
r"predictions___cls",
r"seq_relationship___cls",
r"cls.predictions",
r"cls.seq_relationship",
]
_keys_to_ignore_on_load_missing = [r"dropout"]
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.num_labels = config.num_labels
self.mobilebert = TFMobileBertMainLayer(config, add_pooling_layer=False, name="mobilebert")
self.dropout = tf.keras.layers.Dropout(config.hidden_dropout_prob)
self.classifier = tf.keras.layers.Dense(
config.num_labels, kernel_initializer=get_initializer(config.initializer_range), name="classifier"
)
@add_start_docstrings_to_model_forward(MOBILEBERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFTokenClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids=None,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
labels=None,
training=False,
**kwargs,
):
r"""
labels (:obj:`tf.Tensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Labels for computing the token classification loss. Indices should be in ``[0, ..., config.num_labels -
1]``.
"""
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
token_type_ids=token_type_ids,
position_ids=position_ids,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
labels=labels,
training=training,
kwargs_call=kwargs,
)
outputs = self.mobilebert(
inputs["input_ids"],
attention_mask=inputs["attention_mask"],
token_type_ids=inputs["token_type_ids"],
position_ids=inputs["position_ids"],
head_mask=inputs["head_mask"],
inputs_embeds=inputs["inputs_embeds"],
output_attentions=inputs["output_attentions"],
output_hidden_states=inputs["output_hidden_states"],
return_dict=return_dict,
training=inputs["training"],
)
sequence_output = outputs[0]
sequence_output = self.dropout(sequence_output, training=inputs["training"])
logits = self.classifier(sequence_output)
loss = None if inputs["labels"] is None else self.compute_loss(inputs["labels"], logits)
if not inputs["return_dict"]:
output = (logits,) + outputs[2:]
return ((loss,) + output) if loss is not None else output
return TFTokenClassifierOutput(
loss=loss,
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
# Copied from transformers.models.bert.modeling_tf_bert.TFBertForTokenClassification.serving_output
def serving_output(self, output: TFTokenClassifierOutput) -> TFTokenClassifierOutput:
hs = tf.convert_to_tensor(output.hidden_states) if self.config.output_hidden_states else None
attns = tf.convert_to_tensor(output.attentions) if self.config.output_attentions else None
return TFTokenClassifierOutput(logits=output.logits, hidden_states=hs, attentions=attns)
|
AdaMix/src/transformers/models/mobilebert/modeling_tf_mobilebert.py/0
|
{
"file_path": "AdaMix/src/transformers/models/mobilebert/modeling_tf_mobilebert.py",
"repo_id": "AdaMix",
"token_count": 32803
}
| 58 |
# coding=utf-8
# Copyright 2018 The Open AI Team Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""Fast Tokenization classes for OpenAI GPT."""
from typing import Optional, Tuple
from ...tokenization_utils_fast import PreTrainedTokenizerFast
from ...utils import logging
from .tokenization_openai import OpenAIGPTTokenizer
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {"vocab_file": "vocab.json", "merges_file": "merges.txt", "tokenizer_file": "tokenizer.json"}
PRETRAINED_VOCAB_FILES_MAP = {
"vocab_file": {"openai-gpt": "https://huggingface.co/openai-gpt/resolve/main/vocab.json"},
"merges_file": {"openai-gpt": "https://huggingface.co/openai-gpt/resolve/main/merges.txt"},
"tokenizer_file": {"openai-gpt": "https://huggingface.co/openai-gpt/resolve/main/tokenizer.json"},
}
PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES = {
"openai-gpt": 512,
}
class OpenAIGPTTokenizerFast(PreTrainedTokenizerFast):
"""
Construct a "fast" GPT Tokenizer (backed by HuggingFace's `tokenizers` library). Based on Byte-Pair-Encoding with
the following peculiarities:
- lower case all inputs
- uses BERT's BasicTokenizer for pre-BPE tokenization
This tokenizer inherits from :class:`~transformers.PreTrainedTokenizerFast` which contains most of the main
methods. Users should refer to this superclass for more information regarding those methods.
Args:
vocab_file (:obj:`str`):
Path to the vocabulary file.
merges_file (:obj:`str`):
Path to the merges file.
unk_token (:obj:`str`, `optional`, defaults to :obj:`"<unk>"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
"""
vocab_files_names = VOCAB_FILES_NAMES
pretrained_vocab_files_map = PRETRAINED_VOCAB_FILES_MAP
max_model_input_sizes = PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES
model_input_names = ["input_ids", "attention_mask"]
slow_tokenizer_class = OpenAIGPTTokenizer
def __init__(self, vocab_file, merges_file, tokenizer_file=None, unk_token="<unk>", **kwargs):
super().__init__(vocab_file, merges_file, tokenizer_file=tokenizer_file, unk_token=unk_token, **kwargs)
@property
def do_lower_case(self):
return True
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
files = self._tokenizer.model.save(save_directory, name=filename_prefix)
return tuple(files)
|
AdaMix/src/transformers/models/openai/tokenization_openai_fast.py/0
|
{
"file_path": "AdaMix/src/transformers/models/openai/tokenization_openai_fast.py",
"repo_id": "AdaMix",
"token_count": 1111
}
| 59 |
# coding=utf-8
# Copyright (c) 2020, VinAI Research and the HuggingFace Inc. team.
# Copyright 2018 The Open AI Team Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Tokenization classes for PhoBERT """
import os
import re
from shutil import copyfile
from typing import List, Optional, Tuple
from ...tokenization_utils import PreTrainedTokenizer
from ...utils import logging
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {
"vocab_file": "vocab.txt",
"merges_file": "bpe.codes",
}
PRETRAINED_VOCAB_FILES_MAP = {
"vocab_file": {
"vinai/phobert-base": "https://huggingface.co/vinai/phobert-base/resolve/main/vocab.txt",
"vinai/phobert-large": "https://huggingface.co/vinai/phobert-large/resolve/main/vocab.txt",
},
"merges_file": {
"vinai/phobert-base": "https://huggingface.co/vinai/phobert-base/resolve/main/bpe.codes",
"vinai/phobert-large": "https://huggingface.co/vinai/phobert-large/resolve/main/bpe.codes",
},
}
PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES = {
"vinai/phobert-base": 256,
"vinai/phobert-large": 256,
}
def get_pairs(word):
"""
Return set of symbol pairs in a word.
Word is represented as tuple of symbols (symbols being variable-length strings).
"""
pairs = set()
prev_char = word[0]
for char in word[1:]:
pairs.add((prev_char, char))
prev_char = char
pairs = set(pairs)
return pairs
class PhobertTokenizer(PreTrainedTokenizer):
"""
Construct a PhoBERT tokenizer. Based on Byte-Pair-Encoding.
This tokenizer inherits from :class:`~transformers.PreTrainedTokenizer` which contains most of the main methods.
Users should refer to this superclass for more information regarding those methods.
Args:
vocab_file (:obj:`str`):
Path to the vocabulary file.
merges_file (:obj:`str`):
Path to the merges file.
bos_token (:obj:`st`, `optional`, defaults to :obj:`"<s>"`):
The beginning of sequence token that was used during pretraining. Can be used a sequence classifier token.
.. note::
When building a sequence using special tokens, this is not the token that is used for the beginning of
sequence. The token used is the :obj:`cls_token`.
eos_token (:obj:`str`, `optional`, defaults to :obj:`"</s>"`):
The end of sequence token.
.. note::
When building a sequence using special tokens, this is not the token that is used for the end of
sequence. The token used is the :obj:`sep_token`.
sep_token (:obj:`str`, `optional`, defaults to :obj:`"</s>"`):
The separator token, which is used when building a sequence from multiple sequences, e.g. two sequences for
sequence classification or for a text and a question for question answering. It is also used as the last
token of a sequence built with special tokens.
cls_token (:obj:`str`, `optional`, defaults to :obj:`"<s>"`):
The classifier token which is used when doing sequence classification (classification of the whole sequence
instead of per-token classification). It is the first token of the sequence when built with special tokens.
unk_token (:obj:`str`, `optional`, defaults to :obj:`"<unk>"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
pad_token (:obj:`str`, `optional`, defaults to :obj:`"<pad>"`):
The token used for padding, for example when batching sequences of different lengths.
mask_token (:obj:`str`, `optional`, defaults to :obj:`"<mask>"`):
The token used for masking values. This is the token used when training this model with masked language
modeling. This is the token which the model will try to predict.
"""
vocab_files_names = VOCAB_FILES_NAMES
pretrained_vocab_files_map = PRETRAINED_VOCAB_FILES_MAP
max_model_input_sizes = PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES
def __init__(
self,
vocab_file,
merges_file,
bos_token="<s>",
eos_token="</s>",
sep_token="</s>",
cls_token="<s>",
unk_token="<unk>",
pad_token="<pad>",
mask_token="<mask>",
**kwargs
):
super().__init__(
bos_token=bos_token,
eos_token=eos_token,
unk_token=unk_token,
sep_token=sep_token,
cls_token=cls_token,
pad_token=pad_token,
mask_token=mask_token,
**kwargs,
)
self.vocab_file = vocab_file
self.merges_file = merges_file
self.encoder = {}
self.encoder[self.bos_token] = 0
self.encoder[self.pad_token] = 1
self.encoder[self.eos_token] = 2
self.encoder[self.unk_token] = 3
self.add_from_file(vocab_file)
self.decoder = {v: k for k, v in self.encoder.items()}
with open(merges_file, encoding="utf-8") as merges_handle:
merges = merges_handle.read().split("\n")[:-1]
merges = [tuple(merge.split()[:-1]) for merge in merges]
self.bpe_ranks = dict(zip(merges, range(len(merges))))
self.cache = {}
def build_inputs_with_special_tokens(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Build model inputs from a sequence or a pair of sequence for sequence classification tasks by concatenating and
adding special tokens. A PhoBERT sequence has the following format:
- single sequence: ``<s> X </s>``
- pair of sequences: ``<s> A </s></s> B </s>``
Args:
token_ids_0 (:obj:`List[int]`):
List of IDs to which the special tokens will be added.
token_ids_1 (:obj:`List[int]`, `optional`):
Optional second list of IDs for sequence pairs.
Returns:
:obj:`List[int]`: List of `input IDs <../glossary.html#input-ids>`__ with the appropriate special tokens.
"""
if token_ids_1 is None:
return [self.cls_token_id] + token_ids_0 + [self.sep_token_id]
cls = [self.cls_token_id]
sep = [self.sep_token_id]
return cls + token_ids_0 + sep + sep + token_ids_1 + sep
def get_special_tokens_mask(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None, already_has_special_tokens: bool = False
) -> List[int]:
"""
Retrieve sequence ids from a token list that has no special tokens added. This method is called when adding
special tokens using the tokenizer ``prepare_for_model`` method.
Args:
token_ids_0 (:obj:`List[int]`):
List of IDs.
token_ids_1 (:obj:`List[int]`, `optional`):
Optional second list of IDs for sequence pairs.
already_has_special_tokens (:obj:`bool`, `optional`, defaults to :obj:`False`):
Whether or not the token list is already formatted with special tokens for the model.
Returns:
:obj:`List[int]`: A list of integers in the range [0, 1]: 1 for a special token, 0 for a sequence token.
"""
if already_has_special_tokens:
if token_ids_1 is not None:
raise ValueError(
"You should not supply a second sequence if the provided sequence of "
"ids is already formatted with special tokens for the model."
)
return list(map(lambda x: 1 if x in [self.sep_token_id, self.cls_token_id] else 0, token_ids_0))
if token_ids_1 is None:
return [1] + ([0] * len(token_ids_0)) + [1]
return [1] + ([0] * len(token_ids_0)) + [1, 1] + ([0] * len(token_ids_1)) + [1]
def create_token_type_ids_from_sequences(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Create a mask from the two sequences passed to be used in a sequence-pair classification task. PhoBERT does not
make use of token type ids, therefore a list of zeros is returned.
Args:
token_ids_0 (:obj:`List[int]`):
List of IDs.
token_ids_1 (:obj:`List[int]`, `optional`):
Optional second list of IDs for sequence pairs.
Returns:
:obj:`List[int]`: List of zeros.
"""
sep = [self.sep_token_id]
cls = [self.cls_token_id]
if token_ids_1 is None:
return len(cls + token_ids_0 + sep) * [0]
return len(cls + token_ids_0 + sep + sep + token_ids_1 + sep) * [0]
@property
def vocab_size(self):
return len(self.encoder)
def get_vocab(self):
return dict(self.encoder, **self.added_tokens_encoder)
def bpe(self, token):
if token in self.cache:
return self.cache[token]
word = tuple(token)
word = tuple(list(word[:-1]) + [word[-1] + "</w>"])
pairs = get_pairs(word)
if not pairs:
return token
while True:
bigram = min(pairs, key=lambda pair: self.bpe_ranks.get(pair, float("inf")))
if bigram not in self.bpe_ranks:
break
first, second = bigram
new_word = []
i = 0
while i < len(word):
try:
j = word.index(first, i)
except ValueError:
new_word.extend(word[i:])
break
else:
new_word.extend(word[i:j])
i = j
if word[i] == first and i < len(word) - 1 and word[i + 1] == second:
new_word.append(first + second)
i += 2
else:
new_word.append(word[i])
i += 1
new_word = tuple(new_word)
word = new_word
if len(word) == 1:
break
else:
pairs = get_pairs(word)
word = "@@ ".join(word)
word = word[:-4]
self.cache[token] = word
return word
def _tokenize(self, text):
"""Tokenize a string."""
split_tokens = []
words = re.findall(r"\S+\n?", text)
for token in words:
split_tokens.extend([t for t in self.bpe(token).split(" ")])
return split_tokens
def _convert_token_to_id(self, token):
""" Converts a token (str) in an id using the vocab. """
return self.encoder.get(token, self.encoder.get(self.unk_token))
def _convert_id_to_token(self, index):
"""Converts an index (integer) in a token (str) using the vocab."""
return self.decoder.get(index, self.unk_token)
def convert_tokens_to_string(self, tokens):
""" Converts a sequence of tokens (string) in a single string. """
out_string = " ".join(tokens).replace("@@ ", "").strip()
return out_string
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
if not os.path.isdir(save_directory):
logger.error("Vocabulary path ({}) should be a directory".format(save_directory))
return
out_vocab_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["vocab_file"]
)
out_merge_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["merges_file"]
)
if os.path.abspath(self.vocab_file) != os.path.abspath(out_vocab_file):
copyfile(self.vocab_file, out_vocab_file)
if os.path.abspath(self.merges_file) != os.path.abspath(out_merge_file):
copyfile(self.merges_file, out_merge_file)
return out_vocab_file, out_merge_file
# def decode(self, token_ids, skip_special_tokens=False, clean_up_tokenization_spaces=True):
# filtered_tokens = ' '.join(self.convert_ids_to_tokens(token_ids, skip_special_tokens=skip_special_tokens))
# tokens_generated_so_far = re.sub('(@@ )', '', string=filtered_tokens)
# tokens_generated_so_far = re.sub('(@@ ?$)', '', string=tokens_generated_so_far)
# return ''.join(tokens_generated_so_far)
def add_from_file(self, f):
"""
Loads a pre-existing dictionary from a text file and adds its symbols to this instance.
"""
if isinstance(f, str):
try:
with open(f, "r", encoding="utf-8") as fd:
self.add_from_file(fd)
except FileNotFoundError as fnfe:
raise fnfe
except UnicodeError:
raise Exception("Incorrect encoding detected in {}, please " "rebuild the dataset".format(f))
return
lines = f.readlines()
for lineTmp in lines:
line = lineTmp.strip()
idx = line.rfind(" ")
if idx == -1:
raise ValueError("Incorrect dictionary format, expected '<token> <cnt>'")
word = line[:idx]
self.encoder[word] = len(self.encoder)
|
AdaMix/src/transformers/models/phobert/tokenization_phobert.py/0
|
{
"file_path": "AdaMix/src/transformers/models/phobert/tokenization_phobert.py",
"repo_id": "AdaMix",
"token_count": 6318
}
| 60 |
# coding=utf-8
# Copyright 2020, The RAG Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" RAG model configuration """
import copy
from ...configuration_utils import PretrainedConfig
from ...file_utils import add_start_docstrings
RAG_CONFIG_DOC = r"""
:class:`~transformers.RagConfig` stores the configuration of a `RagModel`. Configuration objects inherit from
:class:`~transformers.PretrainedConfig` and can be used to control the model outputs. Read the documentation from
:class:`~transformers.PretrainedConfig` for more information.
Args:
title_sep (:obj:`str`, `optional`, defaults to ``" / "``):
Separator inserted between the title and the text of the retrieved document when calling
:class:`~transformers.RagRetriever`.
doc_sep (:obj:`str`, `optional`, defaults to ``" // "``):
Separator inserted between the the text of the retrieved document and the original input when calling
:class:`~transformers.RagRetriever`.
n_docs (:obj:`int`, `optional`, defaults to 5):
Number of documents to retrieve.
max_combined_length (:obj:`int`, `optional`, defaults to 300):
Max length of contextualized input returned by :meth:`~transformers.RagRetriever.__call__`.
retrieval_vector_size (:obj:`int`, `optional`, defaults to 768):
Dimensionality of the document embeddings indexed by :class:`~transformers.RagRetriever`.
retrieval_batch_size (:obj:`int`, `optional`, defaults to 8):
Retrieval batch size, defined as the number of queries issues concurrently to the faiss index encapsulated
:class:`~transformers.RagRetriever`.
dataset (:obj:`str`, `optional`, defaults to :obj:`"wiki_dpr"`):
A dataset identifier of the indexed dataset in HuggingFace Datasets (list all available datasets and ids
using :obj:`datasets.list_datasets()`).
dataset_split (:obj:`str`, `optional`, defaults to :obj:`"train"`)
Which split of the :obj:`dataset` to load.
index_name (:obj:`str`, `optional`, defaults to :obj:`"compressed"`)
The index name of the index associated with the :obj:`dataset`. One can choose between :obj:`"legacy"`,
:obj:`"exact"` and :obj:`"compressed"`.
index_path (:obj:`str`, `optional`)
The path to the serialized faiss index on disk.
passages_path: (:obj:`str`, `optional`):
A path to text passages compatible with the faiss index. Required if using
:class:`~transformers.models.rag.retrieval_rag.LegacyIndex`
use_dummy_dataset (:obj:`bool`, `optional`, defaults to ``False``)
Whether to load a "dummy" variant of the dataset specified by :obj:`dataset`.
label_smoothing (:obj:`float`, `optional`, defaults to 0.0):
Only relevant if ``return_loss`` is set to :obj:`True`. Controls the ``epsilon`` parameter value for label
smoothing in the loss calculation. If set to 0, no label smoothing is performed.
do_marginalize (:obj:`bool`, `optional`, defaults to :obj:`False`):
If :obj:`True`, the logits are marginalized over all documents by making use of
``torch.nn.functional.log_softmax``.
reduce_loss (:obj:`bool`, `optional`, defaults to :obj:`False`):
Whether or not to reduce the NLL loss using the ``torch.Tensor.sum`` operation.
do_deduplication (:obj:`bool`, `optional`, defaults to :obj:`True`):
Whether or not to deduplicate the generations from different context documents for a given input. Has to be
set to :obj:`False` if used while training with distributed backend.
exclude_bos_score (:obj:`bool`, `optional`, defaults to :obj:`False`):
Whether or not to disregard the BOS token when computing the loss.
output_retrieved(:obj:`bool`, `optional`, defaults to :obj:`False`):
If set to ``True``, :obj:`retrieved_doc_embeds`, :obj:`retrieved_doc_ids`, :obj:`context_input_ids` and
:obj:`context_attention_mask` are returned. See returned tensors for more detail.
use_cache (:obj:`bool`, `optional`, defaults to :obj:`True`):
Whether or not the model should return the last key/values attentions (not used by all models).
forced_eos_token_id (:obj:`int`, `optional`):
The id of the token to force as the last generated token when :obj:`max_length` is reached. Usually set to
:obj:`eos_token_id`.
"""
@add_start_docstrings(RAG_CONFIG_DOC)
class RagConfig(PretrainedConfig):
model_type = "rag"
is_composition = True
def __init__(
self,
vocab_size=None,
is_encoder_decoder=True,
prefix=None,
bos_token_id=None,
pad_token_id=None,
eos_token_id=None,
decoder_start_token_id=None,
title_sep=" / ",
doc_sep=" // ",
n_docs=5,
max_combined_length=300,
retrieval_vector_size=768,
retrieval_batch_size=8,
dataset="wiki_dpr",
dataset_split="train",
index_name="compressed",
index_path=None,
passages_path=None,
use_dummy_dataset=False,
reduce_loss=False,
label_smoothing=0.0,
do_deduplication=True,
exclude_bos_score=False,
do_marginalize=False,
output_retrieved=False,
use_cache=True,
forced_eos_token_id=None,
**kwargs
):
super().__init__(
bos_token_id=bos_token_id,
pad_token_id=pad_token_id,
eos_token_id=eos_token_id,
decoder_start_token_id=decoder_start_token_id,
forced_eos_token_id=forced_eos_token_id,
is_encoder_decoder=is_encoder_decoder,
prefix=prefix,
vocab_size=vocab_size,
**kwargs,
)
assert (
"question_encoder" in kwargs and "generator" in kwargs
), "Config has to be initialized with question_encoder and generator config"
question_encoder_config = kwargs.pop("question_encoder")
question_encoder_model_type = question_encoder_config.pop("model_type")
decoder_config = kwargs.pop("generator")
decoder_model_type = decoder_config.pop("model_type")
from ..auto.configuration_auto import AutoConfig
self.question_encoder = AutoConfig.for_model(question_encoder_model_type, **question_encoder_config)
self.generator = AutoConfig.for_model(decoder_model_type, **decoder_config)
self.reduce_loss = reduce_loss
self.label_smoothing = label_smoothing
self.exclude_bos_score = exclude_bos_score
self.do_marginalize = do_marginalize
self.title_sep = title_sep
self.doc_sep = doc_sep
self.n_docs = n_docs
self.max_combined_length = max_combined_length
self.dataset = dataset
self.dataset_split = dataset_split
self.index_name = index_name
self.retrieval_vector_size = retrieval_vector_size
self.retrieval_batch_size = retrieval_batch_size
self.passages_path = passages_path
self.index_path = index_path
self.use_dummy_dataset = use_dummy_dataset
self.output_retrieved = output_retrieved
self.do_deduplication = do_deduplication
self.use_cache = use_cache
if self.forced_eos_token_id is None:
self.forced_eos_token_id = getattr(self.generator, "forced_eos_token_id", None)
@classmethod
def from_question_encoder_generator_configs(
cls, question_encoder_config: PretrainedConfig, generator_config: PretrainedConfig, **kwargs
) -> PretrainedConfig:
r"""
Instantiate a :class:`~transformers.EncoderDecoderConfig` (or a derived class) from a pre-trained encoder model
configuration and decoder model configuration.
Returns:
:class:`EncoderDecoderConfig`: An instance of a configuration object
"""
return cls(question_encoder=question_encoder_config.to_dict(), generator=generator_config.to_dict(), **kwargs)
def to_dict(self):
"""
Serializes this instance to a Python dictionary. Override the default
:meth:`~transformers.PretrainedConfig.to_dict`.
Returns:
:obj:`Dict[str, any]`: Dictionary of all the attributes that make up this configuration instance,
"""
output = copy.deepcopy(self.__dict__)
output["question_encoder"] = self.question_encoder.to_dict()
output["generator"] = self.generator.to_dict()
output["model_type"] = self.__class__.model_type
return output
|
AdaMix/src/transformers/models/rag/configuration_rag.py/0
|
{
"file_path": "AdaMix/src/transformers/models/rag/configuration_rag.py",
"repo_id": "AdaMix",
"token_count": 3771
}
| 61 |
# coding=utf-8
# Copyright 2018 The Google AI Language Team Authors and The HuggingFace Inc. team.
# Copyright (c) 2018, NVIDIA CORPORATION. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" RoBERTa configuration """
from ...utils import logging
from ..bert.configuration_bert import BertConfig
logger = logging.get_logger(__name__)
ROBERTA_PRETRAINED_CONFIG_ARCHIVE_MAP = {
"roberta-base": "https://huggingface.co/roberta-base/resolve/main/config.json",
"roberta-large": "https://huggingface.co/roberta-large/resolve/main/config.json",
"roberta-large-mnli": "https://huggingface.co/roberta-large-mnli/resolve/main/config.json",
"distilroberta-base": "https://huggingface.co/distilroberta-base/resolve/main/config.json",
"roberta-base-openai-detector": "https://huggingface.co/roberta-base-openai-detector/resolve/main/config.json",
"roberta-large-openai-detector": "https://huggingface.co/roberta-large-openai-detector/resolve/main/config.json",
}
class RobertaConfig(BertConfig):
r"""
This is the configuration class to store the configuration of a :class:`~transformers.RobertaModel` or a
:class:`~transformers.TFRobertaModel`. It is used to instantiate a RoBERTa model according to the specified
arguments, defining the model architecture.
Configuration objects inherit from :class:`~transformers.PretrainedConfig` and can be used to control the model
outputs. Read the documentation from :class:`~transformers.PretrainedConfig` for more information.
The :class:`~transformers.RobertaConfig` class directly inherits :class:`~transformers.BertConfig`. It reuses the
same defaults. Please check the parent class for more information.
Examples::
>>> from transformers import RobertaConfig, RobertaModel
>>> # Initializing a RoBERTa configuration
>>> configuration = RobertaConfig()
>>> # Initializing a model from the configuration
>>> model = RobertaModel(configuration)
>>> # Accessing the model configuration
>>> configuration = model.config
"""
model_type = "roberta"
def __init__(self, pad_token_id=1, bos_token_id=0, eos_token_id=2, **kwargs):
"""Constructs RobertaConfig."""
super().__init__(pad_token_id=pad_token_id, bos_token_id=bos_token_id, eos_token_id=eos_token_id, **kwargs)
|
AdaMix/src/transformers/models/roberta/configuration_roberta.py/0
|
{
"file_path": "AdaMix/src/transformers/models/roberta/configuration_roberta.py",
"repo_id": "AdaMix",
"token_count": 953
}
| 62 |
# coding=utf-8
# Copyright 2021 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
Speech processor class for Speech2Text
"""
from contextlib import contextmanager
from .feature_extraction_speech_to_text import Speech2TextFeatureExtractor
from .tokenization_speech_to_text import Speech2TextTokenizer
class Speech2TextProcessor:
r"""
Constructs a Speech2Text processor which wraps a Speech2Text feature extractor and a Speech2Text tokenizer into a
single processor.
:class:`~transformers.Speech2TextProcessor` offers all the functionalities of
:class:`~transformers.Speech2TextFeatureExtractor` and :class:`~transformers.Speech2TextTokenizer`. See the
:meth:`~transformers.Speech2TextProcessor.__call__` and :meth:`~transformers.Speech2TextProcessor.decode` for more
information.
Args:
feature_extractor (:obj:`Speech2TextFeatureExtractor`):
An instance of :class:`~transformers.Speech2TextFeatureExtractor`. The feature extractor is a required
input.
tokenizer (:obj:`Speech2TextTokenizer`):
An instance of :class:`~transformers.Speech2TextTokenizer`. The tokenizer is a required input.
"""
def __init__(self, feature_extractor, tokenizer):
if not isinstance(feature_extractor, Speech2TextFeatureExtractor):
raise ValueError(
f"`feature_extractor` has to be of type {Speech2TextFeatureExtractor.__class__}, but is {type(feature_extractor)}"
)
if not isinstance(tokenizer, Speech2TextTokenizer):
raise ValueError(
f"`tokenizer` has to be of type {Speech2TextTokenizer.__class__}, but is {type(tokenizer)}"
)
self.feature_extractor = feature_extractor
self.tokenizer = tokenizer
self.current_processor = self.feature_extractor
def save_pretrained(self, save_directory):
"""
Save a Speech2Text feature extractor object and Speech2Text tokenizer object to the directory
``save_directory``, so that it can be re-loaded using the
:func:`~transformers.Speech2TextProcessor.from_pretrained` class method.
.. note::
This class method is simply calling :meth:`~transformers.PreTrainedFeatureExtractor.save_pretrained` and
:meth:`~transformers.tokenization_utils_base.PreTrainedTokenizer.save_pretrained`. Please refer to the
docstrings of the methods above for more information.
Args:
save_directory (:obj:`str` or :obj:`os.PathLike`):
Directory where the feature extractor JSON file and the tokenizer files will be saved (directory will
be created if it does not exist).
"""
self.feature_extractor.save_pretrained(save_directory)
self.tokenizer.save_pretrained(save_directory)
@classmethod
def from_pretrained(cls, pretrained_model_name_or_path, **kwargs):
r"""
Instantiate a :class:`~transformers.Speech2TextProcessor` from a pretrained Speech2Text processor.
.. note::
This class method is simply calling Speech2TextFeatureExtractor's
:meth:`~transformers.PreTrainedFeatureExtractor.from_pretrained` and Speech2TextTokenizer's
:meth:`~transformers.tokenization_utils_base.PreTrainedTokenizer.from_pretrained`. Please refer to the
docstrings of the methods above for more information.
Args:
pretrained_model_name_or_path (:obj:`str` or :obj:`os.PathLike`):
This can be either:
- a string, the `model id` of a pretrained feature_extractor hosted inside a model repo on
huggingface.co. Valid model ids can be located at the root-level, like ``bert-base-uncased``, or
namespaced under a user or organization name, like ``dbmdz/bert-base-german-cased``.
- a path to a `directory` containing a feature extractor file saved using the
:meth:`~transformers.PreTrainedFeatureExtractor.save_pretrained` method, e.g.,
``./my_model_directory/``.
- a path or url to a saved feature extractor JSON `file`, e.g.,
``./my_model_directory/feature_extraction_config.json``.
**kwargs
Additional keyword arguments passed along to both :class:`~transformers.PreTrainedFeatureExtractor` and
:class:`~transformers.PreTrainedTokenizer`
"""
feature_extractor = Speech2TextFeatureExtractor.from_pretrained(pretrained_model_name_or_path, **kwargs)
tokenizer = Speech2TextTokenizer.from_pretrained(pretrained_model_name_or_path, **kwargs)
return cls(feature_extractor=feature_extractor, tokenizer=tokenizer)
def __call__(self, *args, **kwargs):
"""
When used in normal mode, this method forwards all its arguments to Speech2TextFeatureExtractor's
:meth:`~transformers.Speech2TextFeatureExtractor.__call__` and returns its output. If used in the context
:meth:`~transformers.Speech2TextProcessor.as_target_processor` this method forwards all its arguments to
Speech2TextTokenizer's :meth:`~transformers.Speech2TextTokenizer.__call__`. Please refer to the doctsring of
the above two methods for more information.
"""
return self.current_processor(*args, **kwargs)
def batch_decode(self, *args, **kwargs):
"""
This method forwards all its arguments to Speech2TextTokenizer's
:meth:`~transformers.PreTrainedTokenizer.batch_decode`. Please refer to the docstring of this method for more
information.
"""
return self.tokenizer.batch_decode(*args, **kwargs)
def decode(self, *args, **kwargs):
"""
This method forwards all its arguments to Speech2TextTokenizer's
:meth:`~transformers.PreTrainedTokenizer.decode`. Please refer to the docstring of this method for more
information.
"""
return self.tokenizer.decode(*args, **kwargs)
@contextmanager
def as_target_processor(self):
"""
Temporarily sets the tokenizer for processing the input. Useful for encoding the labels when fine-tuning
Speech2Text.
"""
self.current_processor = self.tokenizer
yield
self.current_processor = self.feature_extractor
|
AdaMix/src/transformers/models/speech_to_text/processing_speech_to_text.py/0
|
{
"file_path": "AdaMix/src/transformers/models/speech_to_text/processing_speech_to_text.py",
"repo_id": "AdaMix",
"token_count": 2597
}
| 63 |
# coding=utf-8
# Copyright 2020 Google Research and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
""" Tokenization class for TAPAS model."""
import collections
import datetime
import enum
import itertools
import math
import os
import re
import unicodedata
from dataclasses import dataclass
from typing import Callable, Dict, Generator, List, Optional, Text, Tuple, Union
import numpy as np
from ...file_utils import ExplicitEnum, PaddingStrategy, TensorType, add_end_docstrings, is_pandas_available
from ...tokenization_utils import PreTrainedTokenizer, _is_control, _is_punctuation, _is_whitespace
from ...tokenization_utils_base import (
ENCODE_KWARGS_DOCSTRING,
BatchEncoding,
EncodedInput,
PreTokenizedInput,
TextInput,
)
from ...utils import logging
if is_pandas_available():
import pandas as pd
logger = logging.get_logger(__name__)
VOCAB_FILES_NAMES = {"vocab_file": "vocab.txt"}
PRETRAINED_VOCAB_FILES_MAP = {
"vocab_file": {
# large models
"google/tapas-large-finetuned-sqa": "https://huggingface.co/google/tapas-large-finetuned-sqa/resolve/main/vocab.txt",
"google/tapas-large-finetuned-wtq": "https://huggingface.co/google/tapas-large-finetuned-wtq/resolve/main/vocab.txt",
"google/tapas-large-finetuned-wikisql-supervised": "https://huggingface.co/google/tapas-large-finetuned-wikisql-supervised/resolve/main/vocab.txt",
"google/tapas-large-finetuned-tabfact": "https://huggingface.co/google/tapas-large-finetuned-tabfact/resolve/main/vocab.txt",
# base models
"google/tapas-base-finetuned-sqa": "https://huggingface.co/google/tapas-base-finetuned-sqa/resolve/main/vocab.txt",
"google/tapas-base-finetuned-wtq": "https://huggingface.co/google/tapas-base-finetuned-wtq/resolve/main/vocab.txt",
"google/tapas-base-finetuned-wikisql-supervised": "https://huggingface.co/google/tapas-base-finetuned-wikisql-supervised/resolve/main/vocab.txt",
"google/tapas-base-finetuned-tabfact": "https://huggingface.co/google/tapas-base-finetuned-tabfact/resolve/main/vocab.txt",
# medium models
"google/tapas-medium-finetuned-sqa": "https://huggingface.co/google/tapas-medium-finetuned-sqa/resolve/main/vocab.txt",
"google/tapas-medium-finetuned-wtq": "https://huggingface.co/google/tapas-medium-finetuned-wtq/resolve/main/vocab.txt",
"google/tapas-medium-finetuned-wikisql-supervised": "https://huggingface.co/google/tapas-medium-finetuned-wikisql-supervised/resolve/main/vocab.txt",
"google/tapas-medium-finetuned-tabfact": "https://huggingface.co/google/tapas-medium-finetuned-tabfact/resolve/main/vocab.txt",
# small models
"google/tapas-small-finetuned-sqa": "https://huggingface.co/google/tapas-small-finetuned-sqa/resolve/main/vocab.txt",
"google/tapas-small-finetuned-wtq": "https://huggingface.co/google/tapas-small-finetuned-wtq/resolve/main/vocab.txt",
"google/tapas-small-finetuned-wikisql-supervised": "https://huggingface.co/google/tapas-small-finetuned-wikisql-supervised/resolve/main/vocab.txt",
"google/tapas-small-finetuned-tabfact": "https://huggingface.co/google/tapas-small-finetuned-tabfact/resolve/main/vocab.txt",
# tiny models
"google/tapas-tiny-finetuned-sqa": "https://huggingface.co/google/tapas-tiny-finetuned-sqa/resolve/main/vocab.txt",
"google/tapas-tiny-finetuned-wtq": "https://huggingface.co/google/tapas-tiny-finetuned-wtq/resolve/main/vocab.txt",
"google/tapas-tiny-finetuned-wikisql-supervised": "https://huggingface.co/google/tapas-tiny-finetuned-wikisql-supervised/resolve/main/vocab.txt",
"google/tapas-tiny-finetuned-tabfact": "https://huggingface.co/google/tapas-tiny-finetuned-tabfact/resolve/main/vocab.txt",
# mini models
"google/tapas-mini-finetuned-sqa": "https://huggingface.co/google/tapas-mini-finetuned-sqa/resolve/main/vocab.txt",
"google/tapas-mini-finetuned-wtq": "https://huggingface.co/google/tapas-mini-finetuned-wtq/resolve/main/vocab.txt",
"google/tapas-mini-finetuned-wikisql-supervised": "https://huggingface.co/google/tapas-mini-finetuned-wikisql-supervised/resolve/main/vocab.txt",
"google/tapas-mini-finetuned-tabfact": "https://huggingface.co/google/tapas-mini-finetuned-tabfact/resolve/main/vocab.txt",
}
}
PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES = {name: 512 for name in PRETRAINED_VOCAB_FILES_MAP.keys()}
PRETRAINED_INIT_CONFIGURATION = {name: {"do_lower_case": True} for name in PRETRAINED_VOCAB_FILES_MAP.keys()}
class TapasTruncationStrategy(ExplicitEnum):
"""
Possible values for the ``truncation`` argument in :meth:`~transformers.TapasTokenizer.__call__`. Useful for
tab-completion in an IDE.
"""
DROP_ROWS_TO_FIT = "drop_rows_to_fit"
DO_NOT_TRUNCATE = "do_not_truncate"
TableValue = collections.namedtuple("TokenValue", ["token", "column_id", "row_id"])
@dataclass(frozen=True)
class TokenCoordinates:
column_index: int
row_index: int
token_index: int
@dataclass
class TokenizedTable:
rows: List[List[List[Text]]]
selected_tokens: List[TokenCoordinates]
@dataclass(frozen=True)
class SerializedExample:
tokens: List[Text]
column_ids: List[int]
row_ids: List[int]
segment_ids: List[int]
def _is_inner_wordpiece(token: Text):
return token.startswith("##")
def load_vocab(vocab_file):
"""Loads a vocabulary file into a dictionary."""
vocab = collections.OrderedDict()
with open(vocab_file, "r", encoding="utf-8") as reader:
tokens = reader.readlines()
for index, token in enumerate(tokens):
token = token.rstrip("\n")
vocab[token] = index
return vocab
def whitespace_tokenize(text):
"""Runs basic whitespace cleaning and splitting on a piece of text."""
text = text.strip()
if not text:
return []
tokens = text.split()
return tokens
TAPAS_ENCODE_PLUS_ADDITIONAL_KWARGS_DOCSTRING = r"""
add_special_tokens (:obj:`bool`, `optional`, defaults to :obj:`True`):
Whether or not to encode the sequences with the special tokens relative to their model.
padding (:obj:`bool`, :obj:`str` or :class:`~transformers.file_utils.PaddingStrategy`, `optional`, defaults to :obj:`False`):
Activates and controls padding. Accepts the following values:
* :obj:`True` or :obj:`'longest'`: Pad to the longest sequence in the batch (or no padding if only a
single sequence if provided).
* :obj:`'max_length'`: Pad to a maximum length specified with the argument :obj:`max_length` or to the
maximum acceptable input length for the model if that argument is not provided.
* :obj:`False` or :obj:`'do_not_pad'` (default): No padding (i.e., can output a batch with sequences of
different lengths).
truncation (:obj:`bool`, :obj:`str` or :class:`~transformers.TapasTruncationStrategy`, `optional`, defaults to :obj:`False`):
Activates and controls truncation. Accepts the following values:
* :obj:`True` or :obj:`'drop_rows_to_fit'`: Truncate to a maximum length specified with the argument
:obj:`max_length` or to the maximum acceptable input length for the model if that argument is not
provided. This will truncate row by row, removing rows from the table.
* :obj:`False` or :obj:`'do_not_truncate'` (default): No truncation (i.e., can output batch with
sequence lengths greater than the model maximum admissible input size).
max_length (:obj:`int`, `optional`):
Controls the maximum length to use by one of the truncation/padding parameters.
If left unset or set to :obj:`None`, this will use the predefined model maximum length if a maximum
length is required by one of the truncation/padding parameters. If the model has no specific maximum
input length (like XLNet) truncation/padding to a maximum length will be deactivated.
is_split_into_words (:obj:`bool`, `optional`, defaults to :obj:`False`):
Whether or not the input is already pre-tokenized (e.g., split into words), in which case the tokenizer
will skip the pre-tokenization step. This is useful for NER or token classification.
pad_to_multiple_of (:obj:`int`, `optional`):
If set will pad the sequence to a multiple of the provided value. This is especially useful to enable
the use of Tensor Cores on NVIDIA hardware with compute capability >= 7.5 (Volta).
return_tensors (:obj:`str` or :class:`~transformers.file_utils.TensorType`, `optional`):
If set, will return tensors instead of list of python integers. Acceptable values are:
* :obj:`'tf'`: Return TensorFlow :obj:`tf.constant` objects.
* :obj:`'pt'`: Return PyTorch :obj:`torch.Tensor` objects.
* :obj:`'np'`: Return Numpy :obj:`np.ndarray` objects.
"""
class TapasTokenizer(PreTrainedTokenizer):
r"""
Construct a TAPAS tokenizer. Based on WordPiece. Flattens a table and one or more related sentences to be used by
TAPAS models.
This tokenizer inherits from :class:`~transformers.PreTrainedTokenizer` which contains most of the main methods.
Users should refer to this superclass for more information regarding those methods.
:class:`~transformers.TapasTokenizer` creates several token type ids to encode tabular structure. To be more
precise, it adds 7 token type ids, in the following order: :obj:`segment_ids`, :obj:`column_ids`, :obj:`row_ids`,
:obj:`prev_labels`, :obj:`column_ranks`, :obj:`inv_column_ranks` and :obj:`numeric_relations`:
- segment_ids: indicate whether a token belongs to the question (0) or the table (1). 0 for special tokens and
padding.
- column_ids: indicate to which column of the table a token belongs (starting from 1). Is 0 for all question
tokens, special tokens and padding.
- row_ids: indicate to which row of the table a token belongs (starting from 1). Is 0 for all question tokens,
special tokens and padding. Tokens of column headers are also 0.
- prev_labels: indicate whether a token was (part of) an answer to the previous question (1) or not (0). Useful in
a conversational setup (such as SQA).
- column_ranks: indicate the rank of a table token relative to a column, if applicable. For example, if you have a
column "number of movies" with values 87, 53 and 69, then the column ranks of these tokens are 3, 1 and 2
respectively. 0 for all question tokens, special tokens and padding.
- inv_column_ranks: indicate the inverse rank of a table token relative to a column, if applicable. For example, if
you have a column "number of movies" with values 87, 53 and 69, then the inverse column ranks of these tokens are
1, 3 and 2 respectively. 0 for all question tokens, special tokens and padding.
- numeric_relations: indicate numeric relations between the question and the tokens of the table. 0 for all
question tokens, special tokens and padding.
:class:`~transformers.TapasTokenizer` runs end-to-end tokenization on a table and associated sentences: punctuation
splitting and wordpiece.
Args:
vocab_file (:obj:`str`):
File containing the vocabulary.
do_lower_case (:obj:`bool`, `optional`, defaults to :obj:`True`):
Whether or not to lowercase the input when tokenizing.
do_basic_tokenize (:obj:`bool`, `optional`, defaults to :obj:`True`):
Whether or not to do basic tokenization before WordPiece.
never_split (:obj:`Iterable`, `optional`):
Collection of tokens which will never be split during tokenization. Only has an effect when
:obj:`do_basic_tokenize=True`
unk_token (:obj:`str`, `optional`, defaults to :obj:`"[UNK]"`):
The unknown token. A token that is not in the vocabulary cannot be converted to an ID and is set to be this
token instead.
sep_token (:obj:`str`, `optional`, defaults to :obj:`"[SEP]"`):
The separator token, which is used when building a sequence from multiple sequences, e.g. two sequences for
sequence classification or for a text and a question for question answering. It is also used as the last
token of a sequence built with special tokens.
pad_token (:obj:`str`, `optional`, defaults to :obj:`"[PAD]"`):
The token used for padding, for example when batching sequences of different lengths.
cls_token (:obj:`str`, `optional`, defaults to :obj:`"[CLS]"`):
The classifier token which is used when doing sequence classification (classification of the whole sequence
instead of per-token classification). It is the first token of the sequence when built with special tokens.
mask_token (:obj:`str`, `optional`, defaults to :obj:`"[MASK]"`):
The token used for masking values. This is the token used when training this model with masked language
modeling. This is the token which the model will try to predict.
empty_token (:obj:`str`, `optional`, defaults to :obj:`"[EMPTY]"`):
The token used for empty cell values in a table. Empty cell values include "", "n/a", "nan" and "?".
tokenize_chinese_chars (:obj:`bool`, `optional`, defaults to :obj:`True`):
Whether or not to tokenize Chinese characters. This should likely be deactivated for Japanese (see this
`issue <https://github.com/huggingface/transformers/issues/328>`__).
strip_accents: (:obj:`bool`, `optional`):
Whether or not to strip all accents. If this option is not specified, then it will be determined by the
value for :obj:`lowercase` (as in the original BERT).
cell_trim_length (:obj:`int`, `optional`, defaults to -1):
If > 0: Trim cells so that the length is <= this value. Also disables further cell trimming, should thus be
used with :obj:`truncation` set to :obj:`True`.
max_column_id (:obj:`int`, `optional`):
Max column id to extract.
max_row_id (:obj:`int`, `optional`):
Max row id to extract.
strip_column_names (:obj:`bool`, `optional`, defaults to :obj:`False`):
Whether to add empty strings instead of column names.
update_answer_coordinates (:obj:`bool`, `optional`, defaults to :obj:`False`):
Whether to recompute the answer coordinates from the answer text.
"""
vocab_files_names = VOCAB_FILES_NAMES
pretrained_vocab_files_map = PRETRAINED_VOCAB_FILES_MAP
max_model_input_sizes = PRETRAINED_POSITIONAL_EMBEDDINGS_SIZES
def __init__(
self,
vocab_file,
do_lower_case=True,
do_basic_tokenize=True,
never_split=None,
unk_token="[UNK]",
sep_token="[SEP]",
pad_token="[PAD]",
cls_token="[CLS]",
mask_token="[MASK]",
empty_token="[EMPTY]",
tokenize_chinese_chars=True,
strip_accents=None,
cell_trim_length: int = -1,
max_column_id: int = None,
max_row_id: int = None,
strip_column_names: bool = False,
update_answer_coordinates: bool = False,
model_max_length: int = 512,
additional_special_tokens: Optional[List[str]] = None,
**kwargs
):
if not is_pandas_available():
raise ImportError("Pandas is required for the TAPAS tokenizer.")
if additional_special_tokens is not None:
if empty_token not in additional_special_tokens:
additional_special_tokens.append(empty_token)
else:
additional_special_tokens = [empty_token]
super().__init__(
do_lower_case=do_lower_case,
do_basic_tokenize=do_basic_tokenize,
never_split=never_split,
unk_token=unk_token,
sep_token=sep_token,
pad_token=pad_token,
cls_token=cls_token,
mask_token=mask_token,
empty_token=empty_token,
tokenize_chinese_chars=tokenize_chinese_chars,
strip_accents=strip_accents,
cell_trim_length=cell_trim_length,
max_column_id=max_column_id,
max_row_id=max_row_id,
strip_column_names=strip_column_names,
update_answer_coordinates=update_answer_coordinates,
model_max_length=model_max_length,
additional_special_tokens=additional_special_tokens,
**kwargs,
)
if not os.path.isfile(vocab_file):
raise ValueError(
"Can't find a vocabulary file at path '{}'. To load the vocabulary from a Google pretrained "
"model use `tokenizer = BertTokenizer.from_pretrained(PRETRAINED_MODEL_NAME)`".format(vocab_file)
)
self.vocab = load_vocab(vocab_file)
self.ids_to_tokens = collections.OrderedDict([(ids, tok) for tok, ids in self.vocab.items()])
self.do_basic_tokenize = do_basic_tokenize
if do_basic_tokenize:
self.basic_tokenizer = BasicTokenizer(
do_lower_case=do_lower_case,
never_split=never_split,
tokenize_chinese_chars=tokenize_chinese_chars,
strip_accents=strip_accents,
)
self.wordpiece_tokenizer = WordpieceTokenizer(vocab=self.vocab, unk_token=self.unk_token)
# Additional properties
self.cell_trim_length = cell_trim_length
self.max_column_id = max_column_id if max_column_id is not None else self.model_max_length
self.max_row_id = max_row_id if max_row_id is not None else self.model_max_length
self.strip_column_names = strip_column_names
self.update_answer_coordinates = update_answer_coordinates
@property
def do_lower_case(self):
return self.basic_tokenizer.do_lower_case
@property
def vocab_size(self):
return len(self.vocab)
def get_vocab(self):
return dict(self.vocab, **self.added_tokens_encoder)
def _tokenize(self, text):
if format_text(text) == EMPTY_TEXT:
return [self.additional_special_tokens[0]]
split_tokens = []
if self.do_basic_tokenize:
for token in self.basic_tokenizer.tokenize(text, never_split=self.all_special_tokens):
# If the token is part of the never_split set
if token in self.basic_tokenizer.never_split:
split_tokens.append(token)
else:
split_tokens += self.wordpiece_tokenizer.tokenize(token)
else:
split_tokens = self.wordpiece_tokenizer.tokenize(text)
return split_tokens
def _convert_token_to_id(self, token):
""" Converts a token (str) in an id using the vocab. """
return self.vocab.get(token, self.vocab.get(self.unk_token))
def _convert_id_to_token(self, index):
"""Converts an index (integer) in a token (str) using the vocab."""
return self.ids_to_tokens.get(index, self.unk_token)
def convert_tokens_to_string(self, tokens):
""" Converts a sequence of tokens (string) in a single string. """
out_string = " ".join(tokens).replace(" ##", "").strip()
return out_string
def save_vocabulary(self, save_directory: str, filename_prefix: Optional[str] = None) -> Tuple[str]:
index = 0
if os.path.isdir(save_directory):
vocab_file = os.path.join(
save_directory, (filename_prefix + "-" if filename_prefix else "") + VOCAB_FILES_NAMES["vocab_file"]
)
else:
vocab_file = (filename_prefix + "-" if filename_prefix else "") + save_directory
with open(vocab_file, "w", encoding="utf-8") as writer:
for token, token_index in sorted(self.vocab.items(), key=lambda kv: kv[1]):
if index != token_index:
logger.warning(
f"Saving vocabulary to {vocab_file}: vocabulary indices are not consecutive."
" Please check that the vocabulary is not corrupted!"
)
index = token_index
writer.write(token + "\n")
index += 1
return (vocab_file,)
def create_attention_mask_from_sequences(self, query_ids: List[int], table_values: List[TableValue]) -> List[int]:
"""
Creates the attention mask according to the query token IDs and a list of table values.
Args:
query_ids (:obj:`List[int]`): list of token IDs corresponding to the ID.
table_values (:obj:`List[TableValue]`): lift of table values, which are named tuples containing the
token value, the column ID and the row ID of said token.
Returns:
:obj:`List[int]`: List of ints containing the attention mask values.
"""
return [1] * (1 + len(query_ids) + 1 + len(table_values))
def create_segment_token_type_ids_from_sequences(
self, query_ids: List[int], table_values: List[TableValue]
) -> List[int]:
"""
Creates the segment token type IDs according to the query token IDs and a list of table values.
Args:
query_ids (:obj:`List[int]`): list of token IDs corresponding to the ID.
table_values (:obj:`List[TableValue]`): lift of table values, which are named tuples containing the
token value, the column ID and the row ID of said token.
Returns:
:obj:`List[int]`: List of ints containing the segment token type IDs values.
"""
table_ids = list(zip(*table_values))[0] if table_values else []
return [0] * (1 + len(query_ids) + 1) + [1] * len(table_ids)
def create_column_token_type_ids_from_sequences(
self, query_ids: List[int], table_values: List[TableValue]
) -> List[int]:
"""
Creates the column token type IDs according to the query token IDs and a list of table values.
Args:
query_ids (:obj:`List[int]`): list of token IDs corresponding to the ID.
table_values (:obj:`List[TableValue]`): lift of table values, which are named tuples containing the
token value, the column ID and the row ID of said token.
Returns:
:obj:`List[int]`: List of ints containing the column token type IDs values.
"""
table_column_ids = list(zip(*table_values))[1] if table_values else []
return [0] * (1 + len(query_ids) + 1) + list(table_column_ids)
def create_row_token_type_ids_from_sequences(
self, query_ids: List[int], table_values: List[TableValue]
) -> List[int]:
"""
Creates the row token type IDs according to the query token IDs and a list of table values.
Args:
query_ids (:obj:`List[int]`): list of token IDs corresponding to the ID.
table_values (:obj:`List[TableValue]`): lift of table values, which are named tuples containing the
token value, the column ID and the row ID of said token.
Returns:
:obj:`List[int]`: List of ints containing the row token type IDs values.
"""
table_row_ids = list(zip(*table_values))[2] if table_values else []
return [0] * (1 + len(query_ids) + 1) + list(table_row_ids)
def build_inputs_with_special_tokens(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None
) -> List[int]:
"""
Build model inputs from a question and flattened table for question answering or sequence classification tasks
by concatenating and adding special tokens.
Args:
token_ids_0 (:obj:`List[int]`): The ids of the question.
token_ids_1 (:obj:`List[int]`, `optional`): The ids of the flattened table.
Returns:
:obj:`List[int]`: The model input with special tokens.
"""
if token_ids_1 is None:
raise ValueError("With TAPAS, you must provide both question IDs and table IDs.")
return [self.cls_token_id] + token_ids_0 + [self.sep_token_id] + token_ids_1
def get_special_tokens_mask(
self, token_ids_0: List[int], token_ids_1: Optional[List[int]] = None, already_has_special_tokens: bool = False
) -> List[int]:
"""
Retrieve sequence ids from a token list that has no special tokens added. This method is called when adding
special tokens using the tokenizer ``prepare_for_model`` method.
Args:
token_ids_0 (:obj:`List[int]`):
List of question IDs.
token_ids_1 (:obj:`List[int]`, `optional`):
List of flattened table IDs.
already_has_special_tokens (:obj:`bool`, `optional`, defaults to :obj:`False`):
Whether or not the token list is already formatted with special tokens for the model.
Returns:
:obj:`List[int]`: A list of integers in the range [0, 1]: 1 for a special token, 0 for a sequence token.
"""
if already_has_special_tokens:
if token_ids_1 is not None:
raise ValueError(
"You should not supply a second sequence if the provided sequence of "
"ids is already formatted with special tokens for the model."
)
return list(map(lambda x: 1 if x in [self.sep_token_id, self.cls_token_id] else 0, token_ids_0))
if token_ids_1 is not None:
return [1] + ([0] * len(token_ids_0)) + [1] + ([0] * len(token_ids_1))
return [1] + ([0] * len(token_ids_0)) + [1]
@add_end_docstrings(TAPAS_ENCODE_PLUS_ADDITIONAL_KWARGS_DOCSTRING)
def __call__(
self,
table: "pd.DataFrame",
queries: Optional[
Union[
TextInput,
PreTokenizedInput,
EncodedInput,
List[TextInput],
List[PreTokenizedInput],
List[EncodedInput],
]
] = None,
answer_coordinates: Optional[Union[List[Tuple], List[List[Tuple]]]] = None,
answer_text: Optional[Union[List[TextInput], List[List[TextInput]]]] = None,
add_special_tokens: bool = True,
padding: Union[bool, str, PaddingStrategy] = False,
truncation: Union[bool, str, TapasTruncationStrategy] = False,
max_length: Optional[int] = None,
pad_to_multiple_of: Optional[int] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
return_token_type_ids: Optional[bool] = None,
return_attention_mask: Optional[bool] = None,
return_overflowing_tokens: bool = False,
return_special_tokens_mask: bool = False,
return_offsets_mapping: bool = False,
return_length: bool = False,
verbose: bool = True,
**kwargs
) -> BatchEncoding:
"""
Main method to tokenize and prepare for the model one or several sequence(s) related to a table.
Args:
table (:obj:`pd.DataFrame`):
Table containing tabular data. Note that all cell values must be text. Use `.astype(str)` on a Pandas
dataframe to convert it to string.
queries (:obj:`str` or :obj:`List[str]`):
Question or batch of questions related to a table to be encoded. Note that in case of a batch, all
questions must refer to the **same** table.
answer_coordinates (:obj:`List[Tuple]` or :obj:`List[List[Tuple]]`, `optional`):
Answer coordinates of each table-question pair in the batch. In case only a single table-question pair
is provided, then the answer_coordinates must be a single list of one or more tuples. Each tuple must
be a (row_index, column_index) pair. The first data row (not the column header row) has index 0. The
first column has index 0. In case a batch of table-question pairs is provided, then the
answer_coordinates must be a list of lists of tuples (each list corresponding to a single
table-question pair).
answer_text (:obj:`List[str]` or :obj:`List[List[str]]`, `optional`):
Answer text of each table-question pair in the batch. In case only a single table-question pair is
provided, then the answer_text must be a single list of one or more strings. Each string must be the
answer text of a corresponding answer coordinate. In case a batch of table-question pairs is provided,
then the answer_coordinates must be a list of lists of strings (each list corresponding to a single
table-question pair).
"""
assert isinstance(table, pd.DataFrame), "Table must be of type pd.DataFrame"
# Input type checking for clearer error
valid_query = False
# Check that query has a valid type
if queries is None or isinstance(queries, str):
valid_query = True
elif isinstance(queries, (list, tuple)):
if len(queries) == 0 or isinstance(queries[0], str):
valid_query = True
if not valid_query:
raise ValueError(
"queries input must of type `str` (single example), `List[str]` (batch or single pretokenized example). "
)
is_batched = isinstance(queries, (list, tuple))
if is_batched:
return self.batch_encode_plus(
table=table,
queries=queries,
answer_coordinates=answer_coordinates,
answer_text=answer_text,
add_special_tokens=add_special_tokens,
padding=padding,
truncation=truncation,
max_length=max_length,
pad_to_multiple_of=pad_to_multiple_of,
return_tensors=return_tensors,
return_token_type_ids=return_token_type_ids,
return_attention_mask=return_attention_mask,
return_overflowing_tokens=return_overflowing_tokens,
return_special_tokens_mask=return_special_tokens_mask,
return_offsets_mapping=return_offsets_mapping,
return_length=return_length,
verbose=verbose,
**kwargs,
)
else:
return self.encode_plus(
table=table,
query=queries,
answer_coordinates=answer_coordinates,
answer_text=answer_text,
add_special_tokens=add_special_tokens,
padding=padding,
truncation=truncation,
max_length=max_length,
pad_to_multiple_of=pad_to_multiple_of,
return_tensors=return_tensors,
return_token_type_ids=return_token_type_ids,
return_attention_mask=return_attention_mask,
return_overflowing_tokens=return_overflowing_tokens,
return_special_tokens_mask=return_special_tokens_mask,
return_offsets_mapping=return_offsets_mapping,
return_length=return_length,
verbose=verbose,
**kwargs,
)
@add_end_docstrings(ENCODE_KWARGS_DOCSTRING, TAPAS_ENCODE_PLUS_ADDITIONAL_KWARGS_DOCSTRING)
def batch_encode_plus(
self,
table: "pd.DataFrame",
queries: Optional[
Union[
List[TextInput],
List[PreTokenizedInput],
List[EncodedInput],
]
] = None,
answer_coordinates: Optional[List[List[Tuple]]] = None,
answer_text: Optional[List[List[TextInput]]] = None,
add_special_tokens: bool = True,
padding: Union[bool, str, PaddingStrategy] = False,
truncation: Union[bool, str, TapasTruncationStrategy] = False,
max_length: Optional[int] = None,
pad_to_multiple_of: Optional[int] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
return_token_type_ids: Optional[bool] = None,
return_attention_mask: Optional[bool] = None,
return_overflowing_tokens: bool = False,
return_special_tokens_mask: bool = False,
return_offsets_mapping: bool = False,
return_length: bool = False,
verbose: bool = True,
**kwargs
) -> BatchEncoding:
"""
Prepare a table and a list of strings for the model.
.. warning::
This method is deprecated, ``__call__`` should be used instead.
Args:
table (:obj:`pd.DataFrame`):
Table containing tabular data. Note that all cell values must be text. Use `.astype(str)` on a Pandas
dataframe to convert it to string.
queries (:obj:`List[str]`):
Batch of questions related to a table to be encoded. Note that all questions must refer to the **same**
table.
answer_coordinates (:obj:`List[Tuple]` or :obj:`List[List[Tuple]]`, `optional`):
Answer coordinates of each table-question pair in the batch. Each tuple must be a (row_index,
column_index) pair. The first data row (not the column header row) has index 0. The first column has
index 0. The answer_coordinates must be a list of lists of tuples (each list corresponding to a single
table-question pair).
answer_text (:obj:`List[str]` or :obj:`List[List[str]]`, `optional`):
Answer text of each table-question pair in the batch. In case a batch of table-question pairs is
provided, then the answer_coordinates must be a list of lists of strings (each list corresponding to a
single table-question pair). Each string must be the answer text of a corresponding answer coordinate.
"""
if return_token_type_ids is not None and not add_special_tokens:
raise ValueError(
"Asking to return token_type_ids while setting add_special_tokens to False "
"results in an undefined behavior. Please set add_special_tokens to True or "
"set return_token_type_ids to None."
)
if (answer_coordinates and not answer_text) or (not answer_coordinates and answer_text):
raise ValueError("In case you provide answers, both answer_coordinates and answer_text should be provided")
elif answer_coordinates is None and answer_text is None:
answer_coordinates = answer_text = [None] * len(queries)
if "is_split_into_words" in kwargs:
raise NotImplementedError("Currently TapasTokenizer only supports questions as strings.")
if return_offsets_mapping:
raise NotImplementedError(
"return_offset_mapping is not available when using Python tokenizers."
"To use this feature, change your tokenizer to one deriving from "
"transformers.PreTrainedTokenizerFast."
)
return self._batch_encode_plus(
table=table,
queries=queries,
answer_coordinates=answer_coordinates,
answer_text=answer_text,
add_special_tokens=add_special_tokens,
padding=padding,
truncation=truncation,
max_length=max_length,
pad_to_multiple_of=pad_to_multiple_of,
return_tensors=return_tensors,
return_token_type_ids=return_token_type_ids,
return_attention_mask=return_attention_mask,
return_overflowing_tokens=return_overflowing_tokens,
return_special_tokens_mask=return_special_tokens_mask,
return_offsets_mapping=return_offsets_mapping,
return_length=return_length,
verbose=verbose,
**kwargs,
)
def _batch_encode_plus(
self,
table,
queries: Union[
List[TextInput],
List[PreTokenizedInput],
List[EncodedInput],
],
answer_coordinates: Optional[List[List[Tuple]]] = None,
answer_text: Optional[List[List[TextInput]]] = None,
add_special_tokens: bool = True,
padding: Union[bool, str, PaddingStrategy] = False,
truncation: Union[bool, str, TapasTruncationStrategy] = False,
max_length: Optional[int] = None,
pad_to_multiple_of: Optional[int] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
return_token_type_ids: Optional[bool] = True,
return_attention_mask: Optional[bool] = None,
return_overflowing_tokens: bool = False,
return_special_tokens_mask: bool = False,
return_offsets_mapping: bool = False,
return_length: bool = False,
verbose: bool = True,
**kwargs
) -> BatchEncoding:
table_tokens = self._tokenize_table(table)
queries_tokens = []
for query in queries:
query_tokens = self.tokenize(query)
queries_tokens.append(query_tokens)
batch_outputs = self._batch_prepare_for_model(
table,
queries,
tokenized_table=table_tokens,
queries_tokens=queries_tokens,
answer_coordinates=answer_coordinates,
padding=padding,
truncation=truncation,
answer_text=answer_text,
add_special_tokens=add_special_tokens,
max_length=max_length,
pad_to_multiple_of=pad_to_multiple_of,
return_tensors=return_tensors,
prepend_batch_axis=True,
return_attention_mask=return_attention_mask,
return_token_type_ids=return_token_type_ids,
return_overflowing_tokens=return_overflowing_tokens,
return_special_tokens_mask=return_special_tokens_mask,
return_length=return_length,
verbose=verbose,
)
return BatchEncoding(batch_outputs)
def _batch_prepare_for_model(
self,
raw_table: "pd.DataFrame",
raw_queries: Union[
List[TextInput],
List[PreTokenizedInput],
List[EncodedInput],
],
tokenized_table: Optional[TokenizedTable] = None,
queries_tokens: Optional[List[List[str]]] = None,
answer_coordinates: Optional[List[List[Tuple]]] = None,
answer_text: Optional[List[List[TextInput]]] = None,
add_special_tokens: bool = True,
padding: Union[bool, str, PaddingStrategy] = False,
truncation: Union[bool, str, TapasTruncationStrategy] = False,
max_length: Optional[int] = None,
pad_to_multiple_of: Optional[int] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
return_token_type_ids: Optional[bool] = True,
return_attention_mask: Optional[bool] = True,
return_special_tokens_mask: bool = False,
return_offsets_mapping: bool = False,
return_length: bool = False,
verbose: bool = True,
prepend_batch_axis: bool = False,
**kwargs
) -> BatchEncoding:
batch_outputs = {}
for index, example in enumerate(zip(raw_queries, queries_tokens, answer_coordinates, answer_text)):
raw_query, query_tokens, answer_coords, answer_txt = example
outputs = self.prepare_for_model(
raw_table,
raw_query,
tokenized_table=tokenized_table,
query_tokens=query_tokens,
answer_coordinates=answer_coords,
answer_text=answer_txt,
add_special_tokens=add_special_tokens,
padding=PaddingStrategy.DO_NOT_PAD.value, # we pad in batch afterwards
truncation=truncation,
max_length=max_length,
pad_to_multiple_of=None, # we pad in batch afterwards
return_attention_mask=False, # we pad in batch afterwards
return_token_type_ids=return_token_type_ids,
return_special_tokens_mask=return_special_tokens_mask,
return_length=return_length,
return_tensors=None, # We convert the whole batch to tensors at the end
prepend_batch_axis=False,
verbose=verbose,
prev_answer_coordinates=answer_coordinates[index - 1] if index != 0 else None,
prev_answer_text=answer_text[index - 1] if index != 0 else None,
)
for key, value in outputs.items():
if key not in batch_outputs:
batch_outputs[key] = []
batch_outputs[key].append(value)
batch_outputs = self.pad(
batch_outputs,
padding=padding,
max_length=max_length,
pad_to_multiple_of=pad_to_multiple_of,
return_attention_mask=return_attention_mask,
)
batch_outputs = BatchEncoding(batch_outputs, tensor_type=return_tensors)
return batch_outputs
@add_end_docstrings(ENCODE_KWARGS_DOCSTRING)
def encode(
self,
table: "pd.DataFrame",
query: Optional[
Union[
TextInput,
PreTokenizedInput,
EncodedInput,
]
] = None,
add_special_tokens: bool = True,
padding: Union[bool, str, PaddingStrategy] = False,
truncation: Union[bool, str, TapasTruncationStrategy] = False,
max_length: Optional[int] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
**kwargs
) -> List[int]:
"""
Prepare a table and a string for the model. This method does not return token type IDs, attention masks, etc.
which are necessary for the model to work correctly. Use that method if you want to build your processing on
your own, otherwise refer to ``__call__``.
Args:
table (:obj:`pd.DataFrame`):
Table containing tabular data. Note that all cell values must be text. Use `.astype(str)` on a Pandas
dataframe to convert it to string.
query (:obj:`str` or :obj:`List[str]`):
Question related to a table to be encoded.
"""
encoded_inputs = self.encode_plus(
table,
query=query,
add_special_tokens=add_special_tokens,
padding=padding,
truncation=truncation,
max_length=max_length,
return_tensors=return_tensors,
**kwargs,
)
return encoded_inputs["input_ids"]
@add_end_docstrings(ENCODE_KWARGS_DOCSTRING, TAPAS_ENCODE_PLUS_ADDITIONAL_KWARGS_DOCSTRING)
def encode_plus(
self,
table: "pd.DataFrame",
query: Optional[
Union[
TextInput,
PreTokenizedInput,
EncodedInput,
]
] = None,
answer_coordinates: Optional[List[Tuple]] = None,
answer_text: Optional[List[TextInput]] = None,
add_special_tokens: bool = True,
padding: Union[bool, str, PaddingStrategy] = False,
truncation: Union[bool, str, TapasTruncationStrategy] = False,
max_length: Optional[int] = None,
pad_to_multiple_of: Optional[int] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
return_token_type_ids: Optional[bool] = None,
return_attention_mask: Optional[bool] = None,
return_special_tokens_mask: bool = False,
return_offsets_mapping: bool = False,
return_length: bool = False,
verbose: bool = True,
**kwargs
) -> BatchEncoding:
"""
Prepare a table and a string for the model.
Args:
table (:obj:`pd.DataFrame`):
Table containing tabular data. Note that all cell values must be text. Use `.astype(str)` on a Pandas
dataframe to convert it to string.
query (:obj:`str` or :obj:`List[str]`):
Question related to a table to be encoded.
answer_coordinates (:obj:`List[Tuple]` or :obj:`List[List[Tuple]]`, `optional`):
Answer coordinates of each table-question pair in the batch. The answer_coordinates must be a single
list of one or more tuples. Each tuple must be a (row_index, column_index) pair. The first data row
(not the column header row) has index 0. The first column has index 0.
answer_text (:obj:`List[str]` or :obj:`List[List[str]]`, `optional`):
Answer text of each table-question pair in the batch. The answer_text must be a single list of one or
more strings. Each string must be the answer text of a corresponding answer coordinate.
"""
if return_token_type_ids is not None and not add_special_tokens:
raise ValueError(
"Asking to return token_type_ids while setting add_special_tokens to False "
"results in an undefined behavior. Please set add_special_tokens to True or "
"set return_token_type_ids to None."
)
if (answer_coordinates and not answer_text) or (not answer_coordinates and answer_text):
raise ValueError("In case you provide answers, both answer_coordinates and answer_text should be provided")
if "is_split_into_words" in kwargs:
raise NotImplementedError("Currently TapasTokenizer only supports questions as strings.")
if return_offsets_mapping:
raise NotImplementedError(
"return_offset_mapping is not available when using Python tokenizers."
"To use this feature, change your tokenizer to one deriving from "
"transformers.PreTrainedTokenizerFast."
)
return self._encode_plus(
table=table,
query=query,
answer_coordinates=answer_coordinates,
answer_text=answer_text,
add_special_tokens=add_special_tokens,
truncation=truncation,
padding=padding,
max_length=max_length,
pad_to_multiple_of=pad_to_multiple_of,
return_tensors=return_tensors,
return_token_type_ids=return_token_type_ids,
return_attention_mask=return_attention_mask,
return_special_tokens_mask=return_special_tokens_mask,
return_offsets_mapping=return_offsets_mapping,
return_length=return_length,
verbose=verbose,
**kwargs,
)
def _encode_plus(
self,
table: "pd.DataFrame",
query: Union[
TextInput,
PreTokenizedInput,
EncodedInput,
],
answer_coordinates: Optional[List[Tuple]] = None,
answer_text: Optional[List[TextInput]] = None,
add_special_tokens: bool = True,
padding: Union[bool, str, PaddingStrategy] = False,
truncation: Union[bool, str, TapasTruncationStrategy] = False,
max_length: Optional[int] = None,
pad_to_multiple_of: Optional[int] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
return_token_type_ids: Optional[bool] = True,
return_attention_mask: Optional[bool] = True,
return_special_tokens_mask: bool = False,
return_offsets_mapping: bool = False,
return_length: bool = False,
verbose: bool = True,
**kwargs
):
if query is None:
query = ""
logger.warning(
"TAPAS is a question answering model but you have not passed a query. Please be aware that the "
"model will probably not behave correctly."
)
table_tokens = self._tokenize_table(table)
query_tokens = self.tokenize(query)
return self.prepare_for_model(
table,
query,
tokenized_table=table_tokens,
query_tokens=query_tokens,
answer_coordinates=answer_coordinates,
answer_text=answer_text,
add_special_tokens=add_special_tokens,
truncation=truncation,
padding=padding,
max_length=max_length,
pad_to_multiple_of=pad_to_multiple_of,
return_tensors=return_tensors,
prepend_batch_axis=True,
return_attention_mask=return_attention_mask,
return_token_type_ids=return_token_type_ids,
return_special_tokens_mask=return_special_tokens_mask,
return_length=return_length,
verbose=verbose,
)
@add_end_docstrings(ENCODE_KWARGS_DOCSTRING, TAPAS_ENCODE_PLUS_ADDITIONAL_KWARGS_DOCSTRING)
def prepare_for_model(
self,
raw_table: "pd.DataFrame",
raw_query: Union[
TextInput,
PreTokenizedInput,
EncodedInput,
],
tokenized_table: Optional[TokenizedTable] = None,
query_tokens: Optional[TokenizedTable] = None,
answer_coordinates: Optional[List[Tuple]] = None,
answer_text: Optional[List[TextInput]] = None,
add_special_tokens: bool = True,
padding: Union[bool, str, PaddingStrategy] = False,
truncation: Union[bool, str, TapasTruncationStrategy] = False,
max_length: Optional[int] = None,
pad_to_multiple_of: Optional[int] = None,
return_tensors: Optional[Union[str, TensorType]] = None,
return_token_type_ids: Optional[bool] = True,
return_attention_mask: Optional[bool] = True,
return_special_tokens_mask: bool = False,
return_offsets_mapping: bool = False,
return_length: bool = False,
verbose: bool = True,
prepend_batch_axis: bool = False,
**kwargs
) -> BatchEncoding:
"""
Prepares a sequence of input id so that it can be used by the model. It adds special tokens, truncates
sequences if overflowing while taking into account the special tokens.
Args:
raw_table (:obj:`pd.DataFrame`):
The original table before any transformation (like tokenization) was applied to it.
raw_query (:obj:`TextInput` or :obj:`PreTokenizedInput` or :obj:`EncodedInput`):
The original query before any transformation (like tokenization) was applied to it.
tokenized_table (:obj:`TokenizedTable`):
The table after tokenization.
query_tokens (:obj:`List[str]`):
The query after tokenization.
answer_coordinates (:obj:`List[Tuple]` or :obj:`List[List[Tuple]]`, `optional`):
Answer coordinates of each table-question pair in the batch. The answer_coordinates must be a single
list of one or more tuples. Each tuple must be a (row_index, column_index) pair. The first data row
(not the column header row) has index 0. The first column has index 0.
answer_text (:obj:`List[str]` or :obj:`List[List[str]]`, `optional`):
Answer text of each table-question pair in the batch. The answer_text must be a single list of one or
more strings. Each string must be the answer text of a corresponding answer coordinate.
"""
if isinstance(padding, bool):
if padding and (max_length is not None or pad_to_multiple_of is not None):
padding = PaddingStrategy.MAX_LENGTH
else:
padding = PaddingStrategy.DO_NOT_PAD
elif not isinstance(padding, PaddingStrategy):
padding = PaddingStrategy(padding)
if isinstance(truncation, bool):
if truncation:
truncation = TapasTruncationStrategy.DROP_ROWS_TO_FIT
else:
truncation = TapasTruncationStrategy.DO_NOT_TRUNCATE
elif not isinstance(truncation, TapasTruncationStrategy):
truncation = TapasTruncationStrategy(truncation)
encoded_inputs = {}
is_part_of_batch = False
prev_answer_coordinates, prev_answer_text = None, None
if "prev_answer_coordinates" in kwargs and "prev_answer_text" in kwargs:
is_part_of_batch = True
prev_answer_coordinates = kwargs["prev_answer_coordinates"]
prev_answer_text = kwargs["prev_answer_text"]
num_rows = self._get_num_rows(raw_table, truncation != TapasTruncationStrategy.DO_NOT_TRUNCATE)
num_columns = self._get_num_columns(raw_table)
_, _, num_tokens = self._get_table_boundaries(tokenized_table)
if truncation != TapasTruncationStrategy.DO_NOT_TRUNCATE:
num_rows, num_tokens = self._get_truncated_table_rows(
query_tokens, tokenized_table, num_rows, num_columns, max_length, truncation_strategy=truncation
)
table_data = list(self._get_table_values(tokenized_table, num_columns, num_rows, num_tokens))
query_ids = self.convert_tokens_to_ids(query_tokens)
table_ids = list(zip(*table_data))[0] if len(table_data) > 0 else list(zip(*table_data))
table_ids = self.convert_tokens_to_ids(list(table_ids))
if "return_overflowing_tokens" in kwargs and kwargs["return_overflowing_tokens"]:
raise ValueError("TAPAS does not return overflowing tokens as it works on tables.")
if add_special_tokens:
input_ids = self.build_inputs_with_special_tokens(query_ids, table_ids)
else:
input_ids = query_ids + table_ids
if max_length is not None and len(input_ids) > max_length:
raise ValueError(
"Could not encode the query and table header given the maximum length. Encoding the query and table"
f"header results in a length of {len(input_ids)} which is higher than the max_length of {max_length}"
)
encoded_inputs["input_ids"] = input_ids
segment_ids = self.create_segment_token_type_ids_from_sequences(query_ids, table_data)
column_ids = self.create_column_token_type_ids_from_sequences(query_ids, table_data)
row_ids = self.create_row_token_type_ids_from_sequences(query_ids, table_data)
if not is_part_of_batch or (prev_answer_coordinates is None and prev_answer_text is None):
# simply set the prev_labels to zeros
prev_labels = [0] * len(row_ids)
else:
prev_labels = self.get_answer_ids(
column_ids, row_ids, table_data, prev_answer_text, prev_answer_coordinates
)
# FIRST: parse both the table and question in terms of numeric values
raw_table = add_numeric_table_values(raw_table)
raw_query = add_numeric_values_to_question(raw_query)
# SECOND: add numeric-related features (and not parse them in these functions):
column_ranks, inv_column_ranks = self._get_numeric_column_ranks(column_ids, row_ids, raw_table)
numeric_relations = self._get_numeric_relations(raw_query, column_ids, row_ids, raw_table)
# Load from model defaults
if return_token_type_ids is None:
return_token_type_ids = "token_type_ids" in self.model_input_names
if return_attention_mask is None:
return_attention_mask = "attention_mask" in self.model_input_names
if return_attention_mask:
attention_mask = self.create_attention_mask_from_sequences(query_ids, table_data)
encoded_inputs["attention_mask"] = attention_mask
if answer_coordinates is not None and answer_text is not None:
labels = self.get_answer_ids(column_ids, row_ids, table_data, answer_text, answer_coordinates)
numeric_values = self._get_numeric_values(raw_table, column_ids, row_ids)
numeric_values_scale = self._get_numeric_values_scale(raw_table, column_ids, row_ids)
encoded_inputs["labels"] = labels
encoded_inputs["numeric_values"] = numeric_values
encoded_inputs["numeric_values_scale"] = numeric_values_scale
if return_token_type_ids:
token_type_ids = [
segment_ids,
column_ids,
row_ids,
prev_labels,
column_ranks,
inv_column_ranks,
numeric_relations,
]
token_type_ids = [list(ids) for ids in list(zip(*token_type_ids))]
encoded_inputs["token_type_ids"] = token_type_ids
if return_special_tokens_mask:
if add_special_tokens:
encoded_inputs["special_tokens_mask"] = self.get_special_tokens_mask(query_ids, table_ids)
else:
encoded_inputs["special_tokens_mask"] = [0] * len(input_ids)
# Check lengths
if max_length is None and len(encoded_inputs["input_ids"]) > self.model_max_length and verbose:
if not self.deprecation_warnings.get("sequence-length-is-longer-than-the-specified-maximum", False):
logger.warning(
"Token indices sequence length is longer than the specified maximum sequence length "
"for this model ({} > {}). Running this sequence through the model will result in "
"indexing errors".format(len(encoded_inputs["input_ids"]), self.model_max_length)
)
self.deprecation_warnings["sequence-length-is-longer-than-the-specified-maximum"] = True
# Padding
if padding != PaddingStrategy.DO_NOT_PAD or return_attention_mask:
encoded_inputs = self.pad(
encoded_inputs,
max_length=max_length,
padding=padding.value,
pad_to_multiple_of=pad_to_multiple_of,
return_attention_mask=return_attention_mask,
)
if return_length:
encoded_inputs["length"] = len(encoded_inputs["input_ids"])
batch_outputs = BatchEncoding(
encoded_inputs, tensor_type=return_tensors, prepend_batch_axis=prepend_batch_axis
)
return batch_outputs
def _get_truncated_table_rows(
self,
query_tokens: List[str],
tokenized_table: TokenizedTable,
num_rows: int,
num_columns: int,
max_length: int,
truncation_strategy: Union[str, TapasTruncationStrategy],
) -> Tuple[int, int]:
"""
Truncates a sequence pair in-place following the strategy.
Args:
query_tokens (:obj:`List[str]`):
List of strings corresponding to the tokenized query.
tokenized_table (:obj:`TokenizedTable`):
Tokenized table
num_rows (:obj:`int`):
Total number of table rows
num_columns (:obj:`int`):
Total number of table columns
max_length (:obj:`int`):
Total maximum length.
truncation_strategy (:obj:`str` or :obj:`~transformers.TapasTruncationStrategy`):
Truncation strategy to use. Seeing as this method should only be called when truncating, the only
available strategy is the :obj:`"drop_rows_to_fit"` strategy.
Returns:
:obj:`Tuple(int, int)`: tuple containing the number of rows after truncation, and the number of tokens
available for each table element.
"""
if not isinstance(truncation_strategy, TapasTruncationStrategy):
truncation_strategy = TapasTruncationStrategy(truncation_strategy)
if max_length is None:
max_length = self.model_max_length
if truncation_strategy == TapasTruncationStrategy.DROP_ROWS_TO_FIT:
while True:
num_tokens = self._get_max_num_tokens(
query_tokens, tokenized_table, num_rows=num_rows, num_columns=num_columns, max_length=max_length
)
if num_tokens is not None:
# We could fit the table.
break
# Try to drop a row to fit the table.
num_rows -= 1
if num_rows < 1:
break
elif truncation_strategy != TapasTruncationStrategy.DO_NOT_TRUNCATE:
raise ValueError(f"Unknown truncation strategy {truncation_strategy}.")
return num_rows, num_tokens or 1
def _tokenize_table(
self,
table=None,
):
"""
Tokenizes column headers and cell texts of a table.
Args:
table (:obj:`pd.Dataframe`):
Table. Returns: :obj:`TokenizedTable`: TokenizedTable object.
"""
tokenized_rows = []
tokenized_row = []
# tokenize column headers
for column in table:
if self.strip_column_names:
tokenized_row.append(self.tokenize(""))
else:
tokenized_row.append(self.tokenize(column))
tokenized_rows.append(tokenized_row)
# tokenize cell values
for idx, row in table.iterrows():
tokenized_row = []
for cell in row:
tokenized_row.append(self.tokenize(cell))
tokenized_rows.append(tokenized_row)
token_coordinates = []
for row_index, row in enumerate(tokenized_rows):
for column_index, cell in enumerate(row):
for token_index, _ in enumerate(cell):
token_coordinates.append(
TokenCoordinates(
row_index=row_index,
column_index=column_index,
token_index=token_index,
)
)
return TokenizedTable(
rows=tokenized_rows,
selected_tokens=token_coordinates,
)
def _question_encoding_cost(self, question_tokens):
# Two extra spots of SEP and CLS.
return len(question_tokens) + 2
def _get_token_budget(self, question_tokens, max_length=None):
"""
Computes the number of tokens left for the table after tokenizing a question, taking into account the max
sequence length of the model.
Args:
question_tokens (:obj:`List[String]`):
List of question tokens. Returns: :obj:`int`: the number of tokens left for the table, given the model
max length.
"""
return (max_length if max_length is not None else self.model_max_length) - self._question_encoding_cost(
question_tokens
)
def _get_table_values(self, table, num_columns, num_rows, num_tokens) -> Generator[TableValue, None, None]:
"""Iterates over partial table and returns token, column and row indexes."""
for tc in table.selected_tokens:
# First row is header row.
if tc.row_index >= num_rows + 1:
continue
if tc.column_index >= num_columns:
continue
cell = table.rows[tc.row_index][tc.column_index]
token = cell[tc.token_index]
word_begin_index = tc.token_index
# Don't add partial words. Find the starting word piece and check if it
# fits in the token budget.
while word_begin_index >= 0 and _is_inner_wordpiece(cell[word_begin_index]):
word_begin_index -= 1
if word_begin_index >= num_tokens:
continue
yield TableValue(token, tc.column_index + 1, tc.row_index)
def _get_table_boundaries(self, table):
"""Return maximal number of rows, columns and tokens."""
max_num_tokens = 0
max_num_columns = 0
max_num_rows = 0
for tc in table.selected_tokens:
max_num_columns = max(max_num_columns, tc.column_index + 1)
max_num_rows = max(max_num_rows, tc.row_index + 1)
max_num_tokens = max(max_num_tokens, tc.token_index + 1)
max_num_columns = min(self.max_column_id, max_num_columns)
max_num_rows = min(self.max_row_id, max_num_rows)
return max_num_rows, max_num_columns, max_num_tokens
def _get_table_cost(self, table, num_columns, num_rows, num_tokens):
return sum(1 for _ in self._get_table_values(table, num_columns, num_rows, num_tokens))
def _get_max_num_tokens(self, question_tokens, tokenized_table, num_columns, num_rows, max_length):
"""Computes max number of tokens that can be squeezed into the budget."""
token_budget = self._get_token_budget(question_tokens, max_length)
_, _, max_num_tokens = self._get_table_boundaries(tokenized_table)
if self.cell_trim_length >= 0 and max_num_tokens > self.cell_trim_length:
max_num_tokens = self.cell_trim_length
num_tokens = 0
for num_tokens in range(max_num_tokens + 1):
cost = self._get_table_cost(tokenized_table, num_columns, num_rows, num_tokens + 1)
if cost > token_budget:
break
if num_tokens < max_num_tokens:
if self.cell_trim_length >= 0:
# We don't allow dynamic trimming if a cell_trim_length is set.
return None
if num_tokens == 0:
return None
return num_tokens
def _get_num_columns(self, table):
num_columns = table.shape[1]
if num_columns >= self.max_column_id:
raise ValueError("Too many columns")
return num_columns
def _get_num_rows(self, table, drop_rows_to_fit):
num_rows = table.shape[0]
if num_rows >= self.max_row_id:
if drop_rows_to_fit:
num_rows = self.max_row_id - 1
else:
raise ValueError("Too many rows")
return num_rows
def _serialize_text(self, question_tokens):
"""Serializes texts in index arrays."""
tokens = []
segment_ids = []
column_ids = []
row_ids = []
# add [CLS] token at the beginning
tokens.append(self.cls_token)
segment_ids.append(0)
column_ids.append(0)
row_ids.append(0)
for token in question_tokens:
tokens.append(token)
segment_ids.append(0)
column_ids.append(0)
row_ids.append(0)
return tokens, segment_ids, column_ids, row_ids
def _serialize(
self,
question_tokens,
table,
num_columns,
num_rows,
num_tokens,
):
"""Serializes table and text."""
tokens, segment_ids, column_ids, row_ids = self._serialize_text(question_tokens)
# add [SEP] token between question and table tokens
tokens.append(self.sep_token)
segment_ids.append(0)
column_ids.append(0)
row_ids.append(0)
for token, column_id, row_id in self._get_table_values(table, num_columns, num_rows, num_tokens):
tokens.append(token)
segment_ids.append(1)
column_ids.append(column_id)
row_ids.append(row_id)
return SerializedExample(
tokens=tokens,
segment_ids=segment_ids,
column_ids=column_ids,
row_ids=row_ids,
)
def _get_column_values(self, table, col_index):
table_numeric_values = {}
for row_index, row in table.iterrows():
cell = row[col_index]
if cell.numeric_value is not None:
table_numeric_values[row_index] = cell.numeric_value
return table_numeric_values
def _get_cell_token_indexes(self, column_ids, row_ids, column_id, row_id):
for index in range(len(column_ids)):
if column_ids[index] - 1 == column_id and row_ids[index] - 1 == row_id:
yield index
def _get_numeric_column_ranks(self, column_ids, row_ids, table):
"""Returns column ranks for all numeric columns."""
ranks = [0] * len(column_ids)
inv_ranks = [0] * len(column_ids)
# original code from tf_example_utils.py of the original implementation
if table is not None:
for col_index in range(len(table.columns)):
table_numeric_values = self._get_column_values(table, col_index)
if not table_numeric_values:
continue
try:
key_fn = get_numeric_sort_key_fn(table_numeric_values.values())
except ValueError:
continue
table_numeric_values = {row_index: key_fn(value) for row_index, value in table_numeric_values.items()}
table_numeric_values_inv = collections.defaultdict(list)
for row_index, value in table_numeric_values.items():
table_numeric_values_inv[value].append(row_index)
unique_values = sorted(table_numeric_values_inv.keys())
for rank, value in enumerate(unique_values):
for row_index in table_numeric_values_inv[value]:
for index in self._get_cell_token_indexes(column_ids, row_ids, col_index, row_index):
ranks[index] = rank + 1
inv_ranks[index] = len(unique_values) - rank
return ranks, inv_ranks
def _get_numeric_sort_key_fn(self, table_numeric_values, value):
"""
Returns the sort key function for comparing value to table values. The function returned will be a suitable
input for the key param of the sort(). See number_annotation_utils._get_numeric_sort_key_fn for details
Args:
table_numeric_values: Numeric values of a column
value: Numeric value in the question
Returns:
A function key function to compare column and question values.
"""
if not table_numeric_values:
return None
all_values = list(table_numeric_values.values())
all_values.append(value)
try:
return get_numeric_sort_key_fn(all_values)
except ValueError:
return None
def _get_numeric_relations(self, question, column_ids, row_ids, table):
"""
Returns numeric relations embeddings
Args:
question: Question object.
column_ids: Maps word piece position to column id.
row_ids: Maps word piece position to row id.
table: The table containing the numeric cell values.
"""
numeric_relations = [0] * len(column_ids)
# first, we add any numeric value spans to the question:
# Create a dictionary that maps a table cell to the set of all relations
# this cell has with any value in the question.
cell_indices_to_relations = collections.defaultdict(set)
if question is not None and table is not None:
for numeric_value_span in question.numeric_spans:
for value in numeric_value_span.values:
for column_index in range(len(table.columns)):
table_numeric_values = self._get_column_values(table, column_index)
sort_key_fn = self._get_numeric_sort_key_fn(table_numeric_values, value)
if sort_key_fn is None:
continue
for row_index, cell_value in table_numeric_values.items():
relation = get_numeric_relation(value, cell_value, sort_key_fn)
if relation is not None:
cell_indices_to_relations[column_index, row_index].add(relation)
# For each cell add a special feature for all its word pieces.
for (column_index, row_index), relations in cell_indices_to_relations.items():
relation_set_index = 0
for relation in relations:
assert relation.value >= Relation.EQ.value
relation_set_index += 2 ** (relation.value - Relation.EQ.value)
for cell_token_index in self._get_cell_token_indexes(column_ids, row_ids, column_index, row_index):
numeric_relations[cell_token_index] = relation_set_index
return numeric_relations
def _get_numeric_values(self, table, column_ids, row_ids):
"""Returns numeric values for computation of answer loss."""
numeric_values = [float("nan")] * len(column_ids)
if table is not None:
num_rows = table.shape[0]
num_columns = table.shape[1]
for col_index in range(num_columns):
for row_index in range(num_rows):
numeric_value = table.iloc[row_index, col_index].numeric_value
if numeric_value is not None:
if numeric_value.float_value is None:
continue
float_value = numeric_value.float_value
if float_value == float("inf"):
continue
for index in self._get_cell_token_indexes(column_ids, row_ids, col_index, row_index):
numeric_values[index] = float_value
return numeric_values
def _get_numeric_values_scale(self, table, column_ids, row_ids):
"""Returns a scale to each token to down weigh the value of long words."""
numeric_values_scale = [1.0] * len(column_ids)
if table is None:
return numeric_values_scale
num_rows = table.shape[0]
num_columns = table.shape[1]
for col_index in range(num_columns):
for row_index in range(num_rows):
indices = [index for index in self._get_cell_token_indexes(column_ids, row_ids, col_index, row_index)]
num_indices = len(indices)
if num_indices > 1:
for index in indices:
numeric_values_scale[index] = float(num_indices)
return numeric_values_scale
def _pad_to_seq_length(self, inputs):
while len(inputs) > self.model_max_length:
inputs.pop()
while len(inputs) < self.model_max_length:
inputs.append(0)
def _get_all_answer_ids_from_coordinates(
self,
column_ids,
row_ids,
answers_list,
):
"""Maps lists of answer coordinates to token indexes."""
answer_ids = [0] * len(column_ids)
found_answers = set()
all_answers = set()
for answers in answers_list:
column_index, row_index = answers
all_answers.add((column_index, row_index))
for index in self._get_cell_token_indexes(column_ids, row_ids, column_index, row_index):
found_answers.add((column_index, row_index))
answer_ids[index] = 1
missing_count = len(all_answers) - len(found_answers)
return answer_ids, missing_count
def _get_all_answer_ids(self, column_ids, row_ids, answer_coordinates):
"""
Maps answer coordinates of a question to token indexes.
In the SQA format (TSV), the coordinates are given as (row, column) tuples. Here, we first swap them to
(column, row) format before calling _get_all_answer_ids_from_coordinates.
"""
def _to_coordinates(answer_coordinates_question):
return [(coords[1], coords[0]) for coords in answer_coordinates_question]
return self._get_all_answer_ids_from_coordinates(
column_ids, row_ids, answers_list=(_to_coordinates(answer_coordinates))
)
def _find_tokens(self, text, segment):
"""Return start index of segment in text or None."""
logging.info("text: %s %s", text, segment)
for index in range(1 + len(text) - len(segment)):
for seg_index, seg_token in enumerate(segment):
if text[index + seg_index].piece != seg_token.piece:
break
else:
return index
return None
def _find_answer_coordinates_from_answer_text(
self,
tokenized_table,
answer_text,
):
"""Returns all occurrences of answer_text in the table."""
logging.info("answer text: %s", answer_text)
for row_index, row in enumerate(tokenized_table.rows):
if row_index == 0:
# We don't search for answers in the header.
continue
for col_index, cell in enumerate(row):
token_index = self._find_tokens(cell, answer_text)
if token_index is not None:
yield TokenCoordinates(
row_index=row_index,
column_index=col_index,
token_index=token_index,
)
def _find_answer_ids_from_answer_texts(
self,
column_ids,
row_ids,
tokenized_table,
answer_texts,
):
"""Maps question with answer texts to the first matching token indexes."""
answer_ids = [0] * len(column_ids)
for answer_text in answer_texts:
for coordinates in self._find_answer_coordinates_from_answer_text(
tokenized_table,
answer_text,
):
# Maps answer coordinates to indexes this can fail if tokens / rows have
# been pruned.
indexes = list(
self._get_cell_token_indexes(
column_ids,
row_ids,
column_id=coordinates.column_index,
row_id=coordinates.row_index - 1,
)
)
indexes.sort()
coordinate_answer_ids = []
if indexes:
begin_index = coordinates.token_index + indexes[0]
end_index = begin_index + len(answer_text)
for index in indexes:
if index >= begin_index and index < end_index:
coordinate_answer_ids.append(index)
if len(coordinate_answer_ids) == len(answer_text):
for index in coordinate_answer_ids:
answer_ids[index] = 1
break
return answer_ids
def _get_answer_ids(self, column_ids, row_ids, answer_coordinates):
"""Maps answer coordinates of a question to token indexes."""
answer_ids, missing_count = self._get_all_answer_ids(column_ids, row_ids, answer_coordinates)
if missing_count:
raise ValueError("Couldn't find all answers")
return answer_ids
def get_answer_ids(self, column_ids, row_ids, tokenized_table, answer_texts_question, answer_coordinates_question):
if self.update_answer_coordinates:
return self._find_answer_ids_from_answer_texts(
column_ids,
row_ids,
tokenized_table,
answer_texts=[self.tokenize(at) for at in answer_texts_question],
)
return self._get_answer_ids(column_ids, row_ids, answer_coordinates_question)
def _pad(
self,
encoded_inputs: Union[Dict[str, EncodedInput], BatchEncoding],
max_length: Optional[int] = None,
padding_strategy: PaddingStrategy = PaddingStrategy.DO_NOT_PAD,
pad_to_multiple_of: Optional[int] = None,
return_attention_mask: Optional[bool] = None,
) -> dict:
"""
Pad encoded inputs (on left/right and up to predefined length or max length in the batch)
Args:
encoded_inputs: Dictionary of tokenized inputs (`List[int]`) or batch of tokenized inputs (`List[List[int]]`).
max_length: maximum length of the returned list and optionally padding length (see below).
Will truncate by taking into account the special tokens.
padding_strategy: PaddingStrategy to use for padding.
- PaddingStrategy.LONGEST Pad to the longest sequence in the batch
- PaddingStrategy.MAX_LENGTH: Pad to the max length (default)
- PaddingStrategy.DO_NOT_PAD: Do not pad
The tokenizer padding sides are defined in self.padding_side:
- 'left': pads on the left of the sequences
- 'right': pads on the right of the sequences
pad_to_multiple_of: (optional) Integer if set will pad the sequence to a multiple of the provided value.
This is especially useful to enable the use of Tensor Core on NVIDIA hardware with compute capability
>= 7.5 (Volta).
return_attention_mask: (optional) Set to False to avoid returning attention mask (default: set to model specifics)
"""
# Load from model defaults
if return_attention_mask is None:
return_attention_mask = "attention_mask" in self.model_input_names
if padding_strategy == PaddingStrategy.LONGEST:
max_length = len(encoded_inputs["input_ids"])
if max_length is not None and pad_to_multiple_of is not None and (max_length % pad_to_multiple_of != 0):
max_length = ((max_length // pad_to_multiple_of) + 1) * pad_to_multiple_of
needs_to_be_padded = (
padding_strategy != PaddingStrategy.DO_NOT_PAD and len(encoded_inputs["input_ids"]) != max_length
)
if needs_to_be_padded:
difference = max_length - len(encoded_inputs["input_ids"])
if self.padding_side == "right":
if return_attention_mask:
encoded_inputs["attention_mask"] = [1] * len(encoded_inputs["input_ids"]) + [0] * difference
if "token_type_ids" in encoded_inputs:
encoded_inputs["token_type_ids"] = (
encoded_inputs["token_type_ids"] + [[self.pad_token_type_id] * 7] * difference
)
if "labels" in encoded_inputs:
encoded_inputs["labels"] = encoded_inputs["labels"] + [0] * difference
if "numeric_values" in encoded_inputs:
encoded_inputs["numeric_values"] = encoded_inputs["numeric_values"] + [float("nan")] * difference
if "numeric_values_scale" in encoded_inputs:
encoded_inputs["numeric_values_scale"] = (
encoded_inputs["numeric_values_scale"] + [1.0] * difference
)
if "special_tokens_mask" in encoded_inputs:
encoded_inputs["special_tokens_mask"] = encoded_inputs["special_tokens_mask"] + [1] * difference
encoded_inputs["input_ids"] = encoded_inputs["input_ids"] + [self.pad_token_id] * difference
elif self.padding_side == "left":
if return_attention_mask:
encoded_inputs["attention_mask"] = [0] * difference + [1] * len(encoded_inputs["input_ids"])
if "token_type_ids" in encoded_inputs:
encoded_inputs["token_type_ids"] = [[self.pad_token_type_id] * 7] * difference + encoded_inputs[
"token_type_ids"
]
if "labels" in encoded_inputs:
encoded_inputs["labels"] = [0] * difference + encoded_inputs["labels"]
if "numeric_values" in encoded_inputs:
encoded_inputs["numeric_values"] = [float("nan")] * difference + encoded_inputs["numeric_values"]
if "numeric_values_scale" in encoded_inputs:
encoded_inputs["numeric_values_scale"] = [1.0] * difference + encoded_inputs[
"numeric_values_scale"
]
if "special_tokens_mask" in encoded_inputs:
encoded_inputs["special_tokens_mask"] = [1] * difference + encoded_inputs["special_tokens_mask"]
encoded_inputs["input_ids"] = [self.pad_token_id] * difference + encoded_inputs["input_ids"]
else:
raise ValueError("Invalid padding strategy:" + str(self.padding_side))
else:
if return_attention_mask:
encoded_inputs["attention_mask"] = [1] * len(encoded_inputs["input_ids"])
return encoded_inputs
# Everything related to converting logits to predictions
def _get_cell_token_probs(self, probabilities, segment_ids, row_ids, column_ids):
for i, p in enumerate(probabilities):
segment_id = segment_ids[i]
col = column_ids[i] - 1
row = row_ids[i] - 1
if col >= 0 and row >= 0 and segment_id == 1:
yield i, p
def _get_mean_cell_probs(self, probabilities, segment_ids, row_ids, column_ids):
"""Computes average probability per cell, aggregating over tokens."""
coords_to_probs = collections.defaultdict(list)
for i, prob in self._get_cell_token_probs(probabilities, segment_ids, row_ids, column_ids):
col = column_ids[i] - 1
row = row_ids[i] - 1
coords_to_probs[(col, row)].append(prob)
return {coords: np.array(cell_probs).mean() for coords, cell_probs in coords_to_probs.items()}
def convert_logits_to_predictions(self, data, logits, logits_agg=None, cell_classification_threshold=0.5):
"""
Converts logits of :class:`~transformers.TapasForQuestionAnswering` to actual predicted answer coordinates and
optional aggregation indices.
The original implementation, on which this function is based, can be found `here
<https://github.com/google-research/tapas/blob/4908213eb4df7aa988573350278b44c4dbe3f71b/tapas/experiments/prediction_utils.py#L288>`__.
Args:
data (:obj:`dict`):
Dictionary mapping features to actual values. Should be created using
:class:`~transformers.TapasTokenizer`.
logits (:obj:`np.ndarray` of shape ``(batch_size, sequence_length)``):
Tensor containing the logits at the token level.
logits_agg (:obj:`np.ndarray` of shape ``(batch_size, num_aggregation_labels)``, `optional`):
Tensor containing the aggregation logits.
cell_classification_threshold (:obj:`float`, `optional`, defaults to 0.5):
Threshold to be used for cell selection. All table cells for which their probability is larger than
this threshold will be selected.
Returns:
:obj:`tuple` comprising various elements depending on the inputs:
- predicted_answer_coordinates (``List[List[[tuple]]`` of length ``batch_size``): Predicted answer
coordinates as a list of lists of tuples. Each element in the list contains the predicted answer
coordinates of a single example in the batch, as a list of tuples. Each tuple is a cell, i.e. (row index,
column index).
- predicted_aggregation_indices (``List[int]``of length ``batch_size``, `optional`, returned when
``logits_aggregation`` is provided): Predicted aggregation operator indices of the aggregation head.
"""
# input data is of type float32
# np.log(np.finfo(np.float32).max) = 88.72284
# Any value over 88.72284 will overflow when passed through the exponential, sending a warning
# We disable this warning by truncating the logits.
logits[logits < -88.7] = -88.7
# Compute probabilities from token logits
probabilities = 1 / (1 + np.exp(-logits)) * data["attention_mask"]
token_types = [
"segment_ids",
"column_ids",
"row_ids",
"prev_labels",
"column_ranks",
"inv_column_ranks",
"numeric_relations",
]
# collect input_ids, segment ids, row ids and column ids of batch. Shape (batch_size, seq_len)
input_ids = data["input_ids"]
segment_ids = data["token_type_ids"][:, :, token_types.index("segment_ids")]
row_ids = data["token_type_ids"][:, :, token_types.index("row_ids")]
column_ids = data["token_type_ids"][:, :, token_types.index("column_ids")]
# next, get answer coordinates for every example in the batch
num_batch = input_ids.shape[0]
predicted_answer_coordinates = []
for i in range(num_batch):
probabilities_example = probabilities[i].tolist()
segment_ids_example = segment_ids[i]
row_ids_example = row_ids[i]
column_ids_example = column_ids[i]
max_width = column_ids_example.max()
max_height = row_ids_example.max()
if max_width == 0 and max_height == 0:
continue
cell_coords_to_prob = self._get_mean_cell_probs(
probabilities_example,
segment_ids_example.tolist(),
row_ids_example.tolist(),
column_ids_example.tolist(),
)
# Select the answers above the classification threshold.
answer_coordinates = []
for col in range(max_width):
for row in range(max_height):
cell_prob = cell_coords_to_prob.get((col, row), None)
if cell_prob is not None:
if cell_prob > cell_classification_threshold:
answer_coordinates.append((row, col))
answer_coordinates = sorted(answer_coordinates)
predicted_answer_coordinates.append(answer_coordinates)
output = (predicted_answer_coordinates,)
if logits_agg is not None:
predicted_aggregation_indices = logits_agg.argmax(dim=-1)
output = (predicted_answer_coordinates, predicted_aggregation_indices.tolist())
return output
# End of everything related to converting logits to predictions
# Copied from transformers.models.bert.tokenization_bert.BasicTokenizer
class BasicTokenizer(object):
"""
Constructs a BasicTokenizer that will run basic tokenization (punctuation splitting, lower casing, etc.).
Args:
do_lower_case (:obj:`bool`, `optional`, defaults to :obj:`True`):
Whether or not to lowercase the input when tokenizing.
never_split (:obj:`Iterable`, `optional`):
Collection of tokens which will never be split during tokenization. Only has an effect when
:obj:`do_basic_tokenize=True`
tokenize_chinese_chars (:obj:`bool`, `optional`, defaults to :obj:`True`):
Whether or not to tokenize Chinese characters.
This should likely be deactivated for Japanese (see this `issue
<https://github.com/huggingface/transformers/issues/328>`__).
strip_accents: (:obj:`bool`, `optional`):
Whether or not to strip all accents. If this option is not specified, then it will be determined by the
value for :obj:`lowercase` (as in the original BERT).
"""
def __init__(self, do_lower_case=True, never_split=None, tokenize_chinese_chars=True, strip_accents=None):
if never_split is None:
never_split = []
self.do_lower_case = do_lower_case
self.never_split = set(never_split)
self.tokenize_chinese_chars = tokenize_chinese_chars
self.strip_accents = strip_accents
def tokenize(self, text, never_split=None):
"""
Basic Tokenization of a piece of text. Split on "white spaces" only, for sub-word tokenization, see
WordPieceTokenizer.
Args:
**never_split**: (`optional`) list of str
Kept for backward compatibility purposes. Now implemented directly at the base class level (see
:func:`PreTrainedTokenizer.tokenize`) List of token not to split.
"""
# union() returns a new set by concatenating the two sets.
never_split = self.never_split.union(set(never_split)) if never_split else self.never_split
text = self._clean_text(text)
# This was added on November 1st, 2018 for the multilingual and Chinese
# models. This is also applied to the English models now, but it doesn't
# matter since the English models were not trained on any Chinese data
# and generally don't have any Chinese data in them (there are Chinese
# characters in the vocabulary because Wikipedia does have some Chinese
# words in the English Wikipedia.).
if self.tokenize_chinese_chars:
text = self._tokenize_chinese_chars(text)
orig_tokens = whitespace_tokenize(text)
split_tokens = []
for token in orig_tokens:
if token not in never_split:
if self.do_lower_case:
token = token.lower()
if self.strip_accents is not False:
token = self._run_strip_accents(token)
elif self.strip_accents:
token = self._run_strip_accents(token)
split_tokens.extend(self._run_split_on_punc(token, never_split))
output_tokens = whitespace_tokenize(" ".join(split_tokens))
return output_tokens
def _run_strip_accents(self, text):
"""Strips accents from a piece of text."""
text = unicodedata.normalize("NFD", text)
output = []
for char in text:
cat = unicodedata.category(char)
if cat == "Mn":
continue
output.append(char)
return "".join(output)
def _run_split_on_punc(self, text, never_split=None):
"""Splits punctuation on a piece of text."""
if never_split is not None and text in never_split:
return [text]
chars = list(text)
i = 0
start_new_word = True
output = []
while i < len(chars):
char = chars[i]
if _is_punctuation(char):
output.append([char])
start_new_word = True
else:
if start_new_word:
output.append([])
start_new_word = False
output[-1].append(char)
i += 1
return ["".join(x) for x in output]
def _tokenize_chinese_chars(self, text):
"""Adds whitespace around any CJK character."""
output = []
for char in text:
cp = ord(char)
if self._is_chinese_char(cp):
output.append(" ")
output.append(char)
output.append(" ")
else:
output.append(char)
return "".join(output)
def _is_chinese_char(self, cp):
"""Checks whether CP is the codepoint of a CJK character."""
# This defines a "chinese character" as anything in the CJK Unicode block:
# https://en.wikipedia.org/wiki/CJK_Unified_Ideographs_(Unicode_block)
#
# Note that the CJK Unicode block is NOT all Japanese and Korean characters,
# despite its name. The modern Korean Hangul alphabet is a different block,
# as is Japanese Hiragana and Katakana. Those alphabets are used to write
# space-separated words, so they are not treated specially and handled
# like the all of the other languages.
if (
(cp >= 0x4E00 and cp <= 0x9FFF)
or (cp >= 0x3400 and cp <= 0x4DBF) #
or (cp >= 0x20000 and cp <= 0x2A6DF) #
or (cp >= 0x2A700 and cp <= 0x2B73F) #
or (cp >= 0x2B740 and cp <= 0x2B81F) #
or (cp >= 0x2B820 and cp <= 0x2CEAF) #
or (cp >= 0xF900 and cp <= 0xFAFF)
or (cp >= 0x2F800 and cp <= 0x2FA1F) #
): #
return True
return False
def _clean_text(self, text):
"""Performs invalid character removal and whitespace cleanup on text."""
output = []
for char in text:
cp = ord(char)
if cp == 0 or cp == 0xFFFD or _is_control(char):
continue
if _is_whitespace(char):
output.append(" ")
else:
output.append(char)
return "".join(output)
# Copied from transformers.models.bert.tokenization_bert.WordpieceTokenizer
class WordpieceTokenizer(object):
"""Runs WordPiece tokenization."""
def __init__(self, vocab, unk_token, max_input_chars_per_word=100):
self.vocab = vocab
self.unk_token = unk_token
self.max_input_chars_per_word = max_input_chars_per_word
def tokenize(self, text):
"""
Tokenizes a piece of text into its word pieces. This uses a greedy longest-match-first algorithm to perform
tokenization using the given vocabulary.
For example, :obj:`input = "unaffable"` wil return as output :obj:`["un", "##aff", "##able"]`.
Args:
text: A single token or whitespace separated tokens. This should have
already been passed through `BasicTokenizer`.
Returns:
A list of wordpiece tokens.
"""
output_tokens = []
for token in whitespace_tokenize(text):
chars = list(token)
if len(chars) > self.max_input_chars_per_word:
output_tokens.append(self.unk_token)
continue
is_bad = False
start = 0
sub_tokens = []
while start < len(chars):
end = len(chars)
cur_substr = None
while start < end:
substr = "".join(chars[start:end])
if start > 0:
substr = "##" + substr
if substr in self.vocab:
cur_substr = substr
break
end -= 1
if cur_substr is None:
is_bad = True
break
sub_tokens.append(cur_substr)
start = end
if is_bad:
output_tokens.append(self.unk_token)
else:
output_tokens.extend(sub_tokens)
return output_tokens
# Below: utilities for TAPAS tokenizer (independent from PyTorch/Tensorflow).
# This includes functions to parse numeric values (dates and numbers) from both the table and questions in order
# to create the column_ranks, inv_column_ranks, numeric_values, numeric values_scale and numeric_relations in
# prepare_for_model of TapasTokenizer.
# These are meant to be used in an academic setup, for production use cases Gold mine or Aqua should be used.
# taken from constants.py of the original implementation
# URL: https://github.com/google-research/tapas/blob/master/tapas/utils/constants.py
class Relation(enum.Enum):
HEADER_TO_CELL = 1 # Connects header to cell.
CELL_TO_HEADER = 2 # Connects cell to header.
QUERY_TO_HEADER = 3 # Connects query to headers.
QUERY_TO_CELL = 4 # Connects query to cells.
ROW_TO_CELL = 5 # Connects row to cells.
CELL_TO_ROW = 6 # Connects cells to row.
EQ = 7 # Annotation value is same as cell value
LT = 8 # Annotation value is less than cell value
GT = 9 # Annotation value is greater than cell value
@dataclass
class Date:
year: Optional[int] = None
month: Optional[int] = None
day: Optional[int] = None
@dataclass
class NumericValue:
float_value: Optional[float] = None
date: Optional[Date] = None
@dataclass
class NumericValueSpan:
begin_index: int = None
end_index: int = None
values: List[NumericValue] = None
@dataclass
class Cell:
text: Text
numeric_value: Optional[NumericValue] = None
@dataclass
class Question:
original_text: Text # The original raw question string.
text: Text # The question string after normalization.
numeric_spans: Optional[List[NumericValueSpan]] = None
# Below: all functions from number_utils.py as well as 2 functions (namely get_all_spans and normalize_for_match)
# from text_utils.py of the original implementation. URL's:
# - https://github.com/google-research/tapas/blob/master/tapas/utils/number_utils.py
# - https://github.com/google-research/tapas/blob/master/tapas/utils/text_utils.py
# Constants for parsing date expressions.
# Masks that specify (by a bool) which of (year, month, day) will be populated.
_DateMask = collections.namedtuple("_DateMask", ["year", "month", "day"])
_YEAR = _DateMask(True, False, False)
_YEAR_MONTH = _DateMask(True, True, False)
_YEAR_MONTH_DAY = _DateMask(True, True, True)
_MONTH = _DateMask(False, True, False)
_MONTH_DAY = _DateMask(False, True, True)
# Pairs of patterns to pass to 'datetime.strptime' and masks specifying which
# fields will be set by the corresponding pattern.
_DATE_PATTERNS = (
("%B", _MONTH),
("%Y", _YEAR),
("%Ys", _YEAR),
("%b %Y", _YEAR_MONTH),
("%B %Y", _YEAR_MONTH),
("%B %d", _MONTH_DAY),
("%b %d", _MONTH_DAY),
("%d %b", _MONTH_DAY),
("%d %B", _MONTH_DAY),
("%B %d, %Y", _YEAR_MONTH_DAY),
("%d %B %Y", _YEAR_MONTH_DAY),
("%m-%d-%Y", _YEAR_MONTH_DAY),
("%Y-%m-%d", _YEAR_MONTH_DAY),
("%Y-%m", _YEAR_MONTH),
("%B %Y", _YEAR_MONTH),
("%d %b %Y", _YEAR_MONTH_DAY),
("%Y-%m-%d", _YEAR_MONTH_DAY),
("%b %d, %Y", _YEAR_MONTH_DAY),
("%d.%m.%Y", _YEAR_MONTH_DAY),
("%A, %b %d", _MONTH_DAY),
("%A, %B %d", _MONTH_DAY),
)
# This mapping is used to convert date patterns to regex patterns.
_FIELD_TO_REGEX = (
("%A", r"\w+"), # Weekday as locale’s full name.
("%B", r"\w+"), # Month as locale’s full name.
("%Y", r"\d{4}"), # Year with century as a decimal number.
("%b", r"\w{3}"), # Month as locale’s abbreviated name.
("%d", r"\d{1,2}"), # Day of the month as a zero-padded decimal number.
("%m", r"\d{1,2}"), # Month as a zero-padded decimal number.
)
def _process_date_pattern(dp):
"""Compute a regex for each date pattern to use as a prefilter."""
pattern, mask = dp
regex = pattern
regex = regex.replace(".", re.escape("."))
regex = regex.replace("-", re.escape("-"))
regex = regex.replace(" ", r"\s+")
for field, field_regex in _FIELD_TO_REGEX:
regex = regex.replace(field, field_regex)
# Make sure we didn't miss any of the fields.
assert "%" not in regex, regex
return pattern, mask, re.compile("^" + regex + "$")
def _process_date_patterns():
return tuple(_process_date_pattern(dp) for dp in _DATE_PATTERNS)
_PROCESSED_DATE_PATTERNS = _process_date_patterns()
_MAX_DATE_NGRAM_SIZE = 5
# Following DynSp:
# https://github.com/Microsoft/DynSP/blob/master/util.py#L414.
_NUMBER_WORDS = [
"zero",
"one",
"two",
"three",
"four",
"five",
"six",
"seven",
"eight",
"nine",
"ten",
"eleven",
"twelve",
]
_ORDINAL_WORDS = [
"zeroth",
"first",
"second",
"third",
"fourth",
"fith",
"sixth",
"seventh",
"eighth",
"ninth",
"tenth",
"eleventh",
"twelfth",
]
_ORDINAL_SUFFIXES = ["st", "nd", "rd", "th"]
_NUMBER_PATTERN = re.compile(r"((^|\s)[+-])?((\.\d+)|(\d+(,\d\d\d)*(\.\d*)?))")
# Following DynSp:
# https://github.com/Microsoft/DynSP/blob/master/util.py#L293.
_MIN_YEAR = 1700
_MAX_YEAR = 2016
_INF = float("INF")
def _get_numeric_value_from_date(date, mask):
"""Converts date (datetime Python object) to a NumericValue object with a Date object value."""
if date.year < _MIN_YEAR or date.year > _MAX_YEAR:
raise ValueError("Invalid year: %d" % date.year)
new_date = Date()
if mask.year:
new_date.year = date.year
if mask.month:
new_date.month = date.month
if mask.day:
new_date.day = date.day
return NumericValue(date=new_date)
def _get_span_length_key(span):
"""Sorts span by decreasing length first and incresing first index second."""
return span[1] - span[0], -span[0]
def _get_numeric_value_from_float(value):
"""Converts float (Python) to a NumericValue object with a float value."""
return NumericValue(float_value=value)
# Doesn't parse ordinal expressions such as '18th of february 1655'.
def _parse_date(text):
"""Attempts to format a text as a standard date string (yyyy-mm-dd)."""
text = re.sub(r"Sept\b", "Sep", text)
for in_pattern, mask, regex in _PROCESSED_DATE_PATTERNS:
if not regex.match(text):
continue
try:
date = datetime.datetime.strptime(text, in_pattern).date()
except ValueError:
continue
try:
return _get_numeric_value_from_date(date, mask)
except ValueError:
continue
return None
def _parse_number(text):
"""Parses simple cardinal and ordinals numbers."""
for suffix in _ORDINAL_SUFFIXES:
if text.endswith(suffix):
text = text[: -len(suffix)]
break
text = text.replace(",", "")
try:
value = float(text)
except ValueError:
return None
if math.isnan(value):
return None
if value == _INF:
return None
return value
def get_all_spans(text, max_ngram_length):
"""
Split a text into all possible ngrams up to 'max_ngram_length'. Split points are white space and punctuation.
Args:
text: Text to split.
max_ngram_length: maximal ngram length.
Yields:
Spans, tuples of begin-end index.
"""
start_indexes = []
for index, char in enumerate(text):
if not char.isalnum():
continue
if index == 0 or not text[index - 1].isalnum():
start_indexes.append(index)
if index + 1 == len(text) or not text[index + 1].isalnum():
for start_index in start_indexes[-max_ngram_length:]:
yield start_index, index + 1
def normalize_for_match(text):
return " ".join(text.lower().split())
def format_text(text):
"""Lowercases and strips punctuation."""
text = text.lower().strip()
if text == "n/a" or text == "?" or text == "nan":
text = EMPTY_TEXT
text = re.sub(r"[^\w\d]+", " ", text).replace("_", " ")
text = " ".join(text.split())
text = text.strip()
if text:
return text
return EMPTY_TEXT
def parse_text(text):
"""
Extracts longest number and date spans.
Args:
text: text to annotate
Returns:
List of longest numeric value spans.
"""
span_dict = collections.defaultdict(list)
for match in _NUMBER_PATTERN.finditer(text):
span_text = text[match.start() : match.end()]
number = _parse_number(span_text)
if number is not None:
span_dict[match.span()].append(_get_numeric_value_from_float(number))
for begin_index, end_index in get_all_spans(text, max_ngram_length=1):
if (begin_index, end_index) in span_dict:
continue
span_text = text[begin_index:end_index]
number = _parse_number(span_text)
if number is not None:
span_dict[begin_index, end_index].append(_get_numeric_value_from_float(number))
for number, word in enumerate(_NUMBER_WORDS):
if span_text == word:
span_dict[begin_index, end_index].append(_get_numeric_value_from_float(float(number)))
break
for number, word in enumerate(_ORDINAL_WORDS):
if span_text == word:
span_dict[begin_index, end_index].append(_get_numeric_value_from_float(float(number)))
break
for begin_index, end_index in get_all_spans(text, max_ngram_length=_MAX_DATE_NGRAM_SIZE):
span_text = text[begin_index:end_index]
date = _parse_date(span_text)
if date is not None:
span_dict[begin_index, end_index].append(date)
spans = sorted(span_dict.items(), key=lambda span_value: _get_span_length_key(span_value[0]), reverse=True)
selected_spans = []
for span, value in spans:
for selected_span, _ in selected_spans:
if selected_span[0] <= span[0] and span[1] <= selected_span[1]:
break
else:
selected_spans.append((span, value))
selected_spans.sort(key=lambda span_value: span_value[0][0])
numeric_value_spans = []
for span, values in selected_spans:
numeric_value_spans.append(NumericValueSpan(begin_index=span[0], end_index=span[1], values=values))
return numeric_value_spans
# Below: all functions from number_annotation_utils.py and 2 functions (namely filter_invalid_unicode
# and filter_invalid_unicode_from_table) from text_utils.py of the original implementation. URL's:
# - https://github.com/google-research/tapas/blob/master/tapas/utils/number_annotation_utils.py
# - https://github.com/google-research/tapas/blob/master/tapas/utils/text_utils.py
_PrimitiveNumericValue = Union[float, Tuple[Optional[float], Optional[float], Optional[float]]]
_SortKeyFn = Callable[[NumericValue], Tuple[float, Ellipsis]]
_DATE_TUPLE_SIZE = 3
EMPTY_TEXT = "EMPTY"
NUMBER_TYPE = "number"
DATE_TYPE = "date"
def _get_value_type(numeric_value):
if numeric_value.float_value is not None:
return NUMBER_TYPE
elif numeric_value.date is not None:
return DATE_TYPE
raise ValueError("Unknown type: %s" % numeric_value)
def _get_value_as_primitive_value(numeric_value):
"""Maps a NumericValue proto to a float or tuple of float."""
if numeric_value.float_value is not None:
return numeric_value.float_value
if numeric_value.date is not None:
date = numeric_value.date
value_tuple = [None, None, None]
# All dates fields are cased to float to produce a simple primitive value.
if date.year is not None:
value_tuple[0] = float(date.year)
if date.month is not None:
value_tuple[1] = float(date.month)
if date.day is not None:
value_tuple[2] = float(date.day)
return tuple(value_tuple)
raise ValueError("Unknown type: %s" % numeric_value)
def _get_all_types(numeric_values):
return {_get_value_type(value) for value in numeric_values}
def get_numeric_sort_key_fn(numeric_values):
"""
Creates a function that can be used as a sort key or to compare the values. Maps to primitive types and finds the
biggest common subset. Consider the values "05/05/2010" and "August 2007". With the corresponding primitive values
(2010.,5.,5.) and (2007.,8., None). These values can be compared by year and date so we map to the sequence (2010.,
5.), (2007., 8.). If we added a third value "2006" with primitive value (2006., None, None), we could only compare
by the year so we would map to (2010.,), (2007.,) and (2006.,).
Args:
numeric_values: Values to compare
Returns:
A function that can be used as a sort key function (mapping numeric values to a comparable tuple)
Raises:
ValueError if values don't have a common type or are not comparable.
"""
value_types = _get_all_types(numeric_values)
if len(value_types) != 1:
raise ValueError("No common value type in %s" % numeric_values)
value_type = next(iter(value_types))
if value_type == NUMBER_TYPE:
# Primitive values are simple floats, nothing to do here.
return _get_value_as_primitive_value
# The type can only be Date at this point which means the primitive type
# is a float triple.
valid_indexes = set(range(_DATE_TUPLE_SIZE))
for numeric_value in numeric_values:
value = _get_value_as_primitive_value(numeric_value)
assert isinstance(value, tuple)
for tuple_index, inner_value in enumerate(value):
if inner_value is None:
valid_indexes.discard(tuple_index)
if not valid_indexes:
raise ValueError("No common value in %s" % numeric_values)
def _sort_key_fn(numeric_value):
value = _get_value_as_primitive_value(numeric_value)
return tuple(value[index] for index in valid_indexes)
return _sort_key_fn
def _consolidate_numeric_values(row_index_to_values, min_consolidation_fraction, debug_info):
"""
Finds the most common numeric values in a column and returns them
Args:
row_index_to_values:
For each row index all the values in that cell.
min_consolidation_fraction:
Fraction of cells that need to have consolidated value.
debug_info:
Additional information only used for logging
Returns:
For each row index the first value that matches the most common value. Rows that don't have a matching value
are dropped. Empty list if values can't be consolidated.
"""
type_counts = collections.Counter()
for numeric_values in row_index_to_values.values():
type_counts.update(_get_all_types(numeric_values))
if not type_counts:
return {}
max_count = max(type_counts.values())
if max_count < len(row_index_to_values) * min_consolidation_fraction:
# logging.log_every_n(logging.INFO, 'Can\'t consolidate types: %s %s %d', 100,
# debug_info, row_index_to_values, max_count)
return {}
valid_types = set()
for value_type, count in type_counts.items():
if count == max_count:
valid_types.add(value_type)
if len(valid_types) > 1:
assert DATE_TYPE in valid_types
max_type = DATE_TYPE
else:
max_type = next(iter(valid_types))
new_row_index_to_value = {}
for index, values in row_index_to_values.items():
# Extract the first matching value.
for value in values:
if _get_value_type(value) == max_type:
new_row_index_to_value[index] = value
break
return new_row_index_to_value
def _get_numeric_values(text):
"""Parses text and returns numeric values."""
numeric_spans = parse_text(text)
return itertools.chain(*(span.values for span in numeric_spans))
def _get_column_values(table, col_index):
"""
Parses text in column and returns a dict mapping row_index to values. This is the _get_column_values function from
number_annotation_utils.py of the original implementation
Args:
table: Pandas dataframe
col_index: integer, indicating the index of the column to get the numeric values of
"""
index_to_values = {}
for row_index, row in table.iterrows():
text = normalize_for_match(row[col_index].text)
index_to_values[row_index] = list(_get_numeric_values(text))
return index_to_values
def get_numeric_relation(value, other_value, sort_key_fn):
"""Compares two values and returns their relation or None."""
value = sort_key_fn(value)
other_value = sort_key_fn(other_value)
if value == other_value:
return Relation.EQ
if value < other_value:
return Relation.LT
if value > other_value:
return Relation.GT
return None
def add_numeric_values_to_question(question):
"""Adds numeric value spans to a question."""
original_text = question
question = normalize_for_match(question)
numeric_spans = parse_text(question)
return Question(original_text=original_text, text=question, numeric_spans=numeric_spans)
def filter_invalid_unicode(text):
"""Return an empty string and True if 'text' is in invalid unicode."""
return ("", True) if isinstance(text, bytes) else (text, False)
def filter_invalid_unicode_from_table(table):
"""
Removes invalid unicode from table. Checks whether a table cell text contains an invalid unicode encoding. If yes,
reset the table cell text to an empty str and log a warning for each invalid cell
Args:
table: table to clean.
"""
# to do: add table id support
if not hasattr(table, "table_id"):
table.table_id = 0
for row_index, row in table.iterrows():
for col_index, cell in enumerate(row):
cell, is_invalid = filter_invalid_unicode(cell)
if is_invalid:
logging.warning(
"Scrub an invalid table body @ table_id: %s, row_index: %d, " "col_index: %d",
table.table_id,
row_index,
col_index,
)
for col_index, column in enumerate(table.columns):
column, is_invalid = filter_invalid_unicode(column)
if is_invalid:
logging.warning("Scrub an invalid table header @ table_id: %s, col_index: %d", table.table_id, col_index)
def add_numeric_table_values(table, min_consolidation_fraction=0.7, debug_info=None):
"""
Parses text in table column-wise and adds the consolidated values. Consolidation refers to finding values with a
common types (date or number)
Args:
table:
Table to annotate.
min_consolidation_fraction:
Fraction of cells in a column that need to have consolidated value.
debug_info:
Additional information used for logging.
"""
table = table.copy()
# First, filter table on invalid unicode
filter_invalid_unicode_from_table(table)
# Second, replace cell values by Cell objects
for row_index, row in table.iterrows():
for col_index, cell in enumerate(row):
table.iloc[row_index, col_index] = Cell(text=cell)
# Third, add numeric_value attributes to these Cell objects
for col_index, column in enumerate(table.columns):
column_values = _consolidate_numeric_values(
_get_column_values(table, col_index),
min_consolidation_fraction=min_consolidation_fraction,
debug_info=(debug_info, column),
)
for row_index, numeric_value in column_values.items():
table.iloc[row_index, col_index].numeric_value = numeric_value
return table
|
AdaMix/src/transformers/models/tapas/tokenization_tapas.py/0
|
{
"file_path": "AdaMix/src/transformers/models/tapas/tokenization_tapas.py",
"repo_id": "AdaMix",
"token_count": 53002
}
| 64 |
# coding=utf-8
# Copyright 2019-present, Facebook, Inc and the HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
"""
TF 2.0 XLM model.
"""
import itertools
import warnings
from dataclasses import dataclass
from typing import Dict, Optional, Tuple
import numpy as np
import tensorflow as tf
from ...activations_tf import get_tf_activation
from ...file_utils import (
MULTIPLE_CHOICE_DUMMY_INPUTS,
ModelOutput,
add_code_sample_docstrings,
add_start_docstrings,
add_start_docstrings_to_model_forward,
)
from ...modeling_tf_outputs import (
TFBaseModelOutput,
TFMultipleChoiceModelOutput,
TFQuestionAnsweringModelOutput,
TFSequenceClassifierOutput,
TFTokenClassifierOutput,
)
from ...modeling_tf_utils import (
TFMultipleChoiceLoss,
TFPreTrainedModel,
TFQuestionAnsweringLoss,
TFSequenceClassificationLoss,
TFSequenceSummary,
TFSharedEmbeddings,
TFTokenClassificationLoss,
get_initializer,
input_processing,
keras_serializable,
shape_list,
)
from ...utils import logging
from .configuration_xlm import XLMConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "xlm-mlm-en-2048"
_CONFIG_FOR_DOC = "XLMConfig"
_TOKENIZER_FOR_DOC = "XLMTokenizer"
TF_XLM_PRETRAINED_MODEL_ARCHIVE_LIST = [
"xlm-mlm-en-2048",
"xlm-mlm-ende-1024",
"xlm-mlm-enfr-1024",
"xlm-mlm-enro-1024",
"xlm-mlm-tlm-xnli15-1024",
"xlm-mlm-xnli15-1024",
"xlm-clm-enfr-1024",
"xlm-clm-ende-1024",
"xlm-mlm-17-1280",
"xlm-mlm-100-1280",
# See all XLM models at https://huggingface.co/models?filter=xlm
]
def create_sinusoidal_embeddings(n_pos, dim, out):
position_enc = np.array([[pos / np.power(10000, 2 * (j // 2) / dim) for j in range(dim)] for pos in range(n_pos)])
out[:, 0::2] = tf.constant(np.sin(position_enc[:, 0::2]))
out[:, 1::2] = tf.constant(np.cos(position_enc[:, 1::2]))
def get_masks(slen, lengths, causal, padding_mask=None):
"""
Generate hidden states mask, and optionally an attention mask.
"""
bs = shape_list(lengths)[0]
if padding_mask is not None:
mask = padding_mask
else:
# assert lengths.max().item() <= slen
alen = tf.range(slen)
mask = tf.math.less(alen, tf.expand_dims(lengths, axis=1))
# attention mask is the same as mask, or triangular inferior attention (causal)
if causal:
attn_mask = tf.less_equal(
tf.tile(tf.reshape(alen, (1, 1, slen)), (bs, slen, 1)), tf.reshape(alen, (1, slen, 1))
)
else:
attn_mask = mask
# sanity check
# assert shape_list(mask) == [bs, slen]
if tf.executing_eagerly():
tf.debugging.assert_equal(shape_list(mask), [bs, slen])
assert causal is False or shape_list(attn_mask) == [bs, slen, slen]
return mask, attn_mask
class TFXLMMultiHeadAttention(tf.keras.layers.Layer):
NEW_ID = itertools.count()
def __init__(self, n_heads, dim, config, **kwargs):
super().__init__(**kwargs)
self.layer_id = next(TFXLMMultiHeadAttention.NEW_ID)
self.dim = dim
self.n_heads = n_heads
self.output_attentions = config.output_attentions
assert self.dim % self.n_heads == 0
self.q_lin = tf.keras.layers.Dense(dim, kernel_initializer=get_initializer(config.init_std), name="q_lin")
self.k_lin = tf.keras.layers.Dense(dim, kernel_initializer=get_initializer(config.init_std), name="k_lin")
self.v_lin = tf.keras.layers.Dense(dim, kernel_initializer=get_initializer(config.init_std), name="v_lin")
self.out_lin = tf.keras.layers.Dense(dim, kernel_initializer=get_initializer(config.init_std), name="out_lin")
self.dropout = tf.keras.layers.Dropout(config.attention_dropout)
self.pruned_heads = set()
def prune_heads(self, heads):
raise NotImplementedError
def call(self, input, mask, kv, cache, head_mask, output_attentions, training=False):
"""
Self-attention (if kv is None) or attention over source sentence (provided by kv).
"""
# Input is (bs, qlen, dim)
# Mask is (bs, klen) (non-causal) or (bs, klen, klen)
bs, qlen, dim = shape_list(input)
if kv is None:
klen = qlen if cache is None else cache["slen"] + qlen
else:
klen = shape_list(kv)[1]
# assert dim == self.dim, 'Dimensions do not match: %s input vs %s configured' % (dim, self.dim)
dim_per_head = self.dim // self.n_heads
mask_reshape = (bs, 1, qlen, klen) if len(shape_list(mask)) == 3 else (bs, 1, 1, klen)
def shape(x):
""" projection """
return tf.transpose(tf.reshape(x, (bs, -1, self.n_heads, dim_per_head)), perm=(0, 2, 1, 3))
def unshape(x):
""" compute context """
return tf.reshape(tf.transpose(x, perm=(0, 2, 1, 3)), (bs, -1, self.n_heads * dim_per_head))
q = shape(self.q_lin(input)) # (bs, n_heads, qlen, dim_per_head)
if kv is None:
k = shape(self.k_lin(input)) # (bs, n_heads, qlen, dim_per_head)
v = shape(self.v_lin(input)) # (bs, n_heads, qlen, dim_per_head)
elif cache is None or self.layer_id not in cache:
k = v = kv
k = shape(self.k_lin(k)) # (bs, n_heads, qlen, dim_per_head)
v = shape(self.v_lin(v)) # (bs, n_heads, qlen, dim_per_head)
if cache is not None:
if self.layer_id in cache:
if kv is None:
k_, v_ = cache[self.layer_id]
k = tf.concat([k_, k], axis=2) # (bs, n_heads, klen, dim_per_head)
v = tf.concat([v_, v], axis=2) # (bs, n_heads, klen, dim_per_head)
else:
k, v = cache[self.layer_id]
cache[self.layer_id] = (k, v)
f_dim_per_head = tf.cast(dim_per_head, dtype=q.dtype)
q = tf.multiply(q, tf.math.rsqrt(f_dim_per_head)) # (bs, n_heads, qlen, dim_per_head)
k = tf.cast(k, dtype=q.dtype)
scores = tf.matmul(q, k, transpose_b=True) # (bs, n_heads, qlen, klen)
mask = tf.reshape(mask, mask_reshape) # (bs, n_heads, qlen, klen)
# scores.masked_fill_(mask, -float('inf')) # (bs, n_heads, qlen, klen)
mask = tf.cast(mask, dtype=scores.dtype)
scores = scores - 1e30 * (1.0 - mask)
weights = tf.nn.softmax(scores, axis=-1) # (bs, n_heads, qlen, klen)
weights = self.dropout(weights, training=training) # (bs, n_heads, qlen, klen)
# Mask heads if we want to
if head_mask is not None:
weights = weights * head_mask
context = tf.matmul(weights, v) # (bs, n_heads, qlen, dim_per_head)
context = unshape(context) # (bs, qlen, dim)
outputs = (self.out_lin(context),)
if output_attentions:
outputs = outputs + (weights,)
return outputs
class TFXLMTransformerFFN(tf.keras.layers.Layer):
def __init__(self, in_dim, dim_hidden, out_dim, config, **kwargs):
super().__init__(**kwargs)
self.lin1 = tf.keras.layers.Dense(dim_hidden, kernel_initializer=get_initializer(config.init_std), name="lin1")
self.lin2 = tf.keras.layers.Dense(out_dim, kernel_initializer=get_initializer(config.init_std), name="lin2")
self.act = get_tf_activation("gelu") if config.gelu_activation else get_tf_activation("relu")
self.dropout = tf.keras.layers.Dropout(config.dropout)
def call(self, input, training=False):
x = self.lin1(input)
x = self.act(x)
x = self.lin2(x)
x = self.dropout(x, training=training)
return x
@keras_serializable
class TFXLMMainLayer(tf.keras.layers.Layer):
config_class = XLMConfig
def __init__(self, config, **kwargs):
super().__init__(**kwargs)
self.config = config
self.output_hidden_states = config.output_hidden_states
self.output_attentions = config.output_attentions
self.return_dict = config.use_return_dict
# encoder / decoder, output layer
self.is_encoder = config.is_encoder
self.is_decoder = not config.is_encoder
if self.is_decoder:
raise NotImplementedError("Currently XLM can only be used as an encoder")
# self.with_output = with_output
self.causal = config.causal
# dictionary / languages
self.n_langs = config.n_langs
self.use_lang_emb = config.use_lang_emb
self.n_words = config.n_words
self.eos_index = config.eos_index
self.pad_index = config.pad_index
# self.dico = dico
# self.id2lang = config.id2lang
# self.lang2id = config.lang2id
# assert len(self.dico) == self.n_words
# assert len(self.id2lang) == len(self.lang2id) == self.n_langs
# model parameters
self.dim = config.emb_dim # 512 by default
self.hidden_dim = self.dim * 4 # 2048 by default
self.n_heads = config.n_heads # 8 by default
self.n_layers = config.n_layers
self.max_position_embeddings = config.max_position_embeddings
self.embed_init_std = config.embed_init_std
assert self.dim % self.n_heads == 0, "transformer dim must be a multiple of n_heads"
# embeddings
self.dropout = tf.keras.layers.Dropout(config.dropout)
self.attention_dropout = tf.keras.layers.Dropout(config.attention_dropout)
if config.sinusoidal_embeddings:
raise NotImplementedError
# create_sinusoidal_embeddings(config.max_position_embeddings, self.dim, out=self.position_embeddings.weight)
self.embeddings = TFSharedEmbeddings(
self.n_words, self.dim, initializer_range=config.embed_init_std, name="embeddings"
) # padding_idx=self.pad_index)
self.layer_norm_emb = tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="layer_norm_emb")
# transformer layers
self.attentions = []
self.layer_norm1 = []
self.ffns = []
self.layer_norm2 = []
# if self.is_decoder:
# self.layer_norm15 = []
# self.encoder_attn = []
for i in range(self.n_layers):
self.attentions.append(
TFXLMMultiHeadAttention(self.n_heads, self.dim, config=config, name="attentions_._{}".format(i))
)
self.layer_norm1.append(
tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="layer_norm1_._{}".format(i))
)
# if self.is_decoder:
# self.layer_norm15.append(nn.LayerNorm(self.dim, eps=config.layer_norm_eps))
# self.encoder_attn.append(MultiHeadAttention(self.n_heads, self.dim, dropout=self.attention_dropout))
self.ffns.append(
TFXLMTransformerFFN(self.dim, self.hidden_dim, self.dim, config=config, name="ffns_._{}".format(i))
)
self.layer_norm2.append(
tf.keras.layers.LayerNormalization(epsilon=config.layer_norm_eps, name="layer_norm2_._{}".format(i))
)
if hasattr(config, "pruned_heads"):
pruned_heads = config.pruned_heads.copy().items()
config.pruned_heads = {}
for layer, heads in pruned_heads:
if self.attentions[int(layer)].n_heads == config.n_heads:
self.prune_heads({int(layer): list(map(int, heads))})
def build(self, input_shape):
with tf.name_scope("position_embeddings"):
self.position_embeddings = self.add_weight(
name="embeddings",
shape=[self.max_position_embeddings, self.dim],
initializer=get_initializer(self.embed_init_std),
)
if self.n_langs > 1 and self.use_lang_emb:
with tf.name_scope("lang_embeddings"):
self.lang_embeddings = self.add_weight(
name="embeddings",
shape=[self.n_langs, self.dim],
initializer=get_initializer(self.embed_init_std),
)
super().build(input_shape)
def get_input_embeddings(self):
return self.embeddings
def set_input_embeddings(self, value):
self.embeddings.weight = value
self.embeddings.vocab_size = shape_list(value)[0]
def _prune_heads(self, heads_to_prune):
"""
Prunes heads of the model. heads_to_prune: dict of {layer_num: list of heads to prune in this layer} See base
class PreTrainedModel
"""
raise NotImplementedError
def call(
self,
input_ids=None,
attention_mask=None,
langs=None,
token_type_ids=None,
position_ids=None,
lengths=None,
cache=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
training=False,
**kwargs,
):
# removed: src_enc=None, src_len=None
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
langs=langs,
token_type_ids=token_type_ids,
position_ids=position_ids,
lengths=lengths,
cache=cache,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
kwargs_call=kwargs,
)
if inputs["input_ids"] is not None and inputs["inputs_embeds"] is not None:
raise ValueError("You cannot specify both input_ids and inputs_embeds at the same time")
elif inputs["input_ids"] is not None:
bs, slen = shape_list(inputs["input_ids"])
elif inputs["inputs_embeds"] is not None:
bs, slen = shape_list(inputs["inputs_embeds"])[:2]
else:
raise ValueError("You have to specify either input_ids or inputs_embeds")
if inputs["lengths"] is None:
if inputs["input_ids"] is not None:
inputs["lengths"] = tf.reduce_sum(
tf.cast(tf.not_equal(inputs["input_ids"], self.pad_index), dtype=inputs["input_ids"].dtype), axis=1
)
else:
inputs["lengths"] = tf.convert_to_tensor([slen] * bs)
# mask = input_ids != self.pad_index
# check inputs
# assert shape_list(lengths)[0] == bs
if tf.executing_eagerly():
tf.debugging.assert_equal(
shape_list(inputs["lengths"])[0], bs
), f"Expected batch size {shape_list(inputs['lengths'])[0]} and received batch size {bs} mismatched"
# assert lengths.max().item() <= slen
# input_ids = input_ids.transpose(0, 1) # batch size as dimension 0
# assert (src_enc is None) == (src_len is None)
# if src_enc is not None:
# assert self.is_decoder
# assert src_enc.size(0) == bs
# generate masks
mask, attn_mask = get_masks(slen, inputs["lengths"], self.causal, padding_mask=inputs["attention_mask"])
# if self.is_decoder and src_enc is not None:
# src_mask = torch.arange(src_len.max(), dtype=torch.long, device=lengths.device) < src_len[:, None]
# position_ids
if inputs["position_ids"] is None:
inputs["position_ids"] = tf.expand_dims(tf.range(slen), axis=0)
inputs["position_ids"] = tf.tile(inputs["position_ids"], (bs, 1))
if tf.executing_eagerly():
# assert shape_list(position_ids) == [bs, slen] # (slen, bs)
tf.debugging.assert_equal(
shape_list(inputs["position_ids"]), [bs, slen]
), f"Position id shape {shape_list(inputs['position_ids'])} and input shape {[bs, slen]} mismatched"
# position_ids = position_ids.transpose(0, 1)
# langs
if inputs["langs"] is not None and tf.executing_eagerly():
# assert shape_list(langs) == [bs, slen] # (slen, bs)
tf.debugging.assert_equal(
shape_list(inputs["langs"]), [bs, slen]
), f"Lang shape {shape_list(inputs['langs'])} and input shape {[bs, slen]} mismatched"
# langs = langs.transpose(0, 1)
# Prepare head mask if needed
# 1.0 in head_mask indicate we keep the head
# attention_probs has shape bsz x n_heads x N x N
# input head_mask has shape [num_heads] or [num_hidden_layers x num_heads]
# and head_mask is converted to shape [num_hidden_layers x batch x num_heads x qlen x klen]
if inputs["head_mask"] is not None:
raise NotImplementedError
else:
inputs["head_mask"] = [None] * self.n_layers
# do not recompute cached elements
if inputs["cache"] is not None and inputs["input_ids"] is not None:
_slen = slen - inputs["cache"]["slen"]
inputs["input_ids"] = inputs["input_ids"][:, -_slen:]
inputs["position_ids"] = inputs["position_ids"][:, -_slen:]
if inputs["langs"] is not None:
inputs["langs"] = inputs["langs"][:, -_slen:]
mask = mask[:, -_slen:]
attn_mask = attn_mask[:, -_slen:]
# embeddings
if inputs["inputs_embeds"] is None:
inputs["inputs_embeds"] = self.embeddings(inputs["input_ids"])
tensor = inputs["inputs_embeds"] + tf.gather(self.position_embeddings, inputs["position_ids"])
if inputs["langs"] is not None and self.use_lang_emb and self.n_langs > 1:
tensor = tensor + tf.gather(self.lang_embeddings, inputs["langs"])
if inputs["token_type_ids"] is not None:
tensor = tensor + self.embeddings(inputs["token_type_ids"])
tensor = self.layer_norm_emb(tensor)
tensor = self.dropout(tensor, training=inputs["training"])
mask = tf.cast(mask, dtype=tensor.dtype)
tensor = tensor * tf.expand_dims(mask, axis=-1)
# transformer layers
hidden_states = () if inputs["output_hidden_states"] else None
attentions = () if inputs["output_attentions"] else None
for i in range(self.n_layers):
if inputs["output_hidden_states"]:
hidden_states = hidden_states + (tensor,)
# self attention
attn_outputs = self.attentions[i](
tensor,
attn_mask,
None,
inputs["cache"],
inputs["head_mask"][i],
inputs["output_attentions"],
training=inputs["training"],
)
attn = attn_outputs[0]
if inputs["output_attentions"]:
attentions = attentions + (attn_outputs[1],)
attn = self.dropout(attn, training=inputs["training"])
tensor = tensor + attn
tensor = self.layer_norm1[i](tensor)
# encoder attention (for decoder only)
# if self.is_decoder and src_enc is not None:
# attn = self.encoder_attn[i](tensor, src_mask, kv=src_enc, cache=cache)
# attn = F.dropout(attn, p=self.dropout, training=self.training)
# tensor = tensor + attn
# tensor = self.layer_norm15[i](tensor)
# FFN
tensor = tensor + self.ffns[i](tensor)
tensor = self.layer_norm2[i](tensor)
tensor = tensor * tf.expand_dims(mask, axis=-1)
# Add last hidden state
if inputs["output_hidden_states"]:
hidden_states = hidden_states + (tensor,)
# update cache length
if inputs["cache"] is not None:
inputs["cache"]["slen"] += tensor.size(1)
# move back sequence length to dimension 0
# tensor = tensor.transpose(0, 1)
if not inputs["return_dict"]:
return tuple(v for v in [tensor, hidden_states, attentions] if v is not None)
return TFBaseModelOutput(last_hidden_state=tensor, hidden_states=hidden_states, attentions=attentions)
class TFXLMPreTrainedModel(TFPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = XLMConfig
base_model_prefix = "transformer"
@property
def dummy_inputs(self):
# Sometimes XLM has language embeddings so don't forget to build them as well if needed
inputs_list = tf.constant([[7, 6, 0, 0, 1], [1, 2, 3, 0, 0], [0, 0, 0, 4, 5]])
attns_list = tf.constant([[1, 1, 0, 0, 1], [1, 1, 1, 0, 0], [1, 0, 0, 1, 1]])
if self.config.use_lang_emb and self.config.n_langs > 1:
return {
"input_ids": inputs_list,
"attention_mask": attns_list,
"langs": tf.constant([[1, 1, 0, 0, 1], [1, 1, 1, 0, 0], [1, 0, 0, 1, 1]]),
}
else:
return {"input_ids": inputs_list, "attention_mask": attns_list}
# Remove when XLMWithLMHead computes loss like other LM models
@dataclass
class TFXLMWithLMHeadModelOutput(ModelOutput):
"""
Base class for :class:`~transformers.TFXLMWithLMHeadModel` outputs.
Args:
logits (:obj:`tf.Tensor` of shape :obj:`(batch_size, sequence_length, config.vocab_size)`):
Prediction scores of the language modeling head (scores for each vocabulary token before SoftMax).
hidden_states (:obj:`tuple(tf.Tensor)`, `optional`, returned when ``output_hidden_states=True`` is passed or when ``config.output_hidden_states=True``):
Tuple of :obj:`tf.Tensor` (one for the output of the embeddings + one for the output of each layer) of
shape :obj:`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (:obj:`tuple(tf.Tensor)`, `optional`, returned when ``output_attentions=True`` is passed or when ``config.output_attentions=True``):
Tuple of :obj:`tf.Tensor` (one for each layer) of shape :obj:`(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
logits: tf.Tensor = None
hidden_states: Optional[Tuple[tf.Tensor]] = None
attentions: Optional[Tuple[tf.Tensor]] = None
XLM_START_DOCSTRING = r"""
This model inherits from :class:`~transformers.TFPreTrainedModel`. Check the superclass documentation for the
generic methods the library implements for all its model (such as downloading or saving, resizing the input
embeddings, pruning heads etc.)
This model is also a `tf.keras.Model <https://www.tensorflow.org/api_docs/python/tf/keras/Model>`__ subclass. Use
it as a regular TF 2.0 Keras Model and refer to the TF 2.0 documentation for all matter related to general usage
and behavior.
.. note::
TF 2.0 models accepts two formats as inputs:
- having all inputs as keyword arguments (like PyTorch models), or
- having all inputs as a list, tuple or dict in the first positional arguments.
This second option is useful when using :meth:`tf.keras.Model.fit` method which currently requires having all
the tensors in the first argument of the model call function: :obj:`model(inputs)`.
If you choose this second option, there are three possibilities you can use to gather all the input Tensors in
the first positional argument :
- a single Tensor with :obj:`input_ids` only and nothing else: :obj:`model(inputs_ids)`
- a list of varying length with one or several input Tensors IN THE ORDER given in the docstring:
:obj:`model([input_ids, attention_mask])` or :obj:`model([input_ids, attention_mask, token_type_ids])`
- a dictionary with one or several input Tensors associated to the input names given in the docstring:
:obj:`model({"input_ids": input_ids, "token_type_ids": token_type_ids})`
Parameters:
config (:class:`~transformers.XLMConfig`): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the :meth:`~transformers.PreTrainedModel.from_pretrained` method to load the model
weights.
"""
XLM_INPUTS_DOCSTRING = r"""
Args:
input_ids (:obj:`Numpy array` or :obj:`tf.Tensor` of shape :obj:`({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using :class:`~transformers.BertTokenizer`. See
:func:`transformers.PreTrainedTokenizer.__call__` and :func:`transformers.PreTrainedTokenizer.encode` for
details.
`What are input IDs? <../glossary.html#input-ids>`__
attention_mask (:obj:`Numpy array` or :obj:`tf.Tensor` of shape :obj:`({0})`, `optional`):
Mask to avoid performing attention on padding token indices. Mask values selected in ``[0, 1]``:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
`What are attention masks? <../glossary.html#attention-mask>`__
langs (:obj:`tf.Tensor` or :obj:`Numpy array` of shape :obj:`({0})`, `optional`):
A parallel sequence of tokens to be used to indicate the language of each token in the input. Indices are
languages ids which can be obtained from the language names by using two conversion mappings provided in
the configuration of the model (only provided for multilingual models). More precisely, the `language name
to language id` mapping is in :obj:`model.config.lang2id` (which is a dictionary string to int) and the
`language id to language name` mapping is in :obj:`model.config.id2lang` (dictionary int to string).
See usage examples detailed in the :doc:`multilingual documentation <../multilingual>`.
token_type_ids (:obj:`Numpy array` or :obj:`tf.Tensor` of shape :obj:`({0})`, `optional`):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in ``[0,
1]``:
- 0 corresponds to a `sentence A` token,
- 1 corresponds to a `sentence B` token.
`What are token type IDs? <../glossary.html#token-type-ids>`__
position_ids (:obj:`Numpy array` or :obj:`tf.Tensor` of shape :obj:`({0})`, `optional`):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range ``[0,
config.max_position_embeddings - 1]``.
`What are position IDs? <../glossary.html#position-ids>`__
lengths (:obj:`tf.Tensor` or :obj:`Numpy array` of shape :obj:`(batch_size,)`, `optional`):
Length of each sentence that can be used to avoid performing attention on padding token indices. You can
also use `attention_mask` for the same result (see above), kept here for compatibility. Indices selected in
``[0, ..., input_ids.size(-1)]``.
cache (:obj:`Dict[str, tf.Tensor]`, `optional`):
Dictionary string to ``torch.FloatTensor`` that contains precomputed hidden states (key and values in the
attention blocks) as computed by the model (see :obj:`cache` output below). Can be used to speed up
sequential decoding.
The dictionary object will be modified in-place during the forward pass to add newly computed
hidden-states.
head_mask (:obj:`Numpy array` or :obj:`tf.Tensor` of shape :obj:`(num_heads,)` or :obj:`(num_layers, num_heads)`, `optional`):
Mask to nullify selected heads of the self-attention modules. Mask values selected in ``[0, 1]``:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
inputs_embeds (:obj:`tf.Tensor` of shape :obj:`({0}, hidden_size)`, `optional`):
Optionally, instead of passing :obj:`input_ids` you can choose to directly pass an embedded representation.
This is useful if you want more control over how to convert :obj:`input_ids` indices into associated
vectors than the model's internal embedding lookup matrix.
output_attentions (:obj:`bool`, `optional`):
Whether or not to return the attentions tensors of all attention layers. See ``attentions`` under returned
tensors for more detail. This argument can be used only in eager mode, in graph mode the value in the
config will be used instead.
output_hidden_states (:obj:`bool`, `optional`):
Whether or not to return the hidden states of all layers. See ``hidden_states`` under returned tensors for
more detail. This argument can be used only in eager mode, in graph mode the value in the config will be
used instead.
return_dict (:obj:`bool`, `optional`):
Whether or not to return a :class:`~transformers.file_utils.ModelOutput` instead of a plain tuple. This
argument can be used in eager mode, in graph mode the value will always be set to True.
training (:obj:`bool`, `optional`, defaults to :obj:`False`):
Whether or not to use the model in training mode (some modules like dropout modules have different
behaviors between training and evaluation).
"""
@add_start_docstrings(
"The bare XLM Model transformer outputting raw hidden-states without any specific head on top.",
XLM_START_DOCSTRING,
)
class TFXLMModel(TFXLMPreTrainedModel):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.transformer = TFXLMMainLayer(config, name="transformer")
@add_start_docstrings_to_model_forward(XLM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFBaseModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids=None,
attention_mask=None,
langs=None,
token_type_ids=None,
position_ids=None,
lengths=None,
cache=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
training=False,
**kwargs,
):
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
langs=langs,
token_type_ids=token_type_ids,
position_ids=position_ids,
lengths=lengths,
cache=cache,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
kwargs_call=kwargs,
)
outputs = self.transformer(
input_ids=inputs["input_ids"],
attention_mask=inputs["attention_mask"],
langs=inputs["langs"],
token_type_ids=inputs["token_type_ids"],
position_ids=inputs["position_ids"],
lengths=inputs["lengths"],
cache=inputs["cache"],
head_mask=inputs["head_mask"],
inputs_embeds=inputs["inputs_embeds"],
output_attentions=inputs["output_attentions"],
output_hidden_states=inputs["output_hidden_states"],
return_dict=inputs["return_dict"],
training=inputs["training"],
)
return outputs
# Copied from transformers.models.distilbert.modeling_tf_distilbert.TFDistilBertModel.serving_output
def serving_output(self, output):
hs = tf.convert_to_tensor(output.hidden_states) if self.config.output_hidden_states else None
attns = tf.convert_to_tensor(output.attentions) if self.config.output_attentions else None
return TFBaseModelOutput(last_hidden_state=output.last_hidden_state, hidden_states=hs, attentions=attns)
class TFXLMPredLayer(tf.keras.layers.Layer):
"""
Prediction layer (cross_entropy or adaptive_softmax).
"""
def __init__(self, config, input_embeddings, **kwargs):
super().__init__(**kwargs)
self.asm = config.asm
self.n_words = config.n_words
self.pad_index = config.pad_index
if config.asm is False:
self.input_embeddings = input_embeddings
else:
raise NotImplementedError
# self.proj = nn.AdaptiveLogSoftmaxWithLoss(
# in_features=dim,
# n_classes=config.n_words,
# cutoffs=config.asm_cutoffs,
# div_value=config.asm_div_value,
# head_bias=True, # default is False
# )
def build(self, input_shape):
# The output weights are the same as the input embeddings, but there is an output-only bias for each token.
self.bias = self.add_weight(shape=(self.n_words,), initializer="zeros", trainable=True, name="bias")
super().build(input_shape)
def get_output_embeddings(self):
return self.input_embeddings
def set_output_embeddings(self, value):
self.input_embeddings.weight = value
self.input_embeddings.vocab_size = shape_list(value)[0]
def get_bias(self):
return {"bias": self.bias}
def set_bias(self, value):
self.bias = value["bias"]
self.vocab_size = shape_list(value["bias"])[0]
def call(self, hidden_states):
hidden_states = self.input_embeddings(hidden_states, mode="linear")
hidden_states = hidden_states + self.bias
return hidden_states
@add_start_docstrings(
"""
The XLM Model transformer with a language modeling head on top (linear layer with weights tied to the input
embeddings).
""",
XLM_START_DOCSTRING,
)
class TFXLMWithLMHeadModel(TFXLMPreTrainedModel):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.transformer = TFXLMMainLayer(config, name="transformer")
self.pred_layer = TFXLMPredLayer(config, self.transformer.embeddings, name="pred_layer_._proj")
def get_lm_head(self):
return self.pred_layer
def get_prefix_bias_name(self):
warnings.warn("The method get_prefix_bias_name is deprecated. Please use `get_bias` instead.", FutureWarning)
return self.name + "/" + self.pred_layer.name
def prepare_inputs_for_generation(self, inputs, **kwargs):
mask_token_id = self.config.mask_token_id
lang_id = self.config.lang_id
effective_batch_size = inputs.shape[0]
mask_token = tf.fill((effective_batch_size, 1), 1) * mask_token_id
inputs = tf.concat([inputs, mask_token], axis=1)
if lang_id is not None:
langs = tf.ones_like(inputs) * lang_id
else:
langs = None
return {"input_ids": inputs, "langs": langs}
@add_start_docstrings_to_model_forward(XLM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFXLMWithLMHeadModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids=None,
attention_mask=None,
langs=None,
token_type_ids=None,
position_ids=None,
lengths=None,
cache=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
training=False,
**kwargs,
):
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
langs=langs,
token_type_ids=token_type_ids,
position_ids=position_ids,
lengths=lengths,
cache=cache,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
training=training,
kwargs_call=kwargs,
)
transformer_outputs = self.transformer(
input_ids=inputs["input_ids"],
attention_mask=inputs["attention_mask"],
langs=inputs["langs"],
token_type_ids=inputs["token_type_ids"],
position_ids=inputs["position_ids"],
lengths=inputs["lengths"],
cache=inputs["cache"],
head_mask=inputs["head_mask"],
inputs_embeds=inputs["inputs_embeds"],
output_attentions=inputs["output_attentions"],
output_hidden_states=inputs["output_hidden_states"],
return_dict=inputs["return_dict"],
training=inputs["training"],
)
output = transformer_outputs[0]
outputs = self.pred_layer(output)
if not inputs["return_dict"]:
return (outputs,) + transformer_outputs[1:]
return TFXLMWithLMHeadModelOutput(
logits=outputs, hidden_states=transformer_outputs.hidden_states, attentions=transformer_outputs.attentions
)
def serving_output(self, output):
hs = tf.convert_to_tensor(output.hidden_states) if self.config.output_hidden_states else None
attns = tf.convert_to_tensor(output.attentions) if self.config.output_attentions else None
return TFXLMWithLMHeadModelOutput(logits=output.logits, hidden_states=hs, attentions=attns)
@add_start_docstrings(
"""
XLM Model with a sequence classification/regression head on top (a linear layer on top of the pooled output) e.g.
for GLUE tasks.
""",
XLM_START_DOCSTRING,
)
class TFXLMForSequenceClassification(TFXLMPreTrainedModel, TFSequenceClassificationLoss):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.num_labels = config.num_labels
self.transformer = TFXLMMainLayer(config, name="transformer")
self.sequence_summary = TFSequenceSummary(config, initializer_range=config.init_std, name="sequence_summary")
@add_start_docstrings_to_model_forward(XLM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFSequenceClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids=None,
attention_mask=None,
langs=None,
token_type_ids=None,
position_ids=None,
lengths=None,
cache=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
labels=None,
training=False,
**kwargs,
):
r"""
labels (:obj:`tf.Tensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for computing the sequence classification/regression loss. Indices should be in ``[0, ...,
config.num_labels - 1]``. If ``config.num_labels == 1`` a regression loss is computed (Mean-Square loss),
If ``config.num_labels > 1`` a classification loss is computed (Cross-Entropy).
"""
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
langs=langs,
token_type_ids=token_type_ids,
position_ids=position_ids,
lengths=lengths,
cache=cache,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
labels=labels,
training=training,
kwargs_call=kwargs,
)
transformer_outputs = self.transformer(
input_ids=inputs["input_ids"],
attention_mask=inputs["attention_mask"],
langs=inputs["langs"],
token_type_ids=inputs["token_type_ids"],
position_ids=inputs["position_ids"],
lengths=inputs["lengths"],
cache=inputs["cache"],
head_mask=inputs["head_mask"],
inputs_embeds=inputs["inputs_embeds"],
output_attentions=inputs["output_attentions"],
output_hidden_states=inputs["output_hidden_states"],
return_dict=inputs["return_dict"],
training=inputs["training"],
)
output = transformer_outputs[0]
logits = self.sequence_summary(output)
loss = None if inputs["labels"] is None else self.compute_loss(inputs["labels"], logits)
if not inputs["return_dict"]:
output = (logits,) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return TFSequenceClassifierOutput(
loss=loss,
logits=logits,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
# Copied from transformers.models.bert.modeling_tf_bert.TFBertForSequenceClassification.serving_output
def serving_output(self, output: TFSequenceClassifierOutput) -> TFSequenceClassifierOutput:
hs = tf.convert_to_tensor(output.hidden_states) if self.config.output_hidden_states else None
attns = tf.convert_to_tensor(output.attentions) if self.config.output_attentions else None
return TFSequenceClassifierOutput(logits=output.logits, hidden_states=hs, attentions=attns)
@add_start_docstrings(
"""
XLM Model with a multiple choice classification head on top (a linear layer on top of the pooled output and a
softmax) e.g. for RocStories/SWAG tasks.
""",
XLM_START_DOCSTRING,
)
class TFXLMForMultipleChoice(TFXLMPreTrainedModel, TFMultipleChoiceLoss):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.transformer = TFXLMMainLayer(config, name="transformer")
self.sequence_summary = TFSequenceSummary(config, initializer_range=config.init_std, name="sequence_summary")
self.logits_proj = tf.keras.layers.Dense(
1, kernel_initializer=get_initializer(config.initializer_range), name="logits_proj"
)
@property
def dummy_inputs(self):
"""
Dummy inputs to build the network.
Returns:
tf.Tensor with dummy inputs
"""
# Sometimes XLM has language embeddings so don't forget to build them as well if needed
if self.config.use_lang_emb and self.config.n_langs > 1:
return {
"input_ids": tf.constant(MULTIPLE_CHOICE_DUMMY_INPUTS),
"langs": tf.constant(MULTIPLE_CHOICE_DUMMY_INPUTS),
}
else:
return {
"input_ids": tf.constant(MULTIPLE_CHOICE_DUMMY_INPUTS),
}
@add_start_docstrings_to_model_forward(XLM_INPUTS_DOCSTRING.format("batch_size, num_choices, sequence_length"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFMultipleChoiceModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids=None,
attention_mask=None,
langs=None,
token_type_ids=None,
position_ids=None,
lengths=None,
cache=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
labels=None,
training=False,
**kwargs,
):
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
langs=langs,
token_type_ids=token_type_ids,
position_ids=position_ids,
lengths=lengths,
cache=cache,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
labels=labels,
training=training,
kwargs_call=kwargs,
)
if inputs["input_ids"] is not None:
num_choices = shape_list(inputs["input_ids"])[1]
seq_length = shape_list(inputs["input_ids"])[2]
else:
num_choices = shape_list(inputs["inputs_embeds"])[1]
seq_length = shape_list(inputs["inputs_embeds"])[2]
flat_input_ids = tf.reshape(inputs["input_ids"], (-1, seq_length)) if inputs["input_ids"] is not None else None
flat_attention_mask = (
tf.reshape(inputs["attention_mask"], (-1, seq_length)) if inputs["attention_mask"] is not None else None
)
flat_token_type_ids = (
tf.reshape(inputs["token_type_ids"], (-1, seq_length)) if inputs["token_type_ids"] is not None else None
)
flat_position_ids = (
tf.reshape(inputs["position_ids"], (-1, seq_length)) if inputs["position_ids"] is not None else None
)
flat_langs = tf.reshape(inputs["langs"], (-1, seq_length)) if inputs["langs"] is not None else None
flat_inputs_embeds = (
tf.reshape(inputs["inputs_embeds"], (-1, seq_length, shape_list(inputs["inputs_embeds"])[3]))
if inputs["inputs_embeds"] is not None
else None
)
if inputs["lengths"] is not None:
logger.warn(
"The `lengths` parameter cannot be used with the XLM multiple choice models. Please use the "
"attention mask instead.",
)
inputs["lengths"] = None
transformer_outputs = self.transformer(
flat_input_ids,
flat_attention_mask,
flat_langs,
flat_token_type_ids,
flat_position_ids,
inputs["lengths"],
inputs["cache"],
inputs["head_mask"],
flat_inputs_embeds,
inputs["output_attentions"],
inputs["output_hidden_states"],
return_dict=inputs["return_dict"],
training=inputs["training"],
)
output = transformer_outputs[0]
logits = self.sequence_summary(output)
logits = self.logits_proj(logits)
reshaped_logits = tf.reshape(logits, (-1, num_choices))
loss = None if inputs["labels"] is None else self.compute_loss(inputs["labels"], reshaped_logits)
if not inputs["return_dict"]:
output = (reshaped_logits,) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return TFMultipleChoiceModelOutput(
loss=loss,
logits=reshaped_logits,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
@tf.function(
input_signature=[
{
"input_ids": tf.TensorSpec((None, None, None), tf.int32, name="input_ids"),
"attention_mask": tf.TensorSpec((None, None, None), tf.int32, name="attention_mask"),
"token_type_ids": tf.TensorSpec((None, None, None), tf.int32, name="token_type_ids"),
}
]
)
# Copied from transformers.models.bert.modeling_tf_bert.TFBertForMultipleChoice.serving
def serving(self, inputs: Dict[str, tf.Tensor]):
output = self.call(input_ids=inputs)
return self.serving_output(output)
# Copied from transformers.models.bert.modeling_tf_bert.TFBertForMultipleChoice.serving_output
def serving_output(self, output: TFMultipleChoiceModelOutput) -> TFMultipleChoiceModelOutput:
hs = tf.convert_to_tensor(output.hidden_states) if self.config.output_hidden_states else None
attns = tf.convert_to_tensor(output.attentions) if self.config.output_attentions else None
return TFMultipleChoiceModelOutput(logits=output.logits, hidden_states=hs, attentions=attns)
@add_start_docstrings(
"""
XLM Model with a token classification head on top (a linear layer on top of the hidden-states output) e.g. for
Named-Entity-Recognition (NER) tasks.
""",
XLM_START_DOCSTRING,
)
class TFXLMForTokenClassification(TFXLMPreTrainedModel, TFTokenClassificationLoss):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.num_labels = config.num_labels
self.transformer = TFXLMMainLayer(config, name="transformer")
self.dropout = tf.keras.layers.Dropout(config.dropout)
self.classifier = tf.keras.layers.Dense(
config.num_labels, kernel_initializer=get_initializer(config.init_std), name="classifier"
)
@add_start_docstrings_to_model_forward(XLM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFTokenClassifierOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids=None,
attention_mask=None,
langs=None,
token_type_ids=None,
position_ids=None,
lengths=None,
cache=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
labels=None,
training=False,
**kwargs,
):
r"""
labels (:obj:`tf.Tensor` of shape :obj:`(batch_size, sequence_length)`, `optional`):
Labels for computing the token classification loss. Indices should be in ``[0, ..., config.num_labels -
1]``.
"""
inputs = input_processing(
func=self.call,
input_ids=input_ids,
config=self.config,
attention_mask=attention_mask,
langs=langs,
token_type_ids=token_type_ids,
position_ids=position_ids,
lengths=lengths,
cache=cache,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
labels=labels,
training=training,
kwargs_call=kwargs,
)
transformer_outputs = self.transformer(
input_ids=inputs["input_ids"],
attention_mask=inputs["attention_mask"],
langs=inputs["langs"],
token_type_ids=inputs["token_type_ids"],
position_ids=inputs["position_ids"],
lengths=inputs["lengths"],
cache=inputs["cache"],
head_mask=inputs["head_mask"],
inputs_embeds=inputs["inputs_embeds"],
output_attentions=inputs["output_attentions"],
output_hidden_states=inputs["output_hidden_states"],
return_dict=inputs["return_dict"],
training=inputs["training"],
)
sequence_output = transformer_outputs[0]
sequence_output = self.dropout(sequence_output, training=inputs["training"])
logits = self.classifier(sequence_output)
loss = None if inputs["labels"] is None else self.compute_loss(inputs["labels"], logits)
if not inputs["return_dict"]:
output = (logits,) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return TFTokenClassifierOutput(
loss=loss,
logits=logits,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
# Copied from transformers.models.bert.modeling_tf_bert.TFBertForTokenClassification.serving_output
def serving_output(self, output: TFTokenClassifierOutput) -> TFTokenClassifierOutput:
hs = tf.convert_to_tensor(output.hidden_states) if self.config.output_hidden_states else None
attns = tf.convert_to_tensor(output.attentions) if self.config.output_attentions else None
return TFTokenClassifierOutput(logits=output.logits, hidden_states=hs, attentions=attns)
@add_start_docstrings(
"""
XLM Model with a span classification head on top for extractive question-answering tasks like SQuAD (a linear layer
on top of the hidden-states output to compute `span start logits` and `span end logits`).
""",
XLM_START_DOCSTRING,
)
class TFXLMForQuestionAnsweringSimple(TFXLMPreTrainedModel, TFQuestionAnsweringLoss):
def __init__(self, config, *inputs, **kwargs):
super().__init__(config, *inputs, **kwargs)
self.transformer = TFXLMMainLayer(config, name="transformer")
self.qa_outputs = tf.keras.layers.Dense(
config.num_labels, kernel_initializer=get_initializer(config.init_std), name="qa_outputs"
)
@add_start_docstrings_to_model_forward(XLM_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
@add_code_sample_docstrings(
tokenizer_class=_TOKENIZER_FOR_DOC,
checkpoint=_CHECKPOINT_FOR_DOC,
output_type=TFQuestionAnsweringModelOutput,
config_class=_CONFIG_FOR_DOC,
)
def call(
self,
input_ids=None,
attention_mask=None,
langs=None,
token_type_ids=None,
position_ids=None,
lengths=None,
cache=None,
head_mask=None,
inputs_embeds=None,
output_attentions=None,
output_hidden_states=None,
return_dict=None,
start_positions=None,
end_positions=None,
training=False,
**kwargs,
):
r"""
start_positions (:obj:`tf.Tensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for position (index) of the start of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (:obj:`sequence_length`). Position outside of the
sequence are not taken into account for computing the loss.
end_positions (:obj:`tf.Tensor` of shape :obj:`(batch_size,)`, `optional`):
Labels for position (index) of the end of the labelled span for computing the token classification loss.
Positions are clamped to the length of the sequence (:obj:`sequence_length`). Position outside of the
sequence are not taken into account for computing the loss.
"""
inputs = input_processing(
func=self.call,
config=self.config,
input_ids=input_ids,
attention_mask=attention_mask,
langs=langs,
token_type_ids=token_type_ids,
position_ids=position_ids,
lengths=lengths,
cache=cache,
head_mask=head_mask,
inputs_embeds=inputs_embeds,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
start_positions=start_positions,
end_positions=end_positions,
training=training,
kwargs_call=kwargs,
)
transformer_outputs = self.transformer(
input_ids=inputs["input_ids"],
attention_mask=inputs["attention_mask"],
langs=inputs["langs"],
token_type_ids=inputs["token_type_ids"],
position_ids=inputs["position_ids"],
lengths=inputs["lengths"],
cache=inputs["cache"],
head_mask=inputs["head_mask"],
inputs_embeds=inputs["inputs_embeds"],
output_attentions=inputs["output_attentions"],
output_hidden_states=inputs["output_hidden_states"],
return_dict=inputs["return_dict"],
training=inputs["training"],
)
sequence_output = transformer_outputs[0]
logits = self.qa_outputs(sequence_output)
start_logits, end_logits = tf.split(logits, 2, axis=-1)
start_logits = tf.squeeze(start_logits, axis=-1)
end_logits = tf.squeeze(end_logits, axis=-1)
loss = None
if inputs["start_positions"] is not None and inputs["end_positions"] is not None:
labels = {"start_position": inputs["start_positions"]}
labels["end_position"] = inputs["end_positions"]
loss = self.compute_loss(labels, (start_logits, end_logits))
if not inputs["return_dict"]:
output = (start_logits, end_logits) + transformer_outputs[1:]
return ((loss,) + output) if loss is not None else output
return TFQuestionAnsweringModelOutput(
loss=loss,
start_logits=start_logits,
end_logits=end_logits,
hidden_states=transformer_outputs.hidden_states,
attentions=transformer_outputs.attentions,
)
# Copied from transformers.models.bert.modeling_tf_bert.TFBertForQuestionAnswering.serving_output
def serving_output(self, output: TFQuestionAnsweringModelOutput) -> TFQuestionAnsweringModelOutput:
hs = tf.convert_to_tensor(output.hidden_states) if self.config.output_hidden_states else None
attns = tf.convert_to_tensor(output.attentions) if self.config.output_attentions else None
return TFQuestionAnsweringModelOutput(
start_logits=output.start_logits, end_logits=output.end_logits, hidden_states=hs, attentions=attns
)
|
AdaMix/src/transformers/models/xlm/modeling_tf_xlm.py/0
|
{
"file_path": "AdaMix/src/transformers/models/xlm/modeling_tf_xlm.py",
"repo_id": "AdaMix",
"token_count": 26560
}
| 65 |
#!/usr/bin/env python
# coding=utf-8
# Copyright 2021 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from packaging import version
from .. import __version__
def check_min_version(min_version):
if version.parse(__version__) < version.parse(min_version):
if "dev" in min_version:
error_message = (
"This example requires a source install from 🤗 Transformers (see "
"`https://huggingface.co/transformers/installation.html#installing-from-source`),"
)
else:
error_message = f"This example requires a minimum version of {min_version},"
error_message += f" but the version found is {__version__}.\n"
raise ImportError(
error_message
+ (
"Check out https://huggingface.co/transformers/examples.html for the examples corresponding to other "
"versions of 🤗 Transformers."
)
)
|
AdaMix/src/transformers/utils/__init__.py/0
|
{
"file_path": "AdaMix/src/transformers/utils/__init__.py",
"repo_id": "AdaMix",
"token_count": 540
}
| 66 |
# THIS FILE HAS BEEN AUTOGENERATED. To update:
# 1. modify: models/auto/modeling_auto.py
# 2. run: python utils/class_mapping_update.py
from collections import OrderedDict
MODEL_FOR_QUESTION_ANSWERING_MAPPING_NAMES = OrderedDict(
[
("ConvBertConfig", "ConvBertForQuestionAnswering"),
("LEDConfig", "LEDForQuestionAnswering"),
("DistilBertConfig", "DistilBertForQuestionAnswering"),
("AlbertConfig", "AlbertForQuestionAnswering"),
("CamembertConfig", "CamembertForQuestionAnswering"),
("BartConfig", "BartForQuestionAnswering"),
("MBartConfig", "MBartForQuestionAnswering"),
("LongformerConfig", "LongformerForQuestionAnswering"),
("XLMRobertaConfig", "XLMRobertaForQuestionAnswering"),
("RobertaConfig", "RobertaForQuestionAnswering"),
("SqueezeBertConfig", "SqueezeBertForQuestionAnswering"),
("BertConfig", "BertForQuestionAnswering"),
("XLNetConfig", "XLNetForQuestionAnsweringSimple"),
("FlaubertConfig", "FlaubertForQuestionAnsweringSimple"),
("MobileBertConfig", "MobileBertForQuestionAnswering"),
("XLMConfig", "XLMForQuestionAnsweringSimple"),
("ElectraConfig", "ElectraForQuestionAnswering"),
("ReformerConfig", "ReformerForQuestionAnswering"),
("FunnelConfig", "FunnelForQuestionAnswering"),
("LxmertConfig", "LxmertForQuestionAnswering"),
("MPNetConfig", "MPNetForQuestionAnswering"),
("DebertaConfig", "DebertaForQuestionAnswering"),
("DebertaV2Config", "DebertaV2ForQuestionAnswering"),
("IBertConfig", "IBertForQuestionAnswering"),
]
)
|
AdaMix/src/transformers/utils/modeling_auto_mapping.py/0
|
{
"file_path": "AdaMix/src/transformers/utils/modeling_auto_mapping.py",
"repo_id": "AdaMix",
"token_count": 659
}
| 67 |
## Copyright 2020 The HuggingFace Team. All rights reserved.
##
## Licensed under the Apache License, Version 2.0 (the "License");
## you may not use this file except in compliance with the License.
## You may obtain a copy of the License at
##
## http://www.apache.org/licenses/LICENSE-2.0
##
## Unless required by applicable law or agreed to in writing, software
## distributed under the License is distributed on an "AS IS" BASIS,
## WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
## See the License for the specific language governing permissions and
## limitations under the License.
## This file is made so that specific statements may be copied inside existing files. This is useful to copy
## import statements in __init__.py, or to complete model lists in the AUTO files.
##
## It is to be used as such:
## Put '# To replace in: "FILE_PATH"' in order to indicate the contents will be copied in the file at path FILE_PATH
## Put '# Below: "STATEMENT"' in order to copy the contents below **the first occurence** of that line in the file at FILE_PATH
## Put '# Replace with:' followed by the lines containing the content to define the content
## End a statement with '# End.'. If starting a new statement without redefining the FILE_PATH, it will continue pasting
## content in that file.
##
## Put '## COMMENT' to comment on the file.
# To replace in: "src/transformers/__init__.py"
# Below: " # PyTorch models structure" if generating PyTorch
# Replace with:
{% if cookiecutter.is_encoder_decoder_model == "False" %}
_import_structure["models.{{cookiecutter.lowercase_modelname}}"].extend(
[
"{{cookiecutter.uppercase_modelname}}_PRETRAINED_MODEL_ARCHIVE_LIST",
"{{cookiecutter.camelcase_modelname}}ForMaskedLM",
"{{cookiecutter.camelcase_modelname}}ForCausalLM",
"{{cookiecutter.camelcase_modelname}}ForMultipleChoice",
"{{cookiecutter.camelcase_modelname}}ForQuestionAnswering",
"{{cookiecutter.camelcase_modelname}}ForSequenceClassification",
"{{cookiecutter.camelcase_modelname}}ForTokenClassification",
"{{cookiecutter.camelcase_modelname}}Layer",
"{{cookiecutter.camelcase_modelname}}Model",
"{{cookiecutter.camelcase_modelname}}PreTrainedModel",
"load_tf_weights_in_{{cookiecutter.lowercase_modelname}}",
]
)
{% else %}
_import_structure["models.{{cookiecutter.lowercase_modelname}}"].extend(
[
"{{cookiecutter.uppercase_modelname}}_PRETRAINED_MODEL_ARCHIVE_LIST",
"{{cookiecutter.camelcase_modelname}}ForCausalLM",
"{{cookiecutter.camelcase_modelname}}ForConditionalGeneration",
"{{cookiecutter.camelcase_modelname}}ForQuestionAnswering",
"{{cookiecutter.camelcase_modelname}}ForSequenceClassification",
"{{cookiecutter.camelcase_modelname}}Model",
]
)
{% endif -%}
# End.
# Below: " # TensorFlow models structure" if generating TensorFlow
# Replace with:
{% if cookiecutter.is_encoder_decoder_model == "False" %}
_import_structure["models.{{cookiecutter.lowercase_modelname}}"].extend(
[
"TF_{{cookiecutter.uppercase_modelname}}_PRETRAINED_MODEL_ARCHIVE_LIST",
"TF{{cookiecutter.camelcase_modelname}}ForMaskedLM",
"TF{{cookiecutter.camelcase_modelname}}ForCausalLM",
"TF{{cookiecutter.camelcase_modelname}}ForMultipleChoice",
"TF{{cookiecutter.camelcase_modelname}}ForQuestionAnswering",
"TF{{cookiecutter.camelcase_modelname}}ForSequenceClassification",
"TF{{cookiecutter.camelcase_modelname}}ForTokenClassification",
"TF{{cookiecutter.camelcase_modelname}}Layer",
"TF{{cookiecutter.camelcase_modelname}}Model",
"TF{{cookiecutter.camelcase_modelname}}PreTrainedModel",
]
)
{% else %}
_import_structure["models.{{cookiecutter.lowercase_modelname}}"].extend(
[
"TF{{cookiecutter.camelcase_modelname}}ForConditionalGeneration",
"TF{{cookiecutter.camelcase_modelname}}Model",
"TF{{cookiecutter.camelcase_modelname}}PreTrainedModel",
]
)
{% endif -%}
# End.
# Below: " # Fast tokenizers"
# Replace with:
_import_structure["models.{{cookiecutter.lowercase_modelname}}"].append("{{cookiecutter.camelcase_modelname}}TokenizerFast")
# End.
# Below: " # Models"
# Replace with:
"models.{{cookiecutter.lowercase_modelname}}": ["{{cookiecutter.uppercase_modelname}}_PRETRAINED_CONFIG_ARCHIVE_MAP", "{{cookiecutter.camelcase_modelname}}Config", "{{cookiecutter.camelcase_modelname}}Tokenizer"],
# End.
# To replace in: "src/transformers/__init__.py"
# Below: " if is_torch_available():" if generating PyTorch
# Replace with:
{% if cookiecutter.is_encoder_decoder_model == "False" %}
from .models.{{cookiecutter.lowercase_modelname}} import (
{{cookiecutter.uppercase_modelname}}_PRETRAINED_MODEL_ARCHIVE_LIST,
{{cookiecutter.camelcase_modelname}}ForMaskedLM,
{{cookiecutter.camelcase_modelname}}ForCausalLM,
{{cookiecutter.camelcase_modelname}}ForMultipleChoice,
{{cookiecutter.camelcase_modelname}}ForQuestionAnswering,
{{cookiecutter.camelcase_modelname}}ForSequenceClassification,
{{cookiecutter.camelcase_modelname}}ForTokenClassification,
{{cookiecutter.camelcase_modelname}}Layer,
{{cookiecutter.camelcase_modelname}}Model,
{{cookiecutter.camelcase_modelname}}PreTrainedModel,
load_tf_weights_in_{{cookiecutter.lowercase_modelname}},
)
{% else %}
from .models.{{cookiecutter.lowercase_modelname}} import (
{{cookiecutter.uppercase_modelname}}_PRETRAINED_MODEL_ARCHIVE_LIST,
{{cookiecutter.camelcase_modelname}}ForConditionalGeneration,
{{cookiecutter.camelcase_modelname}}ForCausalLM,
{{cookiecutter.camelcase_modelname}}ForQuestionAnswering,
{{cookiecutter.camelcase_modelname}}ForSequenceClassification,
{{cookiecutter.camelcase_modelname}}Model,
)
{% endif -%}
# End.
# Below: " if is_tf_available():" if generating TensorFlow
# Replace with:
{% if cookiecutter.is_encoder_decoder_model == "False" %}
from .models.{{cookiecutter.lowercase_modelname}} import (
TF_{{cookiecutter.uppercase_modelname}}_PRETRAINED_MODEL_ARCHIVE_LIST,
TF{{cookiecutter.camelcase_modelname}}ForMaskedLM,
TF{{cookiecutter.camelcase_modelname}}ForCausalLM,
TF{{cookiecutter.camelcase_modelname}}ForMultipleChoice,
TF{{cookiecutter.camelcase_modelname}}ForQuestionAnswering,
TF{{cookiecutter.camelcase_modelname}}ForSequenceClassification,
TF{{cookiecutter.camelcase_modelname}}ForTokenClassification,
TF{{cookiecutter.camelcase_modelname}}Layer,
TF{{cookiecutter.camelcase_modelname}}Model,
TF{{cookiecutter.camelcase_modelname}}PreTrainedModel,
)
{% else %}
from .models.{{cookiecutter.lowercase_modelname}} import (
TF{{cookiecutter.camelcase_modelname}}ForConditionalGeneration,
TF{{cookiecutter.camelcase_modelname}}Model,
TF{{cookiecutter.camelcase_modelname}}PreTrainedModel,
)
{% endif -%}
# End.
# Below: " if is_tokenizers_available():"
# Replace with:
from .models.{{cookiecutter.lowercase_modelname}} import {{cookiecutter.camelcase_modelname}}TokenizerFast
# End.
# Below: " from .models.albert import ALBERT_PRETRAINED_CONFIG_ARCHIVE_MAP, AlbertConfig"
# Replace with:
from .models.{{cookiecutter.lowercase_modelname}} import {{cookiecutter.uppercase_modelname}}_PRETRAINED_CONFIG_ARCHIVE_MAP, {{cookiecutter.camelcase_modelname}}Config, {{cookiecutter.camelcase_modelname}}Tokenizer
# End.
# To replace in: "src/transformers/models/__init__.py"
# Below: "from . import ("
# Replace with:
{{cookiecutter.lowercase_modelname}},
# End.
# To replace in: "src/transformers/models/auto/configuration_auto.py"
# Below: "# Add configs here"
# Replace with:
("{{cookiecutter.lowercase_modelname}}", {{cookiecutter.camelcase_modelname}}Config),
# End.
# Below: "# Add archive maps here"
# Replace with:
{{cookiecutter.uppercase_modelname}}_PRETRAINED_CONFIG_ARCHIVE_MAP,
# End.
# Below: "from ..albert.configuration_albert import ALBERT_PRETRAINED_CONFIG_ARCHIVE_MAP, AlbertConfig",
# Replace with:
from ..{{cookiecutter.lowercase_modelname}}.configuration_{{cookiecutter.lowercase_modelname}} import {{cookiecutter.uppercase_modelname}}_PRETRAINED_CONFIG_ARCHIVE_MAP, {{cookiecutter.camelcase_modelname}}Config
# End.
# Below: "# Add full (and cased) model names here"
# Replace with:
("{{cookiecutter.lowercase_modelname}}", "{{cookiecutter.camelcase_modelname}}"),
# End.
# To replace in: "src/transformers/models/auto/modeling_auto.py" if generating PyTorch
# Below: "from .configuration_auto import ("
# Replace with:
{{cookiecutter.camelcase_modelname}}Config,
# End.
# Below: "# Add modeling imports here"
# Replace with:
{% if cookiecutter.is_encoder_decoder_model == "False" -%}
from ..{{cookiecutter.lowercase_modelname}}.modeling_{{cookiecutter.lowercase_modelname}} import (
{{cookiecutter.camelcase_modelname}}ForMaskedLM,
{{cookiecutter.camelcase_modelname}}ForCausalLM,
{{cookiecutter.camelcase_modelname}}ForMultipleChoice,
{{cookiecutter.camelcase_modelname}}ForQuestionAnswering,
{{cookiecutter.camelcase_modelname}}ForSequenceClassification,
{{cookiecutter.camelcase_modelname}}ForTokenClassification,
{{cookiecutter.camelcase_modelname}}Model,
)
{% else -%}
from ..{{cookiecutter.lowercase_modelname}}.modeling_{{cookiecutter.lowercase_modelname}} import (
{{cookiecutter.camelcase_modelname}}ForConditionalGeneration,
{{cookiecutter.camelcase_modelname}}ForCausalLM,
{{cookiecutter.camelcase_modelname}}ForQuestionAnswering,
{{cookiecutter.camelcase_modelname}}ForSequenceClassification,
{{cookiecutter.camelcase_modelname}}Model,
)
{% endif -%}
# End.
# Below: "# Base model mapping"
# Replace with:
({{cookiecutter.camelcase_modelname}}Config, {{cookiecutter.camelcase_modelname}}Model),
# End.
# Below: "# Model with LM heads mapping"
# Replace with:
{% if cookiecutter.is_encoder_decoder_model == "False" -%}
({{cookiecutter.camelcase_modelname}}Config, {{cookiecutter.camelcase_modelname}}ForMaskedLM),
{% else %}
({{cookiecutter.camelcase_modelname}}Config, {{cookiecutter.camelcase_modelname}}ForConditionalGeneration),
{% endif -%}
# End.
# Below: "# Model for Causal LM mapping"
# Replace with:
({{cookiecutter.camelcase_modelname}}Config, {{cookiecutter.camelcase_modelname}}ForCausalLM),
# End.
# Below: "# Model for Masked LM mapping"
# Replace with:
{% if cookiecutter.is_encoder_decoder_model == "False" -%}
({{cookiecutter.camelcase_modelname}}Config, {{cookiecutter.camelcase_modelname}}ForMaskedLM),
{% else -%}
{% endif -%}
# End.
# Below: "# Model for Sequence Classification mapping"
# Replace with:
({{cookiecutter.camelcase_modelname}}Config, {{cookiecutter.camelcase_modelname}}ForSequenceClassification),
# End.
# Below: "# Model for Question Answering mapping"
# Replace with:
({{cookiecutter.camelcase_modelname}}Config, {{cookiecutter.camelcase_modelname}}ForQuestionAnswering),
# End.
# Below: "# Model for Token Classification mapping"
# Replace with:
{% if cookiecutter.is_encoder_decoder_model == "False" -%}
({{cookiecutter.camelcase_modelname}}Config, {{cookiecutter.camelcase_modelname}}ForTokenClassification),
{% else -%}
{% endif -%}
# End.
# Below: "# Model for Multiple Choice mapping"
# Replace with:
{% if cookiecutter.is_encoder_decoder_model == "False" -%}
({{cookiecutter.camelcase_modelname}}Config, {{cookiecutter.camelcase_modelname}}ForMultipleChoice),
{% else -%}
{% endif -%}
# End.
# Below: "# Model for Seq2Seq Causal LM mapping"
# Replace with:
{% if cookiecutter.is_encoder_decoder_model == "False" -%}
{% else %}
({{cookiecutter.camelcase_modelname}}Config, {{cookiecutter.camelcase_modelname}}ForConditionalGeneration),
{% endif -%}
# End.
# To replace in: "src/transformers/models/auto/modeling_tf_auto.py" if generating TensorFlow
# Below: "from .configuration_auto import ("
# Replace with:
{{cookiecutter.camelcase_modelname}}Config,
# End.
# Below: "# Add modeling imports here"
# Replace with:
{% if cookiecutter.is_encoder_decoder_model == "False" -%}
from ..{{cookiecutter.lowercase_modelname}}.modeling_tf_{{cookiecutter.lowercase_modelname}} import (
TF{{cookiecutter.camelcase_modelname}}ForMaskedLM,
TF{{cookiecutter.camelcase_modelname}}ForCausalLM,
TF{{cookiecutter.camelcase_modelname}}ForMultipleChoice,
TF{{cookiecutter.camelcase_modelname}}ForQuestionAnswering,
TF{{cookiecutter.camelcase_modelname}}ForSequenceClassification,
TF{{cookiecutter.camelcase_modelname}}ForTokenClassification,
TF{{cookiecutter.camelcase_modelname}}Model,
)
{% else -%}
from ..{{cookiecutter.lowercase_modelname}}.modeling_tf_{{cookiecutter.lowercase_modelname}} import (
TF{{cookiecutter.camelcase_modelname}}ForConditionalGeneration,
TF{{cookiecutter.camelcase_modelname}}Model,
)
{% endif -%}
# End.
# Below: "# Base model mapping"
# Replace with:
({{cookiecutter.camelcase_modelname}}Config, TF{{cookiecutter.camelcase_modelname}}Model),
# End.
# Below: "# Model with LM heads mapping"
# Replace with:
{% if cookiecutter.is_encoder_decoder_model == "False" -%}
({{cookiecutter.camelcase_modelname}}Config, TF{{cookiecutter.camelcase_modelname}}ForMaskedLM),
{% else %}
({{cookiecutter.camelcase_modelname}}Config, TF{{cookiecutter.camelcase_modelname}}ForConditionalGeneration),
{% endif -%}
# End.
# Below: "# Model for Causal LM mapping"
# Replace with:
{% if cookiecutter.is_encoder_decoder_model == "False" -%}
({{cookiecutter.camelcase_modelname}}Config, TF{{cookiecutter.camelcase_modelname}}ForCausalLM),
{% else -%}
{% endif -%}
# End.
# Below: "# Model for Masked LM mapping"
# Replace with:
{% if cookiecutter.is_encoder_decoder_model == "False" -%}
({{cookiecutter.camelcase_modelname}}Config, TF{{cookiecutter.camelcase_modelname}}ForMaskedLM),
{% else -%}
{% endif -%}
# End.
# Below: "# Model for Sequence Classification mapping"
# Replace with:
{% if cookiecutter.is_encoder_decoder_model == "False" -%}
({{cookiecutter.camelcase_modelname}}Config, TF{{cookiecutter.camelcase_modelname}}ForSequenceClassification),
{% else -%}
{% endif -%}
# End.
# Below: "# Model for Question Answering mapping"
# Replace with:
{% if cookiecutter.is_encoder_decoder_model == "False" -%}
({{cookiecutter.camelcase_modelname}}Config, TF{{cookiecutter.camelcase_modelname}}ForQuestionAnswering),
{% else -%}
{% endif -%}
# End.
# Below: "# Model for Token Classification mapping"
# Replace with:
{% if cookiecutter.is_encoder_decoder_model == "False" -%}
({{cookiecutter.camelcase_modelname}}Config, TF{{cookiecutter.camelcase_modelname}}ForTokenClassification),
{% else -%}
{% endif -%}
# End.
# Below: "# Model for Multiple Choice mapping"
# Replace with:
{% if cookiecutter.is_encoder_decoder_model == "False" -%}
({{cookiecutter.camelcase_modelname}}Config, TF{{cookiecutter.camelcase_modelname}}ForMultipleChoice),
{% else -%}
{% endif -%}
# End.
# Below: "# Model for Seq2Seq Causal LM mapping"
# Replace with:
{% if cookiecutter.is_encoder_decoder_model == "False" -%}
{% else %}
({{cookiecutter.camelcase_modelname}}Config, TF{{cookiecutter.camelcase_modelname}}ForConditionalGeneration),
{% endif -%}
# End.
# To replace in: "utils/check_repo.py" if generating PyTorch
# Below: "models to ignore for model xxx mapping"
# Replace with:
{% if cookiecutter.is_encoder_decoder_model == "False" -%}
{% else -%}
"{{cookiecutter.camelcase_modelname}}Encoder",
"{{cookiecutter.camelcase_modelname}}Decoder",
"{{cookiecutter.camelcase_modelname}}DecoderWrapper",
{% endif -%}
# End.
# Below: "models to ignore for not tested"
# Replace with:
{% if cookiecutter.is_encoder_decoder_model == "False" -%}
{% else -%}
"{{cookiecutter.camelcase_modelname}}Encoder", # Building part of bigger (tested) model.
"{{cookiecutter.camelcase_modelname}}Decoder", # Building part of bigger (tested) model.
"{{cookiecutter.camelcase_modelname}}DecoderWrapper", # Building part of bigger (tested) model.
{% endif -%}
# End.
|
AdaMix/templates/adding_a_new_model/cookiecutter-template-{{cookiecutter.modelname}}/to_replace_{{cookiecutter.lowercase_modelname}}.py/0
|
{
"file_path": "AdaMix/templates/adding_a_new_model/cookiecutter-template-{{cookiecutter.modelname}}/to_replace_{{cookiecutter.lowercase_modelname}}.py",
"repo_id": "AdaMix",
"token_count": 6383
}
| 68 |
# coding=utf-8
# Copyright 2021 HuggingFace Inc.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import itertools
import random
import unittest
import numpy as np
from transformers import Speech2TextFeatureExtractor
from transformers.testing_utils import require_torch, require_torchaudio
from .test_sequence_feature_extraction_common import SequenceFeatureExtractionTestMixin
global_rng = random.Random()
def floats_list(shape, scale=1.0, rng=None, name=None):
"""Creates a random float32 tensor"""
if rng is None:
rng = global_rng
values = []
for batch_idx in range(shape[0]):
values.append([])
for _ in range(shape[1]):
values[-1].append(rng.random() * scale)
return values
@require_torch
@require_torchaudio
class Speech2TextFeatureExtractionTester(unittest.TestCase):
def __init__(
self,
parent,
batch_size=7,
min_seq_length=400,
max_seq_length=2000,
feature_size=24,
num_mel_bins=24,
padding_value=0.0,
sampling_rate=16_000,
return_attention_mask=True,
do_normalize=True,
):
self.parent = parent
self.batch_size = batch_size
self.min_seq_length = min_seq_length
self.max_seq_length = max_seq_length
self.seq_length_diff = (self.max_seq_length - self.min_seq_length) // (self.batch_size - 1)
self.feature_size = feature_size
self.num_mel_bins = num_mel_bins
self.padding_value = padding_value
self.sampling_rate = sampling_rate
self.return_attention_mask = return_attention_mask
self.do_normalize = do_normalize
def prepare_feat_extract_dict(self):
return {
"feature_size": self.feature_size,
"num_mel_bins": self.num_mel_bins,
"padding_value": self.padding_value,
"sampling_rate": self.sampling_rate,
"return_attention_mask": self.return_attention_mask,
"do_normalize": self.do_normalize,
}
def prepare_inputs_for_common(self, equal_length=False, numpify=False):
def _flatten(list_of_lists):
return list(itertools.chain(*list_of_lists))
if equal_length:
speech_inputs = [floats_list((self.max_seq_length, self.feature_size)) for _ in range(self.batch_size)]
else:
speech_inputs = [
floats_list((x, self.feature_size))
for x in range(self.min_seq_length, self.max_seq_length, self.seq_length_diff)
]
if numpify:
speech_inputs = [np.asarray(x) for x in speech_inputs]
return speech_inputs
@require_torch
@require_torchaudio
class Speech2TextFeatureExtractionTest(SequenceFeatureExtractionTestMixin, unittest.TestCase):
feature_extraction_class = Speech2TextFeatureExtractor
def setUp(self):
self.feat_extract_tester = Speech2TextFeatureExtractionTester(self)
def test_call(self):
# Tests that all call wrap to encode_plus and batch_encode_plus
feature_extractor = self.feature_extraction_class(**self.feat_extract_tester.prepare_feat_extract_dict())
# create three inputs of length 800, 1000, and 1200
speech_inputs = [floats_list((1, x))[0] for x in range(800, 1400, 200)]
np_speech_inputs = [np.asarray(speech_input) for speech_input in speech_inputs]
# Test feature size
input_features = feature_extractor(np_speech_inputs, padding=True, return_tensors="np").input_features
self.assertTrue(input_features.ndim == 3)
self.assertTrue(input_features.shape[-1] == feature_extractor.feature_size)
# Test not batched input
encoded_sequences_1 = feature_extractor(speech_inputs[0], return_tensors="np").input_features
encoded_sequences_2 = feature_extractor(np_speech_inputs[0], return_tensors="np").input_features
self.assertTrue(np.allclose(encoded_sequences_1, encoded_sequences_2, atol=1e-3))
# Test batched
encoded_sequences_1 = feature_extractor(speech_inputs, return_tensors="np").input_features
encoded_sequences_2 = feature_extractor(np_speech_inputs, return_tensors="np").input_features
for enc_seq_1, enc_seq_2 in zip(encoded_sequences_1, encoded_sequences_2):
self.assertTrue(np.allclose(enc_seq_1, enc_seq_2, atol=1e-3))
def test_cepstral_mean_and_variance_normalization(self):
feature_extractor = self.feature_extraction_class(**self.feat_extract_tester.prepare_feat_extract_dict())
speech_inputs = [floats_list((1, x))[0] for x in range(800, 1400, 200)]
inputs = feature_extractor(speech_inputs, padding=True, return_tensors="np", return_attention_mask=True)
input_features = inputs.input_features
attention_mask = inputs.attention_mask
fbank_feat_lengths = np.sum(attention_mask == 1, axis=1)
def _check_zero_mean_unit_variance(input_vector):
self.assertTrue(np.all(np.mean(input_vector, axis=0) < 1e-3))
self.assertTrue(np.all(np.abs(np.var(input_vector, axis=0) - 1) < 1e-3))
_check_zero_mean_unit_variance(input_features[0, : fbank_feat_lengths[0]])
_check_zero_mean_unit_variance(input_features[1, : fbank_feat_lengths[1]])
_check_zero_mean_unit_variance(input_features[2, : fbank_feat_lengths[2]])
|
AdaMix/tests/test_feature_extraction_speech_to_text.py/0
|
{
"file_path": "AdaMix/tests/test_feature_extraction_speech_to_text.py",
"repo_id": "AdaMix",
"token_count": 2436
}
| 69 |
# coding=utf-8
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import unittest
from transformers import is_torch_available
from transformers.testing_utils import require_torch, slow, torch_device
from .test_configuration_common import ConfigTester
from .test_generation_utils import GenerationTesterMixin
from .test_modeling_common import ModelTesterMixin, floats_tensor, ids_tensor, random_attention_mask
if is_torch_available():
import torch
from transformers import (
MODEL_FOR_PRETRAINING_MAPPING,
BertConfig,
BertForMaskedLM,
BertForMultipleChoice,
BertForNextSentencePrediction,
BertForPreTraining,
BertForQuestionAnswering,
BertForSequenceClassification,
BertForTokenClassification,
BertLMHeadModel,
BertModel,
)
from transformers.models.bert.modeling_bert import BERT_PRETRAINED_MODEL_ARCHIVE_LIST
class BertModelTester:
def __init__(
self,
parent,
batch_size=13,
seq_length=7,
is_training=True,
use_input_mask=True,
use_token_type_ids=True,
use_labels=True,
vocab_size=99,
hidden_size=32,
num_hidden_layers=5,
num_attention_heads=4,
intermediate_size=37,
hidden_act="gelu",
hidden_dropout_prob=0.1,
attention_probs_dropout_prob=0.1,
max_position_embeddings=512,
type_vocab_size=16,
type_sequence_label_size=2,
initializer_range=0.02,
num_labels=3,
num_choices=4,
scope=None,
):
self.parent = parent
self.batch_size = batch_size
self.seq_length = seq_length
self.is_training = is_training
self.use_input_mask = use_input_mask
self.use_token_type_ids = use_token_type_ids
self.use_labels = use_labels
self.vocab_size = vocab_size
self.hidden_size = hidden_size
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.intermediate_size = intermediate_size
self.hidden_act = hidden_act
self.hidden_dropout_prob = hidden_dropout_prob
self.attention_probs_dropout_prob = attention_probs_dropout_prob
self.max_position_embeddings = max_position_embeddings
self.type_vocab_size = type_vocab_size
self.type_sequence_label_size = type_sequence_label_size
self.initializer_range = initializer_range
self.num_labels = num_labels
self.num_choices = num_choices
self.scope = scope
def prepare_config_and_inputs(self):
input_ids = ids_tensor([self.batch_size, self.seq_length], self.vocab_size)
input_mask = None
if self.use_input_mask:
input_mask = random_attention_mask([self.batch_size, self.seq_length])
token_type_ids = None
if self.use_token_type_ids:
token_type_ids = ids_tensor([self.batch_size, self.seq_length], self.type_vocab_size)
sequence_labels = None
token_labels = None
choice_labels = None
if self.use_labels:
sequence_labels = ids_tensor([self.batch_size], self.type_sequence_label_size)
token_labels = ids_tensor([self.batch_size, self.seq_length], self.num_labels)
choice_labels = ids_tensor([self.batch_size], self.num_choices)
config = BertConfig(
vocab_size=self.vocab_size,
hidden_size=self.hidden_size,
num_hidden_layers=self.num_hidden_layers,
num_attention_heads=self.num_attention_heads,
intermediate_size=self.intermediate_size,
hidden_act=self.hidden_act,
hidden_dropout_prob=self.hidden_dropout_prob,
attention_probs_dropout_prob=self.attention_probs_dropout_prob,
max_position_embeddings=self.max_position_embeddings,
type_vocab_size=self.type_vocab_size,
is_decoder=False,
initializer_range=self.initializer_range,
)
return config, input_ids, token_type_ids, input_mask, sequence_labels, token_labels, choice_labels
def prepare_config_and_inputs_for_decoder(self):
(
config,
input_ids,
token_type_ids,
input_mask,
sequence_labels,
token_labels,
choice_labels,
) = self.prepare_config_and_inputs()
config.is_decoder = True
encoder_hidden_states = floats_tensor([self.batch_size, self.seq_length, self.hidden_size])
encoder_attention_mask = ids_tensor([self.batch_size, self.seq_length], vocab_size=2)
return (
config,
input_ids,
token_type_ids,
input_mask,
sequence_labels,
token_labels,
choice_labels,
encoder_hidden_states,
encoder_attention_mask,
)
def create_and_check_model(
self, config, input_ids, token_type_ids, input_mask, sequence_labels, token_labels, choice_labels
):
model = BertModel(config=config)
model.to(torch_device)
model.eval()
result = model(input_ids, attention_mask=input_mask, token_type_ids=token_type_ids)
result = model(input_ids, token_type_ids=token_type_ids)
result = model(input_ids)
self.parent.assertEqual(result.last_hidden_state.shape, (self.batch_size, self.seq_length, self.hidden_size))
self.parent.assertEqual(result.pooler_output.shape, (self.batch_size, self.hidden_size))
def create_and_check_model_as_decoder(
self,
config,
input_ids,
token_type_ids,
input_mask,
sequence_labels,
token_labels,
choice_labels,
encoder_hidden_states,
encoder_attention_mask,
):
config.add_cross_attention = True
model = BertModel(config)
model.to(torch_device)
model.eval()
result = model(
input_ids,
attention_mask=input_mask,
token_type_ids=token_type_ids,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
)
result = model(
input_ids,
attention_mask=input_mask,
token_type_ids=token_type_ids,
encoder_hidden_states=encoder_hidden_states,
)
result = model(input_ids, attention_mask=input_mask, token_type_ids=token_type_ids)
self.parent.assertEqual(result.last_hidden_state.shape, (self.batch_size, self.seq_length, self.hidden_size))
self.parent.assertEqual(result.pooler_output.shape, (self.batch_size, self.hidden_size))
def create_and_check_for_causal_lm(
self,
config,
input_ids,
token_type_ids,
input_mask,
sequence_labels,
token_labels,
choice_labels,
encoder_hidden_states,
encoder_attention_mask,
):
model = BertLMHeadModel(config=config)
model.to(torch_device)
model.eval()
result = model(input_ids, attention_mask=input_mask, token_type_ids=token_type_ids, labels=token_labels)
self.parent.assertEqual(result.logits.shape, (self.batch_size, self.seq_length, self.vocab_size))
def create_and_check_for_masked_lm(
self, config, input_ids, token_type_ids, input_mask, sequence_labels, token_labels, choice_labels
):
model = BertForMaskedLM(config=config)
model.to(torch_device)
model.eval()
result = model(input_ids, attention_mask=input_mask, token_type_ids=token_type_ids, labels=token_labels)
self.parent.assertEqual(result.logits.shape, (self.batch_size, self.seq_length, self.vocab_size))
def create_and_check_model_for_causal_lm_as_decoder(
self,
config,
input_ids,
token_type_ids,
input_mask,
sequence_labels,
token_labels,
choice_labels,
encoder_hidden_states,
encoder_attention_mask,
):
config.add_cross_attention = True
model = BertLMHeadModel(config=config)
model.to(torch_device)
model.eval()
result = model(
input_ids,
attention_mask=input_mask,
token_type_ids=token_type_ids,
labels=token_labels,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
)
result = model(
input_ids,
attention_mask=input_mask,
token_type_ids=token_type_ids,
labels=token_labels,
encoder_hidden_states=encoder_hidden_states,
)
self.parent.assertEqual(result.logits.shape, (self.batch_size, self.seq_length, self.vocab_size))
def create_and_check_decoder_model_past_large_inputs(
self,
config,
input_ids,
token_type_ids,
input_mask,
sequence_labels,
token_labels,
choice_labels,
encoder_hidden_states,
encoder_attention_mask,
):
config.is_decoder = True
config.add_cross_attention = True
model = BertLMHeadModel(config=config).to(torch_device).eval()
# first forward pass
outputs = model(
input_ids,
attention_mask=input_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
use_cache=True,
)
past_key_values = outputs.past_key_values
# create hypothetical multiple next token and extent to next_input_ids
next_tokens = ids_tensor((self.batch_size, 3), config.vocab_size)
next_mask = ids_tensor((self.batch_size, 3), vocab_size=2)
# append to next input_ids and
next_input_ids = torch.cat([input_ids, next_tokens], dim=-1)
next_attention_mask = torch.cat([input_mask, next_mask], dim=-1)
output_from_no_past = model(
next_input_ids,
attention_mask=next_attention_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
output_hidden_states=True,
)["hidden_states"][0]
output_from_past = model(
next_tokens,
attention_mask=next_attention_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
past_key_values=past_key_values,
output_hidden_states=True,
)["hidden_states"][0]
# select random slice
random_slice_idx = ids_tensor((1,), output_from_past.shape[-1]).item()
output_from_no_past_slice = output_from_no_past[:, -3:, random_slice_idx].detach()
output_from_past_slice = output_from_past[:, :, random_slice_idx].detach()
self.parent.assertTrue(output_from_past_slice.shape[1] == next_tokens.shape[1])
# test that outputs are equal for slice
self.parent.assertTrue(torch.allclose(output_from_past_slice, output_from_no_past_slice, atol=1e-3))
def create_and_check_for_next_sequence_prediction(
self, config, input_ids, token_type_ids, input_mask, sequence_labels, token_labels, choice_labels
):
model = BertForNextSentencePrediction(config=config)
model.to(torch_device)
model.eval()
result = model(
input_ids,
attention_mask=input_mask,
token_type_ids=token_type_ids,
labels=sequence_labels,
)
self.parent.assertEqual(result.logits.shape, (self.batch_size, 2))
def create_and_check_for_pretraining(
self, config, input_ids, token_type_ids, input_mask, sequence_labels, token_labels, choice_labels
):
model = BertForPreTraining(config=config)
model.to(torch_device)
model.eval()
result = model(
input_ids,
attention_mask=input_mask,
token_type_ids=token_type_ids,
labels=token_labels,
next_sentence_label=sequence_labels,
)
self.parent.assertEqual(result.prediction_logits.shape, (self.batch_size, self.seq_length, self.vocab_size))
self.parent.assertEqual(result.seq_relationship_logits.shape, (self.batch_size, 2))
def create_and_check_for_question_answering(
self, config, input_ids, token_type_ids, input_mask, sequence_labels, token_labels, choice_labels
):
model = BertForQuestionAnswering(config=config)
model.to(torch_device)
model.eval()
result = model(
input_ids,
attention_mask=input_mask,
token_type_ids=token_type_ids,
start_positions=sequence_labels,
end_positions=sequence_labels,
)
self.parent.assertEqual(result.start_logits.shape, (self.batch_size, self.seq_length))
self.parent.assertEqual(result.end_logits.shape, (self.batch_size, self.seq_length))
def create_and_check_for_sequence_classification(
self, config, input_ids, token_type_ids, input_mask, sequence_labels, token_labels, choice_labels
):
config.num_labels = self.num_labels
model = BertForSequenceClassification(config)
model.to(torch_device)
model.eval()
result = model(input_ids, attention_mask=input_mask, token_type_ids=token_type_ids, labels=sequence_labels)
self.parent.assertEqual(result.logits.shape, (self.batch_size, self.num_labels))
def create_and_check_for_token_classification(
self, config, input_ids, token_type_ids, input_mask, sequence_labels, token_labels, choice_labels
):
config.num_labels = self.num_labels
model = BertForTokenClassification(config=config)
model.to(torch_device)
model.eval()
result = model(input_ids, attention_mask=input_mask, token_type_ids=token_type_ids, labels=token_labels)
self.parent.assertEqual(result.logits.shape, (self.batch_size, self.seq_length, self.num_labels))
def create_and_check_for_multiple_choice(
self, config, input_ids, token_type_ids, input_mask, sequence_labels, token_labels, choice_labels
):
config.num_choices = self.num_choices
model = BertForMultipleChoice(config=config)
model.to(torch_device)
model.eval()
multiple_choice_inputs_ids = input_ids.unsqueeze(1).expand(-1, self.num_choices, -1).contiguous()
multiple_choice_token_type_ids = token_type_ids.unsqueeze(1).expand(-1, self.num_choices, -1).contiguous()
multiple_choice_input_mask = input_mask.unsqueeze(1).expand(-1, self.num_choices, -1).contiguous()
result = model(
multiple_choice_inputs_ids,
attention_mask=multiple_choice_input_mask,
token_type_ids=multiple_choice_token_type_ids,
labels=choice_labels,
)
self.parent.assertEqual(result.logits.shape, (self.batch_size, self.num_choices))
def prepare_config_and_inputs_for_common(self):
config_and_inputs = self.prepare_config_and_inputs()
(
config,
input_ids,
token_type_ids,
input_mask,
sequence_labels,
token_labels,
choice_labels,
) = config_and_inputs
inputs_dict = {"input_ids": input_ids, "token_type_ids": token_type_ids, "attention_mask": input_mask}
return config, inputs_dict
@require_torch
class BertModelTest(ModelTesterMixin, GenerationTesterMixin, unittest.TestCase):
all_model_classes = (
(
BertModel,
BertLMHeadModel,
BertForMaskedLM,
BertForMultipleChoice,
BertForNextSentencePrediction,
BertForPreTraining,
BertForQuestionAnswering,
BertForSequenceClassification,
BertForTokenClassification,
)
if is_torch_available()
else ()
)
all_generative_model_classes = (BertLMHeadModel,) if is_torch_available() else ()
# special case for ForPreTraining model
def _prepare_for_class(self, inputs_dict, model_class, return_labels=False):
inputs_dict = super()._prepare_for_class(inputs_dict, model_class, return_labels=return_labels)
if return_labels:
if model_class in MODEL_FOR_PRETRAINING_MAPPING.values():
inputs_dict["labels"] = torch.zeros(
(self.model_tester.batch_size, self.model_tester.seq_length), dtype=torch.long, device=torch_device
)
inputs_dict["next_sentence_label"] = torch.zeros(
self.model_tester.batch_size, dtype=torch.long, device=torch_device
)
return inputs_dict
def setUp(self):
self.model_tester = BertModelTester(self)
self.config_tester = ConfigTester(self, config_class=BertConfig, hidden_size=37)
def test_config(self):
self.config_tester.run_common_tests()
def test_model(self):
config_and_inputs = self.model_tester.prepare_config_and_inputs()
self.model_tester.create_and_check_model(*config_and_inputs)
def test_model_various_embeddings(self):
config_and_inputs = self.model_tester.prepare_config_and_inputs()
for type in ["absolute", "relative_key", "relative_key_query"]:
config_and_inputs[0].position_embedding_type = type
self.model_tester.create_and_check_model(*config_and_inputs)
def test_model_as_decoder(self):
config_and_inputs = self.model_tester.prepare_config_and_inputs_for_decoder()
self.model_tester.create_and_check_model_as_decoder(*config_and_inputs)
def test_model_as_decoder_with_default_input_mask(self):
# This regression test was failing with PyTorch < 1.3
(
config,
input_ids,
token_type_ids,
input_mask,
sequence_labels,
token_labels,
choice_labels,
encoder_hidden_states,
encoder_attention_mask,
) = self.model_tester.prepare_config_and_inputs_for_decoder()
input_mask = None
self.model_tester.create_and_check_model_as_decoder(
config,
input_ids,
token_type_ids,
input_mask,
sequence_labels,
token_labels,
choice_labels,
encoder_hidden_states,
encoder_attention_mask,
)
def test_for_causal_lm(self):
config_and_inputs = self.model_tester.prepare_config_and_inputs_for_decoder()
self.model_tester.create_and_check_for_causal_lm(*config_and_inputs)
def test_for_masked_lm(self):
config_and_inputs = self.model_tester.prepare_config_and_inputs()
self.model_tester.create_and_check_for_masked_lm(*config_and_inputs)
def test_for_causal_lm_decoder(self):
config_and_inputs = self.model_tester.prepare_config_and_inputs_for_decoder()
self.model_tester.create_and_check_model_for_causal_lm_as_decoder(*config_and_inputs)
def test_decoder_model_past_with_large_inputs(self):
config_and_inputs = self.model_tester.prepare_config_and_inputs_for_decoder()
self.model_tester.create_and_check_decoder_model_past_large_inputs(*config_and_inputs)
def test_for_multiple_choice(self):
config_and_inputs = self.model_tester.prepare_config_and_inputs()
self.model_tester.create_and_check_for_multiple_choice(*config_and_inputs)
def test_for_next_sequence_prediction(self):
config_and_inputs = self.model_tester.prepare_config_and_inputs()
self.model_tester.create_and_check_for_next_sequence_prediction(*config_and_inputs)
def test_for_pretraining(self):
config_and_inputs = self.model_tester.prepare_config_and_inputs()
self.model_tester.create_and_check_for_pretraining(*config_and_inputs)
def test_for_question_answering(self):
config_and_inputs = self.model_tester.prepare_config_and_inputs()
self.model_tester.create_and_check_for_question_answering(*config_and_inputs)
def test_for_sequence_classification(self):
config_and_inputs = self.model_tester.prepare_config_and_inputs()
self.model_tester.create_and_check_for_sequence_classification(*config_and_inputs)
def test_for_token_classification(self):
config_and_inputs = self.model_tester.prepare_config_and_inputs()
self.model_tester.create_and_check_for_token_classification(*config_and_inputs)
@slow
def test_model_from_pretrained(self):
for model_name in BERT_PRETRAINED_MODEL_ARCHIVE_LIST[:1]:
model = BertModel.from_pretrained(model_name)
self.assertIsNotNone(model)
@require_torch
class BertModelIntegrationTest(unittest.TestCase):
@slow
def test_inference_no_head_absolute_embedding(self):
model = BertModel.from_pretrained("bert-base-uncased")
input_ids = torch.tensor([[0, 345, 232, 328, 740, 140, 1695, 69, 6078, 1588, 2]])
attention_mask = torch.tensor([[0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1]])
output = model(input_ids, attention_mask=attention_mask)[0]
expected_shape = torch.Size((1, 11, 768))
self.assertEqual(output.shape, expected_shape)
expected_slice = torch.tensor([[[0.4249, 0.1008, 0.7531], [0.3771, 0.1188, 0.7467], [0.4152, 0.1098, 0.7108]]])
self.assertTrue(torch.allclose(output[:, 1:4, 1:4], expected_slice, atol=1e-4))
@slow
def test_inference_no_head_relative_embedding_key(self):
model = BertModel.from_pretrained("zhiheng-huang/bert-base-uncased-embedding-relative-key")
input_ids = torch.tensor([[0, 345, 232, 328, 740, 140, 1695, 69, 6078, 1588, 2]])
attention_mask = torch.tensor([[0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1]])
output = model(input_ids, attention_mask=attention_mask)[0]
expected_shape = torch.Size((1, 11, 768))
self.assertEqual(output.shape, expected_shape)
expected_slice = torch.tensor(
[[[0.0756, 0.3142, -0.5128], [0.3761, 0.3462, -0.5477], [0.2052, 0.3760, -0.1240]]]
)
self.assertTrue(torch.allclose(output[:, 1:4, 1:4], expected_slice, atol=1e-4))
@slow
def test_inference_no_head_relative_embedding_key_query(self):
model = BertModel.from_pretrained("zhiheng-huang/bert-base-uncased-embedding-relative-key-query")
input_ids = torch.tensor([[0, 345, 232, 328, 740, 140, 1695, 69, 6078, 1588, 2]])
attention_mask = torch.tensor([[0, 1, 1, 1, 1, 1, 1, 1, 1, 1, 1]])
output = model(input_ids, attention_mask=attention_mask)[0]
expected_shape = torch.Size((1, 11, 768))
self.assertEqual(output.shape, expected_shape)
expected_slice = torch.tensor(
[[[0.6496, 0.3784, 0.8203], [0.8148, 0.5656, 0.2636], [-0.0681, 0.5597, 0.7045]]]
)
self.assertTrue(torch.allclose(output[:, 1:4, 1:4], expected_slice, atol=1e-4))
|
AdaMix/tests/test_modeling_bert.py/0
|
{
"file_path": "AdaMix/tests/test_modeling_bert.py",
"repo_id": "AdaMix",
"token_count": 10939
}
| 70 |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import unittest
import numpy as np
from transformers import BertConfig, is_flax_available
from transformers.testing_utils import require_flax, slow
from .test_modeling_flax_common import FlaxModelTesterMixin, ids_tensor, random_attention_mask
if is_flax_available():
from transformers.models.bert.modeling_flax_bert import FlaxBertForMaskedLM, FlaxBertModel
class FlaxBertModelTester(unittest.TestCase):
def __init__(
self,
parent,
batch_size=13,
seq_length=7,
is_training=True,
use_attention_mask=True,
use_token_type_ids=True,
use_labels=True,
vocab_size=99,
hidden_size=32,
num_hidden_layers=5,
num_attention_heads=4,
intermediate_size=37,
hidden_act="gelu",
hidden_dropout_prob=0.1,
attention_probs_dropout_prob=0.1,
max_position_embeddings=512,
type_vocab_size=16,
type_sequence_label_size=2,
initializer_range=0.02,
):
self.parent = parent
self.batch_size = batch_size
self.seq_length = seq_length
self.is_training = is_training
self.use_attention_mask = use_attention_mask
self.use_token_type_ids = use_token_type_ids
self.use_labels = use_labels
self.vocab_size = vocab_size
self.hidden_size = hidden_size
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.intermediate_size = intermediate_size
self.hidden_act = hidden_act
self.hidden_dropout_prob = hidden_dropout_prob
self.attention_probs_dropout_prob = attention_probs_dropout_prob
self.max_position_embeddings = max_position_embeddings
self.type_vocab_size = type_vocab_size
self.type_sequence_label_size = type_sequence_label_size
self.initializer_range = initializer_range
def prepare_config_and_inputs(self):
input_ids = ids_tensor([self.batch_size, self.seq_length], self.vocab_size)
attention_mask = None
if self.use_attention_mask:
attention_mask = random_attention_mask([self.batch_size, self.seq_length])
token_type_ids = None
if self.use_token_type_ids:
token_type_ids = ids_tensor([self.batch_size, self.seq_length], self.type_vocab_size)
config = BertConfig(
vocab_size=self.vocab_size,
hidden_size=self.hidden_size,
num_hidden_layers=self.num_hidden_layers,
num_attention_heads=self.num_attention_heads,
intermediate_size=self.intermediate_size,
hidden_act=self.hidden_act,
hidden_dropout_prob=self.hidden_dropout_prob,
attention_probs_dropout_prob=self.attention_probs_dropout_prob,
max_position_embeddings=self.max_position_embeddings,
type_vocab_size=self.type_vocab_size,
is_decoder=False,
initializer_range=self.initializer_range,
)
return config, input_ids, token_type_ids, attention_mask
def prepare_config_and_inputs_for_common(self):
config_and_inputs = self.prepare_config_and_inputs()
config, input_ids, token_type_ids, attention_mask = config_and_inputs
inputs_dict = {"input_ids": input_ids, "token_type_ids": token_type_ids, "attention_mask": attention_mask}
return config, inputs_dict
@require_flax
class FlaxBertModelTest(FlaxModelTesterMixin, unittest.TestCase):
all_model_classes = (FlaxBertModel, FlaxBertForMaskedLM) if is_flax_available() else ()
def setUp(self):
self.model_tester = FlaxBertModelTester(self)
@slow
def test_model_from_pretrained(self):
for model_class_name in self.all_model_classes:
model = model_class_name.from_pretrained("bert-base-cased")
outputs = model(np.ones((1, 1)))
self.assertIsNotNone(outputs)
|
AdaMix/tests/test_modeling_flax_bert.py/0
|
{
"file_path": "AdaMix/tests/test_modeling_flax_bert.py",
"repo_id": "AdaMix",
"token_count": 1942
}
| 71 |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import unittest
from transformers import is_torch_available
from transformers.testing_utils import require_sentencepiece, require_tokenizers, require_torch, slow, torch_device
if is_torch_available():
from transformers import AutoModelForSeq2SeqLM, AutoTokenizer
@require_torch
@require_sentencepiece
@require_tokenizers
class MT5IntegrationTest(unittest.TestCase):
@slow
def test_small_integration_test(self):
"""
For comparision run:
>>> import t5 # pip install t5==0.7.1
>>> from t5.data.sentencepiece_vocabulary import SentencePieceVocabulary
>>> path_to_mtf_small_mt5_checkpoint = '<fill_in>'
>>> path_to_mtf_small_mt5_spm_model_path = '<fill_in>'
>>> t5_model = t5.models.MtfModel(model_dir=path_to_mtf_small_mt5_checkpoint, batch_size=1, tpu=None)
>>> vocab = SentencePieceVocabulary(path_to_mtf_small_mt5_spm_model_path)
>>> score = t5_model.score(inputs=["Hello there"], targets=["Hi I am"], vocabulary=vocab)
"""
model = AutoModelForSeq2SeqLM.from_pretrained("google/mt5-small", return_dict=True).to(torch_device)
tokenizer = AutoTokenizer.from_pretrained("google/mt5-small")
input_ids = tokenizer("Hello there", return_tensors="pt").input_ids
labels = tokenizer("Hi I am", return_tensors="pt").input_ids
loss = model(input_ids.to(torch_device), labels=labels.to(torch_device)).loss
mtf_score = -(labels.shape[-1] * loss.item())
EXPECTED_SCORE = -84.9127
self.assertTrue(abs(mtf_score - EXPECTED_SCORE) < 1e-4)
|
AdaMix/tests/test_modeling_mt5.py/0
|
{
"file_path": "AdaMix/tests/test_modeling_mt5.py",
"repo_id": "AdaMix",
"token_count": 817
}
| 72 |
# coding=utf-8
# Copyright 2021 The HuggingFace Inc. team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import tempfile
import unittest
from transformers import AutoTokenizer, MBartConfig, is_tf_available
from transformers.file_utils import cached_property
from transformers.testing_utils import require_sentencepiece, require_tf, require_tokenizers, slow
from .test_configuration_common import ConfigTester
from .test_modeling_tf_common import TFModelTesterMixin, ids_tensor
if is_tf_available():
import tensorflow as tf
from transformers import TFAutoModelForSeq2SeqLM, TFMBartForConditionalGeneration, TFMBartModel
@require_tf
class TFMBartModelTester:
config_cls = MBartConfig
config_updates = {}
hidden_act = "gelu"
def __init__(
self,
parent,
batch_size=13,
seq_length=7,
is_training=True,
use_labels=False,
vocab_size=99,
hidden_size=32,
num_hidden_layers=5,
num_attention_heads=4,
intermediate_size=37,
hidden_dropout_prob=0.1,
attention_probs_dropout_prob=0.1,
max_position_embeddings=20,
eos_token_id=2,
pad_token_id=1,
bos_token_id=0,
):
self.parent = parent
self.batch_size = batch_size
self.seq_length = seq_length
self.is_training = is_training
self.use_labels = use_labels
self.vocab_size = vocab_size
self.hidden_size = hidden_size
self.num_hidden_layers = num_hidden_layers
self.num_attention_heads = num_attention_heads
self.intermediate_size = intermediate_size
self.hidden_dropout_prob = hidden_dropout_prob
self.attention_probs_dropout_prob = attention_probs_dropout_prob
self.max_position_embeddings = max_position_embeddings
self.eos_token_id = eos_token_id
self.pad_token_id = pad_token_id
self.bos_token_id = bos_token_id
def prepare_config_and_inputs_for_common(self):
input_ids = ids_tensor([self.batch_size, self.seq_length - 1], self.vocab_size)
eos_tensor = tf.expand_dims(tf.constant([self.eos_token_id] * self.batch_size), 1)
input_ids = tf.concat([input_ids, eos_tensor], axis=1)
decoder_input_ids = ids_tensor([self.batch_size, self.seq_length], self.vocab_size)
config = self.config_cls(
vocab_size=self.vocab_size,
d_model=self.hidden_size,
encoder_layers=self.num_hidden_layers,
decoder_layers=self.num_hidden_layers,
encoder_attention_heads=self.num_attention_heads,
decoder_attention_heads=self.num_attention_heads,
encoder_ffn_dim=self.intermediate_size,
decoder_ffn_dim=self.intermediate_size,
dropout=self.hidden_dropout_prob,
attention_dropout=self.attention_probs_dropout_prob,
max_position_embeddings=self.max_position_embeddings,
eos_token_ids=[2],
bos_token_id=self.bos_token_id,
pad_token_id=self.pad_token_id,
decoder_start_token_id=self.pad_token_id,
**self.config_updates,
)
inputs_dict = prepare_mbart_inputs_dict(config, input_ids, decoder_input_ids)
return config, inputs_dict
def check_decoder_model_past_large_inputs(self, config, inputs_dict):
model = TFMBartModel(config=config).get_decoder()
input_ids = inputs_dict["input_ids"]
input_ids = input_ids[:1, :]
attention_mask = inputs_dict["attention_mask"][:1, :]
head_mask = inputs_dict["head_mask"]
self.batch_size = 1
# first forward pass
outputs = model(input_ids, attention_mask=attention_mask, head_mask=head_mask, use_cache=True)
output, past_key_values = outputs.to_tuple()
past_key_values = past_key_values[1]
def test_compile_tf_model(self):
config, inputs_dict = self.model_tester.prepare_config_and_inputs_for_common()
optimizer = tf.keras.optimizers.Adam(learning_rate=3e-5, epsilon=1e-08, clipnorm=1.0)
loss = tf.keras.losses.SparseCategoricalCrossentropy(from_logits=True)
metric = tf.keras.metrics.SparseCategoricalAccuracy("accuracy")
model_class = self.all_generative_model_classes[0]
input_ids = {
"decoder_input_ids": tf.keras.Input(batch_shape=(2, 2000), name="decoder_input_ids", dtype="int32"),
"input_ids": tf.keras.Input(batch_shape=(2, 2000), name="input_ids", dtype="int32"),
}
# Prepare our model
model = model_class(config)
model(self._prepare_for_class(inputs_dict, model_class)) # Model must be called before saving.
# Let's load it from the disk to be sure we can use pretrained weights
with tempfile.TemporaryDirectory() as tmpdirname:
model.save_pretrained(tmpdirname)
model = model_class.from_pretrained(tmpdirname)
outputs_dict = model(input_ids)
hidden_states = outputs_dict[0]
# Add a dense layer on top to test integration with other keras modules
outputs = tf.keras.layers.Dense(2, activation="softmax", name="outputs")(hidden_states)
# Compile extended model
extended_model = tf.keras.Model(inputs=[input_ids], outputs=[outputs])
extended_model.compile(optimizer=optimizer, loss=loss, metrics=[metric])
def prepare_mbart_inputs_dict(
config,
input_ids,
decoder_input_ids,
attention_mask=None,
decoder_attention_mask=None,
head_mask=None,
decoder_head_mask=None,
):
if attention_mask is None:
attention_mask = tf.cast(tf.math.not_equal(input_ids, config.pad_token_id), tf.int8)
if decoder_attention_mask is None:
decoder_attention_mask = tf.concat(
[
tf.ones(decoder_input_ids[:, :1].shape, dtype=tf.int8),
tf.cast(tf.math.not_equal(decoder_input_ids[:, 1:], config.pad_token_id), tf.int8),
],
axis=-1,
)
if head_mask is None:
head_mask = tf.ones((config.encoder_layers, config.encoder_attention_heads))
if decoder_head_mask is None:
decoder_head_mask = tf.ones((config.decoder_layers, config.decoder_attention_heads))
return {
"input_ids": input_ids,
"decoder_input_ids": decoder_input_ids,
"attention_mask": attention_mask,
"decoder_attention_mask": decoder_attention_mask,
"head_mask": head_mask,
"decoder_head_mask": head_mask,
}
@require_tf
class TFMBartModelTest(TFModelTesterMixin, unittest.TestCase):
all_model_classes = (TFMBartForConditionalGeneration, TFMBartModel) if is_tf_available() else ()
all_generative_model_classes = (TFMBartForConditionalGeneration,) if is_tf_available() else ()
is_encoder_decoder = True
test_pruning = False
test_onnx = False
def setUp(self):
self.model_tester = TFMBartModelTester(self)
self.config_tester = ConfigTester(self, config_class=MBartConfig)
def test_config(self):
self.config_tester.run_common_tests()
def test_decoder_model_past_large_inputs(self):
config_and_inputs = self.model_tester.prepare_config_and_inputs_for_common()
self.model_tester.check_decoder_model_past_large_inputs(*config_and_inputs)
def test_model_common_attributes(self):
config, inputs_dict = self.model_tester.prepare_config_and_inputs_for_common()
for model_class in self.all_model_classes:
model = model_class(config)
assert isinstance(model.get_input_embeddings(), tf.keras.layers.Layer)
if model_class in self.all_generative_model_classes:
x = model.get_output_embeddings()
assert isinstance(x, tf.keras.layers.Layer)
name = model.get_bias()
assert isinstance(name, dict)
for k, v in name.items():
assert isinstance(v, tf.Variable)
else:
x = model.get_output_embeddings()
assert x is None
name = model.get_bias()
assert name is None
def test_resize_token_embeddings(self):
config, inputs_dict = self.model_tester.prepare_config_and_inputs_for_common()
def _get_word_embedding_weight(model, embedding_layer):
if hasattr(embedding_layer, "weight"):
return embedding_layer.weight
else:
# Here we build the word embeddings weights if not exists.
# And then we retry to get the attribute once built.
model(model.dummy_inputs)
if hasattr(embedding_layer, "weight"):
return embedding_layer.weight
else:
return None
for model_class in self.all_model_classes:
for size in [config.vocab_size - 10, config.vocab_size + 10, None]:
# build the embeddings
model = model_class(config=config)
old_input_embeddings = _get_word_embedding_weight(model, model.get_input_embeddings())
old_output_embeddings = _get_word_embedding_weight(model, model.get_output_embeddings())
old_final_logits_bias = model.get_bias()
# reshape the embeddings
model.resize_token_embeddings(size)
new_input_embeddings = _get_word_embedding_weight(model, model.get_input_embeddings())
new_output_embeddings = _get_word_embedding_weight(model, model.get_output_embeddings())
new_final_logits_bias = model.get_bias()
# check that the resized embeddings size matches the desired size.
assert_size = size if size is not None else config.vocab_size
self.assertEqual(new_input_embeddings.shape[0], assert_size)
# check that weights remain the same after resizing
models_equal = True
for p1, p2 in zip(old_input_embeddings.value(), new_input_embeddings.value()):
if tf.math.reduce_sum(tf.math.abs(p1 - p2)) > 0:
models_equal = False
self.assertTrue(models_equal)
if old_output_embeddings is not None and new_output_embeddings is not None:
self.assertEqual(new_output_embeddings.shape[0], assert_size)
models_equal = True
for p1, p2 in zip(old_output_embeddings.value(), new_output_embeddings.value()):
if tf.math.reduce_sum(tf.math.abs(p1 - p2)) > 0:
models_equal = False
self.assertTrue(models_equal)
if old_final_logits_bias is not None and new_final_logits_bias is not None:
old_final_logits_bias = old_final_logits_bias["final_logits_bias"]
new_final_logits_bias = new_final_logits_bias["final_logits_bias"]
self.assertEqual(new_final_logits_bias.shape[0], 1)
self.assertEqual(new_final_logits_bias.shape[1], assert_size)
models_equal = True
for old, new in zip(old_final_logits_bias.value(), new_final_logits_bias.value()):
for p1, p2 in zip(old, new):
if tf.math.reduce_sum(tf.math.abs(p1 - p2)) > 0:
models_equal = False
self.assertTrue(models_equal)
def test_saved_model_creation(self):
# This test is too long (>30sec) and makes fail the CI
pass
def _assert_tensors_equal(a, b, atol=1e-12, prefix=""):
"""If tensors not close, or a and b arent both tensors, raise a nice Assertion error."""
if a is None and b is None:
return True
try:
if tf.debugging.assert_near(a, b, atol=atol):
return True
raise
except Exception:
msg = "{} != {}".format(a, b)
if prefix:
msg = prefix + ": " + msg
raise AssertionError(msg)
def _long_tensor(tok_lst):
return tf.constant(tok_lst, dtype=tf.int32)
TOLERANCE = 1e-4
@require_sentencepiece
@require_tokenizers
@require_tf
class TFMBartModelIntegrationTest(unittest.TestCase):
src_text = [
" UN Chief Says There Is No Military Solution in Syria",
]
expected_text = [
"Şeful ONU declară că nu există o soluţie militară în Siria",
]
model_name = "facebook/mbart-large-en-ro"
@cached_property
def tokenizer(self):
return AutoTokenizer.from_pretrained(self.model_name)
@cached_property
def model(self):
model = TFAutoModelForSeq2SeqLM.from_pretrained(self.model_name)
return model
def _assert_generated_batch_equal_expected(self, **tokenizer_kwargs):
generated_words = self.translate_src_text(**tokenizer_kwargs)
self.assertListEqual(self.expected_text, generated_words)
def translate_src_text(self, **tokenizer_kwargs):
model_inputs = self.tokenizer(self.src_text, **tokenizer_kwargs, return_tensors="tf")
generated_ids = self.model.generate(
model_inputs.input_ids, attention_mask=model_inputs.attention_mask, num_beams=2
)
generated_words = self.tokenizer.batch_decode(generated_ids, skip_special_tokens=True)
return generated_words
@slow
def test_batch_generation_en_ro(self):
self._assert_generated_batch_equal_expected()
|
AdaMix/tests/test_modeling_tf_mbart.py/0
|
{
"file_path": "AdaMix/tests/test_modeling_tf_mbart.py",
"repo_id": "AdaMix",
"token_count": 6424
}
| 73 |
# coding=utf-8
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import unittest
from transformers import is_torch_available
from transformers.testing_utils import require_torch, slow, torch_device
from .test_configuration_common import ConfigTester
from .test_generation_utils import GenerationTesterMixin
from .test_modeling_common import ModelTesterMixin, ids_tensor, random_attention_mask
if is_torch_available():
import torch
from transformers import (
XLMConfig,
XLMForMultipleChoice,
XLMForQuestionAnswering,
XLMForQuestionAnsweringSimple,
XLMForSequenceClassification,
XLMForTokenClassification,
XLMModel,
XLMWithLMHeadModel,
)
from transformers.models.xlm.modeling_xlm import XLM_PRETRAINED_MODEL_ARCHIVE_LIST
class XLMModelTester:
def __init__(
self,
parent,
):
self.parent = parent
self.batch_size = 13
self.seq_length = 7
self.is_training = True
self.use_input_lengths = True
self.use_token_type_ids = True
self.use_labels = True
self.gelu_activation = True
self.sinusoidal_embeddings = False
self.causal = False
self.asm = False
self.n_langs = 2
self.vocab_size = 99
self.n_special = 0
self.hidden_size = 32
self.num_hidden_layers = 5
self.num_attention_heads = 4
self.hidden_dropout_prob = 0.1
self.attention_probs_dropout_prob = 0.1
self.max_position_embeddings = 512
self.type_sequence_label_size = 2
self.initializer_range = 0.02
self.num_labels = 2
self.num_choices = 4
self.summary_type = "last"
self.use_proj = True
self.scope = None
self.bos_token_id = 0
def prepare_config_and_inputs(self):
input_ids = ids_tensor([self.batch_size, self.seq_length], self.vocab_size)
input_mask = random_attention_mask([self.batch_size, self.seq_length])
input_lengths = None
if self.use_input_lengths:
input_lengths = (
ids_tensor([self.batch_size], vocab_size=2) + self.seq_length - 2
) # small variation of seq_length
token_type_ids = None
if self.use_token_type_ids:
token_type_ids = ids_tensor([self.batch_size, self.seq_length], self.n_langs)
sequence_labels = None
token_labels = None
is_impossible_labels = None
if self.use_labels:
sequence_labels = ids_tensor([self.batch_size], self.type_sequence_label_size)
token_labels = ids_tensor([self.batch_size, self.seq_length], self.num_labels)
is_impossible_labels = ids_tensor([self.batch_size], 2).float()
choice_labels = ids_tensor([self.batch_size], self.num_choices)
config = XLMConfig(
vocab_size=self.vocab_size,
n_special=self.n_special,
emb_dim=self.hidden_size,
n_layers=self.num_hidden_layers,
n_heads=self.num_attention_heads,
dropout=self.hidden_dropout_prob,
attention_dropout=self.attention_probs_dropout_prob,
gelu_activation=self.gelu_activation,
sinusoidal_embeddings=self.sinusoidal_embeddings,
asm=self.asm,
causal=self.causal,
n_langs=self.n_langs,
max_position_embeddings=self.max_position_embeddings,
initializer_range=self.initializer_range,
summary_type=self.summary_type,
use_proj=self.use_proj,
num_labels=self.num_labels,
bos_token_id=self.bos_token_id,
)
return (
config,
input_ids,
token_type_ids,
input_lengths,
sequence_labels,
token_labels,
is_impossible_labels,
choice_labels,
input_mask,
)
def create_and_check_xlm_model(
self,
config,
input_ids,
token_type_ids,
input_lengths,
sequence_labels,
token_labels,
is_impossible_labels,
choice_labels,
input_mask,
):
model = XLMModel(config=config)
model.to(torch_device)
model.eval()
result = model(input_ids, lengths=input_lengths, langs=token_type_ids)
result = model(input_ids, langs=token_type_ids)
result = model(input_ids)
self.parent.assertEqual(result.last_hidden_state.shape, (self.batch_size, self.seq_length, self.hidden_size))
def create_and_check_xlm_lm_head(
self,
config,
input_ids,
token_type_ids,
input_lengths,
sequence_labels,
token_labels,
is_impossible_labels,
choice_labels,
input_mask,
):
model = XLMWithLMHeadModel(config)
model.to(torch_device)
model.eval()
result = model(input_ids, token_type_ids=token_type_ids, labels=token_labels)
self.parent.assertEqual(result.loss.shape, ())
self.parent.assertEqual(result.logits.shape, (self.batch_size, self.seq_length, self.vocab_size))
def create_and_check_xlm_simple_qa(
self,
config,
input_ids,
token_type_ids,
input_lengths,
sequence_labels,
token_labels,
is_impossible_labels,
choice_labels,
input_mask,
):
model = XLMForQuestionAnsweringSimple(config)
model.to(torch_device)
model.eval()
outputs = model(input_ids)
outputs = model(input_ids, start_positions=sequence_labels, end_positions=sequence_labels)
result = outputs
self.parent.assertEqual(result.start_logits.shape, (self.batch_size, self.seq_length))
self.parent.assertEqual(result.end_logits.shape, (self.batch_size, self.seq_length))
def create_and_check_xlm_qa(
self,
config,
input_ids,
token_type_ids,
input_lengths,
sequence_labels,
token_labels,
is_impossible_labels,
choice_labels,
input_mask,
):
model = XLMForQuestionAnswering(config)
model.to(torch_device)
model.eval()
result = model(input_ids)
result_with_labels = model(
input_ids,
start_positions=sequence_labels,
end_positions=sequence_labels,
cls_index=sequence_labels,
is_impossible=is_impossible_labels,
p_mask=input_mask,
)
result_with_labels = model(
input_ids,
start_positions=sequence_labels,
end_positions=sequence_labels,
cls_index=sequence_labels,
is_impossible=is_impossible_labels,
)
(total_loss,) = result_with_labels.to_tuple()
result_with_labels = model(input_ids, start_positions=sequence_labels, end_positions=sequence_labels)
(total_loss,) = result_with_labels.to_tuple()
self.parent.assertEqual(result_with_labels.loss.shape, ())
self.parent.assertEqual(result.start_top_log_probs.shape, (self.batch_size, model.config.start_n_top))
self.parent.assertEqual(result.start_top_index.shape, (self.batch_size, model.config.start_n_top))
self.parent.assertEqual(
result.end_top_log_probs.shape, (self.batch_size, model.config.start_n_top * model.config.end_n_top)
)
self.parent.assertEqual(
result.end_top_index.shape, (self.batch_size, model.config.start_n_top * model.config.end_n_top)
)
self.parent.assertEqual(result.cls_logits.shape, (self.batch_size,))
def create_and_check_xlm_sequence_classif(
self,
config,
input_ids,
token_type_ids,
input_lengths,
sequence_labels,
token_labels,
is_impossible_labels,
choice_labels,
input_mask,
):
model = XLMForSequenceClassification(config)
model.to(torch_device)
model.eval()
result = model(input_ids)
result = model(input_ids, labels=sequence_labels)
self.parent.assertEqual(result.loss.shape, ())
self.parent.assertEqual(result.logits.shape, (self.batch_size, self.type_sequence_label_size))
def create_and_check_xlm_token_classif(
self,
config,
input_ids,
token_type_ids,
input_lengths,
sequence_labels,
token_labels,
is_impossible_labels,
choice_labels,
input_mask,
):
config.num_labels = self.num_labels
model = XLMForTokenClassification(config)
model.to(torch_device)
model.eval()
result = model(input_ids, attention_mask=input_mask, labels=token_labels)
self.parent.assertEqual(result.logits.shape, (self.batch_size, self.seq_length, self.num_labels))
def create_and_check_xlm_for_multiple_choice(
self,
config,
input_ids,
token_type_ids,
input_lengths,
sequence_labels,
token_labels,
is_impossible_labels,
choice_labels,
input_mask,
):
config.num_choices = self.num_choices
model = XLMForMultipleChoice(config=config)
model.to(torch_device)
model.eval()
multiple_choice_inputs_ids = input_ids.unsqueeze(1).expand(-1, self.num_choices, -1).contiguous()
multiple_choice_token_type_ids = token_type_ids.unsqueeze(1).expand(-1, self.num_choices, -1).contiguous()
multiple_choice_input_mask = input_mask.unsqueeze(1).expand(-1, self.num_choices, -1).contiguous()
result = model(
multiple_choice_inputs_ids,
attention_mask=multiple_choice_input_mask,
token_type_ids=multiple_choice_token_type_ids,
labels=choice_labels,
)
self.parent.assertEqual(result.logits.shape, (self.batch_size, self.num_choices))
def prepare_config_and_inputs_for_common(self):
config_and_inputs = self.prepare_config_and_inputs()
(
config,
input_ids,
token_type_ids,
input_lengths,
sequence_labels,
token_labels,
is_impossible_labels,
choice_labels,
input_mask,
) = config_and_inputs
inputs_dict = {"input_ids": input_ids, "token_type_ids": token_type_ids, "lengths": input_lengths}
return config, inputs_dict
@require_torch
class XLMModelTest(ModelTesterMixin, GenerationTesterMixin, unittest.TestCase):
all_model_classes = (
(
XLMModel,
XLMWithLMHeadModel,
XLMForQuestionAnswering,
XLMForSequenceClassification,
XLMForQuestionAnsweringSimple,
XLMForTokenClassification,
XLMForMultipleChoice,
)
if is_torch_available()
else ()
)
all_generative_model_classes = (
(XLMWithLMHeadModel,) if is_torch_available() else ()
) # TODO (PVP): Check other models whether language generation is also applicable
# XLM has 2 QA models -> need to manually set the correct labels for one of them here
def _prepare_for_class(self, inputs_dict, model_class, return_labels=False):
inputs_dict = super()._prepare_for_class(inputs_dict, model_class, return_labels=return_labels)
if return_labels:
if model_class.__name__ == "XLMForQuestionAnswering":
inputs_dict["start_positions"] = torch.zeros(
self.model_tester.batch_size, dtype=torch.long, device=torch_device
)
inputs_dict["end_positions"] = torch.zeros(
self.model_tester.batch_size, dtype=torch.long, device=torch_device
)
return inputs_dict
def setUp(self):
self.model_tester = XLMModelTester(self)
self.config_tester = ConfigTester(self, config_class=XLMConfig, emb_dim=37)
def test_config(self):
self.config_tester.run_common_tests()
def test_xlm_model(self):
config_and_inputs = self.model_tester.prepare_config_and_inputs()
self.model_tester.create_and_check_xlm_model(*config_and_inputs)
def test_xlm_lm_head(self):
config_and_inputs = self.model_tester.prepare_config_and_inputs()
self.model_tester.create_and_check_xlm_lm_head(*config_and_inputs)
def test_xlm_simple_qa(self):
config_and_inputs = self.model_tester.prepare_config_and_inputs()
self.model_tester.create_and_check_xlm_simple_qa(*config_and_inputs)
def test_xlm_qa(self):
config_and_inputs = self.model_tester.prepare_config_and_inputs()
self.model_tester.create_and_check_xlm_qa(*config_and_inputs)
def test_xlm_sequence_classif(self):
config_and_inputs = self.model_tester.prepare_config_and_inputs()
self.model_tester.create_and_check_xlm_sequence_classif(*config_and_inputs)
def test_xlm_token_classif(self):
config_and_inputs = self.model_tester.prepare_config_and_inputs()
self.model_tester.create_and_check_xlm_token_classif(*config_and_inputs)
def test_xlm_for_multiple_choice(self):
config_and_inputs = self.model_tester.prepare_config_and_inputs()
self.model_tester.create_and_check_xlm_for_multiple_choice(*config_and_inputs)
def _check_attentions_for_generate(
self, batch_size, attentions, min_length, max_length, config, use_cache=False, num_beam_groups=1
):
self.assertIsInstance(attentions, tuple)
self.assertListEqual(
[isinstance(iter_attentions, tuple) for iter_attentions in attentions], [True] * len(attentions)
)
self.assertEqual(len(attentions), (max_length - min_length) * num_beam_groups)
for idx, iter_attentions in enumerate(attentions):
# adds PAD dummy token
tgt_len = min_length + idx + 1
src_len = min_length + idx + 1
expected_shape = (
batch_size * num_beam_groups,
config.num_attention_heads,
tgt_len,
src_len,
)
# check attn size
self.assertListEqual(
[layer_attention.shape for layer_attention in iter_attentions], [expected_shape] * len(iter_attentions)
)
def _check_hidden_states_for_generate(
self, batch_size, hidden_states, min_length, max_length, config, use_cache=False, num_beam_groups=1
):
self.assertIsInstance(hidden_states, tuple)
self.assertListEqual(
[isinstance(iter_hidden_states, tuple) for iter_hidden_states in hidden_states],
[True] * len(hidden_states),
)
self.assertEqual(len(hidden_states), (max_length - min_length) * num_beam_groups)
for idx, iter_hidden_states in enumerate(hidden_states):
# adds PAD dummy token
seq_len = min_length + idx + 1
expected_shape = (batch_size * num_beam_groups, seq_len, config.hidden_size)
# check hidden size
self.assertListEqual(
[layer_hidden_states.shape for layer_hidden_states in iter_hidden_states],
[expected_shape] * len(iter_hidden_states),
)
pass
@slow
def test_model_from_pretrained(self):
for model_name in XLM_PRETRAINED_MODEL_ARCHIVE_LIST[:1]:
model = XLMModel.from_pretrained(model_name)
self.assertIsNotNone(model)
@require_torch
class XLMModelLanguageGenerationTest(unittest.TestCase):
@slow
def test_lm_generate_xlm_mlm_en_2048(self):
model = XLMWithLMHeadModel.from_pretrained("xlm-mlm-en-2048")
model.to(torch_device)
input_ids = torch.tensor([[14, 447]], dtype=torch.long, device=torch_device) # the president
expected_output_ids = [
14,
447,
14,
447,
14,
447,
14,
447,
14,
447,
14,
447,
14,
447,
14,
447,
14,
447,
14,
447,
] # the president the president the president the president the president the president the president the president the president the president
# TODO(PVP): this and other input_ids I tried for generation give pretty bad results. Not sure why. Model might just not be made for auto-regressive inference
output_ids = model.generate(input_ids, do_sample=False)
self.assertListEqual(output_ids[0].cpu().numpy().tolist(), expected_output_ids)
|
AdaMix/tests/test_modeling_xlm.py/0
|
{
"file_path": "AdaMix/tests/test_modeling_xlm.py",
"repo_id": "AdaMix",
"token_count": 8258
}
| 74 |
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import unittest
from transformers.pipelines import Pipeline, pipeline
from transformers.testing_utils import require_pandas, require_torch, require_torch_scatter, slow
from .test_pipelines_common import CustomInputPipelineCommonMixin
@require_torch_scatter
@require_torch
@require_pandas
class TQAPipelineTests(CustomInputPipelineCommonMixin, unittest.TestCase):
pipeline_task = "table-question-answering"
pipeline_running_kwargs = {
"padding": "max_length",
}
small_models = [
"lysandre/tiny-tapas-random-wtq",
"lysandre/tiny-tapas-random-sqa",
]
large_models = ["google/tapas-base-finetuned-wtq"] # Models tested with the @slow decorator
valid_inputs = [
{
"table": {
"actors": ["brad pitt", "leonardo di caprio", "george clooney"],
"age": ["56", "45", "59"],
"number of movies": ["87", "53", "69"],
"date of birth": ["7 february 1967", "10 june 1996", "28 november 1967"],
},
"query": "how many movies has george clooney played in?",
},
{
"table": {
"actors": ["brad pitt", "leonardo di caprio", "george clooney"],
"age": ["56", "45", "59"],
"number of movies": ["87", "53", "69"],
"date of birth": ["7 february 1967", "10 june 1996", "28 november 1967"],
},
"query": ["how many movies has george clooney played in?", "how old is he?", "what's his date of birth?"],
},
{
"table": {
"Repository": ["Transformers", "Datasets", "Tokenizers"],
"Stars": ["36542", "4512", "3934"],
"Contributors": ["651", "77", "34"],
"Programming language": ["Python", "Python", "Rust, Python and NodeJS"],
},
"query": [
"What repository has the largest number of stars?",
"Given that the numbers of stars defines if a repository is active, what repository is the most active?",
"What is the number of repositories?",
"What is the average number of stars?",
"What is the total amount of stars?",
],
},
]
def _test_pipeline(self, table_querier: Pipeline):
output_keys = {"answer", "coordinates", "cells"}
valid_inputs = self.valid_inputs
invalid_inputs = [
{"query": "What does it do with empty context ?", "table": ""},
{"query": "What does it do with empty context ?", "table": None},
]
self.assertIsNotNone(table_querier)
mono_result = table_querier(valid_inputs[0])
self.assertIsInstance(mono_result, dict)
for key in output_keys:
self.assertIn(key, mono_result)
multi_result = table_querier(valid_inputs)
self.assertIsInstance(multi_result, list)
for result in multi_result:
self.assertIsInstance(result, (list, dict))
for result in multi_result:
if isinstance(result, list):
for _result in result:
for key in output_keys:
self.assertIn(key, _result)
else:
for key in output_keys:
self.assertIn(key, result)
for bad_input in invalid_inputs:
self.assertRaises(ValueError, table_querier, bad_input)
self.assertRaises(ValueError, table_querier, invalid_inputs)
def test_aggregation(self):
table_querier = pipeline(
"table-question-answering",
model="lysandre/tiny-tapas-random-wtq",
tokenizer="lysandre/tiny-tapas-random-wtq",
)
self.assertIsInstance(table_querier.model.config.aggregation_labels, dict)
self.assertIsInstance(table_querier.model.config.no_aggregation_label_index, int)
mono_result = table_querier(self.valid_inputs[0])
multi_result = table_querier(self.valid_inputs)
self.assertIn("aggregator", mono_result)
for result in multi_result:
if isinstance(result, list):
for _result in result:
self.assertIn("aggregator", _result)
else:
self.assertIn("aggregator", result)
def test_aggregation_with_sequential(self):
table_querier = pipeline(
"table-question-answering",
model="lysandre/tiny-tapas-random-wtq",
tokenizer="lysandre/tiny-tapas-random-wtq",
)
self.assertIsInstance(table_querier.model.config.aggregation_labels, dict)
self.assertIsInstance(table_querier.model.config.no_aggregation_label_index, int)
with self.assertRaises(ValueError):
table_querier(
{
"table": {},
"query": "how many movies has george clooney played in?",
}
)
with self.assertRaises(ValueError):
table_querier(
{
"query": "how many movies has george clooney played in?",
}
)
with self.assertRaises(ValueError):
table_querier(
{
"table": {
"Repository": ["Transformers", "Datasets", "Tokenizers"],
"Stars": ["36542", "4512", "3934"],
"Contributors": ["651", "77", "34"],
"Programming language": ["Python", "Python", "Rust, Python and NodeJS"],
},
"query": "",
}
)
with self.assertRaises(ValueError):
table_querier(
{
"table": {
"Repository": ["Transformers", "Datasets", "Tokenizers"],
"Stars": ["36542", "4512", "3934"],
"Contributors": ["651", "77", "34"],
"Programming language": ["Python", "Python", "Rust, Python and NodeJS"],
},
}
)
def test_empty_errors(self):
table_querier = pipeline(
"table-question-answering",
model="lysandre/tiny-tapas-random-wtq",
tokenizer="lysandre/tiny-tapas-random-wtq",
)
mono_result = table_querier(self.valid_inputs[0], sequential=True)
multi_result = table_querier(self.valid_inputs, sequential=True)
self.assertIn("aggregator", mono_result)
for result in multi_result:
if isinstance(result, list):
for _result in result:
self.assertIn("aggregator", _result)
else:
self.assertIn("aggregator", result)
def test_sequential(self):
table_querier = pipeline(
"table-question-answering",
model="lysandre/tiny-tapas-random-sqa",
tokenizer="lysandre/tiny-tapas-random-sqa",
)
sequential_mono_result_0 = table_querier(self.valid_inputs[0], sequential=True)
sequential_mono_result_1 = table_querier(self.valid_inputs[1], sequential=True)
sequential_multi_result = table_querier(self.valid_inputs, sequential=True)
mono_result_0 = table_querier(self.valid_inputs[0])
mono_result_1 = table_querier(self.valid_inputs[1])
multi_result = table_querier(self.valid_inputs)
# First valid input has a single question, the dict should be equal
self.assertDictEqual(sequential_mono_result_0, mono_result_0)
# Second valid input has several questions, the questions following the first one should not be equal
self.assertNotEqual(sequential_mono_result_1, mono_result_1)
# Assert that we get the same results when passing in several sequences.
for index, (sequential_multi, multi) in enumerate(zip(sequential_multi_result, multi_result)):
if index == 0:
self.assertDictEqual(sequential_multi, multi)
else:
self.assertNotEqual(sequential_multi, multi)
@slow
def test_integration_wtq(self):
tqa_pipeline = pipeline("table-question-answering")
data = {
"Repository": ["Transformers", "Datasets", "Tokenizers"],
"Stars": ["36542", "4512", "3934"],
"Contributors": ["651", "77", "34"],
"Programming language": ["Python", "Python", "Rust, Python and NodeJS"],
}
queries = [
"What repository has the largest number of stars?",
"Given that the numbers of stars defines if a repository is active, what repository is the most active?",
"What is the number of repositories?",
"What is the average number of stars?",
"What is the total amount of stars?",
]
results = tqa_pipeline(data, queries)
expected_results = [
{"answer": "Transformers", "coordinates": [(0, 0)], "cells": ["Transformers"], "aggregator": "NONE"},
{"answer": "Transformers", "coordinates": [(0, 0)], "cells": ["Transformers"], "aggregator": "NONE"},
{
"answer": "COUNT > Transformers, Datasets, Tokenizers",
"coordinates": [(0, 0), (1, 0), (2, 0)],
"cells": ["Transformers", "Datasets", "Tokenizers"],
"aggregator": "COUNT",
},
{
"answer": "AVERAGE > 36542, 4512, 3934",
"coordinates": [(0, 1), (1, 1), (2, 1)],
"cells": ["36542", "4512", "3934"],
"aggregator": "AVERAGE",
},
{
"answer": "SUM > 36542, 4512, 3934",
"coordinates": [(0, 1), (1, 1), (2, 1)],
"cells": ["36542", "4512", "3934"],
"aggregator": "SUM",
},
]
self.assertListEqual(results, expected_results)
@slow
def test_integration_sqa(self):
tqa_pipeline = pipeline(
"table-question-answering",
model="google/tapas-base-finetuned-sqa",
tokenizer="google/tapas-base-finetuned-sqa",
)
data = {
"Actors": ["Brad Pitt", "Leonardo Di Caprio", "George Clooney"],
"Age": ["56", "45", "59"],
"Number of movies": ["87", "53", "69"],
"Date of birth": ["7 february 1967", "10 june 1996", "28 november 1967"],
}
queries = ["How many movies has George Clooney played in?", "How old is he?", "What's his date of birth?"]
results = tqa_pipeline(data, queries, sequential=True)
expected_results = [
{"answer": "69", "coordinates": [(2, 2)], "cells": ["69"]},
{"answer": "59", "coordinates": [(2, 1)], "cells": ["59"]},
{"answer": "28 november 1967", "coordinates": [(2, 3)], "cells": ["28 november 1967"]},
]
self.assertListEqual(results, expected_results)
|
AdaMix/tests/test_pipelines_table_question_answering.py/0
|
{
"file_path": "AdaMix/tests/test_pipelines_table_question_answering.py",
"repo_id": "AdaMix",
"token_count": 5496
}
| 75 |
# coding=utf-8
# Copyright 2020 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import os
import pickle
import unittest
from transformers import AutoTokenizer
from transformers.models.bert_japanese.tokenization_bert_japanese import (
VOCAB_FILES_NAMES,
BertJapaneseTokenizer,
CharacterTokenizer,
MecabTokenizer,
WordpieceTokenizer,
)
from transformers.testing_utils import custom_tokenizers
from .test_tokenization_common import TokenizerTesterMixin
@custom_tokenizers
class BertJapaneseTokenizationTest(TokenizerTesterMixin, unittest.TestCase):
tokenizer_class = BertJapaneseTokenizer
space_between_special_tokens = True
def setUp(self):
super().setUp()
vocab_tokens = [
"[UNK]",
"[CLS]",
"[SEP]",
"こんにちは",
"こん",
"にちは",
"ばんは",
"##こん",
"##にちは",
"##ばんは",
"世界",
"##世界",
"、",
"##、",
"。",
"##。",
]
self.vocab_file = os.path.join(self.tmpdirname, VOCAB_FILES_NAMES["vocab_file"])
with open(self.vocab_file, "w", encoding="utf-8") as vocab_writer:
vocab_writer.write("".join([x + "\n" for x in vocab_tokens]))
def get_input_output_texts(self, tokenizer):
input_text = "こんにちは、世界。 \nこんばんは、世界。"
output_text = "こんにちは 、 世界 。 こんばんは 、 世界 。"
return input_text, output_text
def get_clean_sequence(self, tokenizer):
input_text, output_text = self.get_input_output_texts(tokenizer)
ids = tokenizer.encode(output_text, add_special_tokens=False)
text = tokenizer.decode(ids, clean_up_tokenization_spaces=False)
return text, ids
def test_pretokenized_inputs(self):
pass # TODO add if relevant
def test_maximum_encoding_length_pair_input(self):
pass # TODO add if relevant
def test_maximum_encoding_length_single_input(self):
pass # TODO add if relevant
def test_full_tokenizer(self):
tokenizer = self.tokenizer_class(self.vocab_file)
tokens = tokenizer.tokenize("こんにちは、世界。\nこんばんは、世界。")
self.assertListEqual(tokens, ["こんにちは", "、", "世界", "。", "こん", "##ばんは", "、", "世界", "。"])
self.assertListEqual(tokenizer.convert_tokens_to_ids(tokens), [3, 12, 10, 14, 4, 9, 12, 10, 14])
def test_pickle_mecab_tokenizer(self):
tokenizer = self.tokenizer_class(self.vocab_file, word_tokenizer_type="mecab")
self.assertIsNotNone(tokenizer)
text = "こんにちは、世界。\nこんばんは、世界。"
tokens = tokenizer.tokenize(text)
self.assertListEqual(tokens, ["こんにちは", "、", "世界", "。", "こん", "##ばんは", "、", "世界", "。"])
self.assertListEqual(tokenizer.convert_tokens_to_ids(tokens), [3, 12, 10, 14, 4, 9, 12, 10, 14])
filename = os.path.join(self.tmpdirname, "tokenizer.bin")
with open(filename, "wb") as handle:
pickle.dump(tokenizer, handle)
with open(filename, "rb") as handle:
tokenizer_new = pickle.load(handle)
tokens_loaded = tokenizer_new.tokenize(text)
self.assertListEqual(tokens, tokens_loaded)
def test_mecab_tokenizer_ipadic(self):
tokenizer = MecabTokenizer(mecab_dic="ipadic")
self.assertListEqual(
tokenizer.tokenize(" \tｱｯﾌﾟﾙストアでiPhone８ が \n 発売された 。 "),
["アップルストア", "で", "iPhone", "8", "が", "発売", "さ", "れ", "た", "。"],
)
def test_mecab_tokenizer_unidic_lite(self):
try:
tokenizer = MecabTokenizer(mecab_dic="unidic_lite")
except ModuleNotFoundError:
return
self.assertListEqual(
tokenizer.tokenize(" \tｱｯﾌﾟﾙストアでiPhone８ が \n 発売された 。 "),
["アップル", "ストア", "で", "iPhone", "8", "が", "発売", "さ", "れ", "た", "。"],
)
def test_mecab_tokenizer_unidic(self):
try:
tokenizer = MecabTokenizer(mecab_dic="unidic")
except ModuleNotFoundError:
return
self.assertListEqual(
tokenizer.tokenize(" \tｱｯﾌﾟﾙストアでiPhone８ が \n 発売された 。 "),
["アップル", "ストア", "で", "iPhone", "8", "が", "発売", "さ", "れ", "た", "。"],
)
def test_mecab_tokenizer_lower(self):
tokenizer = MecabTokenizer(do_lower_case=True, mecab_dic="ipadic")
self.assertListEqual(
tokenizer.tokenize(" \tｱｯﾌﾟﾙストアでiPhone８ が \n 発売された 。 "),
["アップルストア", "で", "iphone", "8", "が", "発売", "さ", "れ", "た", "。"],
)
def test_mecab_tokenizer_with_option(self):
try:
tokenizer = MecabTokenizer(
do_lower_case=True, normalize_text=False, mecab_option="-d /usr/local/lib/mecab/dic/jumandic"
)
except RuntimeError:
# if dict doesn't exist in the system, previous code raises this error.
return
self.assertListEqual(
tokenizer.tokenize(" \tｱｯﾌﾟﾙストアでiPhone８ が \n 発売された 。 "),
["ｱｯﾌﾟﾙストア", "で", "iPhone", "８", "が", "発売", "さ", "れた", "\u3000", "。"],
)
def test_mecab_tokenizer_no_normalize(self):
tokenizer = MecabTokenizer(normalize_text=False, mecab_dic="ipadic")
self.assertListEqual(
tokenizer.tokenize(" \tｱｯﾌﾟﾙストアでiPhone８ が \n 発売された 。 "),
["ｱｯﾌﾟﾙストア", "で", "iPhone", "８", "が", "発売", "さ", "れ", "た", " ", "。"],
)
def test_wordpiece_tokenizer(self):
vocab_tokens = ["[UNK]", "[CLS]", "[SEP]", "こんにちは", "こん", "にちは" "ばんは", "##こん", "##にちは", "##ばんは"]
vocab = {}
for (i, token) in enumerate(vocab_tokens):
vocab[token] = i
tokenizer = WordpieceTokenizer(vocab=vocab, unk_token="[UNK]")
self.assertListEqual(tokenizer.tokenize(""), [])
self.assertListEqual(tokenizer.tokenize("こんにちは"), ["こんにちは"])
self.assertListEqual(tokenizer.tokenize("こんばんは"), ["こん", "##ばんは"])
self.assertListEqual(tokenizer.tokenize("こんばんは こんばんにちは こんにちは"), ["こん", "##ばんは", "[UNK]", "こんにちは"])
def test_sequence_builders(self):
tokenizer = self.tokenizer_class.from_pretrained("cl-tohoku/bert-base-japanese")
text = tokenizer.encode("ありがとう。", add_special_tokens=False)
text_2 = tokenizer.encode("どういたしまして。", add_special_tokens=False)
encoded_sentence = tokenizer.build_inputs_with_special_tokens(text)
encoded_pair = tokenizer.build_inputs_with_special_tokens(text, text_2)
# 2 is for "[CLS]", 3 is for "[SEP]"
assert encoded_sentence == [2] + text + [3]
assert encoded_pair == [2] + text + [3] + text_2 + [3]
@custom_tokenizers
class BertJapaneseCharacterTokenizationTest(TokenizerTesterMixin, unittest.TestCase):
tokenizer_class = BertJapaneseTokenizer
def setUp(self):
super().setUp()
vocab_tokens = ["[UNK]", "[CLS]", "[SEP]", "こ", "ん", "に", "ち", "は", "ば", "世", "界", "、", "。"]
self.vocab_file = os.path.join(self.tmpdirname, VOCAB_FILES_NAMES["vocab_file"])
with open(self.vocab_file, "w", encoding="utf-8") as vocab_writer:
vocab_writer.write("".join([x + "\n" for x in vocab_tokens]))
def get_tokenizer(self, **kwargs):
return BertJapaneseTokenizer.from_pretrained(self.tmpdirname, subword_tokenizer_type="character", **kwargs)
def get_input_output_texts(self, tokenizer):
input_text = "こんにちは、世界。 \nこんばんは、世界。"
output_text = "こ ん に ち は 、 世 界 。 こ ん ば ん は 、 世 界 。"
return input_text, output_text
def test_pretokenized_inputs(self):
pass # TODO add if relevant
def test_maximum_encoding_length_pair_input(self):
pass # TODO add if relevant
def test_maximum_encoding_length_single_input(self):
pass # TODO add if relevant
def test_full_tokenizer(self):
tokenizer = self.tokenizer_class(self.vocab_file, subword_tokenizer_type="character")
tokens = tokenizer.tokenize("こんにちは、世界。 \nこんばんは、世界。")
self.assertListEqual(
tokens, ["こ", "ん", "に", "ち", "は", "、", "世", "界", "。", "こ", "ん", "ば", "ん", "は", "、", "世", "界", "。"]
)
self.assertListEqual(
tokenizer.convert_tokens_to_ids(tokens), [3, 4, 5, 6, 7, 11, 9, 10, 12, 3, 4, 8, 4, 7, 11, 9, 10, 12]
)
def test_character_tokenizer(self):
vocab_tokens = ["[UNK]", "[CLS]", "[SEP]", "こ", "ん", "に", "ち", "は", "ば", "世", "界" "、", "。"]
vocab = {}
for (i, token) in enumerate(vocab_tokens):
vocab[token] = i
tokenizer = CharacterTokenizer(vocab=vocab, unk_token="[UNK]")
self.assertListEqual(tokenizer.tokenize(""), [])
self.assertListEqual(tokenizer.tokenize("こんにちは"), ["こ", "ん", "に", "ち", "は"])
self.assertListEqual(tokenizer.tokenize("こんにちほ"), ["こ", "ん", "に", "ち", "[UNK]"])
def test_sequence_builders(self):
tokenizer = self.tokenizer_class.from_pretrained("cl-tohoku/bert-base-japanese-char")
text = tokenizer.encode("ありがとう。", add_special_tokens=False)
text_2 = tokenizer.encode("どういたしまして。", add_special_tokens=False)
encoded_sentence = tokenizer.build_inputs_with_special_tokens(text)
encoded_pair = tokenizer.build_inputs_with_special_tokens(text, text_2)
# 2 is for "[CLS]", 3 is for "[SEP]"
assert encoded_sentence == [2] + text + [3]
assert encoded_pair == [2] + text + [3] + text_2 + [3]
@custom_tokenizers
class AutoTokenizerCustomTest(unittest.TestCase):
def test_tokenizer_bert_japanese(self):
EXAMPLE_BERT_JAPANESE_ID = "cl-tohoku/bert-base-japanese"
tokenizer = AutoTokenizer.from_pretrained(EXAMPLE_BERT_JAPANESE_ID)
self.assertIsInstance(tokenizer, BertJapaneseTokenizer)
|
AdaMix/tests/test_tokenization_bert_japanese.py/0
|
{
"file_path": "AdaMix/tests/test_tokenization_bert_japanese.py",
"repo_id": "AdaMix",
"token_count": 5199
}
| 76 |
# Copyright 2021 The HuggingFace Team. All rights reserved.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import os
import tempfile
import unittest
from pathlib import Path
from shutil import copyfile
from transformers import M2M100Tokenizer, is_torch_available
from transformers.file_utils import is_sentencepiece_available
from transformers.testing_utils import require_sentencepiece, require_tokenizers, require_torch
if is_sentencepiece_available():
from transformers.models.m2m_100.tokenization_m2m_100 import save_json, VOCAB_FILES_NAMES
from .test_tokenization_common import TokenizerTesterMixin
if is_sentencepiece_available():
SAMPLE_SP = os.path.join(os.path.dirname(os.path.abspath(__file__)), "fixtures/test_sentencepiece.model")
if is_torch_available():
from transformers.models.m2m_100.modeling_m2m_100 import shift_tokens_right
EN_CODE = 128022
FR_CODE = 128028
@require_sentencepiece
class M2M100TokenizationTest(TokenizerTesterMixin, unittest.TestCase):
tokenizer_class = M2M100Tokenizer
test_rust_tokenizer = False
test_seq2seq = False
def setUp(self):
super().setUp()
vocab = ["</s>", "<unk>", "▁This", "▁is", "▁a", "▁t", "est", "\u0120", "<pad>"]
vocab_tokens = dict(zip(vocab, range(len(vocab))))
save_dir = Path(self.tmpdirname)
save_json(vocab_tokens, save_dir / VOCAB_FILES_NAMES["vocab_file"])
if not (save_dir / VOCAB_FILES_NAMES["spm_file"]).exists():
copyfile(SAMPLE_SP, save_dir / VOCAB_FILES_NAMES["spm_file"])
tokenizer = M2M100Tokenizer.from_pretrained(self.tmpdirname)
tokenizer.save_pretrained(self.tmpdirname)
def get_tokenizer(self, **kwargs):
return M2M100Tokenizer.from_pretrained(self.tmpdirname, **kwargs)
def get_input_output_texts(self, tokenizer):
return (
"This is a test",
"This is a test",
)
@unittest.skip("Skip this test while all models are still to be uploaded.")
def test_pretrained_model_lists(self):
pass
def test_full_tokenizer(self):
tokenizer = self.get_tokenizer()
tokens = tokenizer.tokenize("This is a test")
self.assertListEqual(tokens, ["▁This", "▁is", "▁a", "▁t", "est"])
self.assertListEqual(
tokenizer.convert_tokens_to_ids(tokens),
[2, 3, 4, 5, 6],
)
back_tokens = tokenizer.convert_ids_to_tokens([2, 3, 4, 5, 6])
self.assertListEqual(back_tokens, ["▁This", "▁is", "▁a", "▁t", "est"])
text = tokenizer.convert_tokens_to_string(tokens)
self.assertEqual(text, "This is a test")
@require_torch
@require_sentencepiece
@require_tokenizers
class M2M100TokenizerIntegrationTest(unittest.TestCase):
checkpoint_name = "facebook/m2m100_418M"
src_text = [
"In my opinion, there are two levels of response from the French government.",
"NSA Affair Emphasizes Complete Lack of Debate on Intelligence",
]
tgt_text = [
"Selon moi, il y a deux niveaux de réponse de la part du gouvernement français.",
"L'affaire NSA souligne l'absence totale de débat sur le renseignement",
]
# fmt: off
expected_src_tokens = [EN_CODE, 593, 1949, 115781, 4, 71586, 4234, 60633, 126233, 432, 123808, 15592, 1197, 117132, 120618, 5, 2]
# fmt: on
@classmethod
def setUpClass(cls):
cls.tokenizer: M2M100Tokenizer = M2M100Tokenizer.from_pretrained(
cls.checkpoint_name, src_lang="en", tgt_lang="fr"
)
cls.pad_token_id = 1
return cls
def check_language_codes(self):
self.assertEqual(self.tokenizer.get_lang_id("ar"), 128006)
self.assertEqual(self.tokenizer.get_lang_id("en"), 128022)
self.assertEqual(self.tokenizer.get_lang_id("ro"), 128076)
self.assertEqual(self.tokenizer.get_lang_id("mr"), 128063)
def test_tokenizer_batch_encode_plus(self):
self.tokenizer.src_lang = "en"
ids = self.tokenizer.batch_encode_plus(self.src_text).input_ids[0]
self.assertListEqual(self.expected_src_tokens, ids)
def test_tokenizer_decode_ignores_language_codes(self):
self.assertIn(FR_CODE, self.tokenizer.all_special_ids)
# fmt: off
generated_ids = [FR_CODE, 5364, 82, 8642, 4, 294, 47, 8, 14028, 136, 3286, 9706, 6, 90797, 6, 144012, 162, 88128, 30061, 5, 2]
# fmt: on
result = self.tokenizer.decode(generated_ids, skip_special_tokens=True)
expected_french = self.tokenizer.decode(generated_ids[1:], skip_special_tokens=True)
self.assertEqual(result, expected_french)
self.assertNotIn(self.tokenizer.eos_token, result)
def test_special_tokens_unaffacted_by_save_load(self):
tmpdirname = tempfile.mkdtemp()
original_special_tokens = self.tokenizer.lang_token_to_id
self.tokenizer.save_pretrained(tmpdirname)
new_tok = M2M100Tokenizer.from_pretrained(tmpdirname)
self.assertDictEqual(new_tok.lang_token_to_id, original_special_tokens)
@require_torch
def test_batch_fairseq_parity(self):
self.tokenizer.src_lang = "en"
self.tokenizer.tgt_lang = "fr"
batch = self.tokenizer(self.src_text, padding=True, return_tensors="pt")
with self.tokenizer.as_target_tokenizer():
batch["labels"] = self.tokenizer(self.tgt_text, padding=True, return_tensors="pt").input_ids
batch["decoder_input_ids"] = shift_tokens_right(
batch["labels"], self.tokenizer.pad_token_id, self.tokenizer.eos_token_id
)
for k in batch:
batch[k] = batch[k].tolist()
# batch = {k: v.tolist() for k,v in batch.items()}
# fairseq batch: https://gist.github.com/sshleifer/cba08bc2109361a74ac3760a7e30e4f4
# batch.decoder_inputs_ids[0][0] ==
assert batch.input_ids[1][0] == EN_CODE
assert batch.input_ids[1][-1] == 2
assert batch.labels[1][0] == FR_CODE
assert batch.labels[1][-1] == 2
assert batch.decoder_input_ids[1][:2] == [2, FR_CODE]
@require_torch
def test_src_lang_setter(self):
self.tokenizer.src_lang = "mr"
self.assertListEqual(self.tokenizer.prefix_tokens, [self.tokenizer.get_lang_id("mr")])
self.assertListEqual(self.tokenizer.suffix_tokens, [self.tokenizer.eos_token_id])
self.tokenizer.src_lang = "zh"
self.assertListEqual(self.tokenizer.prefix_tokens, [self.tokenizer.get_lang_id("zh")])
self.assertListEqual(self.tokenizer.suffix_tokens, [self.tokenizer.eos_token_id])
@require_torch
def test_as_target_tokenizer(self):
self.tokenizer.tgt_lang = "mr"
with self.tokenizer.as_target_tokenizer():
self.assertListEqual(self.tokenizer.prefix_tokens, [self.tokenizer.get_lang_id("mr")])
self.assertListEqual(self.tokenizer.suffix_tokens, [self.tokenizer.eos_token_id])
self.assertListEqual(self.tokenizer.prefix_tokens, [self.tokenizer.get_lang_id(self.tokenizer.src_lang)])
self.tokenizer.tgt_lang = "zh"
with self.tokenizer.as_target_tokenizer():
self.assertListEqual(self.tokenizer.prefix_tokens, [self.tokenizer.get_lang_id("zh")])
self.assertListEqual(self.tokenizer.suffix_tokens, [self.tokenizer.eos_token_id])
self.assertListEqual(self.tokenizer.prefix_tokens, [self.tokenizer.get_lang_id(self.tokenizer.src_lang)])
|
AdaMix/tests/test_tokenization_m2m_100.py/0
|
{
"file_path": "AdaMix/tests/test_tokenization_m2m_100.py",
"repo_id": "AdaMix",
"token_count": 3428
}
| 77 |
# coding=utf-8
# Copyright 2020 The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
import argparse
import glob
import os
import re
import tempfile
# All paths are set with the intent you should run this script from the root of the repo with the command
# python utils/check_copies.py
TRANSFORMERS_PATH = "src/transformers"
PATH_TO_DOCS = "docs/source"
REPO_PATH = "."
def find_code_in_transformers(object_name):
""" Find and return the code source code of `object_name`."""
parts = object_name.split(".")
i = 0
# First let's find the module where our object lives.
module = parts[i]
while i < len(parts) and not os.path.isfile(os.path.join(TRANSFORMERS_PATH, f"{module}.py")):
i += 1
if i < len(parts):
module = os.path.join(module, parts[i])
if i >= len(parts):
raise ValueError(
f"`object_name` should begin with the name of a module of transformers but got {object_name}."
)
with open(os.path.join(TRANSFORMERS_PATH, f"{module}.py"), "r", encoding="utf-8", newline="\n") as f:
lines = f.readlines()
# Now let's find the class / func in the code!
indent = ""
line_index = 0
for name in parts[i + 1 :]:
while (
line_index < len(lines) and re.search(fr"^{indent}(class|def)\s+{name}(\(|\:)", lines[line_index]) is None
):
line_index += 1
indent += " "
line_index += 1
if line_index >= len(lines):
raise ValueError(f" {object_name} does not match any function or class in {module}.")
# We found the beginning of the class / func, now let's find the end (when the indent diminishes).
start_index = line_index
while line_index < len(lines) and (lines[line_index].startswith(indent) or len(lines[line_index]) <= 1):
line_index += 1
# Clean up empty lines at the end (if any).
while len(lines[line_index - 1]) <= 1:
line_index -= 1
code_lines = lines[start_index:line_index]
return "".join(code_lines)
_re_copy_warning = re.compile(r"^(\s*)#\s*Copied from\s+transformers\.(\S+\.\S+)\s*($|\S.*$)")
_re_replace_pattern = re.compile(r"^\s*(\S+)->(\S+)(\s+.*|$)")
def blackify(code):
"""
Applies the black part of our `make style` command to `code`.
"""
has_indent = code.startswith(" ")
if has_indent:
code = f"class Bla:\n{code}"
with tempfile.TemporaryDirectory() as d:
fname = os.path.join(d, "tmp.py")
with open(fname, "w", encoding="utf-8", newline="\n") as f:
f.write(code)
os.system(f"black -q --line-length 119 --target-version py35 {fname}")
with open(fname, "r", encoding="utf-8", newline="\n") as f:
result = f.read()
return result[len("class Bla:\n") :] if has_indent else result
def get_indent(code):
lines = code.split("\n")
idx = 0
while idx < len(lines) and len(lines[idx]) == 0:
idx += 1
if idx < len(lines):
return re.search(r"^(\s*)\S", lines[idx]).groups()[0]
return 0
def is_copy_consistent(filename, overwrite=False):
"""
Check if the code commented as a copy in `filename` matches the original.
Return the differences or overwrites the content depending on `overwrite`.
"""
with open(filename, "r", encoding="utf-8", newline="\n") as f:
lines = f.readlines()
diffs = []
line_index = 0
# Not a for loop cause `lines` is going to change (if `overwrite=True`).
while line_index < len(lines):
search = _re_copy_warning.search(lines[line_index])
if search is None:
line_index += 1
continue
# There is some copied code here, let's retrieve the original.
indent, object_name, replace_pattern = search.groups()
theoretical_code = find_code_in_transformers(object_name)
theoretical_indent = get_indent(theoretical_code)
start_index = line_index + 1 if indent == theoretical_indent else line_index + 2
indent = theoretical_indent
line_index = start_index
# Loop to check the observed code, stop when indentation diminishes or if we see a End copy comment.
should_continue = True
while line_index < len(lines) and should_continue:
line_index += 1
if line_index >= len(lines):
break
line = lines[line_index]
should_continue = (len(line) <= 1 or line.startswith(indent)) and re.search(
f"^{indent}# End copy", line
) is None
# Clean up empty lines at the end (if any).
while len(lines[line_index - 1]) <= 1:
line_index -= 1
observed_code_lines = lines[start_index:line_index]
observed_code = "".join(observed_code_lines)
# Before comparing, use the `replace_pattern` on the original code.
if len(replace_pattern) > 0:
patterns = replace_pattern.replace("with", "").split(",")
patterns = [_re_replace_pattern.search(p) for p in patterns]
for pattern in patterns:
if pattern is None:
continue
obj1, obj2, option = pattern.groups()
theoretical_code = re.sub(obj1, obj2, theoretical_code)
if option.strip() == "all-casing":
theoretical_code = re.sub(obj1.lower(), obj2.lower(), theoretical_code)
theoretical_code = re.sub(obj1.upper(), obj2.upper(), theoretical_code)
# Test for a diff and act accordingly.
if observed_code != theoretical_code:
diffs.append([object_name, start_index])
if overwrite:
lines = lines[:start_index] + [theoretical_code] + lines[line_index:]
line_index = start_index + 1
if overwrite and len(diffs) > 0:
# Warn the user a file has been modified.
print(f"Detected changes, rewriting {filename}.")
with open(filename, "w", encoding="utf-8", newline="\n") as f:
f.writelines(lines)
return diffs
def check_copies(overwrite: bool = False):
all_files = glob.glob(os.path.join(TRANSFORMERS_PATH, "**/*.py"), recursive=True)
diffs = []
for filename in all_files:
new_diffs = is_copy_consistent(filename, overwrite)
diffs += [f"- {filename}: copy does not match {d[0]} at line {d[1]}" for d in new_diffs]
if not overwrite and len(diffs) > 0:
diff = "\n".join(diffs)
raise Exception(
"Found the following copy inconsistencies:\n"
+ diff
+ "\nRun `make fix-copies` or `python utils/check_copies.py --fix_and_overwrite` to fix them."
)
check_model_list_copy(overwrite=overwrite)
def get_model_list():
""" Extracts the model list from the README. """
# If the introduction or the conclusion of the list change, the prompts may need to be updated.
_start_prompt = "🤗 Transformers currently provides the following architectures"
_end_prompt = "1. Want to contribute a new model?"
with open(os.path.join(REPO_PATH, "README.md"), "r", encoding="utf-8", newline="\n") as f:
lines = f.readlines()
# Find the start of the list.
start_index = 0
while not lines[start_index].startswith(_start_prompt):
start_index += 1
start_index += 1
result = []
current_line = ""
end_index = start_index
while not lines[end_index].startswith(_end_prompt):
if lines[end_index].startswith("1."):
if len(current_line) > 1:
result.append(current_line)
current_line = lines[end_index]
elif len(lines[end_index]) > 1:
current_line = f"{current_line[:-1]} {lines[end_index].lstrip()}"
end_index += 1
if len(current_line) > 1:
result.append(current_line)
return "".join(result)
def split_long_line_with_indent(line, max_per_line, indent):
""" Split the `line` so that it doesn't go over `max_per_line` and adds `indent` to new lines. """
words = line.split(" ")
lines = []
current_line = words[0]
for word in words[1:]:
if len(f"{current_line} {word}") > max_per_line:
lines.append(current_line)
current_line = " " * indent + word
else:
current_line = f"{current_line} {word}"
lines.append(current_line)
return "\n".join(lines)
def convert_to_rst(model_list, max_per_line=None):
""" Convert `model_list` to rst format. """
# Convert **[description](link)** to `description <link>`__
def _rep_link(match):
title, link = match.groups()
# Keep hard links for the models not released yet
if "master" in link or not link.startswith("https://huggingface.co/transformers"):
return f"`{title} <{link}>`__"
# Convert links to relative links otherwise
else:
link = link[len("https://huggingface.co/transformers/") : -len(".html")]
return f":doc:`{title} <{link}>`"
model_list = re.sub(r"\*\*\[([^\]]*)\]\(([^\)]*)\)\*\*", _rep_link, model_list)
# Convert [description](link) to `description <link>`__
model_list = re.sub(r"\[([^\]]*)\]\(([^\)]*)\)", r"`\1 <\2>`__", model_list)
# Enumerate the lines properly
lines = model_list.split("\n")
result = []
for i, line in enumerate(lines):
line = re.sub(r"^\s*(\d+)\.", f"{i+1}.", line)
# Split the lines that are too long
if max_per_line is not None and len(line) > max_per_line:
prompt = re.search(r"^(\s*\d+\.\s+)\S", line)
indent = len(prompt.groups()[0]) if prompt is not None else 0
line = split_long_line_with_indent(line, max_per_line, indent)
result.append(line)
return "\n".join(result)
def _find_text_in_file(filename, start_prompt, end_prompt):
"""
Find the text in `filename` between a line beginning with `start_prompt` and before `end_prompt`, removing empty
lines.
"""
with open(filename, "r", encoding="utf-8", newline="\n") as f:
lines = f.readlines()
# Find the start prompt.
start_index = 0
while not lines[start_index].startswith(start_prompt):
start_index += 1
start_index += 1
end_index = start_index
while not lines[end_index].startswith(end_prompt):
end_index += 1
end_index -= 1
while len(lines[start_index]) <= 1:
start_index += 1
while len(lines[end_index]) <= 1:
end_index -= 1
end_index += 1
return "".join(lines[start_index:end_index]), start_index, end_index, lines
def check_model_list_copy(overwrite=False, max_per_line=119):
""" Check the model lists in the README and index.rst are consistent and maybe `overwrite`. """
rst_list, start_index, end_index, lines = _find_text_in_file(
filename=os.path.join(PATH_TO_DOCS, "index.rst"),
start_prompt=" This list is updated automatically from the README",
end_prompt=".. _bigtable:",
)
md_list = get_model_list()
converted_list = convert_to_rst(md_list, max_per_line=max_per_line)
if converted_list != rst_list:
if overwrite:
with open(os.path.join(PATH_TO_DOCS, "index.rst"), "w", encoding="utf-8", newline="\n") as f:
f.writelines(lines[:start_index] + [converted_list] + lines[end_index:])
else:
raise ValueError(
"The model list in the README changed and the list in `index.rst` has not been updated. Run "
"`make fix-copies` to fix this."
)
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument("--fix_and_overwrite", action="store_true", help="Whether to fix inconsistencies.")
args = parser.parse_args()
check_copies(args.fix_and_overwrite)
|
AdaMix/utils/check_copies.py/0
|
{
"file_path": "AdaMix/utils/check_copies.py",
"repo_id": "AdaMix",
"token_count": 5181
}
| 78 |
from __future__ import absolute_import, division, print_function, unicode_literals
import numpy as np
import os
import sys
import airsimdroneracingvae
# imports
curr_dir = os.path.dirname(os.path.abspath(__file__))
import_path = os.path.join(curr_dir, '..')
sys.path.insert(0, import_path)
import racing_models
import racing_utils
class VelRegressor():
def __init__(self, regressor_type, bc_weights_path, feature_weights_path=None, latent_space_constraints=True):
self.regressor_type = regressor_type
# create models
if self.regressor_type == 'full':
self.bc_model = racing_models.bc_full.BcFull()
self.bc_model.load_weights(bc_weights_path)
elif self.regressor_type == 'latent':
# create model
if latent_space_constraints is True:
self.cmvae_model = racing_models.cmvae.CmvaeDirect(n_z=10, gate_dim=4, res=64, trainable_model=False)
else:
self.cmvae_model = racing_models.cmvae.Cmvae(n_z=10, gate_dim=4, res=64, trainable_model=False)
self.cmvae_model.load_weights(feature_weights_path)
self.bc_model = racing_models.bc_latent.BcLatent()
self.bc_model.load_weights(bc_weights_path)
elif self.regressor_type == 'reg':
self.reg_model = racing_models.dronet.Dronet(num_outputs=4, include_top=True)
self.reg_model.load_weights(feature_weights_path)
self.bc_model = racing_models.bc_latent.BcLatent()
self.bc_model.load_weights(bc_weights_path)
def predict_velocities(self, img, p_o_b):
img = (img / 255.0) * 2 - 1.0
if self.regressor_type == 'full':
predictions = self.bc_model(img)
elif self.regressor_type == 'latent':
z, _, _ = self.cmvae_model.encode(img)
predictions = self.bc_model(z)
elif self.regressor_type == 'reg':
z = self.reg_model(img)
predictions = self.bc_model(z)
predictions = predictions.numpy()
predictions = racing_utils.dataset_utils.de_normalize_v(predictions)
# print('Predicted body vel: \n {}'.format(predictions[0]))
v_xyz_world = racing_utils.geom_utils.convert_t_body_2_world(airsimdroneracingvae.Vector3r(predictions[0,0], predictions[0,1], predictions[0,2]), p_o_b.orientation)
return np.array([v_xyz_world.x_val, v_xyz_world.y_val, v_xyz_world.z_val, predictions[0,3]])
|
AirSim-Drone-Racing-VAE-Imitation/imitation_learning/vel_regressor.py/0
|
{
"file_path": "AirSim-Drone-Racing-VAE-Imitation/imitation_learning/vel_regressor.py",
"repo_id": "AirSim-Drone-Racing-VAE-Imitation",
"token_count": 1119
}
| 79 |
from scipy.interpolate import CubicSpline, CubicHermiteSpline
import airsimneurips as airsim
import cvxpy as cp
import numpy as np
import time
gate_dimensions = [1.6, 1.6]
gate_facing_vector = airsim.Vector3r(x_val=0, y_val=1, z_val=0)
def rotate_vector(q, v):
v_quat = v.to_Quaternionr()
v_rotated_ = q * v_quat * q.inverse()
return airsim.Vector3r(x_val=v_rotated_.x_val, y_val=v_rotated_.y_val, z_val=v_rotated_.z_val)
class SplinedTrack:
"""This class represents a Track defined by Gates.
A spline is fitted through the Gates with tangential constraints.
This spline is then sampled at 2048 points.
"""
def __init__(self, gate_poses):
self.gates = gate_poses
self.n_gates = np.size(gate_poses, 0)
positions = np.array([pose.position.to_numpy_array() for pose in gate_poses])
dists = np.linalg.norm(positions[1:, :] - positions[:-1, :], axis=1)
self.arc_length = np.zeros(shape=self.n_gates)
self.arc_length[1:] = np.cumsum(dists)
# tangents from quaternion
# by rotating default gate direction with quaternion
self.tangents = np.zeros(shape=(self.n_gates, 3))
for i, pose in enumerate(gate_poses):
self.tangents[i, :] = rotate_vector(pose.orientation, gate_facing_vector).to_numpy_array()
self.track_spline = CubicHermiteSpline(self.arc_length, positions, self.tangents, axis=0)
# gate width to track (half) width
gate_widths = [gate_dimensions[0] / 2.0 for gate in gate_poses]
gate_heights = [gate_dimensions[1] / 2.0 for gate in gate_poses]
self.track_width_spline = CubicSpline(self.arc_length, gate_widths, axis=0)
self.track_height_spline = CubicSpline(self.arc_length, gate_heights, axis=0)
# sample 2048 points, the 2048 are arbitrary and should really be a parameter
taus = np.linspace(self.arc_length[0], self.arc_length[-1], 2**12)
self.track_centers = self.track_spline(taus)
self.track_tangents = self.track_spline.derivative(nu=1)(taus)
self.track_tangents /= np.linalg.norm(self.track_tangents, axis=1)[:, np.newaxis]
self.track_normals = np.zeros_like(self.track_tangents)
self.track_normals[:, 0] = -self.track_tangents[:, 1]
self.track_normals[:, 1] = self.track_tangents[:, 0]
self.track_normals /= np.linalg.norm(self.track_normals, axis=1)[:, np.newaxis]
self.track_widths = self.track_width_spline(taus)
self.track_heights = self.track_height_spline(taus)
def track_frame_at(self, p):
"""Find closest track frame to a reference point p.
:param p: Point of reference
:return: Index of track frame, track center, tangent and normal.
"""
i = np.linalg.norm(self.track_centers - p, axis=1).argmin()
return i, self.track_centers[i], self.track_tangents[i], self.track_normals[i], \
self.track_widths[i], self.track_heights[i]
class IBRController:
"""
OVERVIEW:
Given the state of both drones 0 and 1, this controller iteratively computes trajectories for both drones, that are
collision-free and stay within the track and conform to the dynamical model (maximal speed).
These trajectories are specified as 'n_steps' points every 'dt' seconds.
ITERATIVE BEST RESPONSE:
Initially, these trajectories are sampled to follow the track (for more information on the track see above).
Then, fixing the trajectory for drone 1, the trajectory for drone 0 is optimized.
Next, vice versa, the trajectory for drone 1 is optimized while keeping the trajectory for drone 0 fixed.
This is done iteratively for a fixed number of iterations.
The hope is that eventually we arrive at a fixed-point, i. e. after optimizing for both drones we get the same
trajectories again.
COMPUTING THE BEST RESPONSE:
Since some of the constraints are non-convex quadratic constraint (namely the non-collision constraint),
the optimized trajectory is found in an iteratively fashion (sequential quadratic program, short SQP) by linearizing
the non-collision constraints around the current guess.
In case no feasible solution is found, the problem is relaxed by turning constraints into objectives.
PARAMETERS:
i_ego The index of the 'ego' drone
i_opp The index of the opponent drone
dt Sampling time for trajectories
blocking_term Coefficient on the "blocking" objective
n_steps Length of the trajectories
n_game_iters Number of game iterations (how often the best response is computed for drone i_0)
n_sqp_iters Number of SQP iterations (how often the constraints are linearized and the optimization is solved)
drone_paramstangents
r_coll Collision radius, see competition guidelines.
r_safe Safety radius, see competition guidelines
v_max Maximal velocity, determines how far waypoints can be apart
a_max Maximal acceleration, not used here.
"""
def __init__(self, params, drone_params, gate_poses):
self.dt = params.dt
self.n_steps = params.n
self.blocking = params.blocking
self.drone_params = drone_params
self.track = SplinedTrack(gate_poses)
# These are some parameters that could be tuned.
# They control how the safety penalty and the relaxed constraints are weighted.
self.nc_weight = 2.0
self.nc_relax_weight = 128.0
self.track_relax_weight = 128.0 # possibly should be the largest of the gains?
self.blocking_weight = 16.0 # increasing gain increases the aggressiveness in the blocking behavior
def init_trajectory(self, i_0, p_0):
"""Initialize Trajectory along the track tangent
Based on the start position p_0, return an initial guess for a trajectory
This is simply a line following the tangent of the track with maximal speed
:param i_0: The index of the drone to initialize the trajectory for.
:param p_0: The current position of the drone
:return: A trajectory of length self.n_steps
"""
v_ego = self.drone_params[i_0]["v_max"]
trajectory = np.zeros(shape=(self.n_steps, 3))
p = np.copy(p_0) # Copy state as it gets modified throughout the loop
for k in range(self.n_steps):
idx, c, t, n, width, height = self.track.track_frame_at(p)
p += self.dt * v_ego * t
p[2] = c[2] # fix trajectory height to center of track
trajectory[k, :] = p
return trajectory
def best_response(self, i_ego, state, trajectories):
"""Based on current trajectories, compute the best-response (BR) of player i_ego.
This is done by solving an optimization problem over the trajectory
p_ego[0], p_ego[1], ..., p_ego[N]
for drone i_ego maximizing the progress along the track while also trying to block the opponent. Here t is the tangent vector that points along the track and N is the horizon length. The resulting optimization is implemented as the following:
minimize -t^T p_ego[N]
subject to
- dynamical constraints
||p_ego[k+1] - p_ego[k]|| <= v_max*dt
- stay-within-track constraints
|n^T (p[k] - c)| <= width,
|v^T (p[k] - c)| <= height,
where v is the track vertical (t x n, where x here represents the cross product) and c is the track center
- non-collision constraints
||p_ego[k] - p_opp[k]|| >= r_coll * 2
The progress along the track is approximated by the progress along the tangent of the last point of the trajectory, i. e., maximize t^T p_ego[k]. The non-collision constraints are non convex and are linearized here. Instead of requiring the ego drone to stay outside a circle, the drone is constrained to be in a half-plane tangential to that circle. In addition to optimizing track progress, the penalty of violating the safety radius is accounted for.
If the blocking term defined in the trajectory parameters is non-zero, we add an additional term to the objective function that incentivizes the drones to slightly adjust their trajectories to block the opponent. Now the objective function is
-t^T p_ego[N] + sum_k( gamma^k p_rel[k]^T n n^T p_rel[k] )
where the sum here is over the full trajectory (1, ..., k, ..., N), gamma is the blocking coefficient (a term that is positive when the opponent is behind the ego agent and zero otherwise), and p_rel = p_ego - p_opp is the relative pose vector between the two drones. This is just a heuristic for "blocking" behavior that is only activated when the ego drone is in front of the opponent.
:param i_ego: The drone index of the ego drone.
:param state: The current state (positions) of the two drones.
:param trajectories: The current trajectories
:return: Optimized trajectory of player i_ego
"""
i_opp = (i_ego + 1) % 2
v_ego = self.drone_params[i_ego]["v_max"]
r_coll_ego = self.drone_params[i_ego]["r_coll"]
r_coll_opp = self.drone_params[i_opp]["r_coll"]
r_safe_ego = self.drone_params[i_ego]["r_safe"]
r_safe_opp = self.drone_params[i_opp]["r_safe"]
d_coll = r_coll_ego + r_coll_opp
d_safe = r_safe_ego + r_safe_opp
p = cp.Variable(shape=(self.n_steps, 3))
# === Dynamical Constraints ===
# ||p_0 - p[0]|| <= v*dt
init_dyn_constraint = cp.SOC(cp.Constant(v_ego * self.dt), cp.Constant(state[i_ego, :]) - p[0, :])
# ||p[k+1] - p[k]|| <= v*dt
dyn_constraints = [init_dyn_constraint] + [
cp.SOC(cp.Constant(v_ego * self.dt), p[k + 1, :] - p[k, :]) for k in range(self.n_steps - 1)]
# === Track Constraints ===
track_constraints = []
track_obj = cp.Constant(0)
track_objective_exp = 0.5 # exponentially decreasing weight
t = np.zeros((self.n_steps, 3))
n = np.zeros((self.n_steps, 3))
for k in range(self.n_steps):
# query track indices at ego position
idx, c, t[k, :], n[k, :], width, height = self.track.track_frame_at(trajectories[i_ego][k, :])
# hortizontal track height constraints
track_constraints.append(n[k, :].T @ p[k, :] - np.dot(n[k, :], c) <= width - r_coll_ego)
track_constraints.append(n[k, :].T @ p[k, :] - np.dot(n[k, :], c) >= -(width - r_coll_ego))
# vertical track height constraints
v = np.cross(t[k, :], n[k, :]) # the vertical direction component of the track
track_constraints.append(v.T @ p[k, :] - v.dot(c) <= height - r_coll_ego)
track_constraints.append(v.T @ p[k, :] - v.dot(c) >= -(height - r_coll_ego))
# track constraints objective
track_obj += (track_objective_exp ** k) * (
cp.pos(n[k, :].T @ p[k, :] - np.dot(n[k, :], c) - (width - r_coll_ego)) +
cp.pos(-(n[k, :].T @ p[k, :] - np.dot(n[k, :], c) + (width - r_coll_ego))))
# === Non-Collision Constraints ===
nc_constraints = []
nc_obj = cp.Constant(0)
nc_relax_obj = cp.Constant(0)
non_collision_objective_exp = 0.5 # exponentially decreasing weight
for k in range(self.n_steps):
p_opp = trajectories[i_opp][k, :]
p_ego = trajectories[i_ego][k, :]
# Compute beta, the normal direction vector pointing from the ego's drone position to the opponent's
beta = p_opp - p_ego
if np.linalg.norm(beta) >= 1e-6:
# Only normalize if norm is large enough
beta /= np.linalg.norm(beta)
# n.T * (p_opp - p_ego) >= d_coll
nc_constraints.append(beta.dot(p_opp) - beta.T @ p[k, :] >= d_coll)
# For normal non-collision objective use safety distance
nc_obj += (non_collision_objective_exp ** k) * cp.pos(d_safe - (beta.dot(p_opp) - beta.T @ p[k, :]))
# For relaxed non-collision objective use collision distance
nc_relax_obj += (non_collision_objective_exp ** k) * cp.pos(d_coll - (beta.dot(p_opp) - beta.T @ p[k, :]))
# === Blocking Heuristic Objective ===
blocking_obj = cp.Constant(0)
blocking_objective_exp = 0.5 # exponentially decreasing weight
leader_term = np.dot((trajectories[i_ego][0, :] - trajectories[i_opp][0, :]), t[0, :])
if ( self.blocking & (leader_term > 0.0) ):
for k in range(self.n_steps):
p_opp = trajectories[i_opp][k, :]
# scale factor for leading robot
p_rel = trajectories[i_ego][k, :] - p_opp
leader_term = np.dot(p_rel, t[k, :]);
gamma = 0.0
if (leader_term > 0):
gamma = 1.0/(leader_term * leader_term)/(k + 1);
else:
gamma = 0.0
# add blocking cost function
blocking_obj += gamma * blocking_objective_exp**k * cp.quad_form(p[k, :] - p_opp, np.outer(n[k, :], n[k, :]))
# === "Win the Race" Objective ===
# Take the tangent t at the last trajectory point
# This serves as an approximation to the total track progress
obj = -t[-1, :].T @ p[-1, :]
# create the problem in cxvpy and solve it
prob = cp.Problem(cp.Minimize(obj + self.nc_weight * nc_obj + self.blocking_weight * blocking_obj), dyn_constraints + track_constraints + nc_constraints)
# try to solve proposed problem
trajectory_result = np.array((self.n_steps, 3))
try:
prob.solve()
# relax track constraints if problem is infeasible
if np.isinf(prob.value):
print("WARN: relaxing track constraints")
# If the problem is not feasible, relax track constraints
# Assert it is indeed an infeasible problem and not unbounded (in which case value is -inf).
# (The dynamical constraints keep the problem bounded.)
assert prob.value >= 0.0
# Solve relaxed problem (track constraint -> track objective)
relaxed_prob = cp.Problem(cp.Minimize(obj + self.nc_weight * nc_obj + self.track_relax_weight * track_obj),
dyn_constraints + nc_constraints)
relaxed_prob.solve()
# relax non-collision constraints if problem is still infeasible
if np.isinf(relaxed_prob.value):
print("WARN: relaxing non collision constraints")
# If the problem is still infeasible, relax non-collision constraints
# Again, assert it is indeed an infeasible problem and not unbounded (in which case value is -inf).
# (The dynamical constraints keep the problem bounded.)
assert relaxed_prob.value >= 0.0
# Solve relaxed problem (non-collision constraint -> non-collision objective)
relaxed_prob = cp.Problem(cp.Minimize(obj + self.nc_weight * nc_obj + self.nc_relax_weight * nc_relax_obj),
dyn_constraints + track_constraints)
relaxed_prob.solve()
assert not np.isinf(relaxed_prob.value)
trajectory_result = p.value
except: # if cvxpy fails, just return the initialized trajectory to do something
print("WARN: cvxpy failre: resorting to initial trajectory (no collision constraints!)")
trajectory_result = trajectories[i_ego]
return trajectory_result
def iterative_br(self, i_ego, state, n_game_iterations=2, n_sqp_iterations=3):
trajectories = [
self.init_trajectory(i, state[i, :]) for i in [0, 1]
]
t0 = time.time()
for i_game in range(n_game_iterations - 1):
for i in [i_ego, (i_ego + 1) % 2]:
for i_sqp in range(n_sqp_iterations - 1):
trajectories[i] = self.best_response(i, state, trajectories)
# one last time for i_ego
for i_sqp in range(n_sqp_iterations):
trajectories[i_ego] = self.best_response(i_ego, state, trajectories)
t1 = time.time()
print('Total IBR solution time: ', t1 - t0)
return trajectories[i_ego]
def truncate(self, p_i, trajectory):
"""
Truncates the trajectory at time k, so that the next point is 'ahead' of p_i.
A point p is ahead of p_i, if p-p_i projected onto the track tangent is positive
:param p_i: The position of the drone
:param trajectory: The trajectory to be truncated
:return: k, the index of the first point ahead of p_i
"""
_, _, t, _, _, _ = self.track.track_frame_at(p_i)
truncate_distance = 0.01 # could be a parameter based on max velocity and computation time
for k in range(self.n_steps):
if t.dot(trajectory[k, :] - p_i) > truncate_distance: # truncate if next waypoint is closer than truncate_distance meters in front of robot
return k, t
return self.n_steps, t
|
AirSim-NeurIPS2019-Drone-Racing/baselines/gtp.py/0
|
{
"file_path": "AirSim-NeurIPS2019-Drone-Racing/baselines/gtp.py",
"repo_id": "AirSim-NeurIPS2019-Drone-Racing",
"token_count": 7424
}
| 80 |
[settings]
include_trailing_comma=True
force_grid_wrap=0
use_parentheses=True
line_length=79
profile=black
; 3 stands for Vertical Hanging Indent, e.g.
; from third_party import (
; lib1,
; lib2,
; lib3,
; )
; docs: https://github.com/timothycrosley/isort#multi-line-output-modes
multi_line_output=3
skip=target
skip_glob=**/gen/*,.venv*/*,venv*/*,**/proto/*,.tox/*, azure-monitor-opentelemetry/azure/monitor/opentelemetry/_vendor/*
known_third_party=opentelemetry,psutil,pytest,redis,redis_opentracing
|
ApplicationInsights-Python/.isort.cfg/0
|
{
"file_path": "ApplicationInsights-Python/.isort.cfg",
"repo_id": "ApplicationInsights-Python",
"token_count": 214
}
| 81 |
# Azure Trusted Research Environment
**Azure TRE documentation site**: <https://microsoft.github.io/AzureTRE/>
## Background
<img align="right" src="./docs/assets/azure-tre-logo.svg" width="33%" />
Across the health industry, be it a pharmaceutical company interrogating clinical trial results, or a public health provider analyzing electronic health records, there is the need to enable researchers, analysts, and developers to work with sensitive data sets.
Trusted Research Environments (TREs) enable organisations to provide research teams secure access to these data sets alongside appropriate tooling to ensure researchers can remain efficient and productive despite the security controls in place.
Further information on TREs in general can be found in many places, one good resource is [HDR UK's website](https://www.hdruk.ac.uk/access-to-health-data/trusted-research-environments/).
The Azure Trusted Research Environment project is an accelerator to assist Microsoft customers and partners who want to build out Trusted Research environments on Azure. This project enables authorized users to deploy and configure secure workspaces and researcher tooling without a dependency on IT teams.
This project is typically implemented alongside a data platform that provides research ready datasets to TRE workspaces.
TREs are not “one size fits all”, hence although the Azure TRE has a number of out of the box features, the project has been built be extensible, and hence tooling and data platform agnostic.
Core features include:
- Self-service workspace management for TRE administrators
- Self-service provisioning of research tooling for research teams
- Package and repository mirroring - PyPi, R-CRAN, Apt and more.
- Extensible architecture - build your own service templates as required
- Microsoft Entra ID integration
- Airlock - import and export
- Cost reporting
- Ready to workspace templates including:
- Restricted with data exfiltration control
- Unrestricted for open data
- Ready to go workspace service templates including:
- Virtual Desktops: Windows, Linux
- AzureML (Jupyter, R Studio, VS Code)
- ML Flow
- Gitea
## Project Status and Support
***This project's code base is still under development and breaking changes will happen. Whilst the maintainers will do our best to minimise disruption to existing deployments, this may not always be possible. Stable releases will be published when the project is more mature.***
The aim is to bring together learnings from past customer engagements where TREs have been built into a single reference solution. This is a solution accelerator aiming to be a great starting point for a customized TRE solution. You're encouraged to download and customize the solution to meet your requirements
This project does not have a dedicated team of maintainers but relies on you and the community to maintain and enhance the solution. Microsoft will on project-to-project basis continue to extend the solution in collaboration with customers and partners. No guarantees can be offered as to response times on issues, feature requests, or to the long term road map for the project.
It is important before deployment of the solution that the [Support Policy](SUPPORT.md) is read and understood.
## Contributing
This project welcomes contributions and suggestions. Most contributions require you to agree to a
Contributor License Agreement (CLA) declaring that you have the right to, and actually do, grant us
the rights to use your contribution. For details, visit [https://cla.opensource.microsoft.com](https://cla.opensource.microsoft.com).
When you submit a pull request, a CLA bot will automatically determine whether you need to provide
a CLA and decorate the PR appropriately (e.g., status check, comment). Simply follow the instructions
provided by the bot. You will only need to do this once across all repos using our CLA.
This project has adopted the [Microsoft Open Source Code of Conduct](https://opensource.microsoft.com/codeofconduct/).
For more information see the [Code of Conduct FAQ](https://opensource.microsoft.com/codeofconduct/faq/) or
contact [[email protected]](mailto:[email protected]) with any additional questions or comments.
Note: maintainers should refer to the [maintainers guide](maintainers.md)
## Trademarks
This project may contain trademarks or logos for projects, products, or services. Authorized use of Microsoft trademarks or logos is subject to and must follow [Microsoft's Trademark & Brand Guidelines](https://www.microsoft.com/en-us/legal/intellectualproperty/trademarks/usage/general).
Use of Microsoft trademarks or logos in modified versions of this project must not cause confusion or imply Microsoft sponsorship.
Any use of third-party trademarks or logos are subject to those third-party's policies.
## Repository structure
```text
├── .github
│ ├── ISSUE_TEMPLATE - Templates for GitHub issues
│ ├── linters - Linter definitions for workflows
│ └── workflows - GitHub Actions workflows (CI/CD)
│
├── devops
│ ├── scripts - DevOps scripts
│ └── terraform - Terraform specific DevOps files/scripts for bootstrapping
│
├── docs - Documentation
│
├── e2e_tests - pytest-based end-to-end tests
│
├── api_app - API source code and docs
│
├── resource_processor - VMSS Porter Runner
│
├── scripts - Utility scripts
│
└── templates
├── core/terraform - Terraform definitions of Azure TRE core resources
├── shared_services - Terraform definitions of shared services
├── workspace_services - Workspace services
└── workspaces - Workspace templates
```
|
AzureTRE/README.md/0
|
{
"file_path": "AzureTRE/README.md",
"repo_id": "AzureTRE",
"token_count": 1468
}
| 82 |
class NoFilesInRequestException(Exception):
pass
class TooManyFilesInRequestException(Exception):
pass
|
AzureTRE/airlock_processor/exceptions/__init__.py/0
|
{
"file_path": "AzureTRE/airlock_processor/exceptions/__init__.py",
"repo_id": "AzureTRE",
"token_count": 32
}
| 83 |
import asyncio
from fastapi import APIRouter, Request
from core import credentials
from models.schemas.status import HealthCheck, ServiceStatus, StatusEnum
from resources import strings
from services.health_checker import create_resource_processor_status, create_state_store_status, create_service_bus_status
from services.logging import logger
router = APIRouter()
@router.get("/health", name=strings.API_GET_HEALTH_STATUS)
async def health_check(request: Request) -> HealthCheck:
# The health endpoint checks the status of key components of the system.
# Note that Resource Processor checks incur Azure management calls, so
# calling this endpoint frequently may result in API throttling.
async with credentials.get_credential_async_context() as credential:
cosmos, sb, rp = await asyncio.gather(
create_state_store_status(),
create_service_bus_status(credential),
create_resource_processor_status(credential)
)
cosmos_status, cosmos_message = cosmos
sb_status, sb_message = sb
rp_status, rp_message = rp
if cosmos_status == StatusEnum.not_ok or sb_status == StatusEnum.not_ok or rp_status == StatusEnum.not_ok:
logger.error(f'Cosmos Status: {cosmos_status}, message: {cosmos_message}')
logger.error(f'Service Bus Status: {sb_status}, message: {sb_message}')
logger.error(f'Resource Processor Status: {rp_status}, message: {rp_message}')
services = [ServiceStatus(service=strings.COSMOS_DB, status=cosmos_status, message=cosmos_message),
ServiceStatus(service=strings.SERVICE_BUS, status=sb_status, message=sb_message),
ServiceStatus(service=strings.RESOURCE_PROCESSOR, status=rp_status, message=rp_message)]
return HealthCheck(services=services)
|
AzureTRE/api_app/api/routes/health.py/0
|
{
"file_path": "AzureTRE/api_app/api/routes/health.py",
"repo_id": "AzureTRE",
"token_count": 622
}
| 84 |
class EntityDoesNotExist(Exception):
"""Raised when entity was not found in database."""
class DuplicateEntity(Exception):
"""Raised when we have an unexpected duplicate (ex. two currents)"""
class EntityVersionExist(Exception):
"""Raised when entity was not found in database."""
class UnableToAccessDatabase(Exception):
"""Raised when we can't access the database"""
class ResourceIsNotDeployed(Exception):
"""Raised when trying to install resource under entity which haven't finalized its deployment."""
class InvalidInput(Exception):
"""Raised when invalid input is received when creating an entity."""
class UserNotAuthorizedToUseTemplate(Exception):
"""Raised when user attempts to use a template they aren't authorized to use"""
class MajorVersionUpdateDenied(Exception):
"""Raised when user attempts to update a resource with a major version."""
class TargetTemplateVersionDoesNotExist(Exception):
"""Raised when user attempts to upgrade a resource to a version which was not registered."""
class VersionDowngradeDenied(Exception):
"""Raised when user attempts to downgrade a resource to a lower version."""
|
AzureTRE/api_app/db/errors.py/0
|
{
"file_path": "AzureTRE/api_app/db/errors.py",
"repo_id": "AzureTRE",
"token_count": 297
}
| 85 |
import uuid
from typing import List, Tuple
from pydantic import parse_obj_as
from db.repositories.resources_history import ResourceHistoryRepository
from models.domain.resource_template import ResourceTemplate
from models.domain.authentication import User
from core import config
from db.errors import EntityDoesNotExist, InvalidInput, ResourceIsNotDeployed
from db.repositories.resource_templates import ResourceTemplateRepository
from db.repositories.resources import ResourceRepository, IS_NOT_DELETED_CLAUSE
from db.repositories.operations import OperationRepository
from models.domain.resource import ResourceType
from models.domain.workspace import Workspace
from models.schemas.resource import ResourcePatch
from models.schemas.workspace import WorkspaceInCreate
from services.cidr_service import generate_new_cidr, is_network_available
class WorkspaceRepository(ResourceRepository):
"""
Repository class representing data storage for Workspaces
"""
# We allow the users some predefined TShirt sizes for the address space
predefined_address_spaces = {"small": 24, "medium": 22, "large": 16}
@classmethod
async def create(cls):
cls = WorkspaceRepository()
await super().create()
return cls
@staticmethod
def workspaces_query_string():
return f'SELECT * FROM c WHERE c.resourceType = "{ResourceType.Workspace}"'
@staticmethod
def active_workspaces_query_string():
return f'SELECT * FROM c WHERE c.resourceType = "{ResourceType.Workspace}" AND {IS_NOT_DELETED_CLAUSE}'
async def get_workspaces(self) -> List[Workspace]:
query = WorkspaceRepository.workspaces_query_string()
workspaces = await self.query(query=query)
return parse_obj_as(List[Workspace], workspaces)
async def get_active_workspaces(self) -> List[Workspace]:
query = WorkspaceRepository.active_workspaces_query_string()
workspaces = await self.query(query=query)
return parse_obj_as(List[Workspace], workspaces)
async def get_deployed_workspace_by_id(self, workspace_id: str, operations_repo: OperationRepository) -> Workspace:
workspace = await self.get_workspace_by_id(workspace_id)
if (not await operations_repo.resource_has_deployed_operation(resource_id=workspace_id)):
raise ResourceIsNotDeployed
return workspace
async def get_workspace_by_id(self, workspace_id: str) -> Workspace:
query = self.workspaces_query_string() + f' AND c.id = "{workspace_id}"'
workspaces = await self.query(query=query)
if not workspaces:
raise EntityDoesNotExist
return parse_obj_as(Workspace, workspaces[0])
# Remove this method once not using last 4 digits for naming - https://github.com/microsoft/AzureTRE/issues/3666
async def is_workspace_with_last_4_id(self, workspace_id: str) -> bool:
query = self.workspaces_query_string() + f' AND ENDSWITH(c.id, "{workspace_id[-4:]}")'
workspaces = await self.query(query=query)
return len(workspaces) > 0
async def create_workspace_item(self, workspace_input: WorkspaceInCreate, auth_info: dict, workspace_owner_object_id: str, user_roles: List[str]) -> Tuple[Workspace, ResourceTemplate]:
full_workspace_id = str(uuid.uuid4())
# Ensure workspace with last four digits of ID does not already exist - remove when https://github.com/microsoft/AzureTRE/issues/3666 is resolved
while await self.is_workspace_with_last_4_id(full_workspace_id):
full_workspace_id = str(uuid.uuid4())
template = await self.validate_input_against_template(workspace_input.templateName, workspace_input, ResourceType.Workspace, user_roles)
# allow for workspace template taking a single address_space or multiple address_spaces
intial_address_space = await self.get_address_space_based_on_size(workspace_input.properties)
address_space_param = {"address_space": intial_address_space}
address_spaces_param = {"address_spaces": [intial_address_space]}
auto_app_registration_param = {"register_aad_application": self.automatically_create_application_registration(workspace_input.properties)}
workspace_owner_param = {"workspace_owner_object_id": self.get_workspace_owner(workspace_input.properties, workspace_owner_object_id)}
# we don't want something in the input to overwrite the system parameters,
# so dict.update can't work. Priorities from right to left.
resource_spec_parameters = {**workspace_input.properties,
**address_space_param,
**address_spaces_param,
**auto_app_registration_param,
**workspace_owner_param,
**auth_info,
**self.get_workspace_spec_params(full_workspace_id)}
workspace = Workspace(
id=full_workspace_id,
templateName=workspace_input.templateName,
templateVersion=template.version,
properties=resource_spec_parameters,
resourcePath=f'/workspaces/{full_workspace_id}',
etag='' # need to validate the model
)
return workspace, template
def get_workspace_owner(self, workspace_properties: dict, workspace_owner_object_id: str) -> str:
# Add the objectId of the user that will become the workspace owner. If it is not present in
# the request, we can assume the logged in user will be WorkspaceOwner
user_defined_workspace_owner_object_id = workspace_properties.get("workspace_owner_object_id")
return workspace_owner_object_id if user_defined_workspace_owner_object_id is None else user_defined_workspace_owner_object_id
def automatically_create_application_registration(self, workspace_properties: dict) -> bool:
return True if ("auth_type" in workspace_properties and workspace_properties["auth_type"] == "Automatic") else False
async def get_address_space_based_on_size(self, workspace_properties: dict):
# Default the address space to 'small' if not supplied.
address_space_size = workspace_properties.get("address_space_size", "small").lower()
# 773 allow custom sized networks to be requested
if (address_space_size == "custom"):
if (await self.validate_address_space(workspace_properties.get("address_space"))):
return workspace_properties.get("address_space")
else:
raise InvalidInput("The custom 'address_space' you requested does not fit in the current network.")
# Default mask is 24 (small)
cidr_netmask = WorkspaceRepository.predefined_address_spaces.get(address_space_size, 24)
return await self.get_new_address_space(cidr_netmask)
# 772 check that the provided address_space is available in the network.
async def validate_address_space(self, address_space):
if (address_space is None):
raise InvalidInput("Missing 'address_space' from properties.")
allocated_networks = [x.properties["address_space"] for x in await self.get_active_workspaces()]
return is_network_available(allocated_networks, address_space)
async def get_new_address_space(self, cidr_netmask: int = 24):
workspaces = await self.get_active_workspaces()
networks = [[x.properties.get("address_space")] for x in workspaces]
networks = networks + [x.properties.get("address_spaces", []) for x in workspaces]
networks = [i for s in networks for i in s if i is not None]
new_address_space = generate_new_cidr(networks, cidr_netmask)
return new_address_space
async def patch_workspace(self, workspace: Workspace, workspace_patch: ResourcePatch, etag: str, resource_template_repo: ResourceTemplateRepository, resource_history_repo: ResourceHistoryRepository, user: User, force_version_update: bool) -> Tuple[Workspace, ResourceTemplate]:
# get the workspace template
workspace_template = await resource_template_repo.get_template_by_name_and_version(workspace.templateName, workspace.templateVersion, ResourceType.Workspace)
return await self.patch_resource(workspace, workspace_patch, workspace_template, etag, resource_template_repo, resource_history_repo, user, force_version_update)
def get_workspace_spec_params(self, full_workspace_id: str):
params = self.get_resource_base_spec_params()
params.update({
"azure_location": config.RESOURCE_LOCATION,
"workspace_id": full_workspace_id[-4:], # TODO: remove with #729
})
return params
|
AzureTRE/api_app/db/repositories/workspaces.py/0
|
{
"file_path": "AzureTRE/api_app/db/repositories/workspaces.py",
"repo_id": "AzureTRE",
"token_count": 3198
}
| 86 |
from enum import Enum
from typing import Optional, Union, List
from pydantic import BaseModel, Field, validator
from models.domain.azuretremodel import AzureTREModel
from models.domain.request_action import RequestAction
from resources import strings
class ResourceType(str, Enum):
"""
Type of resource to deploy
"""
Workspace = strings.RESOURCE_TYPE_WORKSPACE
WorkspaceService = strings.RESOURCE_TYPE_WORKSPACE_SERVICE
UserResource = strings.USER_RESOURCE
SharedService = strings.RESOURCE_TYPE_SHARED_SERVICE
class ResourceHistoryItem(AzureTREModel):
"""
Resource History Item - to preserve history of resource properties
"""
id: str = Field(title="Id", description="GUID identifying the resource request")
resourceId: str = Field(title="Id", description="GUID identifying the resource request")
properties: dict = Field({}, title="Resource template parameters", description="Parameters for the deployment")
isEnabled: bool = True
resourceVersion: int = 0
updatedWhen: float = 0
user: dict = {}
templateVersion: Optional[str] = Field(title="Resource template version", description="The version of the resource template (bundle) to deploy")
class AvailableUpgrade(BaseModel):
version: str
forceUpdateRequired: bool
class Resource(AzureTREModel):
"""
Resource request
"""
id: str = Field(title="Id", description="GUID identifying the resource request")
templateName: str = Field(title="Resource template name", description="The resource template (bundle) to deploy")
templateVersion: str = Field(title="Resource template version", description="The version of the resource template (bundle) to deploy")
properties: dict = Field({}, title="Resource template parameters", description="Parameters for the deployment")
availableUpgrades: Optional[List[AvailableUpgrade]] = Field(title="Available template upgrades", description="Versions of the template that are available for upgrade")
isEnabled: bool = True # Must be set before a resource can be deleted
resourceType: ResourceType
deploymentStatus: Optional[str] = Field(title="Deployment Status", description="Overall deployment status of the resource")
etag: str = Field(title="_etag", description="eTag of the document", alias="_etag")
resourcePath: str = ""
resourceVersion: int = 0
user: dict = {}
updatedWhen: float = 0
def get_resource_request_message_payload(self, operation_id: str, step_id: str, action: RequestAction) -> dict:
payload = {
"operationId": operation_id,
"stepId": step_id,
"action": action,
"id": self.id,
"name": self.templateName,
"version": self.templateVersion,
"parameters": self.properties
}
if self.resourceType == ResourceType.WorkspaceService:
payload["workspaceId"] = self.workspaceId
if self.resourceType == ResourceType.UserResource:
payload["workspaceId"] = self.workspaceId
payload["ownerId"] = self.ownerId
payload["parentWorkspaceServiceId"] = self.parentWorkspaceServiceId
return payload
# SQL API CosmosDB saves etag as an escaped string by default, with no apparent way to change it.
# Removing escaped quotes on pydantic deserialization. https://github.com/microsoft/AzureTRE/issues/1931
@validator("etag", pre=True)
def parse_etag_to_remove_escaped_quotes(cls, value):
return value.replace('\"', '')
class Output(AzureTREModel):
Name: str = Field(title="", description="", alias="name")
Value: Union[list, dict, str] = Field(None, title="", description="", alias="value")
Type: str = Field(title="", description="", alias="type")
|
AzureTRE/api_app/models/domain/resource.py/0
|
{
"file_path": "AzureTRE/api_app/models/domain/resource.py",
"repo_id": "AzureTRE",
"token_count": 1208
}
| 87 |
from typing import List, Optional
from pydantic import BaseModel, Field, Extra
from models.domain.resource import ResourceHistoryItem
class ResourcePatch(BaseModel):
isEnabled: Optional[bool]
properties: Optional[dict]
templateVersion: Optional[str]
class Config:
extra = Extra.forbid
schema_extra = {
"example": {
"isEnabled": False,
"templateVersion": "1.0.1",
"properties": {
"display_name": "the display name",
"description": "a description",
"other_fields": "other properties defined by the resource template"
}
}
}
def get_sample_resource_history(resource_id: str) -> dict:
return {
"id": "abc9ru33-7265-4b5f-9eae-a1a62928772e",
"resourceId": resource_id,
"templateName": "vm",
"templateVersion": "0.1.0",
"properties": {
"display_name": "my user resource",
"description": "some description",
},
"isEnabled": "true",
"resourceVersion": "1",
"updatedWhen": "",
"user": ""
}
class ResourceHistoryInList(BaseModel):
resource_history: List[ResourceHistoryItem] = Field([], title="Resource history")
class Config:
schema_extra = {
"example": {
"resource_history": [
get_sample_resource_history("2fdc9fba-726e-4db6-a1b8-9018a2165748"),
get_sample_resource_history("abcc9fba-726e-4db6-a1b8-9018a2165748")
]
}
}
|
AzureTRE/api_app/models/schemas/resource.py/0
|
{
"file_path": "AzureTRE/api_app/models/schemas/resource.py",
"repo_id": "AzureTRE",
"token_count": 796
}
| 88 |
PONG = "pong"
# API Descriptions
API_GET_HEALTH_STATUS = "Get health status"
API_GET_PING = "Simple endpoint to test calling the API"
API_GET_METADATA = "Get public API metadata (e.g. to support the UI and CLI)"
API_MIGRATE_DATABASE = "Migrate documents in the database"
API_GET_MY_OPERATIONS = "Get Operations that the current user has initiated"
API_GET_ALL_WORKSPACES = "Get all workspaces"
API_GET_WORKSPACE_BY_ID = "Get workspace by Id"
API_GET_WORKSPACE_SCOPE_ID_BY_WORKSPACE_ID = "Get workspace Scope Id by workspace Id"
API_CREATE_WORKSPACE = "Create a workspace"
API_DELETE_WORKSPACE = "Delete workspace"
API_UPDATE_WORKSPACE = "Update an existing workspace"
API_INVOKE_ACTION_ON_WORKSPACE = "Invoke action on a workspace"
API_GET_ALL_WORKSPACE_SERVICES = "Get all workspace services for workspace"
API_GET_WORKSPACE_SERVICE_BY_ID = "Get workspace service by Id"
API_CREATE_WORKSPACE_SERVICE = "Create a workspace service"
API_UPDATE_WORKSPACE_SERVICE = "Update an existing workspace service"
API_DELETE_WORKSPACE_SERVICE = "Delete workspace service"
API_INVOKE_ACTION_ON_WORKSPACE_SERVICE = "Invoke action on a workspace service"
API_GET_RESOURCE_OPERATIONS = "Get all operations for a resource"
API_GET_RESOURCE_OPERATION_BY_ID = "Get a single resource operation by id"
API_GET_RESOURCE_HISTORY = "Get history for a resource"
API_CREATE_USER_RESOURCE = "Create a user resource"
API_GET_MY_USER_RESOURCES = "Get my user resources in the workspace service"
API_GET_USER_RESOURCE = "Get user resource by id"
API_DELETE_USER_RESOURCE = "Delete user resource"
API_UPDATE_USER_RESOURCE = "Update an existing user resource"
API_INVOKE_ACTION_ON_USER_RESOURCE = "Invoke action on a user resource"
API_CREATE_AIRLOCK_REQUEST = "Create an airlock request"
API_GET_AIRLOCK_REQUEST = "Get an airlock request"
API_LIST_AIRLOCK_REQUESTS = "Get all airlock requests for a workspace"
API_SUBMIT_AIRLOCK_REQUEST = "Submit an airlock request"
API_CANCEL_AIRLOCK_REQUEST = "Cancel an airlock request"
API_REVIEW_AIRLOCK_REQUEST = "Review an airlock request"
API_AIRLOCK_REQUEST_LINK = "Get a token to access airlock request"
API_CREATE_AIRLOCK_REVIEW_USER_RESOURCE = "Create an Airlock Review User Resource"
API_CREATE_WORKSPACE_TEMPLATES = "Register workspace template"
API_GET_WORKSPACE_TEMPLATES = "Get workspace templates"
API_GET_WORKSPACE_TEMPLATE_BY_NAME = "Get workspace template by name and optional version"
API_CREATE_WORKSPACE_SERVICE_TEMPLATES = "Register workspace service template"
API_GET_WORKSPACE_SERVICE_TEMPLATES = "Get workspace service templates"
API_GET_WORKSPACE_SERVICE_TEMPLATES_IN_WORKSPACE = "Get workspace service templates (on workspace level)" # only returns templates that the authenticated user is authorized to use
API_GET_WORKSPACE_SERVICE_TEMPLATE_BY_NAME = "Get workspace service template by name and optional version"
API_CREATE_SHARED_SERVICE_TEMPLATES = "Register shared service template"
API_GET_SHARED_SERVICE_TEMPLATES = "Get shared service templates"
API_GET_SHARED_SERVICE_TEMPLATE_BY_NAME = "Get shared service template by name and optional version"
API_GET_ALL_SHARED_SERVICES = "Get all shared services"
API_GET_SHARED_SERVICE_BY_ID = "Get shared service by ID"
API_CREATE_SHARED_SERVICE = "Create a shared service"
API_UPDATE_SHARED_SERVICE = "Update an existing shared service"
API_DELETE_SHARED_SERVICE = "Delete shared service"
API_INVOKE_ACTION_ON_SHARED_SERVICE = "Invoke action on a shared service"
API_CREATE_USER_RESOURCE_TEMPLATES = "Register user resource template"
API_GET_USER_RESOURCE_TEMPLATES = "Get user resource templates applicable to the workspace service template"
API_GET_USER_RESOURCE_TEMPLATES_IN_WORKSPACE = "Get user resource templates applicable to the workspace service template (on workspace level)" # only returns templates that the authenticated user is authorized to use
API_GET_USER_RESOURCE_TEMPLATE_BY_NAME = "Get user resource template by name and workspace service and optional version"
# cost report
API_GET_COSTS = "Get overall costs"
API_GET_WORKSPACE_COSTS = "Get workspace costs"
API_GET_COSTS_MAX_TIME_PERIOD = "The time period for pulling the data cannot exceed 1 year"
API_GET_COSTS_TO_DATE_NEED_TO_BE_LATER_THEN_FROM_DATE = "to_date needs to be later than from_date"
API_GET_COSTS_FROM_DATE_NEED_TO_BE_BEFORE_TO_DATE = "from_date needs to be before to_date"
API_GET_COSTS_SUBSCRIPTION_NOT_SUPPORTED = "Azure subscription doesn't support cost management"
API_GET_COSTS_TOO_MANY_REQUESTS = "Too many requests to Azure cost management API. Please retry."
API_GET_COSTS_SERVICE_UNAVAILABLE = "Azure cost management API is temporarily unavailable. Please retry."
API_GET_COSTS_INTERNAL_SERVER_ERROR = "Failed to query Azure TRE costs."
# State store status
OK = "OK"
NOT_OK = "Not OK"
COSMOS_DB = "Cosmos DB"
UNABLE_TO_GET_STATE_STORE_CLIENT = "Unable to get state store client"
STATE_STORE_ENDPOINT_NOT_RESPONDING = "State Store endpoint is not responding"
STATE_STORE_ENDPOINT_NOT_ACCESSIBLE = "State Store endpoint is not accessible"
UNSPECIFIED_ERROR = "Unspecified error"
# Service bus status
SERVICE_BUS = "Service Bus"
SERVICE_BUS_NOT_RESPONDING = "Service Bus is not responding"
SERVICE_BUS_AUTHENTICATION_ERROR = "Cannot authenticate Service Bus"
# Resource processor status
RESOURCE_PROCESSOR = "Resource Processor"
RESOURCE_PROCESSOR_GENERAL_ERROR_MESSAGE = "Resource Processor is not responding"
RESOURCE_PROCESSOR_HEALTHY_MESSAGE = "HealthState/healthy"
# Error strings
ACCESS_APP_IS_MISSING_ROLE = "The App is missing role"
ACCESS_PLEASE_SUPPLY_CLIENT_ID = "Please supply the client_id for the AAD application"
ACCESS_UNABLE_TO_GET_INFO_FOR_APP = "Unable to get app info for app:"
ACCESS_UNABLE_TO_GET_ROLE_ASSIGNMENTS_FOR_USER = "Unable to get role assignments for user"
ACCESS_UNABLE_TO_GET_ACCOUNT_TYPE = "Unable to look up account type"
ACCESS_UNHANDLED_ACCOUNT_TYPE = "Unhandled account type"
ACCESS_USER_IS_NOT_OWNER_OR_RESEARCHER = "Workspace Researcher or Owner rights are required"
ACCESS_USER_IS_NOT_OWNER = "Workspace Owner rights are required"
ACCESS_USER_DOES_NOT_HAVE_REQUIRED_ROLE = "The user is missing a required role"
AUTH_NOT_ASSIGNED_TO_ADMIN_ROLE = "Not assigned to admin role"
AUTH_COULD_NOT_VALIDATE_CREDENTIALS = "Could not validate credentials"
AUTH_CONFIGURATION_NOT_AVAILABLE_FOR_WORKSPACE = "Auth configuration not available for workspace"
AUTH_UNABLE_TO_VALIDATE_TOKEN = "Unable to decode or validate token"
INVALID_AUTH_PROVIDER = "Invalid authentication provider"
INVALID_SIGNATURE = "Invalid token signature"
EXPIRED_SIGNATURE = "Expired token signature"
INVALID_TOKEN = "Invalid token"
UNABLE_TO_REPLACE_CURRENT_TEMPLATE = "Unable to replace the existing 'current' template with this name"
UNABLE_TO_PROCESS_REQUEST = "Unable to process request"
USER_RESOURCE_DOES_NOT_EXIST = "User Resource does not exist"
USER_RESOURCES_NEED_TO_BE_DELETED_BEFORE_WORKSPACE = "All user resources need to be deleted before you can delete the workspace service"
USER_RESOURCE_NEEDS_TO_BE_DISABLED_BEFORE_DELETION = "The resource needs to be disabled before you can delete it"
WORKSPACE_DOES_NOT_EXIST = "Workspace does not exist"
WORKSPACE_IS_NOT_DEPLOYED = "Workspace is not deployed."
WORKSPACE_NEEDS_TO_BE_DISABLED_BEFORE_DELETION = "The workspace needs to be disabled before you can delete it"
WORKSPACE_SERVICE_DOES_NOT_EXIST = "Workspace service does not exist"
WORKSPACE_SERVICE_IS_NOT_DEPLOYED = "Workspace service is not deployed."
WORKSPACE_SERVICE_NEEDS_TO_BE_DISABLED_BEFORE_DELETION = "The workspace service needs to be disabled before you can delete it"
WORKSPACE_SERVICES_NEED_TO_BE_DELETED_BEFORE_WORKSPACE = "All workspace services need to be deleted before you can delete the workspace"
WORKSPACE_DOES_NOT_HAVE_ADDRESS_SPACES_PROPERTY = "Workspace does not have address_spaces property"
WORKSPACE_TEMPLATE_VERSION_EXISTS = "A template with this version already exists"
OPERATION_DOES_NOT_EXIST = "Operation does not exist"
CUSTOM_ACTION_NOT_DEFINED = "The specified custom action isn't defined in the targeted resource."
CUSTOM_ACTIONS_DO_NOT_EXIST = "The resource being targeted does not implement any custom actions."
WORKSPACE_SERVICE_TEMPLATE_DOES_NOT_EXIST = "Could not retrieve the workspace service template specified"
TEMPLATE_DOES_NOT_EXIST = "Could not retrieve the template with this name, or name-version pair"
NO_UNIQUE_CURRENT_FOR_TEMPLATE = "The template has multiple 'current' versions"
SHARED_SERVICE_DOES_NOT_EXIST = "Shared service does not exist"
SHARED_SERVICE_NEEDS_TO_BE_DISABLED_BEFORE_DELETION = "Shared service needs to be disabled before you can delete it"
SHARED_SERVICE_TEMPLATE_DOES_NOT_EXIST = "Could not retrieve the workspace service template specified"
SHARED_SERVICE_TEMPLATE_VERSION_EXISTS = "A template with this version already exists"
ETAG_CONFLICT = "This document has been modified by another user or process since you last retrieved it. Please get the document again and retry."
SWAGGER_DISABLED = "Swagger is disabled. Set 'ENABLE_SWAGGER' to true in order to access Swagger."
# Resource Status
RESOURCE_STATUS_AWAITING_DEPLOYMENT = "awaiting_deployment"
RESOURCE_STATUS_DEPLOYING = "deploying"
RESOURCE_STATUS_DEPLOYED = "deployed"
RESOURCE_STATUS_DEPLOYMENT_FAILED = "deployment_failed"
RESOURCE_STATUS_AWAITING_DELETION = "awaiting_deletion"
RESOURCE_STATUS_DELETING = "deleting"
RESOURCE_STATUS_DELETED = "deleted"
RESOURCE_STATUS_DELETING_FAILED = "deleting_failed"
RESOURCE_STATUS_AWAITING_UPDATE = "awaiting_update"
RESOURCE_STATUS_UPDATING = "updating"
RESOURCE_STATUS_UPDATED = "updated"
RESOURCE_STATUS_UPDATING_FAILED = "updating_failed"
# Resource Action Status
RESOURCE_STATUS_AWAITING_ACTION = "awaiting_action"
RESOURCE_ACTION_STATUS_INVOKING = "invoking_action"
RESOURCE_ACTION_STATUS_SUCCEEDED = "action_succeeded"
RESOURCE_ACTION_STATUS_FAILED = "action_failed"
# Pipeline (multi-step) deployments
RESOURCE_ACTION_STATUS_PIPELINE_RUNNING = "pipeline_running"
RESOURCE_ACTION_STATUS_PIPELINE_FAILED = "pipeline_failed"
RESOURCE_ACTION_STATUS_PIPELINE_SUCCEEDED = "pipeline_succeeded"
# Resource Type
RESOURCE_TYPE_WORKSPACE = "workspace"
RESOURCE_TYPE_WORKSPACE_SERVICE = "workspace-service"
USER_RESOURCE = "user-resource"
RESOURCE_TYPE_SHARED_SERVICE = "shared-service"
# Airlock Resource Type
AIRLOCK_RESOURCE_TYPE_REQUEST = "airlock-request"
AIRLOCK_RESOURCE_TYPE_REVIEW = "airlock-review"
# Airlock Resource Status
AIRLOCK_RESOURCE_STATUS_DRAFT = "draft"
AIRLOCK_RESOURCE_STATUS_SUBMITTED = "submitted"
AIRLOCK_RESOURCE_STATUS_INREVIEW = "in_review"
AIRLOCK_RESOURCE_STATUS_APPROVAL_INPROGRESS = "approval_in_progress"
AIRLOCK_RESOURCE_STATUS_APPROVED = "approved"
AIRLOCK_RESOURCE_STATUS_REJECTION_INPROGRESS = "rejection_in_progress"
AIRLOCK_RESOURCE_STATUS_REJECTED = "rejected"
AIRLOCK_RESOURCE_STATUS_CANCELLED = "cancelled"
AIRLOCK_RESOURCE_STATUS_BLOCKING_INPROGRESS = "blocking_in_progress"
AIRLOCK_RESOURCE_STATUS_BLOCKED = "blocked_by_scan"
AIRLOCK_RESOURCE_STATUS_FAILED = "failed"
# Airlock Request Types
AIRLOCK_REQUEST_TYPE_IMPORT = "import"
AIRLOCK_REQUEST_TYPE_EXPORT = "export"
# Airlock Messages
AIRLOCK_REQUEST_DOES_NOT_EXIST = "Airlock request does not exist"
AIRLOCK_REQUEST_ILLEGAL_STATUS_CHANGE = "Airlock request status change was illegal"
AIRLOCK_REQUEST_IN_PROGRESS = "Airlock request is being processed, please try again later."
AIRLOCK_REQUEST_IS_CANCELED = "Airlock request was cancelled."
AIRLOCK_REQUEST_UNACCESSIBLE = "Airlock request is in invalid status: rejected, blocked or failed."
AIRLOCK_REQUEST_INVALID_STATUS = "Airlock request status is unknown."
AIRLOCK_UNAUTHORIZED_TO_SA = "User is unauthorized to access airlock request files in its current status."
AIRLOCK_NOT_ENABLED_IN_WORKSPACE = "Airlock is not enabled in this workspace."
AIRLOCK_NO_RESEARCHER_EMAIL = "There are no Workspace Researchers with an email address."
AIRLOCK_NO_AIRLOCK_MANAGER_EMAIL = "There are no Airlock Managers with an email address."
# Airlock Actions
AIRLOCK_ACTION_REVIEW = "review"
AIRLOCK_ACTION_CANCEL = "cancel"
AIRLOCK_ACTION_SUBMIT = "submit"
# Airlock Review Decisions
AIRLOCK_REVIEW_DECISION_APPROVED = "approved"
AIRLOCK_REVIEW_DECISION_REJECTED = "rejected"
# Deployments
RESOURCE_STATUS_AWAITING_DEPLOYMENT_MESSAGE = "This resource is waiting to be deployed"
RESOURCE_STATUS_AWAITING_UPDATE_MESSAGE = "This resource is waiting to be updated"
RESOURCE_STATUS_AWAITING_DELETION_MESSAGE = "This resource is waiting to be deleted"
RESOURCE_STATUS_AWAITING_ACTION_MESSAGE = "This resource is waiting for an action to be invoked"
# Service bus
SERVICE_BUS_GENERAL_ERROR_MESSAGE = "Service bus failure"
DEPLOYMENT_STATUS_MESSAGE_FORMAT_INCORRECT = "Service bus message is not formatted correctly"
DEPLOYMENT_STATUS_ID_NOT_FOUND = "Service bus message refers to resource id = {} which does not exist"
STEP_RESULT_MESSAGE_FORMAT_INCORRECT = "Service bus message of step result is not formatted correctly"
STEP_RESULT_ID_NOT_FOUND = "Service bus message of step result refers to resource id = {} which does not exist"
STEP_RESULT_MESSAGE_STATUS_DOES_NOT_MATCH = "Service bus message of step result current status does not match the one in state store for request id = {}, status in step result = {}, status in state store = {}"
STEP_RESULT_MESSAGE_INVALID_STATUS = "Service bus message has invalid status change request for request id = {}, current status is = {}, new status is = {}"
# Event grid
EVENT_GRID_GENERAL_ERROR_MESSAGE = "Event grid failure"
# Workspace creation validation
MISSING_REQUIRED_PARAMETERS = "Missing required parameters"
INVALID_EXTRA_PARAMETER = "Invalid extra parameters"
PARAMETERS_WITH_WRONG_TYPE = "Parameters with wrong type"
# Value that a sensitive is replaced with in Cosmos
REDACTED_SENSITIVE_VALUE = "REDACTED"
|
AzureTRE/api_app/resources/strings.py/0
|
{
"file_path": "AzureTRE/api_app/resources/strings.py",
"repo_id": "AzureTRE",
"token_count": 4629
}
| 89 |
from datetime import datetime, timedelta
from services.logging import logger
from azure.storage.blob import generate_container_sas, ContainerSasPermissions, BlobServiceClient
from fastapi import HTTPException, status
from core import config, credentials
from models.domain.airlock_request import AirlockRequest, AirlockRequestStatus, AirlockRequestType, AirlockReviewUserResource, AirlockReviewDecision, AirlockActions, AirlockFile, AirlockReview
from models.domain.authentication import User
from models.domain.workspace import Workspace
from models.domain.user_resource import UserResource
from models.domain.operation import Operation
from models.domain.resource import ResourceType
from models.domain.workspace_service import WorkspaceService
from models.schemas.airlock_request import AirlockReviewInCreate
from models.schemas.airlock_request import AirlockRequestWithAllowedUserActions
from models.schemas.resource import ResourcePatch
from typing import Tuple, List, Optional
from models.schemas.user_resource import UserResourceInCreate
from services.azure_resource_status import get_azure_resource_status
from services.authentication import get_access_service
from resources import strings, constants
from api.routes.resource_helpers import save_and_deploy_resource, send_uninstall_message, update_user_resource
from db.repositories.user_resources import UserResourceRepository
from db.repositories.workspace_services import WorkspaceServiceRepository
from db.repositories.operations import OperationRepository
from db.repositories.airlock_requests import AirlockRequestRepository
from db.repositories.resource_templates import ResourceTemplateRepository
from db.repositories.resources_history import ResourceHistoryRepository
from collections import defaultdict
from event_grid.event_sender import send_status_changed_event, send_airlock_notification_event
STORAGE_ENDPOINT = config.STORAGE_ENDPOINT_SUFFIX
def get_account_by_request(airlock_request: AirlockRequest, workspace: Workspace) -> str:
tre_id = config.TRE_ID
short_workspace_id = workspace.id[-4:]
if airlock_request.type == constants.IMPORT_TYPE:
if airlock_request.status == AirlockRequestStatus.Draft:
return constants.STORAGE_ACCOUNT_NAME_IMPORT_EXTERNAL.format(tre_id)
elif airlock_request.status == AirlockRequestStatus.Submitted:
return constants.STORAGE_ACCOUNT_NAME_IMPORT_INPROGRESS.format(tre_id)
elif airlock_request.status == AirlockRequestStatus.InReview:
return constants.STORAGE_ACCOUNT_NAME_IMPORT_INPROGRESS.format(tre_id)
elif airlock_request.status == AirlockRequestStatus.Approved:
return constants.STORAGE_ACCOUNT_NAME_IMPORT_APPROVED.format(short_workspace_id)
elif airlock_request.status == AirlockRequestStatus.Rejected:
return constants.STORAGE_ACCOUNT_NAME_IMPORT_REJECTED.format(tre_id)
elif airlock_request.status == AirlockRequestStatus.Blocked:
return constants.STORAGE_ACCOUNT_NAME_IMPORT_BLOCKED.format(tre_id)
else:
if airlock_request.status == AirlockRequestStatus.Draft:
return constants.STORAGE_ACCOUNT_NAME_EXPORT_INTERNAL.format(short_workspace_id)
elif airlock_request.status in AirlockRequestStatus.Submitted:
return constants.STORAGE_ACCOUNT_NAME_EXPORT_INPROGRESS.format(short_workspace_id)
elif airlock_request.status == AirlockRequestStatus.InReview:
return constants.STORAGE_ACCOUNT_NAME_EXPORT_INPROGRESS.format(short_workspace_id)
elif airlock_request.status == AirlockRequestStatus.Approved:
return constants.STORAGE_ACCOUNT_NAME_EXPORT_APPROVED.format(tre_id)
elif airlock_request.status == AirlockRequestStatus.Rejected:
return constants.STORAGE_ACCOUNT_NAME_EXPORT_REJECTED.format(short_workspace_id)
elif airlock_request.status == AirlockRequestStatus.Blocked:
return constants.STORAGE_ACCOUNT_NAME_EXPORT_BLOCKED.format(short_workspace_id)
def validate_user_allowed_to_access_storage_account(user: User, airlock_request: AirlockRequest):
allowed_roles = []
if (airlock_request.status == AirlockRequestStatus.InReview):
allowed_roles = ["AirlockManager", "WorkspaceOwner"]
else:
allowed_roles = ["WorkspaceResearcher", "WorkspaceOwner"]
if not _user_has_one_of_roles(user=user, roles=allowed_roles):
raise HTTPException(status_code=status.HTTP_403_FORBIDDEN, detail=strings.AIRLOCK_UNAUTHORIZED_TO_SA)
return
def validate_request_status(airlock_request: AirlockRequest):
if airlock_request.status in [AirlockRequestStatus.ApprovalInProgress,
AirlockRequestStatus.RejectionInProgress,
AirlockRequestStatus.BlockingInProgress]:
raise HTTPException(status_code=status.HTTP_400_BAD_REQUEST, detail=strings.AIRLOCK_REQUEST_IN_PROGRESS)
elif airlock_request.status == AirlockRequestStatus.Cancelled:
raise HTTPException(status_code=status.HTTP_400_BAD_REQUEST, detail=strings.AIRLOCK_REQUEST_IS_CANCELED)
elif airlock_request.status in [AirlockRequestStatus.Failed,
AirlockRequestStatus.Rejected,
AirlockRequestStatus.Blocked]:
raise HTTPException(status_code=status.HTTP_400_BAD_REQUEST, detail=strings.AIRLOCK_REQUEST_UNACCESSIBLE)
else:
return
def get_required_permission(airlock_request: AirlockRequest) -> ContainerSasPermissions:
if airlock_request.status == AirlockRequestStatus.Draft:
return ContainerSasPermissions(read=True, write=True, list=True, delete=True)
else:
return ContainerSasPermissions(read=True, list=True)
def get_airlock_request_container_sas_token(account_name: str,
airlock_request: AirlockRequest):
blob_service_client = BlobServiceClient(account_url=get_account_url(account_name),
credential=credentials.get_credential())
start = datetime.utcnow() - timedelta(minutes=15)
expiry = datetime.utcnow() + timedelta(hours=config.AIRLOCK_SAS_TOKEN_EXPIRY_PERIOD_IN_HOURS)
try:
udk = blob_service_client.get_user_delegation_key(key_start_time=start, key_expiry_time=expiry)
except Exception:
raise Exception(f"Failed getting user delegation key, has the API identity been granted 'Storage Blob Data Contributor' access to the storage account {account_name}?")
required_permission = get_required_permission(airlock_request)
token = generate_container_sas(container_name=airlock_request.id,
account_name=account_name,
user_delegation_key=udk,
permission=required_permission,
start=start,
expiry=expiry)
return "https://{}.blob.{}/{}?{}" \
.format(account_name, STORAGE_ENDPOINT, airlock_request.id, token)
def get_account_url(account_name: str) -> str:
return f"https://{account_name}.blob.{STORAGE_ENDPOINT}/"
async def review_airlock_request(airlock_review_input: AirlockReviewInCreate, airlock_request: AirlockRequest, user: User, workspace: Workspace,
airlock_request_repo: AirlockRequestRepository, user_resource_repo: UserResourceRepository,
workspace_service_repo, operation_repo: WorkspaceServiceRepository, resource_template_repo: ResourceTemplateRepository,
resource_history_repo: ResourceHistoryRepository) -> AirlockRequest:
airlock_review = airlock_request_repo.create_airlock_review_item(airlock_review_input, user)
# Store review with new status in cosmos, and send status_changed event
if airlock_review.reviewDecision.value == AirlockReviewDecision.Approved:
review_status = AirlockRequestStatus.ApprovalInProgress
elif airlock_review.reviewDecision.value == AirlockReviewDecision.Rejected:
review_status = AirlockRequestStatus.RejectionInProgress
updated_airlock_request = await update_and_publish_event_airlock_request(airlock_request=airlock_request,
airlock_request_repo=airlock_request_repo, updated_by=user,
workspace=workspace, new_status=review_status,
airlock_review=airlock_review)
# If there was a VM created for the request, clean it up as it will no longer be needed
# In this request, we aren't returning the operations for clean up of VMs,
# however the operations still will be saved in the DB and displayed on the UI as normal.
_ = await delete_all_review_user_resources(
airlock_request=airlock_request,
user_resource_repo=user_resource_repo,
workspace_service_repo=workspace_service_repo,
resource_template_repo=resource_template_repo,
operations_repo=operation_repo,
resource_history_repo=resource_history_repo,
user=user
)
return updated_airlock_request
def get_airlock_container_link(airlock_request: AirlockRequest, user, workspace):
validate_user_allowed_to_access_storage_account(user, airlock_request)
validate_request_status(airlock_request)
account_name: str = get_account_by_request(airlock_request, workspace)
return get_airlock_request_container_sas_token(account_name, airlock_request)
async def create_review_vm(airlock_request: AirlockRequest, user: User, workspace: Workspace, user_resource_repo: UserResourceRepository, workspace_service_repo: WorkspaceServiceRepository,
operation_repo: OperationRepository, airlock_request_repo: AirlockRequestRepository, resource_template_repo: ResourceTemplateRepository, resource_history_repo: ResourceHistoryRepository) -> Tuple[UserResource, Operation]:
if airlock_request.type == AirlockRequestType.Import:
config = workspace.properties["airlock_review_config"]["import"]
review_workspace_id = config["import_vm_workspace_id"]
review_workspace_service_id = config["import_vm_workspace_service_id"]
user_resource_template_name = config["import_vm_user_resource_template_name"]
else:
assert airlock_request.type == AirlockRequestType.Export
config = workspace.properties["airlock_review_config"]["export"]
review_workspace_id = workspace.id
review_workspace_service_id = config["export_vm_workspace_service_id"]
user_resource_template_name = config["export_vm_user_resource_template_name"]
# Check whether the user already has a healthy VM deployed for the request
resource_already_exists = user.id in airlock_request.reviewUserResources
if resource_already_exists:
existing_resource = airlock_request.reviewUserResources[user.id]
existing_resource = await user_resource_repo.get_user_resource_by_id(workspace_id=existing_resource.workspaceId, service_id=existing_resource.workspaceServiceId, resource_id=existing_resource.userResourceId)
logger.info("User already has an existing review resource")
await _handle_existing_review_resource(existing_resource, user, user_resource_repo, workspace_service_repo, operation_repo, resource_template_repo, resource_history_repo)
# Create the VM
user_resource, operation = await _deploy_vm(airlock_request, user, workspace, review_workspace_id, review_workspace_service_id, user_resource_template_name, user_resource_repo, workspace_service_repo, operation_repo, resource_template_repo, resource_history_repo)
# Update the Airlock Request with the information on the VM
updated_resource = await update_and_publish_event_airlock_request(
airlock_request,
airlock_request_repo,
user,
workspace,
review_user_resource=AirlockReviewUserResource(
workspaceId=review_workspace_id,
workspaceServiceId=review_workspace_service_id,
userResourceId=user_resource.id
))
logger.info(f"Airlock Request {updated_resource.id} updated to include {updated_resource.reviewUserResources}")
return updated_resource, operation
async def _deploy_vm(airlock_request: AirlockRequest, user: User, workspace: Workspace, review_workspace_id: str, review_workspace_service_id: str, user_resource_template_name: str,
user_resource_repo: UserResourceRepository, workspace_service_repo: WorkspaceServiceRepository, operation_repo: OperationRepository,
resource_template_repo: ResourceTemplateRepository, resource_history_repo: ResourceHistoryRepository):
logger.info(f"Creating review VM in workspace:{review_workspace_id} service:{review_workspace_service_id} using template:{user_resource_template_name}")
workspace_service = await workspace_service_repo.get_workspace_service_by_id(workspace_id=review_workspace_id, service_id=review_workspace_service_id)
airlock_request_sas_url = get_airlock_container_link(airlock_request, user, workspace)
user_resource_create = UserResourceInCreate(
templateName=user_resource_template_name,
properties={
"display_name": "Airlock Review VM",
"description": f"{airlock_request.title} (ID {airlock_request.id})",
"airlock_request_sas_url": airlock_request_sas_url
}
)
user_resource, resource_template = await user_resource_repo.create_user_resource_item(
user_resource_create, review_workspace_id, review_workspace_service_id, workspace_service.templateName, user.id, user.roles)
operation = await save_and_deploy_resource(
resource=user_resource,
resource_repo=user_resource_repo,
operations_repo=operation_repo,
resource_template_repo=resource_template_repo,
resource_history_repo=resource_history_repo,
user=user,
resource_template=resource_template)
return user_resource, operation
async def _handle_existing_review_resource(existing_resource: AirlockReviewUserResource, user: User, user_resource_repo: UserResourceRepository, workspace_service_repo: WorkspaceServiceRepository,
operation_repo: OperationRepository, resource_template_repo: ResourceTemplateRepository, resource_history_repo: ResourceHistoryRepository):
# Is the existing resource enabled, deployed, and can we get its power state information
if existing_resource.isEnabled and existing_resource.deploymentStatus == "deployed" and 'azure_resource_id' in existing_resource.properties:
resource_status = get_azure_resource_status(existing_resource.properties['azure_resource_id'])
if "powerState" in resource_status and resource_status["powerState"] == "VM running":
logger.info("Existing review resource is enabled, in a succeeded state and running. Returning a conflict error.")
raise HTTPException(status_code=status.HTTP_409_CONFLICT,
detail="A healthy review resource is already deployed for the current user. "
"You may only have a single review resource.")
# If it wasn't healthy or running, we'll delete the existing resource if not already deleted, and then create a new one
logger.info("Existing review resource is in an unhealthy state.")
if existing_resource.deploymentStatus != "deleted":
logger.info("Deleting existing user resource...")
_ = await delete_review_user_resource(
user_resource=existing_resource,
user_resource_repo=user_resource_repo,
workspace_service_repo=workspace_service_repo,
resource_template_repo=resource_template_repo,
operations_repo=operation_repo,
resource_history_repo=resource_history_repo,
user=user
)
async def save_and_publish_event_airlock_request(airlock_request: AirlockRequest, airlock_request_repo: AirlockRequestRepository, user: User, workspace: Workspace):
# First check we have some email addresses so we can notify people.
access_service = get_access_service()
role_assignment_details = access_service.get_workspace_role_assignment_details(workspace)
check_email_exists(role_assignment_details)
try:
logger.debug(f"Saving airlock request item: {airlock_request.id}")
airlock_request.updatedBy = user
airlock_request.updatedWhen = get_timestamp()
await airlock_request_repo.save_item(airlock_request)
except Exception:
logger.exception(f'Failed saving airlock request {airlock_request}')
raise HTTPException(status_code=status.HTTP_503_SERVICE_UNAVAILABLE, detail=strings.STATE_STORE_ENDPOINT_NOT_RESPONDING)
try:
logger.debug(f"Sending status changed event for airlock request item: {airlock_request.id}")
await send_status_changed_event(airlock_request=airlock_request, previous_status=None)
await send_airlock_notification_event(airlock_request, workspace, role_assignment_details)
except Exception:
await airlock_request_repo.delete_item(airlock_request.id)
logger.exception("Failed sending status_changed message")
raise HTTPException(status_code=status.HTTP_503_SERVICE_UNAVAILABLE, detail=strings.EVENT_GRID_GENERAL_ERROR_MESSAGE)
async def update_and_publish_event_airlock_request(
airlock_request: AirlockRequest,
airlock_request_repo: AirlockRequestRepository,
updated_by: User,
workspace: Workspace,
new_status: Optional[AirlockRequestStatus] = None,
request_files: Optional[List[AirlockFile]] = None,
status_message: Optional[str] = None,
airlock_review: Optional[AirlockReview] = None,
review_user_resource: Optional[AirlockReviewUserResource] = None) -> AirlockRequest:
try:
logger.debug(f"Updating airlock request item: {airlock_request.id}")
updated_airlock_request = await airlock_request_repo.update_airlock_request(
original_request=airlock_request,
updated_by=updated_by,
new_status=new_status,
request_files=request_files,
status_message=status_message,
airlock_review=airlock_review,
review_user_resource=review_user_resource)
except Exception as e:
logger.exception(f'Failed updating airlock_request item {airlock_request}')
# If the validation failed, the error was not related to the saving itself
if hasattr(e, 'status_code'):
if e.status_code == 400: # type: ignore
raise HTTPException(status_code=status.HTTP_400_BAD_REQUEST, detail=strings.AIRLOCK_REQUEST_ILLEGAL_STATUS_CHANGE)
raise HTTPException(status_code=status.HTTP_503_SERVICE_UNAVAILABLE, detail=strings.STATE_STORE_ENDPOINT_NOT_RESPONDING)
if not new_status:
logger.debug(f"Skipping sending 'status changed' event for airlock request item: {airlock_request.id} - there is no status change")
return updated_airlock_request
try:
logger.debug(f"Sending status changed event for airlock request item: {airlock_request.id}")
await send_status_changed_event(airlock_request=updated_airlock_request, previous_status=airlock_request.status)
access_service = get_access_service()
role_assignment_details = access_service.get_workspace_role_assignment_details(workspace)
await send_airlock_notification_event(updated_airlock_request, workspace, role_assignment_details)
return updated_airlock_request
except Exception:
logger.exception("Failed sending status_changed message")
raise HTTPException(status_code=status.HTTP_503_SERVICE_UNAVAILABLE, detail=strings.EVENT_GRID_GENERAL_ERROR_MESSAGE)
def get_timestamp() -> float:
return datetime.utcnow().timestamp()
def check_email_exists(role_assignment_details: defaultdict(list)):
if "WorkspaceResearcher" not in role_assignment_details or not role_assignment_details["WorkspaceResearcher"]:
logger.error('Creating an airlock request but the researcher does not have an email address.')
raise HTTPException(status_code=status.HTTP_417_EXPECTATION_FAILED, detail=strings.AIRLOCK_NO_RESEARCHER_EMAIL)
if "AirlockManager" not in role_assignment_details or not role_assignment_details["AirlockManager"]:
logger.error('Creating an airlock request but the airlock manager does not have an email address.')
raise HTTPException(status_code=status.HTTP_417_EXPECTATION_FAILED, detail=strings.AIRLOCK_NO_AIRLOCK_MANAGER_EMAIL)
async def get_airlock_requests_by_user_and_workspace(user: User, workspace: Workspace, airlock_request_repo: AirlockRequestRepository,
creator_user_id: Optional[str] = None, type: Optional[AirlockRequestType] = None, status: Optional[AirlockRequestStatus] = None,
order_by: Optional[str] = None, order_ascending=True) -> List[AirlockRequest]:
return await airlock_request_repo.get_airlock_requests(workspace_id=workspace.id, creator_user_id=creator_user_id, type=type, status=status,
order_by=order_by, order_ascending=order_ascending)
def get_allowed_actions(request: AirlockRequest, user: User, airlock_request_repo: AirlockRequestRepository) -> AirlockRequestWithAllowedUserActions:
allowed_actions = []
can_review_request = airlock_request_repo.validate_status_update(request.status, AirlockRequestStatus.ApprovalInProgress)
can_cancel_request = airlock_request_repo.validate_status_update(request.status, AirlockRequestStatus.Cancelled)
can_submit_request = airlock_request_repo.validate_status_update(request.status, AirlockRequestStatus.Submitted)
if can_review_request and "AirlockManager" in user.roles:
allowed_actions.append(AirlockActions.Review)
if can_cancel_request and ("WorkspaceOwner" in user.roles or "WorkspaceResearcher" in user.roles):
allowed_actions.append(AirlockActions.Cancel)
if can_submit_request and ("WorkspaceOwner" in user.roles or "WorkspaceResearcher" in user.roles):
allowed_actions.append(AirlockActions.Submit)
return allowed_actions
def enrich_requests_with_allowed_actions(requests: List[AirlockRequest], user: User, airlock_request_repo: AirlockRequestRepository) -> List[AirlockRequestWithAllowedUserActions]:
enriched_requests = []
for request in requests:
allowed_actions = get_allowed_actions(request, user, airlock_request_repo)
enriched_requests.append(AirlockRequestWithAllowedUserActions(airlockRequest=request, allowedUserActions=allowed_actions))
return enriched_requests
async def delete_review_user_resource(
user_resource: UserResource,
user_resource_repo: UserResourceRepository,
workspace_service_repo: WorkspaceServiceRepository,
resource_template_repo: ResourceTemplateRepository,
operations_repo: OperationRepository,
resource_history_repo: ResourceHistoryRepository,
user: User) -> Operation:
workspace_service = await workspace_service_repo.get_workspace_service_by_id(workspace_id=user_resource.workspaceId,
service_id=user_resource.parentWorkspaceServiceId)
# disable might contain logic that we need to execute before the deletion of the resource
_ = await disable_user_resource(user_resource, user, workspace_service, user_resource_repo, resource_template_repo, operations_repo, resource_history_repo)
logger.info(f"Deleting user resource {user_resource.id} in workspace service {workspace_service.id}")
operation = await send_uninstall_message(
resource=user_resource,
resource_repo=user_resource_repo,
operations_repo=operations_repo,
resource_type=ResourceType.UserResource,
resource_template_repo=resource_template_repo,
resource_history_repo=resource_history_repo,
user=user)
logger.info(f"Started operation {operation}")
return operation
async def disable_user_resource(
user_resource: UserResource,
user: User,
workspace_service: WorkspaceService,
user_resource_repo: UserResourceRepository,
resource_template_repo: ResourceTemplateRepository,
operations_repo: OperationRepository,
resource_history_repo: ResourceHistoryRepository) -> Operation:
resource_patch = ResourcePatch(isEnabled=False)
operation = await update_user_resource(user_resource=user_resource, resource_patch=resource_patch, force_version_update=False,
user=user, etag=user_resource.etag, workspace_service=workspace_service, user_resource_repo=user_resource_repo,
resource_template_repo=resource_template_repo, operations_repo=operations_repo, resource_history_repo=resource_history_repo)
return operation
async def delete_all_review_user_resources(
airlock_request: AirlockRequest,
user_resource_repo: UserResourceRepository,
workspace_service_repo: WorkspaceServiceRepository,
resource_template_repo: ResourceTemplateRepository,
operations_repo: OperationRepository,
resource_history_repo: ResourceHistoryRepository,
user: User) -> List[Operation]:
operations: List[Operation] = []
for review_ur in airlock_request.reviewUserResources.values():
user_resource = await user_resource_repo.get_user_resource_by_id(
workspace_id=review_ur.workspaceId,
service_id=review_ur.workspaceServiceId,
resource_id=review_ur.userResourceId
)
operation = await delete_review_user_resource(
user_resource=user_resource,
user_resource_repo=user_resource_repo,
workspace_service_repo=workspace_service_repo,
resource_template_repo=resource_template_repo,
operations_repo=operations_repo,
resource_history_repo=resource_history_repo,
user=user
)
operations.append(operation)
logger.info(f"Started {len(operations)} operations on deleting user resources")
return operations
async def cancel_request(airlock_request: AirlockRequest, user: User, workspace: Workspace,
airlock_request_repo: AirlockRequestRepository, user_resource_repo: UserResourceRepository, workspace_service_repo: WorkspaceServiceRepository,
resource_template_repo: ResourceTemplateRepository, operations_repo: OperationRepository, resource_history_repo: ResourceHistoryRepository) -> AirlockRequest:
updated_request = await update_and_publish_event_airlock_request(airlock_request=airlock_request, airlock_request_repo=airlock_request_repo, updated_by=user, workspace=workspace, new_status=AirlockRequestStatus.Cancelled)
await delete_all_review_user_resources(airlock_request, user_resource_repo, workspace_service_repo, resource_template_repo, operations_repo, resource_history_repo, user)
return updated_request
def _user_has_one_of_roles(user: User, roles) -> bool:
return any(role in roles for role in user.roles)
|
AzureTRE/api_app/services/airlock.py/0
|
{
"file_path": "AzureTRE/api_app/services/airlock.py",
"repo_id": "AzureTRE",
"token_count": 10431
}
| 90 |
import pytest
from httpx import AsyncClient
from starlette.status import HTTP_404_NOT_FOUND
pytestmark = pytest.mark.asyncio
async def test_frw_validation_error_format(app):
async with AsyncClient(base_url="http://testserver", app=app) as client:
response = await client.get("/wrong_path/asd")
assert response.status_code == HTTP_404_NOT_FOUND
assert "Not Found" in response.text
|
AzureTRE/api_app/tests_ma/test_api/test_errors/test_error.py/0
|
{
"file_path": "AzureTRE/api_app/tests_ma/test_api/test_errors/test_error.py",
"repo_id": "AzureTRE",
"token_count": 142
}
| 91 |
### Get all workspaces (Workspace Owner or Researcher -- Get own Workspaces)
GET {{baseUrl}}/workspaces
Accept: {{contentType}}
Authorization: Bearer {{token}}
### Get workspace (Workspace Owner or Researcher -- Get own Workspace)
GET {{baseUrl}}/workspaces/{{workspaceId}}
Accept: {{contentType}}
Authorization: Bearer {{token}}
### Get workspace services (Workspace Owner or Researcher -- Get for own Workspace)
GET {{baseUrl}}/workspaces/{{workspaceId}}/workspace-services
Accept: {{contentType}}
Authorization: Bearer {{token}}
### Get specific workspace services (Workspace Owner or Researcher -- Get for own Workspace)
GET {{baseUrl}}/workspaces/{{workspaceId}}/workspace-services/{{workspaceServiceId}}
Accept: {{contentType}}
Authorization: Bearer {{token}}
### Get user-resources (Workspace Owner or Researcher -- Get for own user resource)
GET {{baseUrl}}/workspaces/{{workspaceId}}/workspace-services/{{workspaceServiceId}}/user-resources
Accept: {{contentType}}
Authorization: Bearer {{token}}
### Get user-resources (Workspace Owner or Researcher -- Get for own user resource)
GET {{baseUrl}}/workspaces/{{workspaceId}}/workspace-services/{{workspaceServiceId}}/user-resources/{{userResourceId}}
Accept: {{contentType}}
Authorization: Bearer {{token}}
|
AzureTRE/api_http_requests/API Resource GET Endpoints.http/0
|
{
"file_path": "AzureTRE/api_http_requests/API Resource GET Endpoints.http",
"repo_id": "AzureTRE",
"token_count": 355
}
| 92 |
import asyncio
from logging import Logger
import msal
from azure.identity.aio import ClientSecretCredential
from azure.cli.core import cloud
from urllib.parse import urlparse
from msal.authority import AuthorityBuilder
def get_auth_token_client_credentials(
log: Logger,
client_id: str,
client_secret: str,
aad_tenant_id: str,
api_scope: str,
verify: bool
):
try:
event_loop = asyncio.new_event_loop()
asyncio.set_event_loop(event_loop)
credential = ClientSecretCredential(aad_tenant_id, client_id, client_secret, connection_verify=verify, authority=get_aad_authority_fqdn())
token = event_loop.run_until_complete(credential.get_token(f'{api_scope}/.default'))
event_loop.run_until_complete(credential.close())
event_loop.close()
return token.token
except Exception as ex:
log.error(f"Failed to authenticate: {ex}")
raise RuntimeError("Failed to get auth token")
def get_public_client_application(
client_id: str,
aad_tenant_id: str,
token_cache
):
return msal.PublicClientApplication(
client_id=client_id,
authority=AuthorityBuilder(instance=get_aad_authority_fqdn(), tenant=aad_tenant_id),
token_cache=token_cache)
def get_cloud() -> cloud.Cloud:
return cloud.get_active_cloud()
def get_aad_authority_fqdn() -> str:
return urlparse(get_cloud().endpoints.active_directory).netloc
|
AzureTRE/cli/tre/authentication.py/0
|
{
"file_path": "AzureTRE/cli/tre/authentication.py",
"repo_id": "AzureTRE",
"token_count": 570
}
| 93 |
import logging
import click
from tre.commands.operation import operations_list
from tre.output import output_option, query_option
from .contexts import SharedServiceContext, pass_shared_service_context
@click.group(name="operations", help="List operations ")
def shared_service_operations():
pass
@click.command(name="list", help="List shared_service operations")
@output_option()
@query_option()
@pass_shared_service_context
def shared_service_operations_list(shared_service_context: SharedServiceContext, output_format, query):
log = logging.getLogger(__name__)
shared_service_id = shared_service_context.shared_service_id
if shared_service_id is None:
raise click.UsageError('Missing shared_service ID')
operations_url = f'/api/shared-services/{shared_service_id}/operations'
operations_list(log, operations_url, output_format, query)
shared_service_operations.add_command(shared_service_operations_list)
|
AzureTRE/cli/tre/commands/shared_services/operations.py/0
|
{
"file_path": "AzureTRE/cli/tre/commands/shared_services/operations.py",
"repo_id": "AzureTRE",
"token_count": 287
}
| 94 |
import json
import logging
import click
from tre.api_client import ApiClient
from tre.commands.operation import default_operation_table_query_single, operation_show
from tre.output import output, output_option, query_option
from .contexts import UserResourceContext, pass_user_resource_context
from .operation import user_resource_operation
from .operations import user_resource_operations
def user_resource_id_completion(ctx: click.Context, param: click.Parameter, incomplete: str):
log = logging.getLogger(__name__)
parent_ctx = ctx.parent
workspace_service_id = parent_ctx.params["workspace_service_id"]
parent2_ctx = parent_ctx.parent
workspace_id = parent2_ctx.params["workspace_id"]
client = ApiClient.get_api_client_from_config()
workspace_scope = client.get_workspace_scope(log, workspace_id)
response = client.call_api(
log,
"GET",
f"/api/workspaces/{workspace_id}/workspace-services/{workspace_service_id}/user-resources",
scope_id=workspace_scope,
)
if response.is_success:
ids = [resource["id"] for resource in response.json()["userResources"]]
return [id for id in ids if id.startswith(incomplete)]
@click.group(
name="user-resource",
invoke_without_command=True,
help="Perform actions on a user resource",
)
@click.argument(
"user_resource_id",
required=True,
type=click.UUID,
shell_complete=user_resource_id_completion,
)
@click.pass_context
def user_resource(ctx: click.Context, user_resource_id) -> None:
ctx.obj = UserResourceContext.add_user_resource_id_to_context_obj(
ctx, user_resource_id
)
@click.command(name="show", help="Show user resource")
@output_option()
@query_option()
@pass_user_resource_context
def user_resource_show(
user_resource_context: UserResourceContext, output_format, query
) -> None:
log = logging.getLogger(__name__)
workspace_id = user_resource_context.workspace_id
if workspace_id is None:
raise click.UsageError("Missing workspace ID")
workspace_service_id = user_resource_context.workspace_service_id
if workspace_service_id is None:
raise click.UsageError("Missing workspace service ID")
user_resource_id = user_resource_context.user_resource_id
if user_resource_id is None:
raise click.UsageError("Missing user resource ID")
client = ApiClient.get_api_client_from_config()
workspace_scope = client.get_workspace_scope(log, workspace_id)
response = client.call_api(
log,
"GET",
f"/api/workspaces/{workspace_id}/workspace-services/{workspace_service_id}/user-resources/{user_resource_id}",
scope_id=workspace_scope,
)
output(
response,
output_format=output_format,
query=query,
default_table_query=r"userResource.{id:id, template_name:templateName, template_version:templateVersion, display_name:properties.display_name, owner:user.name}",
)
@click.command(name="update", help="Update a workspace")
@click.option("--etag", help="The etag of the workspace to update", required=True)
@click.option("--definition", help="JSON definition for the workspace", required=False)
@click.option(
"--definition-file",
help="File containing JSON definition for the workspace",
required=False,
type=click.File("r"),
)
@click.option("--no-wait", flag_value=True, default=False)
@output_option()
@query_option()
@click.pass_context
@pass_user_resource_context
def user_resource_update(
user_resource_context: UserResourceContext,
ctx: click.Context,
etag,
definition,
definition_file,
no_wait,
output_format,
query,
suppress_output: bool = False,
):
log = logging.getLogger(__name__)
workspace_id = user_resource_context.workspace_id
if workspace_id is None:
raise click.UsageError("Missing workspace ID")
workspace_service_id = user_resource_context.workspace_service_id
if workspace_service_id is None:
raise click.UsageError("Missing workspace service ID")
user_resource_id = user_resource_context.user_resource_id
if user_resource_id is None:
raise click.UsageError("Missing user resource ID")
if definition is None:
if definition_file is None:
raise click.UsageError(
"Please specify either a definition or a definition file"
)
definition = definition_file.read()
definition_dict = json.loads(definition)
client = ApiClient.get_api_client_from_config()
workspace_scope = client.get_workspace_scope(log, workspace_id)
response = client.call_api(
log,
"PATCH",
f"/api/workspaces/{workspace_id}/workspace-services/{workspace_service_id}/user-resources/{user_resource_id}",
headers={"etag": etag},
json_data=definition_dict,
scope_id=workspace_scope,
)
if no_wait:
output(
response,
output_format=output_format,
query=query,
default_table_query=default_operation_table_query_single(),
)
else:
operation_url = response.headers["location"]
operation_show(
log,
operation_url,
no_wait=False,
output_format=output_format,
query=query,
suppress_output=suppress_output,
scope_id=workspace_scope,
)
@click.command(name="set-enabled", help="Enable/disable a user resource")
@click.option("--etag", help="The etag of the user resource to update", required=True)
@click.option("--enable/--disable", is_flag=True, required=True)
@click.option("--no-wait", flag_value=True, default=False)
@output_option()
@query_option()
@pass_user_resource_context
def user_resource_set_enabled(
user_resource_context: UserResourceContext,
etag,
enable,
no_wait,
output_format,
query,
suppress_output: bool = False,
):
log = logging.getLogger(__name__)
workspace_id = user_resource_context.workspace_id
if workspace_id is None:
raise click.UsageError("Missing workspace ID")
workspace_service_id = user_resource_context.workspace_service_id
if workspace_service_id is None:
raise click.UsageError("Missing workspace service ID")
user_resource_id = user_resource_context.user_resource_id
if user_resource_id is None:
raise click.UsageError("Missing user resource ID")
client = ApiClient.get_api_client_from_config()
workspace_scope = client.get_workspace_scope(log, workspace_id)
click.echo(f"Setting isEnabled to {enable}...", err=True)
response = client.call_api(
log,
"PATCH",
f"/api/workspaces/{workspace_id}/workspace-services/{workspace_service_id}/user-resources/{user_resource_id}",
headers={"etag": etag},
json_data={"isEnabled": enable},
scope_id=workspace_scope,
)
if no_wait:
if not suppress_output or not response.is_success:
output(
response,
output_format=output_format,
query=query,
default_table_query=default_operation_table_query_single(),
)
else:
operation_url = response.headers["location"]
operation_show(
log,
operation_url,
no_wait=False,
output_format=output_format,
query=query,
suppress_output=suppress_output,
scope_id=workspace_scope,
)
@click.command(name="delete", help="Delete a user resource")
@click.option("--yes", is_flag=True, default=False)
@click.option("--no-wait", flag_value=True, default=False)
@click.option(
"--ensure-disabled",
help="Ensure disabled before deleting (resources are required to be disabled before deleting)",
flag_value=True,
default=False,
)
@output_option()
@query_option()
@click.pass_context
@pass_user_resource_context
def user_resource_delete(
user_resource_context: UserResourceContext,
ctx: click.Context,
yes,
no_wait,
ensure_disabled,
output_format,
query,
):
log = logging.getLogger(__name__)
workspace_id = user_resource_context.workspace_id
if workspace_id is None:
raise click.UsageError("Missing workspace ID")
workspace_service_id = user_resource_context.workspace_service_id
if workspace_service_id is None:
raise click.UsageError("Missing workspace service ID")
user_resource_id = user_resource_context.user_resource_id
if user_resource_id is None:
raise click.UsageError("Missing user resource ID")
if not yes:
click.confirm(
"Are you sure you want to delete this user resource?", err=True, abort=True
)
client = ApiClient.get_api_client_from_config()
workspace_scope = client.get_workspace_scope(log, workspace_id)
if ensure_disabled:
response = client.call_api(
log,
"GET",
f"/api/workspaces/{workspace_id}/workspace-services/{workspace_service_id}/user-resources/{user_resource_id}",
scope_id=workspace_scope,
)
workspace_json = response.json()
if workspace_json["userResource"]["isEnabled"]:
etag = workspace_json["userResource"]["_etag"]
ctx.invoke(
user_resource_set_enabled,
etag=etag,
enable=False,
no_wait=False,
suppress_output=True,
)
click.echo("Deleting user resource...", err=True)
response = client.call_api(
log,
"DELETE",
f"/api/workspaces/{workspace_id}/workspace-services/{workspace_service_id}/user-resources/{user_resource_id}",
scope_id=workspace_scope,
)
if no_wait:
output(
response,
output_format=output_format,
query=query,
default_table_query=default_operation_table_query_single(),
)
else:
operation_url = response.headers["location"]
operation_show(
log,
operation_url,
no_wait,
output_format=output_format,
query=query,
scope_id=workspace_scope,
)
@click.command(name="invoke-action", help="Invoke an action on a user resource")
@click.argument("action-name", required=True)
@click.option("--no-wait", flag_value=True, default=False)
@output_option()
@query_option()
@pass_user_resource_context
def user_resource_invoke_action(
user_resource_context: UserResourceContext,
action_name,
no_wait,
output_format,
query,
):
log = logging.getLogger(__name__)
workspace_id = user_resource_context.workspace_id
if workspace_id is None:
raise click.UsageError("Missing workspace ID")
workspace_service_id = user_resource_context.workspace_service_id
if workspace_service_id is None:
raise click.UsageError("Missing workspace service ID")
user_resource_id = user_resource_context.user_resource_id
if user_resource_id is None:
raise click.UsageError("Missing user resource ID")
client = ApiClient.get_api_client_from_config()
workspace_scope = client.get_workspace_scope(log, workspace_id)
click.echo(f"Invoking action {action_name}...\n", err=True)
response = client.call_api(
log,
"POST",
f"/api/workspaces/{workspace_id}/workspace-services/{workspace_service_id}/user-resources/{user_resource_id}/invoke-action",
scope_id=workspace_scope,
params={"action": action_name},
)
if no_wait:
output(response, output_format=output_format, query=query)
else:
operation_url = response.headers["location"]
operation_show(
log,
operation_url,
no_wait=False,
output_format=output_format,
query=query,
scope_id=workspace_scope,
)
user_resource.add_command(user_resource_show)
user_resource.add_command(user_resource_update)
user_resource.add_command(user_resource_set_enabled)
user_resource.add_command(user_resource_delete)
user_resource.add_command(user_resource_operation)
user_resource.add_command(user_resource_operations)
user_resource.add_command(user_resource_invoke_action)
|
AzureTRE/cli/tre/commands/workspaces/workspace_services/user_resources/user_resource.py/0
|
{
"file_path": "AzureTRE/cli/tre/commands/workspaces/workspace_services/user_resources/user_resource.py",
"repo_id": "AzureTRE",
"token_count": 4962
}
| 95 |
# Utilize the existing service bus - add new queue
resource "azurerm_servicebus_queue" "step_result" {
name = local.step_result_queue_name
namespace_id = var.airlock_servicebus.id
enable_partitioning = false
}
resource "azurerm_servicebus_queue" "status_changed" {
name = local.status_changed_queue_name
namespace_id = var.airlock_servicebus.id
enable_partitioning = false
}
resource "azurerm_servicebus_queue" "scan_result" {
name = local.scan_result_queue_name
namespace_id = var.airlock_servicebus.id
enable_partitioning = false
}
resource "azurerm_servicebus_queue" "data_deletion" {
name = local.data_deletion_queue_name
namespace_id = var.airlock_servicebus.id
enable_partitioning = false
}
resource "azurerm_servicebus_topic" "blob_created" {
name = local.blob_created_topic_name
namespace_id = var.airlock_servicebus.id
enable_partitioning = false
}
resource "azurerm_servicebus_subscription" "airlock_processor" {
name = local.blob_created_al_processor_subscription_name
topic_id = azurerm_servicebus_topic.blob_created.id
max_delivery_count = 1
}
|
AzureTRE/core/terraform/airlock/service_bus.tf/0
|
{
"file_path": "AzureTRE/core/terraform/airlock/service_bus.tf",
"repo_id": "AzureTRE",
"token_count": 447
}
| 96 |
output "app_insights_connection_string" {
value = azurerm_application_insights.core.connection_string
}
output "log_analytics_workspace_id" {
value = azurerm_log_analytics_workspace.core.id
}
output "log_analytics_workspace_name" {
value = azurerm_log_analytics_workspace.core.name
}
|
AzureTRE/core/terraform/azure-monitor/outputs.tf/0
|
{
"file_path": "AzureTRE/core/terraform/azure-monitor/outputs.tf",
"repo_id": "AzureTRE",
"token_count": 105
}
| 97 |
# admin jumpbox
moved {
from = module.jumpbox.azurerm_network_interface.jumpbox_nic
to = azurerm_network_interface.jumpbox_nic
}
moved {
from = module.jumpbox.random_string.username
to = random_string.username
}
moved {
from = module.jumpbox.random_password.password
to = random_password.password
}
moved {
from = module.jumpbox.azurerm_virtual_machine.jumpbox
to = azurerm_virtual_machine.jumpbox
}
moved {
from = module.jumpbox.azurerm_key_vault_secret.jumpbox_credentials
to = azurerm_key_vault_secret.jumpbox_credentials
}
## Storage
moved {
from = module.storage.azurerm_storage_account.stg
to = azurerm_storage_account.stg
}
moved {
from = module.storage.azurerm_storage_share.storage_state_path
to = azurerm_storage_share.storage_state_path
}
moved {
from = module.storage.azurerm_private_dns_zone.blobcore
to = azurerm_private_dns_zone.blobcore
}
moved {
from = module.storage.azurerm_private_endpoint.blobpe
to = azurerm_private_endpoint.blobpe
}
moved {
from = module.storage.azurerm_private_dns_zone.filecore
to = azurerm_private_dns_zone.filecore
}
moved {
from = module.storage.azurerm_private_endpoint.filepe
to = azurerm_private_endpoint.filepe
}
## Identity
moved {
from = module.identity.azurerm_user_assigned_identity.id
to = azurerm_user_assigned_identity.id
}
moved {
from = module.identity.azurerm_role_assignment.vm_contributor
to = azurerm_role_assignment.vm_contributor
}
moved {
from = module.identity.azurerm_role_assignment.acrpull_role
to = azurerm_role_assignment.acrpull_role
}
moved {
from = module.identity.azurerm_role_assignment.servicebus_sender
to = azurerm_role_assignment.servicebus_sender
}
moved {
from = module.identity.azurerm_role_assignment.servicebus_receiver
to = azurerm_role_assignment.servicebus_receiver
}
moved {
from = module.identity.azurerm_role_assignment.cosmos_contributor
to = azurerm_role_assignment.cosmos_contributor
}
# Api-webapp
moved {
from = module.api-webapp.azurerm_app_service_plan.core
to = azurerm_app_service_plan.core
}
moved {
from = module.api-webapp.azurerm_app_service.api
to = azurerm_app_service.api
}
moved {
from = module.api-webapp.azurerm_private_endpoint.api_private_endpoint
to = azurerm_private_endpoint.api_private_endpoint
}
moved {
from = module.api-webapp.azurerm_app_service_virtual_network_swift_connection.api-integrated-vnet
to = azurerm_app_service_virtual_network_swift_connection.api-integrated-vnet
}
moved {
from = module.api-webapp.azurerm_monitor_diagnostic_setting.webapp_api
to = azurerm_monitor_diagnostic_setting.webapp_api
}
# Service bus
moved {
from = module.servicebus.azurerm_servicebus_namespace.sb
to = azurerm_servicebus_namespace.sb
}
moved {
from = module.servicebus.azurerm_servicebus_queue.workspacequeue
to = azurerm_servicebus_queue.workspacequeue
}
moved {
from = module.servicebus.azurerm_servicebus_queue.service_bus_deployment_status_update_queue
to = azurerm_servicebus_queue.service_bus_deployment_status_update_queue
}
moved {
from = module.servicebus.azurerm_private_dns_zone.servicebus
to = azurerm_private_dns_zone.servicebus
}
moved {
from = module.servicebus.azurerm_private_dns_zone_virtual_network_link.servicebuslink
to = azurerm_private_dns_zone_virtual_network_link.servicebuslink
}
moved {
from = module.servicebus.azurerm_private_endpoint.sbpe
to = azurerm_private_endpoint.sbpe
}
moved {
from = module.servicebus.azurerm_servicebus_namespace_network_rule_set.servicebus_network_rule_set
to = azurerm_servicebus_namespace_network_rule_set.servicebus_network_rule_set
}
# Keyvault
moved {
from = module.keyvault.azurerm_key_vault.kv
to = azurerm_key_vault.kv
}
moved {
from = module.keyvault.azurerm_key_vault_access_policy.deployer
to = azurerm_key_vault_access_policy.deployer
}
moved {
from = module.keyvault.azurerm_key_vault_access_policy.managed_identity
to = azurerm_key_vault_access_policy.managed_identity
}
moved {
from = module.keyvault.azurerm_private_endpoint.kvpe
to = azurerm_private_endpoint.kvpe
}
# Routetable
moved {
from = module.routetable.azurerm_route_table.rt
to = azurerm_route_table.rt
}
moved {
from = module.routetable.azurerm_subnet_route_table_association.rt_shared_subnet_association
to = azurerm_subnet_route_table_association.rt_shared_subnet_association
}
moved {
from = module.routetable.azurerm_subnet_route_table_association.rt_resource_processor_subnet_association
to = azurerm_subnet_route_table_association.rt_resource_processor_subnet_association
}
moved {
from = module.routetable.azurerm_subnet_route_table_association.rt_web_app_subnet_association
to = azurerm_subnet_route_table_association.rt_web_app_subnet_association
}
# State store
moved {
from = module.state-store.azurerm_cosmosdb_account.tre-db-account
to = azurerm_cosmosdb_account.tre-db-account
}
moved {
from = module.state-store.azurerm_cosmosdb_sql_database.tre-db
to = azurerm_cosmosdb_sql_database.tre-db
}
moved {
from = module.state-store.azurerm_management_lock.tre-db
to = azurerm_management_lock.tre-db
}
moved {
from = module.state-store.azurerm_private_dns_zone.cosmos
to = azurerm_private_dns_zone.cosmos
}
moved {
from = module.state-store.azurerm_private_dns_zone_virtual_network_link.cosmos_documents_dns_link
to = azurerm_private_dns_zone_virtual_network_link.cosmos_documents_dns_link
}
moved {
from = module.state-store.azurerm_private_endpoint.sspe
to = azurerm_private_endpoint.sspe
}
# Bastion
moved {
from = module.bastion.azurerm_public_ip.bastion
to = azurerm_public_ip.bastion
}
moved {
from = module.bastion.azurerm_bastion_host.bastion
to = azurerm_bastion_host.bastion
}
moved {
from = module.airlock.azurerm_private_dns_zone.eventgrid
to = module.network.azurerm_private_dns_zone.eventgrid
}
# DNS Zones
moved {
from = module.network.azurerm_private_dns_zone.mysql
to = azurerm_private_dns_zone.non_core["privatelink.mysql.database.azure.com"]
}
moved {
from = module.network.azurerm_private_dns_zone.azureml
to = azurerm_private_dns_zone.non_core["privatelink.api.azureml.ms"]
}
moved {
from = module.network.azurerm_private_dns_zone.azuremlcert
to = azurerm_private_dns_zone.non_core["privatelink.cert.api.azureml.ms"]
}
moved {
from = module.network.azurerm_private_dns_zone.notebooks
to = azurerm_private_dns_zone.non_core["privatelink.notebooks.azure.net"]
}
moved {
from = module.network.azurerm_private_dns_zone.postgres
to = azurerm_private_dns_zone.non_core["privatelink.postgres.database.azure.com"]
}
moved {
from = module.network.azurerm_private_dns_zone_virtual_network_link.mysql
to = azurerm_private_dns_zone_virtual_network_link.mysql
}
moved {
from = module.network.azurerm_private_dns_zone.private_dns_zones["privatelink.purview.azure.com"]
to = azurerm_private_dns_zone.non_core["privatelink.purview.azure.com"]
}
moved {
from = module.network.azurerm_private_dns_zone.private_dns_zones["privatelink.purviewstudio.azure.com"]
to = azurerm_private_dns_zone.non_core["privatelink.purviewstudio.azure.com"]
}
moved {
from = module.network.azurerm_private_dns_zone.private_dns_zones["privatelink.sql.azuresynapse.net"]
to = azurerm_private_dns_zone.non_core["privatelink.sql.azuresynapse.net"]
}
moved {
from = module.network.azurerm_private_dns_zone.private_dns_zones["privatelink.dev.azuresynapse.net"]
to = azurerm_private_dns_zone.non_core["privatelink.dev.azuresynapse.net"]
}
moved {
from = module.network.azurerm_private_dns_zone.private_dns_zones["privatelink.azuresynapse.net"]
to = azurerm_private_dns_zone.non_core["privatelink.azuresynapse.net"]
}
moved {
from = module.network.azurerm_private_dns_zone.private_dns_zones["privatelink.azuresynapse.net"]
to = azurerm_private_dns_zone.non_core["privatelink.azuresynapse.net"]
}
moved {
from = module.network.azurerm_private_dns_zone.private_dns_zones["privatelink.dfs.core.windows.net"]
to = azurerm_private_dns_zone.non_core["privatelink.dfs.core.windows.net"]
}
moved {
from = module.network.azurerm_private_dns_zone.private_dns_zones["privatelink.azurehealthcareapis.com"]
to = azurerm_private_dns_zone.non_core["privatelink.azurehealthcareapis.com"]
}
moved {
from = module.network.azurerm_private_dns_zone.private_dns_zones["privatelink.dicom.azurehealthcareapis.com"]
to = azurerm_private_dns_zone.non_core["privatelink.dicom.azurehealthcareapis.com"]
}
|
AzureTRE/core/terraform/modules_move_definitions.tf/0
|
{
"file_path": "AzureTRE/core/terraform/modules_move_definitions.tf",
"repo_id": "AzureTRE",
"token_count": 3477
}
| 98 |
#!/bin/bash
|
AzureTRE/core/terraform/scripts/cleanup-hook.sh/0
|
{
"file_path": "AzureTRE/core/terraform/scripts/cleanup-hook.sh",
"repo_id": "AzureTRE",
"token_count": 6
}
| 99 |
#!/bin/bash
# This script is designed to be `source`d to create reusable helper functions
# Utility function that retrieves all of the 'requiredResourceAccess' from an application,
# it then removes any access for a given `resourceAppId`, merges in a new element into the
# array and then posts it back to AAD.
function update_resource_access()
{
local msGraphUri=$1
local existingObjectId=$2
local resourceAppId=$3
local requiredResourceAccessArray=$4
# Get the existing required resource access from the automation app,
# but remove the access that we are about to add for idempotency. We cant use
# the response from az cli as it returns an 'AdditionalProperties' element in
# the json
existingResourceAccess=$(az rest \
--method GET \
--uri "${msGraphUri}/applications/${existingObjectId}" \
--headers Content-Type=application/json -o json \
| jq -r --arg resourceAppId "${resourceAppId}" \
'del(.requiredResourceAccess[] | select(.resourceAppId==$resourceAppId)) | .requiredResourceAccess' \
)
# Add the existing resource access so we don't remove any existing permissions.
combinedResourceAccess=$(jq -c . << JSON
{
"requiredResourceAccess": ${requiredResourceAccessArray},
"existingAccess": ${existingResourceAccess}
}
JSON
)
# Manipulate the json (add existingAccess into requiredResourceAccess and then remove it)
requiredResourceAccess=$(echo "${combinedResourceAccess}" | \
jq '.requiredResourceAccess += .existingAccess | {requiredResourceAccess}')
az rest --method PATCH \
--uri "${msGraphUri}/applications/${existingObjectId}" \
--headers Content-Type=application/json \
--body "${requiredResourceAccess}"
}
|
AzureTRE/devops/scripts/aad/update_resource_access.sh/0
|
{
"file_path": "AzureTRE/devops/scripts/aad/update_resource_access.sh",
"repo_id": "AzureTRE",
"token_count": 483
}
| 100 |
#!/bin/bash
set -o errexit
set -o pipefail
set -o nounset
# set -o xtrace
#
# Usage:
# env_to_yaml_config.sh <.env file>
#
cp config.sample.yaml config.yaml
# Loop over the relevant lines in the file specified in $1 (passed in after the loop)
# The loop source filters the lines in the source file to those that should be treated
# as variable definitions
env_files=()
for p in "devops/auth.env" "devops/.env" "templates/core/.env"
do
if [ -r "$p" ]
then
env_files+=("$p")
else
echo -e "\e[31m»»» ⚠️ Your $p file has not been setup! 😥 Make sure to fill in the missing configration in config.yaml."
fi
done
for f in "${env_files[@]}"
do
while read -r line
do
# split the line into name/value
name=$(echo "$line" | cut -d= -f1| tr '[:upper:]' '[:lower:]')
value=$(echo "$line" | cut -d= -f2)
if [ "$f" == "devops/auth.env" ]; then
yq e -i "(.authentication | .\"$name\") = $value" config.yaml
else
# if the value is quote-delimited then strip that as we quote in the declare statement
if [[ ("${value:0:1}" == "'" && "${value: -1:1}" == "'") || (("${value:0:1}" == "\"" && "${value: -1:1}" == "\"")) ]]; then
value=${value:1:-1}
fi
if [[ ($value == ?(-)+([0-9]) || $value == "true" || $value == "false")]]; then
yq e -i "(.. | select(has(\"$name\")).\"$name\") = $value" config.yaml
else
# Set value in config.yaml file
yq e -i "(.. | select(has(\"$name\")).\"$name\") = \"$value\"" config.yaml
fi
fi
done < <(grep -v -e '^[[:space:]]*$' -e '^#' "$f" )
done
set +o nounset
|
AzureTRE/devops/scripts/env_to_yaml_config.sh/0
|
{
"file_path": "AzureTRE/devops/scripts/env_to_yaml_config.sh",
"repo_id": "AzureTRE",
"token_count": 687
}
| 101 |
#!/bin/bash
set -o errexit
set -o pipefail
set -o nounset
# Uncomment this line to see each command for debugging (careful: this will show secrets!)
# set -o xtrace
if [[ -z ${STORAGE_ACCOUNT:-} ]]; then
echo "STORAGE_ACCOUNT not set"
exit 1
fi
# The storage account is protected by network rules
echo "Enabling public access to storage account..."
az storage account update --default-action Allow --name "${STORAGE_ACCOUNT}"
sleep 30
echo "Uploading ${CONTENT_DIR} to static web storage"
# shellcheck disable=SC2016
az storage blob upload-batch \
--account-name "${STORAGE_ACCOUNT}" \
--auth-mode login \
--destination '$web' \
--source "${CONTENT_DIR}" \
--no-progress \
--only-show-errors \
--overwrite
echo "Disabling public access to storage account..."
az storage account update --default-action Deny --name "${STORAGE_ACCOUNT}"
|
AzureTRE/devops/scripts/upload_static_web.sh/0
|
{
"file_path": "AzureTRE/devops/scripts/upload_static_web.sh",
"repo_id": "AzureTRE",
"token_count": 286
}
| 102 |
# TRE Automation Admin Application
## Name
The Automation Application is typically called `<TRE_ID> Automation Admin` within the Microsoft Entra ID Portal.
## Purpose
This application is used to authorize end-to-end test scenarios.
!!! note
- This app registration is only needed and used for **testing**
## Application Roles
This application does not have any roles defined.
## Permissions
| Name | Type* | Admin consent required | TRE usage |
| --- | -- | -----| --------- |
|TRE API / TREAdmin|Application|Yes|This allows this application to authenticate as a TRE Admin for running the tests locally and the E2E in the build.|
|TRE API / user_impersonation|Delegated|No|This allows the application to impersonate the logged in user.|
|TRE - workspace x API / WorkspaceOwner|Application|Yes|This allows this application to authenticate as a Workspace Owner for running the tests locally and the E2E in the build.|
|TRE - workspace x API / user_impersonation|Delegated|No|This allows the application to impersonate the logged in user.|
'*' See the difference between [delegated and application permission](https://docs.microsoft.com/graph/auth/auth-concepts#delegated-and-application-permissions) types. See [Microsoft Graph permissions reference](https://docs.microsoft.com/graph/permissions-reference) for more details.
## Clients
This application is used locally to automatically register bundles against the API and is the user that runs the E2E locally and in the Build.
## Environment Variables
| Variable | Description | Location |
| -------- | ----------- | -------- |
|TEST_ACCOUNT_CLIENT_ID|The Client Id|`./config.yaml`|
|TEST_ACCOUNT_CLIENT_SECRET|The client secret|`./config.yaml`|
## How to create
Example on how to run the script:
```bash
./devops/scripts/aad/create_automation_administrator.sh \
--name "${TRE_ID}"
```
| Argument | Description |
| -------- | ----------- |
| `--name` | The prefix of the name of the app registrations. `TRE123` will give you `TRE123 Automation Admin`. |
| `--reset-password` | Optional, default is 0. When run in a headless fashion, 1 is passed in to always reset the password. |
### Create this application from the portal (optional)
To create an application registration for automation, open the Microsoft Entra ID tenant for your TRE in the portal and navigate to "App Registrations".
Click "New registration" as shown in the image below.
Enter a name for the application registration and click "Register".
On the app registration "Overview" page, copy the "Application (client) ID" value and save it for later.
Under "Manage", click on "Certificates & secrets" and then "New client secret"
Add a description and create the client secret. Once done, the secret value will be displayed (as shown below). Copy this value and save it for later as you cannot retrieve it again after closing this page.
#### Add API Permissions
After creating the automation application registration, it needs to be granted permissions to access the TRE API.
Navigate to the API permissions page for the application registration and click "Add a permission"
Next, click on the "My APIs" tab, and then on "TRE API"
On the "Delegated permissions" section, select "user_impersonation".
On the "Application permissions" section, select "TRE Administrators".
Back on the main permissions page, click on "Grant admin consent". Once done, you should see "Granted" in the "Status" column, as shown below.
|
AzureTRE/docs/tre-admins/identities/test-account.md/0
|
{
"file_path": "AzureTRE/docs/tre-admins/identities/test-account.md",
"repo_id": "AzureTRE",
"token_count": 1193
}
| 103 |
# Installing workspace service and user resource
## Publish and register a workspace service template
We will use the [Guacamole workspace service bundle](../../tre-templates/workspace-services/guacamole.md) for the purposes of this tutorial; a template that provides Virtual Desktop functionality allowing the deployment of VMs for users. These steps can be repeated for any workspace service template depending on the functionalities required.
1. Run:
```cmd
make workspace_service_bundle BUNDLE=guacamole
```
## Publish and register a user resource template
The Guacamole workspace service also has user resources: the VMs that researchers will deploy. These steps can be repeated for any user resource template.
1. Run:
```cmd
make user_resource_bundle BUNDLE=guacamole-azure-windowsvm WORKSPACE_SERVICE=guacamole
```
## Creating a workspace service
Now that we have published and registered both workspace service and user resource bundles we can use the UI to create a workspace service in our workspace.
1. In the UI go to the workspace you have created in the previous step and click on `Create New` under Workspace Services:
2. Choose the Guacamole (Vurtual Desktop) template:
3. Fill in the details:
4. Go to operations tab and wait till the status is deployed:
## Creating a user resource
Having published and registered the user resource bundles and a Guacamole workspace service is deployed we can now create the VM user resource the researcher can connect and work on.
To create a VM user resource follow the next steps:
1. Inside the Guacamole workspace service created in a previous step, go to Resources and click on `Create New`:
1. Select the VM template and click on `Create`:
1. Fill in the details and click on `Submit`:
1. Go to the reource:
1. Wait until the status is deployed. Once deployed you can connect to the VM:
|
AzureTRE/docs/tre-admins/setup-instructions/ui-install-ws-and-ur.md/0
|
{
"file_path": "AzureTRE/docs/tre-admins/setup-instructions/ui-install-ws-and-ur.md",
"repo_id": "AzureTRE",
"token_count": 710
}
| 104 |
# Troubleshooting cloud-init
Cloud-init is used to configure a number of virtual machines within the Azure TRE project at first boot. This methood is used as we are unable to distribute pre built images with third part dependancies. In a production environment you may choose to create your own VM images to avoid the need for cloud-init scripts to run.
Examples of virtual machines using cloud-init are:
- Resource Processor
- Sonatype Nexus VM
- Apache Guacamole Linux VM
## Retrieving the cloud-inmit logs
Log onto the virtual machine using Bastion or serial console and run the following command to view the cloud-init logs:
```bash
sudo cat /var/log/cloud-init-output.log
```
## Re-running cloud-init scripts
If you wish to re-run the cloud-init scripts you can run the following commands from the virtual machine terminal session:
```bash
sudo cloud-init clean --logs
sudo cloud-init init --local
sudo cloud-init init
sudo cloud-init modules --mode=config
sudo cloud-init modules --mode=final
```
|
AzureTRE/docs/troubleshooting-faq/cloud-init.md/0
|
{
"file_path": "AzureTRE/docs/troubleshooting-faq/cloud-init.md",
"repo_id": "AzureTRE",
"token_count": 254
}
| 105 |
import asyncio
import json
import base64
import logging
from urllib.parse import urlparse
from resources.helpers import get_installation_id
from shared.logging import logger, shell_output_logger
def azure_login_command(config):
set_cloud_command = f"az cloud set --name {config['azure_environment']} >/dev/null "
if config["vmss_msi_id"]:
# Use the Managed Identity when in VMSS context
login_command = f"az login --identity -u {config['vmss_msi_id']} >/dev/null "
else:
# Use a Service Principal when running locally
login_command = f"az login --service-principal --username {config['arm_client_id']} --password {config['arm_client_secret']} --tenant {config['arm_tenant_id']} >/dev/null"
return f"{set_cloud_command} && {login_command}"
def apply_porter_credentials_sets_command(config):
if config["vmss_msi_id"]:
# Use the Managed Identity when in VMSS context
porter_credential_sets = "porter credentials apply vmss_porter/arm_auth_local_debugging.json >/dev/null 2>&1 && porter credentials apply vmss_porter/aad_auth.json >/dev/null 2>&1"
else:
# Use a Service Principal when running locally
porter_credential_sets = "porter credentials apply vmss_porter/arm_auth_local_debugging.json >/dev/null 2>&1 && porter credentials apply vmss_porter/aad_auth_local_debugging.json >/dev/null 2>&1"
return f"{porter_credential_sets}"
def azure_acr_login_command(config):
acr_name = _get_acr_name(acr_fqdn=config['registry_server'])
return f"az acr login --name {acr_name} >/dev/null "
async def build_porter_command(config, msg_body, custom_action=False):
porter_parameter_keys = await get_porter_parameter_keys(config, msg_body)
porter_parameters = ""
if porter_parameter_keys is None:
logger.warning("Unknown porter parameters - explain probably failed.")
else:
for parameter_name in porter_parameter_keys:
# try to find the param in order of priorities:
parameter_value = None
# 1. msg parameters collection
if parameter_name in msg_body["parameters"]:
parameter_value = msg_body["parameters"][parameter_name]
# 2. config (e.g. terraform state env vars)
elif parameter_name in config:
parameter_value = config[parameter_name]
# 3. msg body root (e.g. id of the resource)
elif parameter_name in msg_body:
parameter_value = msg_body[parameter_name]
# 4. if starts user_ then look in user object
elif parameter_name.startswith("user_") and "user" in msg_body and parameter_name[5:] in msg_body["user"]:
parameter_value = msg_body["user"][parameter_name[5:]]
# if still not found, might be a special case
# (we give a chance to the method above to allow override of the special handeling done below)
else:
parameter_value = get_special_porter_param_value(config, parameter_name, msg_body)
# only append if we have a value, porter will complain anyway about missing parameters
if parameter_value is not None:
if isinstance(parameter_value, dict) or isinstance(parameter_value, list):
# base64 encode complex types to pass in safely
val = json.dumps(parameter_value)
val_bytes = val.encode("ascii")
val_base64_bytes = base64.b64encode(val_bytes)
parameter_value = val_base64_bytes.decode("ascii")
porter_parameters = porter_parameters + f" --param {parameter_name}=\"{parameter_value}\""
installation_id = get_installation_id(msg_body)
command_line = [f"porter"
# If a custom action (i.e. not install, uninstall, upgrade) we need to use 'invoke'
f"{' invoke --action' if custom_action else ''}"
f" {msg_body['action']} \"{installation_id}\""
f" --reference {config['registry_server']}/{msg_body['name']}:v{msg_body['version']}"
f" {porter_parameters} --force"
f" --credential-set arm_auth"
f" --credential-set aad_auth"
]
return command_line
async def build_porter_command_for_outputs(msg_body):
installation_id = get_installation_id(msg_body)
command_line = [f"porter installations output list --installation {installation_id} --output json"]
return command_line
async def get_porter_parameter_keys(config, msg_body):
command = [f"porter explain --reference {config['registry_server']}/{msg_body['name']}:v{msg_body['version']} --output json"]
proc = await asyncio.create_subprocess_shell(
''.join(command),
stdout=asyncio.subprocess.PIPE,
stderr=asyncio.subprocess.PIPE,
env=config["porter_env"])
stdout, stderr = await proc.communicate()
logger.debug(f'get_porter_parameter_keys exited with {proc.returncode}')
result_stdout = None
result_stderr = None
if stdout:
result_stdout = stdout.decode()
porter_explain_parameters = json.loads(result_stdout)["parameters"]
porter_parameter_keys = [item["name"] for item in porter_explain_parameters]
return porter_parameter_keys
if stderr:
result_stderr = stderr.decode()
shell_output_logger(result_stderr, '[stderr]', logging.WARN)
def get_special_porter_param_value(config, parameter_name: str, msg_body):
# some parameters might not have identical names and this comes to handle that
if parameter_name == "mgmt_acr_name":
return _get_acr_name(acr_fqdn=config['registry_server'])
if parameter_name == "mgmt_resource_group_name":
return config["tfstate_resource_group_name"]
if parameter_name == "azure_environment":
return config['azure_environment']
if parameter_name == "workspace_id":
return msg_body.get("workspaceId") # not included in all messages
if parameter_name == "parent_service_id":
return msg_body.get("parentWorkspaceServiceId") # not included in all messages
if (value := config["bundle_params"].get(parameter_name.lower())) is not None:
return value
# Parameters that relate to the cloud type
if parameter_name == "aad_authority_url":
return config['aad_authority_url']
if parameter_name == "microsoft_graph_fqdn":
return urlparse(config['microsoft_graph_fqdn']).netloc
if parameter_name == "arm_environment":
return config["arm_environment"]
def _get_acr_name(acr_fqdn: str):
return acr_fqdn.split('.', 1)[0]
|
AzureTRE/resource_processor/resources/commands.py/0
|
{
"file_path": "AzureTRE/resource_processor/resources/commands.py",
"repo_id": "AzureTRE",
"token_count": 2746
}
| 106 |
data "azurerm_subnet" "shared" {
resource_group_name = local.core_resource_group_name
virtual_network_name = local.core_vnet
name = "SharedSubnet"
}
data "azurerm_key_vault" "keyvault" {
name = local.keyvault_name
resource_group_name = local.core_resource_group_name
}
data "azurerm_resource_group" "rg" {
name = local.core_resource_group_name
}
|
AzureTRE/templates/shared_services/admin-vm/terraform/data.tf/0
|
{
"file_path": "AzureTRE/templates/shared_services/admin-vm/terraform/data.tf",
"repo_id": "AzureTRE",
"token_count": 168
}
| 107 |
# This file is maintained automatically by "terraform init".
# Manual edits may be lost in future updates.
provider "registry.terraform.io/hashicorp/azurerm" {
version = "3.57.0"
constraints = "3.57.0"
hashes = [
"h1:SOBKU/ioGnpuQpAx6dgaD0EzfAM2W+uS9e6p59viSxs=",
"zh:028202b0ae01f1262dac076b383cb68b5dd624977669b6db833418c215eb8401",
"zh:26fcf9e9b73cb3bbf87a048361a89050d2e52bdc91190a305e624a62be26a3f4",
"zh:2f381103953e4513068eee62089a0ec8c60a18ecef2235138b6c29a45920d6a2",
"zh:376f016f4b449b2cf38f75e27e7a9157fdcfc925f28198124a30e316abb54f3d",
"zh:7d491bab94d5aba91cd9c307dbd4b655dcdc0a6212541e7800b9a902be98befe",
"zh:85fa7d8339efd15494f947cda02e9ed127eafa32652e568f54261b2e97d2b3ee",
"zh:950e079e55a7e321adbd2f6a0639a4b3b0fac47d2e4bb3a12791e0817b694238",
"zh:975260e09379c5c97cad3171327db2f0b4914909861d4c24ab784b0ecd79c54a",
"zh:a26bb67ab2d2f20e5fee4d41110584af17357f4b4266d80f9debfad61fa0a4fd",
"zh:da0e5d1ec301c69b6fae684e55059fc5e1b91699ed3696229f599d558401556b",
"zh:ea11e62ce53caec240cb3a1da25d248805387fa246314001ed3e07e9105f6e12",
"zh:f569b65999264a9416862bca5cd2a6177d94ccb0424f3a4ef424428912b9cb3c",
]
}
provider "registry.terraform.io/hashicorp/local" {
version = "2.4.0"
constraints = "2.4.0"
hashes = [
"h1:R97FTYETo88sT2VHfMgkPU3lzCsZLunPftjSI5vfKe8=",
"zh:53604cd29cb92538668fe09565c739358dc53ca56f9f11312b9d7de81e48fab9",
"zh:66a46e9c508716a1c98efbf793092f03d50049fa4a83cd6b2251e9a06aca2acf",
"zh:70a6f6a852dd83768d0778ce9817d81d4b3f073fab8fa570bff92dcb0824f732",
"zh:78d5eefdd9e494defcb3c68d282b8f96630502cac21d1ea161f53cfe9bb483b3",
"zh:82a803f2f484c8b766e2e9c32343e9c89b91997b9f8d2697f9f3837f62926b35",
"zh:9708a4e40d6cc4b8afd1352e5186e6e1502f6ae599867c120967aebe9d90ed04",
"zh:973f65ce0d67c585f4ec250c1e634c9b22d9c4288b484ee2a871d7fa1e317406",
"zh:c8fa0f98f9316e4cfef082aa9b785ba16e36ff754d6aba8b456dab9500e671c6",
"zh:cfa5342a5f5188b20db246c73ac823918c189468e1382cb3c48a9c0c08fc5bf7",
"zh:e0e2b477c7e899c63b06b38cd8684a893d834d6d0b5e9b033cedc06dd7ffe9e2",
"zh:f62d7d05ea1ee566f732505200ab38d94315a4add27947a60afa29860822d3fc",
"zh:fa7ce69dde358e172bd719014ad637634bbdabc49363104f4fca759b4b73f2ce",
]
}
|
AzureTRE/templates/shared_services/airlock_notifier/terraform/.terraform.lock.hcl/0
|
{
"file_path": "AzureTRE/templates/shared_services/airlock_notifier/terraform/.terraform.lock.hcl",
"repo_id": "AzureTRE",
"token_count": 1351
}
| 108 |
#!/bin/bash
|
AzureTRE/templates/shared_services/certs/scripts/cleanup-hook.sh/0
|
{
"file_path": "AzureTRE/templates/shared_services/certs/scripts/cleanup-hook.sh",
"repo_id": "AzureTRE",
"token_count": 6
}
| 109 |
{
"$schema": "http://json-schema.org/draft-07/schema",
"$id": "https://github.com/microsoft/AzureTRE/templates/workspace_services/guacamole/user_resources/guacamole-azure-linuxvm/template_schema.json",
"type": "object",
"title": "Azure CycleCloud",
"description": "Azure CycleCloud is an enterprise-friendly tool for orchestrating and managing High Performance Computing (HPC) environments on Azure.",
"required": [
],
"properties": {
}
}
|
AzureTRE/templates/shared_services/cyclecloud/template_schema.json/0
|
{
"file_path": "AzureTRE/templates/shared_services/cyclecloud/template_schema.json",
"repo_id": "AzureTRE",
"token_count": 150
}
| 110 |
data "azurerm_resource_group" "rg" {
name = local.core_resource_group_name
}
data "azurerm_virtual_network" "core" {
name = local.core_virtual_network_name
resource_group_name = data.azurerm_resource_group.rg.name
}
data "azurerm_subnet" "services" {
name = "SharedSubnet"
virtual_network_name = data.azurerm_virtual_network.core.name
resource_group_name = data.azurerm_virtual_network.core.resource_group_name
}
data "azurerm_private_dns_zone" "databricks" {
name = module.terraform_azurerm_environment_configuration.private_links["privatelink.azuredatabricks.net"]
resource_group_name = local.core_resource_group_name
}
|
AzureTRE/templates/shared_services/databricks-auth/terraform/data.tf/0
|
{
"file_path": "AzureTRE/templates/shared_services/databricks-auth/terraform/data.tf",
"repo_id": "AzureTRE",
"token_count": 276
}
| 111 |
resource "azurerm_public_ip" "fwtransit" {
name = "pip-fw-${var.tre_id}"
resource_group_name = local.core_resource_group_name
location = data.azurerm_resource_group.rg.location
allocation_method = "Static"
sku = "Standard"
tags = local.tre_shared_service_tags
lifecycle { ignore_changes = [tags, zones] }
}
moved {
from = azurerm_public_ip.fwpip
to = azurerm_public_ip.fwtransit
}
resource "azurerm_public_ip" "fwmanagement" {
count = var.sku_tier == "Basic" ? 1 : 0
name = "pip-fw-management-${var.tre_id}"
resource_group_name = local.core_resource_group_name
location = data.azurerm_resource_group.rg.location
allocation_method = "Static"
sku = "Standard"
tags = local.tre_shared_service_tags
lifecycle { ignore_changes = [tags, zones] }
}
resource "azurerm_firewall" "fw" {
name = local.firewall_name
resource_group_name = local.core_resource_group_name
location = data.azurerm_resource_group.rg.location
sku_tier = var.sku_tier
sku_name = "AZFW_VNet"
firewall_policy_id = azurerm_firewall_policy.root.id
tags = local.tre_shared_service_tags
ip_configuration {
name = "fw-ip-configuration"
subnet_id = data.azurerm_subnet.firewall.id
public_ip_address_id = azurerm_public_ip.fwtransit.id
}
dynamic "management_ip_configuration" {
for_each = var.sku_tier == "Basic" ? [1] : []
content {
name = "mgmtconfig"
subnet_id = data.azurerm_subnet.firewall_management.id
public_ip_address_id = azurerm_public_ip.fwmanagement[0].id
}
}
lifecycle { ignore_changes = [tags] }
}
data "azurerm_monitor_diagnostic_categories" "firewall" {
resource_id = azurerm_firewall.fw.id
}
resource "azurerm_monitor_diagnostic_setting" "firewall" {
name = "diagnostics-fw-${var.tre_id}"
target_resource_id = azurerm_firewall.fw.id
log_analytics_workspace_id = data.azurerm_log_analytics_workspace.tre.id
log_analytics_destination_type = "Dedicated"
dynamic "enabled_log" {
for_each = setintersection(data.azurerm_monitor_diagnostic_categories.firewall.log_category_types, local.firewall_diagnostic_categories_enabled)
content {
category = enabled_log.value
}
}
metric {
category = "AllMetrics"
enabled = true
}
}
resource "azurerm_firewall_policy" "root" {
name = local.firewall_policy_name
resource_group_name = local.core_resource_group_name
location = data.azurerm_resource_group.rg.location
sku = var.sku_tier
tags = local.tre_shared_service_tags
lifecycle { ignore_changes = [tags] }
}
|
AzureTRE/templates/shared_services/firewall/terraform/firewall.tf/0
|
{
"file_path": "AzureTRE/templates/shared_services/firewall/terraform/firewall.tf",
"repo_id": "AzureTRE",
"token_count": 1314
}
| 112 |
# This file is maintained automatically by "terraform init".
# Manual edits may be lost in future updates.
provider "registry.terraform.io/hashicorp/azurerm" {
version = "3.33.0"
constraints = "3.33.0"
hashes = [
"h1:pXB6SKE4NKdf+LepsQjrLcBnVTL5ejeKvx/kyojai6c=",
"zh:136d9c642746d8d84e62ecd8ab0c7dc015eac504c1f068e06fad438ae222d934",
"zh:266e64b8e32a94ddcc20954ebad1d8ff3921d318addf576e981b1390e5d5ba79",
"zh:3bd84a1e5b3bbe34a5870f271d6a5bf9b35a4c924db32b450a1fb53bc910c37a",
"zh:3c6604041472bb4691b502877cf9d886ed9f973fbadf11389ec9499fdc66045e",
"zh:680c00a73c8054c36a58115a44d02d1ebb675c2ad3afaaab2d74a01f978f16ce",
"zh:6dab47ef64f90e43b75ed240a974c4119f5268be4433f3c1c3e97559e7ef2f38",
"zh:9f73f19fdc340c443693dc03f1a145c6bd0ee5fd425eab7473d06abbe39b99d7",
"zh:9ff008b6737e880f191b4be6dfcef95ff019969dd787c44a58c2d7d6aaf6623b",
"zh:be297f1515e9ac63886e3e092a0bcd10aa8aa2b69c2b0995ce4e069176b07a95",
"zh:f569b65999264a9416862bca5cd2a6177d94ccb0424f3a4ef424428912b9cb3c",
"zh:fb29a566e7698cfae477f3efa3bba38526ec8343355763178c6e9c96e51399f3",
"zh:fbc3b625733ce5f0970fa8d9743f6db51064c168d6be5fc7a5e3d1a54af28bb7",
]
}
provider "registry.terraform.io/hashicorp/local" {
version = "2.2.3"
constraints = "2.2.3"
hashes = [
"h1:aWp5iSUxBGgPv1UnV5yag9Pb0N+U1I0sZb38AXBFO8A=",
"zh:04f0978bb3e052707b8e82e46780c371ac1c66b689b4a23bbc2f58865ab7d5c0",
"zh:6484f1b3e9e3771eb7cc8e8bab8b35f939a55d550b3f4fb2ab141a24269ee6aa",
"zh:78a56d59a013cb0f7eb1c92815d6eb5cf07f8b5f0ae20b96d049e73db915b238",
"zh:78d5eefdd9e494defcb3c68d282b8f96630502cac21d1ea161f53cfe9bb483b3",
"zh:8aa9950f4c4db37239bcb62e19910c49e47043f6c8587e5b0396619923657797",
"zh:996beea85f9084a725ff0e6473a4594deb5266727c5f56e9c1c7c62ded6addbb",
"zh:9a7ef7a21f48fabfd145b2e2a4240ca57517ad155017e86a30860d7c0c109de3",
"zh:a63e70ac052aa25120113bcddd50c1f3cfe61f681a93a50cea5595a4b2cc3e1c",
"zh:a6e8d46f94108e049ad85dbed60354236dc0b9b5ec8eabe01c4580280a43d3b8",
"zh:bb112ce7efbfcfa0e65ed97fa245ef348e0fd5bfa5a7e4ab2091a9bd469f0a9e",
"zh:d7bec0da5c094c6955efed100f3fe22fca8866859f87c025be1760feb174d6d9",
"zh:fb9f271b72094d07cef8154cd3d50e9aa818a0ea39130bc193132ad7b23076fd",
]
}
provider "registry.terraform.io/hashicorp/random" {
version = "3.4.2"
constraints = "3.4.2"
hashes = [
"h1:PIIfeOjmPoQRHfMM7MDr7qY3mQqD4F+38Dmq8pjvUUs=",
"zh:1e61d226778aefd01c0e139c0ad709b61e9ae4b33d72301b922bd3d000b76eee",
"zh:3c3295c3d2e9c3f9d60d557ee8faf2a30bd15f59f2c38ed13f50a3220dd027d0",
"zh:6661b4953b875857c3ac99fb1006daf314acebf2d1748045d208ebc8cbc647cd",
"zh:6e1823a349ceea5e4e0c684561473f57c46f73d7c197c39904d031ce6654bfb8",
"zh:78d5eefdd9e494defcb3c68d282b8f96630502cac21d1ea161f53cfe9bb483b3",
"zh:8f8e6fd15e5228f1935c63d79bf3074f645ddba1350756acfc968b2a05bf85ee",
"zh:939a78da13a7932bd5429f0c77debe907bf9d6c6a26af50fd4d9f32ee16ea5a6",
"zh:995a592acbcde12f0d34ff5c3b74ec7054743315684b72b927bdc0d33e0e7c4d",
"zh:a9f8b88fe365ed9996d3386b415cabb445cf9d6e4b0e0b73f58af3aa31f1fa3d",
"zh:dda7c698cf92170665ca3ac1ccdc2177c0bec4807e69075422ae9d5c5308adbd",
"zh:eff42af6313499db0b3177a82851e0f2d2706e81cab11372d7d3673c41b15b9c",
"zh:fcd6826d4398147314620401a5908dd35c6f2ebac7e7d3a7d77078dbc7c5a0e6",
]
}
|
AzureTRE/templates/shared_services/gitea/terraform/.terraform.lock.hcl/0
|
{
"file_path": "AzureTRE/templates/shared_services/gitea/terraform/.terraform.lock.hcl",
"repo_id": "AzureTRE",
"token_count": 2045
}
| 113 |
#!/bin/bash
# Configure Nexus to use certificate to serve proxies over https
set -o errexit
set -o pipefail
set -o nounset
# set -o xtrace
echo "Setting up Nexus SSL..."
# Import ssl cert to keystore within Nexus volume
keystore_timeout=60
echo 'Checking for nexus-data/keystores directory...'
while [ ! -d /etc/nexus-data/keystores ]; do
# Wait for /keystore dir to be created by container first
if [ $keystore_timeout == 0 ]; then
echo 'ERROR - Timeout while waiting for Nexus to create nexus-data/keystores'
exit 1
fi
sleep 5
((keystore_timeout--))
done
downloaded_cert_path="/var/lib/waagent/Microsoft.Azure.KeyVault.Store/${VAULT_NAME}.${SSL_CERT_NAME}"
cert_timeout=60
echo 'Waiting for cert to be downloaded from KV...'
while [ ! -f "$downloaded_cert_path" ]; do
if [ $cert_timeout == 0 ]; then
echo 'ERROR - Timeout while waiting!'
exit 1
fi
sleep 5
((cert_timeout--))
done
keystore_file_name=ssl.keystore
cert_password=$(openssl rand -base64 32)
rm -f temp.p12
openssl pkcs12 -export -inkey "$downloaded_cert_path" -in "$downloaded_cert_path" -out temp.p12 -password "pass:$cert_password"
rm -f /etc/nexus-data/keystores/"$keystore_file_name"
keytool -v -importkeystore -noprompt -srckeystore temp.p12 -srcstoretype PKCS12 -srcstorepass "$cert_password" \
-destkeystore /etc/nexus-data/keystores/"$keystore_file_name" -deststoretype PKCS12 -deststorepass "$cert_password"
rm -f temp.p12
# Configure Jetty instance within Nexus to consume ssl cert
echo 'Modifying Nexus Jetty configuration to enable ssl...'
mkdir -p /etc/nexus-data/etc/jetty
# -- first need to copy default Jetty config to persistent volume so isn't overwritten on restart
docker exec -u root nexus cp /opt/sonatype/nexus/etc/jetty/jetty-https.xml /nexus-data/etc/jetty/
# -- then we replace password values with the ssl cert keystore password
xmlstarlet ed -P --inplace \
-u "/Configure[@id='Server']/New[@id='sslContextFactory']/Set[@name='KeyStorePassword']" \
-v "$cert_password" /etc/nexus-data/etc/jetty/jetty-https.xml
xmlstarlet ed -P --inplace \
-u "/Configure[@id='Server']/New[@id='sslContextFactory']/Set[@name='KeyManagerPassword']" \
-v "$cert_password" /etc/nexus-data/etc/jetty/jetty-https.xml
xmlstarlet ed -P --inplace \
-u "/Configure[@id='Server']/New[@id='sslContextFactory']/Set[@name='TrustStorePassword']" \
-v "$cert_password" /etc/nexus-data/etc/jetty/jetty-https.xml
# -- then update the location of our keystore
xmlstarlet ed -P --inplace \
-u "/Configure[@id='Server']/New[@id='sslContextFactory']/Set[@name='KeyStorePath']" \
-v /nexus-data/keystores/"$keystore_file_name" /etc/nexus-data/etc/jetty/jetty-https.xml
xmlstarlet ed -P --inplace \
-u "/Configure[@id='Server']/New[@id='sslContextFactory']/Set[@name='TrustStorePath']" \
-v /nexus-data/keystores/"$keystore_file_name" /etc/nexus-data/etc/jetty/jetty-https.xml
# Add jetty configuration and ssl port to Nexus properties
cat >> /etc/nexus-data/etc/nexus.properties <<'EOF'
application-port-ssl=8443
nexus-args=$${jetty.etc}/jetty.xml,$${jetty.etc}/jetty-http.xml,$${jetty.etc}/jetty-requestlog.xml,/nexus-data/etc/jetty/jetty-https.xml
EOF
# Restart the container for changes to take effect
docker restart nexus
echo 'Nexus ssl configuration completed.'
|
AzureTRE/templates/shared_services/sonatype-nexus-vm/scripts/configure_nexus_ssl.sh/0
|
{
"file_path": "AzureTRE/templates/shared_services/sonatype-nexus-vm/scripts/configure_nexus_ssl.sh",
"repo_id": "AzureTRE",
"token_count": 1156
}
| 114 |
{
"schemaType": "ParameterSet",
"schemaVersion": "1.0.1",
"namespace": "",
"name": "tre-service-azureml",
"parameters": [
{
"name": "workspace_id",
"source": {
"env": "WORKSPACE_ID"
}
},
{
"name": "id",
"source": {
"env": "ID"
}
},
{
"name": "tre_id",
"source": {
"env": "TRE_ID"
}
},
{
"name": "display_name",
"source": {
"env": "DISPLAY_NAME"
}
},
{
"name": "description",
"source": {
"env": "DESCRIPTION"
}
},
{
"name": "address_space",
"source": {
"env": "ADDRESS_SPACE"
}
},
{
"name": "is_exposed_externally",
"source": {
"env": "IS_EXPOSED_EXTERNALLY"
}
},
{
"name": "tfstate_container_name",
"source": {
"env": "TERRAFORM_STATE_CONTAINER_NAME"
}
},
{
"name": "tfstate_resource_group_name",
"source": {
"env": "MGMT_RESOURCE_GROUP_NAME"
}
},
{
"name": "tfstate_storage_account_name",
"source": {
"env": "MGMT_STORAGE_ACCOUNT_NAME"
}
},
{
"name": "arm_environment",
"source": {
"env": "ARM_ENVIRONMENT"
}
}
]
}
|
AzureTRE/templates/workspace_services/azureml/parameters.json/0
|
{
"file_path": "AzureTRE/templates/workspace_services/azureml/parameters.json",
"repo_id": "AzureTRE",
"token_count": 738
}
| 115 |
variable "workspace_id" {
type = string
}
variable "tre_id" {
type = string
}
variable "tre_resource_id" {
type = string
}
variable "display_name" {
type = string
}
variable "description" {
type = string
}
variable "is_exposed_externally" {
type = bool
}
variable "address_space" {
type = string
}
variable "arm_tenant_id" {
type = string
}
variable "auth_tenant_id" {
type = string
description = "Used to authenticate into the AAD Tenant to get app role members"
}
variable "auth_client_id" {
type = string
description = "Used to authenticate into the AAD Tenant to get app role members"
}
variable "auth_client_secret" {
type = string
sensitive = true
description = "Used to authenticate into the AAD Tenant to get app role members"
}
variable "arm_environment" {
type = string
}
variable "azure_environment" {
type = string
}
|
AzureTRE/templates/workspace_services/azureml/terraform/variables.tf/0
|
{
"file_path": "AzureTRE/templates/workspace_services/azureml/terraform/variables.tf",
"repo_id": "AzureTRE",
"token_count": 304
}
| 116 |
# syntax=docker/dockerfile-upstream:1.4.0
FROM --platform=linux/amd64 debian:bullseye-slim
# PORTER_INIT
RUN rm -f /etc/apt/apt.conf.d/docker-clean; echo 'Binary::apt::APT::Keep-Downloaded-Packages "true";' > /etc/apt/apt.conf.d/keep-cache
# Install git - required for https://registry.terraform.io/modules/claranet/regions/azurerm
RUN --mount=type=cache,target=/var/cache/apt --mount=type=cache,target=/var/lib/apt \
apt-get update && apt-get install --no-install-recommends -y git
# PORTER_MIXINS
# Use the BUNDLE_DIR build argument to copy files into the bundle
COPY --link . ${BUNDLE_DIR}/
|
AzureTRE/templates/workspace_services/databricks/Dockerfile.tmpl/0
|
{
"file_path": "AzureTRE/templates/workspace_services/databricks/Dockerfile.tmpl",
"repo_id": "AzureTRE",
"token_count": 233
}
| 117 |
ID="__CHANGE_ME__"
WORKSPACE_ID="__CHANGE_ME__"
MGMT_ACR_NAME="__CHANGE_ME__"
|
AzureTRE/templates/workspace_services/gitea/.env.sample/0
|
{
"file_path": "AzureTRE/templates/workspace_services/gitea/.env.sample",
"repo_id": "AzureTRE",
"token_count": 40
}
| 118 |
resource "random_password" "password" {
length = 20
min_upper = 2
min_lower = 2
min_numeric = 2
min_special = 2
}
resource "azurerm_mysql_flexible_server" "gitea" {
name = "mysql-${local.service_resource_name_suffix}"
resource_group_name = data.azurerm_resource_group.ws.name
location = data.azurerm_resource_group.ws.location
administrator_login = "mysqladmin"
administrator_password = random_password.password.result
sku_name = local.sql_sku[var.sql_sku].value
version = "8.0.21"
backup_retention_days = 7
geo_redundant_backup_enabled = false
tags = local.workspace_service_tags
lifecycle { ignore_changes = [tags, zone] }
}
resource "azurerm_mysql_flexible_database" "gitea" {
name = "gitea"
resource_group_name = data.azurerm_resource_group.ws.name
server_name = azurerm_mysql_flexible_server.gitea.name
charset = "utf8"
collation = "utf8_unicode_ci"
}
moved {
from = azurerm_private_endpoint.private-endpoint
to = azurerm_private_endpoint.private_endpoint
}
resource "azurerm_private_endpoint" "private_endpoint" {
name = "pe-${azurerm_mysql_flexible_server.gitea.name}"
location = data.azurerm_resource_group.ws.location
resource_group_name = data.azurerm_resource_group.ws.name
subnet_id = data.azurerm_subnet.services.id
tags = local.workspace_service_tags
private_service_connection {
private_connection_resource_id = azurerm_mysql_flexible_server.gitea.id
name = "psc-${azurerm_mysql_flexible_server.gitea.name}"
subresource_names = ["mysqlServer"]
is_manual_connection = false
}
private_dns_zone_group {
name = module.terraform_azurerm_environment_configuration.private_links["privatelink.mysql.database.azure.com"]
private_dns_zone_ids = [data.azurerm_private_dns_zone.mysql.id]
}
lifecycle { ignore_changes = [tags] }
}
resource "azurerm_key_vault_secret" "db_password" {
name = "${azurerm_mysql_flexible_server.gitea.name}-administrator-password"
value = random_password.password.result
key_vault_id = data.azurerm_key_vault.ws.id
tags = local.workspace_service_tags
depends_on = [
azurerm_key_vault_access_policy.gitea_policy
]
lifecycle { ignore_changes = [tags] }
}
|
AzureTRE/templates/workspace_services/gitea/terraform/mysql.tf/0
|
{
"file_path": "AzureTRE/templates/workspace_services/gitea/terraform/mysql.tf",
"repo_id": "AzureTRE",
"token_count": 1166
}
| 119 |
#!/usr/bin/with-contenv sh
set -x
echo >&2 "starting oauth2-proxy"
cookiesecret=$(dd if=/dev/urandom bs=32 count=1 2>/dev/null | base64 | tr -d -- '\n' | tr -- '+/' '-_'; echo)
"${OAUTH2_PROXY_HOME}"/oauth2-proxy \
--provider oidc \
--skip-provider-button \
--cookie-secret "${cookiesecret}" \
--oidc-issuer-url "${OAUTH2_PROXY_OIDC_ISSUER_URL}" \
--upstream http://0.0.0.0:8080 \
--email-domain "${OAUTH2_PROXY_EMAIL_DOMAIN}" \
--redirect-url "${OAUTH2_PROXY_REDIRECT_URI}" --pass-host-header true \
--show-debug-on-error true --pass-authorization-header true --pass-user-headers true \
--http-address http://0.0.0.0:8085 \
--https-address https://0.0.0.0:8086 \
--cookie-secure true \
--reverse-proxy true \
--pass-access-token true \
--set-xauthrequest true \
--pass-basic-auth true \
--cookie-refresh 50m \
--insecure-oidc-allow-unverified-email true \
--oidc-groups-claim "roles" \
--oidc-email-claim "preferred_username" \
--scope "openid offline_access ${AUDIENCE}/user_impersonation profile"
|
AzureTRE/templates/workspace_services/guacamole/guacamole-server/docker/services/oauth/run/0
|
{
"file_path": "AzureTRE/templates/workspace_services/guacamole/guacamole-server/docker/services/oauth/run",
"repo_id": "AzureTRE",
"token_count": 405
}
| 120 |
/*
* Licensed to the Apache Software Foundation (ASF) under one
* or more contributor license agreements. See the NOTICE file
* distributed with this work for additional information
* regarding copyright ownership. The ASF licenses this file
* to you under the Apache License, Version 2.0 (the
* "License"); you may not use this file except in compliance
* with the License. You may obtain a copy of the License at
*
* http://www.apache.org/licenses/LICENSE-2.0
*
* Unless required by applicable law or agreed to in writing,
* software distributed under the License is distributed on an
* "AS IS" BASIS, WITHOUT WARRANTIES OR CONDITIONS OF ANY
* KIND, either express or implied. See the License for the
* specific language governing permissions and limitations
* under the License.
*/
package org.apache.guacamole.auth.azuretre.user;
import org.apache.guacamole.net.auth.AbstractAuthenticatedUser;
import org.apache.guacamole.net.auth.AuthenticationProvider;
import org.apache.guacamole.net.auth.Credentials;
public class AzureTREAuthenticatedUser extends AbstractAuthenticatedUser {
private final AuthenticationProvider authProvider;
private final Credentials credentials;
private final String objectId;
private final String accessToken;
public AzureTREAuthenticatedUser(final Credentials credentials,
final String accessToken,
final String username,
final String objectId,
final AuthenticationProvider provider) {
this.credentials = credentials;
this.accessToken = accessToken;
this.objectId = objectId;
this.authProvider = provider;
setIdentifier(username.toLowerCase());
}
@Override
public AuthenticationProvider getAuthenticationProvider() {
return authProvider;
}
@Override
public Credentials getCredentials() {
return credentials;
}
public String getAccessToken() {
return accessToken;
}
public String getObjectId() {
return objectId;
}
}
|
AzureTRE/templates/workspace_services/guacamole/guacamole-server/guacamole-auth-azure/src/main/java/org/apache/guacamole/auth/azuretre/user/AzureTREAuthenticatedUser.java/0
|
{
"file_path": "AzureTRE/templates/workspace_services/guacamole/guacamole-server/guacamole-auth-azure/src/main/java/org/apache/guacamole/auth/azuretre/user/AzureTREAuthenticatedUser.java",
"repo_id": "AzureTRE",
"token_count": 727
}
| 121 |
{
"$schema": "http://json-schema.org/draft-07/schema",
"$id": "https://github.com/microsoft/AzureTRE/templates/workspace_services/guacamole/user_resources/guacamole-azure-export-reviewvm/template_schema.json",
"type": "object",
"title": "Export review Virtual Machine",
"description": "Windows virtual machine for export review",
"required": [
],
"authorizedRoles": [
"AirlockManager"
],
"properties": {
"os_image": {
"$id": "#/properties/os_image",
"type": "string",
"title": "Windows image",
"description": "Select Windows image to use for VM",
"enum": [
"Server 2019 Data Science VM"
]
},
"vm_size": {
"$id": "#/properties/vm_size",
"type": "string",
"title": "VM Size",
"description": "Select size of VM",
"enum": [
"2 CPU | 8GB RAM"
],
"updateable": true
},
"airlock_request_sas_url": {
"$id": "#/properties/airlock_request_sas_url",
"type": "string",
"title": "Airlock request SAS Token",
"description": "SAS Token for airlock request",
"updateable": false,
"sensitive": true
}
}
}
|
AzureTRE/templates/workspace_services/guacamole/user_resources/guacamole-azure-export-reviewvm/template_schema.json/0
|
{
"file_path": "AzureTRE/templates/workspace_services/guacamole/user_resources/guacamole-azure-export-reviewvm/template_schema.json",
"repo_id": "AzureTRE",
"token_count": 568
}
| 122 |
#!/bin/bash
set -o errexit
set -o pipefail
# set -o nounset
# Uncomment this line to see each command for debugging (careful: this will show secrets!)
# set -o xtrace
# Remove apt sources not included in sources.list file
sudo rm -f /etc/apt/sources.list.d/*
# Update apt packages from configured Nexus sources
sudo apt-get update
# Install xrdp so Guacamole can connect via RDP
sudo apt-get install xrdp -y
sudo adduser xrdp ssl-cert
# Install desktop environment if image doesn't have one already
if [ "${INSTALL_UI}" -eq 1 ]; then
sudo apt-get install xorg xfce4 xfce4-goodies dbus-x11 x11-xserver-utils -y
echo xfce4-session > ~/.xsession
fi
# Fix for blank screen on DSVM (/sh -> /bash due to conflict with profile.d scripts)
sudo sed -i 's|!/bin/sh|!/bin/bash|g' /etc/xrdp/startwm.sh
# Make sure xrdp service starts up with the system
sudo systemctl enable xrdp
if [ "${SHARED_STORAGE_ACCESS}" -eq 1 ]; then
# Install required packages
sudo apt-get install autofs -y
# Pass in required variables
storageAccountName="${STORAGE_ACCOUNT_NAME}"
storageAccountKey="${STORAGE_ACCOUNT_KEY}"
httpEndpoint="${HTTP_ENDPOINT}"
fileShareName="${FILESHARE_NAME}"
mntRoot="/fileshares"
credentialRoot="/etc/smbcredentials"
mntPath="$mntRoot/$fileShareName"
# shellcheck disable=SC2308
smbPath=$(echo "$httpEndpoint" | cut -c7-"$(expr length "$httpEndpoint")")$fileShareName
smbCredentialFile="$credentialRoot/$storageAccountName.cred"
# Create required file paths
sudo mkdir -p "$mntPath"
sudo mkdir -p "/etc/smbcredentials"
sudo mkdir -p $mntRoot
### Auto FS to persist storage
# Create credential file
if [ ! -f "$smbCredentialFile" ]; then
echo "username=$storageAccountName" | sudo tee "$smbCredentialFile" > /dev/null
echo "password=$storageAccountKey" | sudo tee -a "$smbCredentialFile" > /dev/null
else
echo "The credential file $smbCredentialFile already exists, and was not modified."
fi
# Change permissions on the credential file so only root can read or modify the password file.
sudo chmod 600 "$smbCredentialFile"
# Configure autofs
echo "$fileShareName -fstype=cifs,rw,dir_mode=0777,credentials=$smbCredentialFile :$smbPath" | sudo tee /etc/auto.fileshares > /dev/null
echo "$mntRoot /etc/auto.fileshares --timeout=60" | sudo tee /etc/auto.master > /dev/null
# Restart service to register changes
sudo systemctl restart autofs
# Autofs mounts when accessed for 60 seconds. Folder created for constant visible mount
sudo ln -s "$mntPath" "/$fileShareName"
fi
### Anaconda Config
if [ "${CONDA_CONFIG}" -eq 1 ]; then
export PATH="/anaconda/condabin":$PATH
export PATH="/anaconda/bin":$PATH
export PATH="/anaconda/envs/py38_default/bin":$PATH
conda config --add channels "${NEXUS_PROXY_URL}"/repository/conda-mirror/main/ --system
conda config --add channels "${NEXUS_PROXY_URL}"/repository/conda-repo/main/ --system
conda config --remove channels defaults --system
conda config --set channel_alias "${NEXUS_PROXY_URL}"/repository/conda-mirror/ --system
fi
# Docker install and config
sudo apt-get install -y ca-certificates curl gnupg lsb-release
sudo apt-get install -y docker-ce docker-ce-cli containerd.io docker-compose-plugin jq
jq -n --arg proxy "${NEXUS_PROXY_URL}:8083" '{"registry-mirrors": [$proxy]}' > /etc/docker/daemon.json
sudo systemctl daemon-reload
sudo systemctl restart docker
# R config
sudo echo -e "local({\n r <- getOption(\"repos\")\n r[\"Nexus\"] <- \"""${NEXUS_PROXY_URL}\"/repository/r-proxy/\"\n options(repos = r)\n})" | sudo tee /etc/R/Rprofile.site
|
AzureTRE/templates/workspace_services/guacamole/user_resources/guacamole-azure-linuxvm/terraform/vm_config.sh/0
|
{
"file_path": "AzureTRE/templates/workspace_services/guacamole/user_resources/guacamole-azure-linuxvm/terraform/vm_config.sh",
"repo_id": "AzureTRE",
"token_count": 1262
}
| 123 |
Remove-Item -LiteralPath "C:\AzureData" -Force -Recurse
$ErrorActionPreference = "Stop"
if( ${SharedStorageAccess} -eq 1 )
{
$Command = "net use z: \\${StorageAccountFileHost}\${FileShareName} /u:AZURE\${StorageAccountName} ${StorageAccountKey}"
$Command | Out-File "C:\ProgramData\Start Menu\Programs\StartUp\attach_storage.cmd" -encoding ascii
}
$PipConfigFolderPath = "C:\ProgramData\pip\"
If(!(Test-Path $PipConfigFolderPath))
{
New-Item -ItemType Directory -Force -Path $PipConfigFolderPath
}
$PipConfigFilePath = $PipConfigFolderPath + "pip.ini"
$ConfigBody = @"
[global]
index = ${nexus_proxy_url}/repository/pypi/pypi
index-url = ${nexus_proxy_url}/repository/pypi/simple
trusted-host = ${nexus_proxy_url}
"@
# We need to write the ini file in UTF8 (No BOM) as pip won't understand Powershell's default encoding (unicode)
$Utf8NoBomEncoding = New-Object System.Text.UTF8Encoding $False
[System.IO.File]::WriteAllLines($PipConfigFilePath, $ConfigBody, $Utf8NoBomEncoding)
### Anaconda Config
if( ${CondaConfig} -eq 1 )
{
conda config --add channels ${nexus_proxy_url}/repository/conda-mirror/main/ --system
conda config --add channels ${nexus_proxy_url}/repository/conda-repo/main/ --system
conda config --remove channels defaults --system
conda config --set channel_alias ${nexus_proxy_url}/repository/conda-mirror/ --system
}
# Docker proxy config
$DaemonConfig = @"
{
"registry-mirrors": ["${nexus_proxy_url}:8083"]
}
"@
$DaemonConfig | Out-File -Encoding Ascii ( New-Item -Path $env:ProgramData\docker\config\daemon.json -Force )
# R config
# $RconfigFilePathWindows = C:\Progra~1\R\4.1.2\etc\Rprofile.site
#Add-Content $RconfigFilePathWindows "local({`n r <- getOption(`"repos`")`n r[`"Nexus`"] <- `"${nexus_proxy_url}/repository/r-proxy/`"`n options(repos = r)`n})"
# echo "local({`n r <- getOption(`"repos`")`n r[`"Nexus`"] <- `"${nexus_proxy_url}/repository/r-proxy/`"`n options(repos = r)`n})" > $RconfigFilePathWindows
$RConfig = @"
local({
r <- getOption("repos")
r["Nexus"] <- "${nexus_proxy_url}/repository/r-proxy/"
options(repos = r)
})
"@
$RConfig | Out-File -Encoding Ascii ( New-Item -Path $Env:ProgramFiles\R\R-4.1.2\etc\Rprofile.site -Force )
|
AzureTRE/templates/workspace_services/guacamole/user_resources/guacamole-azure-windowsvm/terraform/vm_config.ps1/0
|
{
"file_path": "AzureTRE/templates/workspace_services/guacamole/user_resources/guacamole-azure-windowsvm/terraform/vm_config.ps1",
"repo_id": "AzureTRE",
"token_count": 877
}
| 124 |
{
"$schema": "https://schema.management.azure.com/schemas/2019-04-01/deploymentTemplate.json#",
"contentVersion": "1.0.0.0",
"parameters": {
"vnet_name": {
"type": "String"
},
"location": {
"type": "String",
"metadata": {
"description": "Specifies the location for all resources."
}
},
"workspace_name": {
"type": "String"
},
"cluster_name": {
"type": "String"
},
"subnet_name": {
"type": "String"
},
"admin_username": {
"type": "String",
"defaultValue": "azureuser"
},
"admin_user_password": {
"type": "SecureString"
},
"vm_size_sku": {
"type": "String",
"defaultValue": "Standard_ND24s"
},
"min_node_count": {
"type": "Int",
"defaultValue": 0
},
"max_node_count": {
"type": "Int"
}
},
"variables": {},
"resources": [
{
"type": "Microsoft.MachineLearningServices/workspaces/computes",
"apiVersion": "2021-01-01",
"name": "[concat(parameters('workspace_name'),'/',parameters('cluster_name'))]",
"location": "[parameters('location')]",
"identity": {
"type": "SystemAssigned"
},
"properties": {
"computeType": "AmlCompute",
"computeLocation": "[parameters('location')]",
"properties": {
"vmSize": "[parameters('vm_size_sku')]",
"vmPriority": "Dedicated",
"scaleSettings": {
"minNodeCount": "[parameters('min_node_count')]",
"maxNodeCount": "[parameters('max_node_count')]"
},
"userAccountCredentials": {
"adminUserName": "[parameters('admin_username')]",
"adminUserPassword": "[parameters('admin_user_password')]"
},
"remoteLoginPortPublicAccess": "Enabled",
"enableNodePublicIp": false,
"subnet": {
"id": "[resourceId('Microsoft.Network/virtualNetworks/subnets', parameters('vnet_name'), parameters('subnet_name'))]"
}
}
}
}
],
"outputs": {
"cluster_principal_id": {
"value": "[reference(resourceId('Microsoft.MachineLearningServices/workspaces/computes', parameters('workspace_name'),parameters('cluster_name')),'2020-05-15-preview', 'Full').identity.principalId]",
"type": "String"
}
}
}
|
AzureTRE/templates/workspace_services/innereye/terraform/nopipcompute/deploypl_compute_cluster.json/0
|
{
"file_path": "AzureTRE/templates/workspace_services/innereye/terraform/nopipcompute/deploypl_compute_cluster.json",
"repo_id": "AzureTRE",
"token_count": 1562
}
| 125 |
{
"$schema": "http://json-schema.org/draft-07/schema",
"$id": "https://github.com/microsoft/AzureTRE/templates/workspace_services/mlflow/template_schema.json",
"type": "object",
"title": "MLflow",
"description": "MLflow server to manage machine learning lifecycle.",
"required": [],
"properties": {
"display_name": {
"type": "string",
"title": "Name for the workspace service",
"description": "The name of the workspace service to be displayed to users",
"default": "MLflow",
"updateable": true
},
"description": {
"type": "string",
"title": "Description of the workspace service",
"description": "Description of the workspace service",
"default": "MLflow is an open source platform to manage the ML lifecycle, including experimentation, reproducibility, deployment, and a central model registry.",
"updateable": true
},
"overview": {
"type": "string",
"title": "Workspace Service Overview",
"description": "Long form description of the workspace service, in markdown syntax",
"default": "MLflow is an open source platform to manage the ML lifecycle, including experimentation, reproducibility, deployment, and a central model registry. Documentation can be found here: [https://mlflow.org/docs/latest/index.html](https://mlflow.org/docs/latest/index.html)"
},
"is_exposed_externally": {
"$id": "#/properties/is_exposed_externally",
"type": "boolean",
"title": "Expose externally",
"description": "Is MLflow accessible from outside of the workspace network.",
"default": false
}
},
"uiSchema": {
"is_exposed_externally": {
"classNames": "tre-hidden"
}
}
}
|
AzureTRE/templates/workspace_services/mlflow/template_schema.json/0
|
{
"file_path": "AzureTRE/templates/workspace_services/mlflow/template_schema.json",
"repo_id": "AzureTRE",
"token_count": 595
}
| 126 |
{
"$schema": "http://json-schema.org/draft-07/schema",
"$id": "https://github.com/microsoft/AzureTRE/templates/workspace_services/sql/template_schema.json",
"type": "object",
"title": "MySQL Workspace Service",
"description": "Provides MySQL within the workspace",
"required": [],
"properties": {
"sql_sku": {
"$id": "#/properties/sql_sku",
"type": "string",
"title": "MySQL server SKU",
"description": "MySQL server SKU",
"updateable": true,
"enum": [
"B | 4GB 2vCores",
"GP | 8GB 2vCores",
"BC | 16GB 2vCores"
],
"default": "B | 4GB 2vCores"
},
"storage_mb": {
"$id": "#/properties/storage_mb",
"type": "number",
"title": "Max storage allowed for a server",
"description": "Max storage allowed for a server",
"default": 5120
},
"db_name": {
"$id": "#/properties/db_name",
"type": "string",
"title": "Database name",
"description": "Database name",
"default": "tredb"
}
}
}
|
AzureTRE/templates/workspace_services/mysql/template_schema.json/0
|
{
"file_path": "AzureTRE/templates/workspace_services/mysql/template_schema.json",
"repo_id": "AzureTRE",
"token_count": 465
}
| 127 |
#!/bin/bash
set -o errexit
set -o pipefail
set -o nounset
link_name="core"
result=$(az network private-dns link vnet list --resource-group "${RESOURCE_GROUP}" -z "${DNS_ZONE_NAME}" --query "[?name=='${link_name}'] | length(@)")
if [[ "${result}" == 0 ]];
then
az network private-dns link vnet create \
--name ${link_name} --resource-group "${RESOURCE_GROUP}" --virtual-network "${VNET}" --zone-name "${DNS_ZONE_NAME}" \
--registration-enabled false
else
echo "Zone already linked."
fi
|
AzureTRE/templates/workspace_services/ohdsi/scripts/postgres_dns_link.sh/0
|
{
"file_path": "AzureTRE/templates/workspace_services/ohdsi/scripts/postgres_dns_link.sh",
"repo_id": "AzureTRE",
"token_count": 186
}
| 128 |
variable "location" {
type = string
}
variable "tre_id" {
type = string
}
variable "ws_resource_group_name" {
type = string
}
variable "enable_local_debugging" {
type = bool
}
variable "services_subnet_id" {
type = string
}
variable "airlock_processor_subnet_id" {
type = string
}
variable "short_workspace_id" {
type = string
}
variable "tre_workspace_tags" {
type = map(string)
}
variable "arm_environment" {
type = string
}
|
AzureTRE/templates/workspaces/base/terraform/airlock/variables.tf/0
|
{
"file_path": "AzureTRE/templates/workspaces/base/terraform/airlock/variables.tf",
"repo_id": "AzureTRE",
"token_count": 157
}
| 129 |
output "vnet_id" {
value = azurerm_virtual_network.ws.id
}
output "services_subnet_id" {
value = azurerm_subnet.services.id
}
output "vaultcore_zone_id" {
value = data.azurerm_private_dns_zone.vaultcore.id
}
output "filecore_zone_id" {
value = data.azurerm_private_dns_zone.filecore.id
}
output "blobcore_zone_id" {
value = data.azurerm_private_dns_zone.blobcore.id
}
output "dfscore_zone_id" {
value = data.azurerm_private_dns_zone.dfscore.id
}
output "airlock_processor_subnet_id" {
value = data.azurerm_subnet.airlockprocessor.id
}
output "azure_monitor_dns_zone_id" {
value = azurerm_private_dns_zone.azure_monitor.id
}
output "azure_monitor_oms_opinsights_dns_zone_id" {
value = azurerm_private_dns_zone.azure_monitor_oms_opinsights.id
}
output "azure_monitor_ods_opinsights_dns_zone_id" {
value = azurerm_private_dns_zone.azure_monitor_ods_opinsights.id
}
output "azure_monitor_agentsvc_dns_zone_id" {
value = azurerm_private_dns_zone.azure_monitor_agentsvc.id
}
|
AzureTRE/templates/workspaces/base/terraform/network/outputs.tf/0
|
{
"file_path": "AzureTRE/templates/workspaces/base/terraform/network/outputs.tf",
"repo_id": "AzureTRE",
"token_count": 423
}
| 130 |
import React, { useContext } from 'react';
import { Nav, INavLinkGroup } from '@fluentui/react/lib/Nav';
import { useNavigate } from 'react-router-dom';
import { AppRolesContext } from '../../contexts/AppRolesContext';
import { RoleName } from '../../models/roleNames';
export const LeftNav: React.FunctionComponent = () => {
const navigate = useNavigate();
const appRolesCtx = useContext(AppRolesContext);
const navLinkGroups: INavLinkGroup[] = [
{
links: [
{
name: 'Workspaces',
url: '/',
key: '/',
icon: 'WebAppBuilderFragment'
}
],
},
];
// show shared-services link if TRE Admin
if (appRolesCtx.roles.includes(RoleName.TREAdmin)) {
navLinkGroups[0].links.push(
{
name: 'Shared Services',
url: '/shared-services',
key: 'shared-services',
icon: 'Puzzle'
});
}
return (
<Nav
onLinkClick={(e, item) => { e?.preventDefault(); item?.url && navigate(item.url) }}
ariaLabel="TRE Left Navigation"
groups={navLinkGroups}
/>
);
};
|
AzureTRE/ui/app/src/components/root/LeftNav.tsx/0
|
{
"file_path": "AzureTRE/ui/app/src/components/root/LeftNav.tsx",
"repo_id": "AzureTRE",
"token_count": 461
}
| 131 |
import React, { } from 'react';
import { IStackStyles, IStackTokens, Stack, Text } from '@fluentui/react';
import { ResourceCard } from '../shared/ResourceCard';
import { Resource } from '../../models/resource';
interface ResourceCardListProps {
resources: Array<Resource>,
selectResource?: (resource: Resource) => void,
updateResource: (resource: Resource) => void,
removeResource: (resource: Resource) => void
emptyText: string,
readonly?: boolean
isExposedExternally?: boolean
}
export const ResourceCardList: React.FunctionComponent<ResourceCardListProps> = (props: ResourceCardListProps) => {
return (
<>
{
props.resources.length > 0 ?
<Stack horizontal wrap styles={stackStyles} tokens={wrapStackTokens}>
{
props.resources.map((r:Resource, i:number) => {
return (
<Stack.Item key={i} style={gridItemStyles} >
<ResourceCard
resource={r}
selectResource={(resource: Resource) => props.selectResource && props.selectResource(resource)}
onUpdate={(resource: Resource) => props.updateResource(resource)}
onDelete={(resource: Resource) => props.removeResource(resource)}
itemId={i}
readonly={props.readonly}
isExposedExternally={r.properties.is_exposed_externally === undefined ? props.isExposedExternally : r.properties.is_exposed_externally} />
</Stack.Item>
)
})
}
</Stack> :
<Text variant="large" block>{props.emptyText}</Text>
}
</>
);
};
const stackStyles: IStackStyles = {
root: {
width: 'calc(100% - 20px)'
},
};
const wrapStackTokens: IStackTokens = { childrenGap: 20 };
const gridItemStyles: React.CSSProperties = {
alignItems: 'left',
display: 'flex',
width: 300,
background: '#f9f9f9'
};
|
AzureTRE/ui/app/src/components/shared/ResourceCardList.tsx/0
|
{
"file_path": "AzureTRE/ui/app/src/components/shared/ResourceCardList.tsx",
"repo_id": "AzureTRE",
"token_count": 855
}
| 132 |
import React, { useCallback, useContext, useEffect, useState } from 'react';
import { ColumnActionsMode, CommandBar, CommandBarButton, ContextualMenu, DirectionalHint, getTheme, IColumn, ICommandBarItemProps, Icon, IContextualMenuItem, IContextualMenuProps, Persona, PersonaSize, SelectionMode, ShimmeredDetailsList, Stack } from '@fluentui/react';
import { HttpMethod, useAuthApiCall } from '../../../hooks/useAuthApiCall';
import { ApiEndpoint } from '../../../models/apiEndpoints';
import { WorkspaceContext } from '../../../contexts/WorkspaceContext';
import { AirlockRequest, AirlockRequestAction, AirlockRequestStatus, AirlockRequestType } from '../../../models/airlock';
import moment from 'moment';
import { Route, Routes, useNavigate } from 'react-router-dom';
import { AirlockViewRequest } from './AirlockViewRequest';
import { LoadingState } from '../../../models/loadingState';
import { APIError } from '../../../models/exceptions';
import { ExceptionLayout } from '../ExceptionLayout';
import { AirlockNewRequest } from './AirlockNewRequest';
import { WorkspaceRoleName } from '../../../models/roleNames';
import { useAccount, useMsal } from '@azure/msal-react';
import { getFileTypeIconProps } from '@fluentui/react-file-type-icons';
export const Airlock: React.FunctionComponent = () => {
const [airlockRequests, setAirlockRequests] = useState([] as AirlockRequest[]);
const [requestColumns, setRequestColumns] = useState([] as IColumn[]);
const [orderBy, setOrderBy] = useState('updatedWhen');
const [orderAscending, setOrderAscending] = useState(false);
const [filters, setFilters] = useState(new Map<string, string>());
const [loadingState, setLoadingState] = useState(LoadingState.Loading);
const [contextMenuProps, setContextMenuProps] = useState<IContextualMenuProps>();
const [apiError, setApiError] = useState<APIError>();
const workspaceCtx = useContext(WorkspaceContext);
const apiCall = useAuthApiCall();
const theme = getTheme();
const navigate = useNavigate();
const { accounts } = useMsal();
const account = useAccount(accounts[0] || {});
// Get the airlock request data from API
const getAirlockRequests = useCallback(async () => {
setApiError(undefined);
setLoadingState(LoadingState.Loading);
try {
let requests: AirlockRequest[];
if (workspaceCtx.workspace) {
// Add any selected filters and orderBy
let query = '?';
filters.forEach((value, key) => {
query += `${key}=${value}&`;
});
if (orderBy) {
query += `order_by=${orderBy}&order_ascending=${orderAscending}&`;
}
// Call the Airlock requests API
const result = await apiCall(
`${ApiEndpoint.Workspaces}/${workspaceCtx.workspace.id}/${ApiEndpoint.AirlockRequests}${query.slice(0, -1)}`,
HttpMethod.Get,
workspaceCtx.workspaceApplicationIdURI
);
// Map the inner requests and the allowed user actions to state
requests = result.airlockRequests.map((r: {
airlockRequest: AirlockRequest,
allowedUserActions: Array<AirlockRequestAction>
}) => {
const request = r.airlockRequest;
request.allowedUserActions = r.allowedUserActions;
return request;
});
} else {
// TODO: Get all requests across workspaces
requests = [];
}
setAirlockRequests(requests);
setLoadingState(LoadingState.Ok);
} catch (err: any) {
err.userMessage = 'Error fetching airlock requests';
setApiError(err);
setLoadingState(LoadingState.Error);
}
}, [apiCall, workspaceCtx.workspace, workspaceCtx.workspaceApplicationIdURI, filters, orderBy, orderAscending]);
// Fetch new requests on first load and whenever filters/orderBy selection changes
useEffect(() => {
getAirlockRequests();
}, [filters, orderBy, orderAscending, getAirlockRequests]);
const orderRequests = (column: IColumn) => {
setOrderBy((o) => {
// If already selected, invert ordering
if (o === column.key) {
setOrderAscending((previous) => !previous);
return column.key;
}
return column.key;
});
};
// Open a context menu in the requests list for filtering and sorting
const openContextMenu = useCallback((column: IColumn, ev: React.MouseEvent<HTMLElement>, options: Array<string>) => {
const filterOptions = options.map(option => {
return {
key: option,
name: option,
canCheck: true,
checked: filters?.has(column.key) && filters.get(column.key) === option,
onClick: () => {
// Set filter or unset if already selected
setFilters((f) => {
if (f.get(column.key) === option) {
f.delete(column.key);
} else {
f.set(column.key, option);
}
// Return as a new map to trigger re-rendering
return new Map(f);
});
}
}
});
const items: IContextualMenuItem[] = [
{
key: 'sort',
name: 'Sort',
iconProps: { iconName: 'Sort' },
onClick: () => orderRequests(column)
},
{
key: 'filter',
name: 'Filter',
iconProps: { iconName: 'Filter' },
subMenuProps: {
items: filterOptions,
}
}
];
setContextMenuProps({
items: items,
target: ev.currentTarget as HTMLElement,
directionalHint: DirectionalHint.bottomCenter,
gapSpace: 0,
onDismiss: () => setContextMenuProps(undefined),
});
}, [filters]);
// Set the columns on initial render
useEffect(() => {
const orderByColumn = (ev: React.MouseEvent<HTMLElement>, column: IColumn) => {
orderRequests(column);
};
const columns: IColumn[] = [
{
key: 'fileIcon',
name: 'fileIcon',
minWidth: 16,
maxWidth: 16,
isIconOnly: true,
onRender: (request: AirlockRequest) => {
if (request.status === AirlockRequestStatus.Draft) {
return <Icon iconName="FolderOpen" style={{verticalAlign:'bottom', fontSize: 14}} />
} else if (request.files?.length > 0 && request.files[0].name) {
const fileType = request.files[0].name.split('.').pop();
return <Icon {...getFileTypeIconProps({ extension: fileType })} style={{verticalAlign:'bottom'}} />
} else {
return <Icon iconName="Page" style={{verticalAlign:'bottom', fontSize: 14}} />
}
}
},
{
key: 'title',
name: 'Title',
ariaLabel: 'Title of the airlock request',
minWidth: 150,
maxWidth: 300,
isResizable: true,
fieldName: 'title'
},
{
key: 'createdBy',
name: 'Creator',
ariaLabel: 'Creator of the airlock request',
minWidth: 150,
maxWidth: 200,
isResizable: true,
onRender: (request: AirlockRequest) => <Persona size={ PersonaSize.size24 } text={request.createdBy?.name} />,
isFiltered: filters.has('creator_user_id')
},
{
key: 'type',
name: 'Type',
ariaLabel: 'Whether the request is import or export',
minWidth: 70,
maxWidth: 100,
isResizable: true,
fieldName: 'type',
columnActionsMode: ColumnActionsMode.hasDropdown,
isSorted: orderBy === 'type',
isSortedDescending: !orderAscending,
onColumnClick: (ev, column) => openContextMenu(column, ev, Object.values(AirlockRequestType)),
onColumnContextMenu: (column, ev) =>
(column && ev) && openContextMenu(column, ev, Object.values(AirlockRequestType)),
isFiltered: filters.has('type')
},
{
key: 'status',
name: 'Status',
ariaLabel: 'Status of the request',
minWidth: 70,
isResizable: true,
fieldName: 'status',
columnActionsMode: ColumnActionsMode.hasDropdown,
isSorted: orderBy === 'status',
isSortedDescending: !orderAscending,
onColumnClick: (ev, column) => openContextMenu(column, ev, Object.values(AirlockRequestStatus)),
onColumnContextMenu: (column, ev) =>
(column && ev) && openContextMenu(column, ev, Object.values(AirlockRequestStatus)),
isFiltered: filters.has('status'),
onRender: (request: AirlockRequest) => request.status.replace("_", " ")
},
{
key: 'createdTime',
name: 'Created',
ariaLabel: 'When the request was created',
minWidth: 120,
data: 'number',
isResizable: true,
fieldName: 'createdTime',
isSorted: orderBy === 'createdTime',
isSortedDescending: !orderAscending,
onRender: (request: AirlockRequest) => {
return <span>{ moment.unix(request.createdWhen).format('DD/MM/YYYY') }</span>;
},
onColumnClick: orderByColumn
},
{
key: 'updatedWhen',
name: 'Updated',
ariaLabel: 'When the request was last updated',
minWidth: 120,
data: 'number',
isResizable: true,
fieldName: 'updatedWhen',
isSorted: orderBy === 'updatedWhen',
isSortedDescending: !orderAscending,
onRender: (request: AirlockRequest) => {
return <span>{ moment.unix(request.updatedWhen).fromNow() }</span>;
},
onColumnClick: orderByColumn
}
];
setRequestColumns(columns);
}, [openContextMenu, filters, orderAscending, orderBy]);
const handleNewRequest = async (newRequest: AirlockRequest) => {
await getAirlockRequests();
navigate(`/workspaces/${newRequest.workspaceId}/requests/${newRequest.id}`);
};
const quickFilters: ICommandBarItemProps[] = [
{
key: 'reset',
text: 'Clear filters',
iconProps: { iconName: 'ClearFilter' },
onClick: () => setFilters(new Map())
}
];
// If we can access the user's msal account, give option to filter by their user id
if (account) {
quickFilters.unshift({
key: 'myRequests',
text: 'My requests',
iconProps: { iconName: 'EditContact' },
onClick: () => {
const userId = account.localAccountId.split('.')[0];
setFilters(new Map([['creator_user_id', userId]]));
}
});
}
// Only show "Awaiting my review" filter if user in airlock manager role
if (workspaceCtx.roles?.includes(WorkspaceRoleName.AirlockManager)) {
quickFilters.unshift({
key: 'awaitingMyReview',
text: 'Awaiting my review',
iconProps: { iconName: 'TemporaryUser' },
// Currently we don't have assigned reviewers so this will be all requests in review status
onClick: () => setFilters(new Map([['status', 'in_review']]))
});
}
return (
<>
<Stack className="tre-panel">
<Stack.Item>
<Stack horizontal horizontalAlign="space-between">
<h1 style={{marginBottom: 0, marginRight: 30}}>Airlock</h1>
<Stack.Item grow>
<CommandBar items={quickFilters} ariaLabel="Quick filters" />
</Stack.Item>
<CommandBarButton
iconProps={{ iconName: 'refresh' }}
text="Refresh"
style={{ background: 'none', color: theme.palette.themePrimary }}
onClick={() => getAirlockRequests()}
/>
<CommandBarButton
iconProps={{ iconName: 'add' }}
text="New request"
style={{ background: 'none', color: theme.palette.themePrimary }}
onClick={() => navigate('new')}
/>
</Stack>
</Stack.Item>
</Stack>
{
apiError && <ExceptionLayout e={apiError} />
}
<div className="tre-resource-panel" style={{padding: '0px'}}>
<ShimmeredDetailsList
items={airlockRequests}
columns={requestColumns}
selectionMode={SelectionMode.none}
getKey={(item) => item?.id}
onItemInvoked={(item) => navigate(item.id)}
className="tre-table"
enableShimmer={loadingState === LoadingState.Loading}
/>
{
contextMenuProps && <ContextualMenu {...contextMenuProps}/>
}
{
airlockRequests.length === 0 && loadingState !== LoadingState.Loading && <div style={{textAlign: 'center', padding: '50px 10px 100px 10px'}}>
<h4>No requests found</h4>
{
filters.size > 0
? <small>There are no requests matching your selected filter(s).</small>
: <small>Looks like there are no airlock requests yet. Create a new request to get started.</small>
}
</div>
}
</div>
<Routes>
<Route path="new" element={
<AirlockNewRequest onCreateRequest={handleNewRequest}/>
} />
<Route path=":requestId" element={
<AirlockViewRequest requests={airlockRequests} onUpdateRequest={getAirlockRequests}/>
} />
</Routes>
</>
);
};
|
AzureTRE/ui/app/src/components/shared/airlock/Airlock.tsx/0
|
{
"file_path": "AzureTRE/ui/app/src/components/shared/airlock/Airlock.tsx",
"repo_id": "AzureTRE",
"token_count": 5547
}
| 133 |
import { getTheme, Icon, mergeStyles, Stack } from '@fluentui/react';
import React, { useContext } from 'react';
import { WorkspaceContext } from '../../contexts/WorkspaceContext';
export const WorkspaceHeader: React.FunctionComponent = () => {
const workspaceCtx = useContext(WorkspaceContext);
return (
<>
<Stack className={contentClass}>
<Stack.Item className='tre-workspace-header'>
<h4 style={{fontWeight: '400'}}>
<Icon iconName="CubeShape" style={{ marginRight: '8px', fontSize: '22px', verticalAlign: 'bottom' }} />
{workspaceCtx.workspace?.properties?.display_name}
</h4>
</Stack.Item>
</Stack>
</>
);
};
const theme = getTheme();
const contentClass = mergeStyles([
{
backgroundColor: theme.palette.themeDarker,
color: theme.palette.white,
lineHeight: '15px',
padding: '0 20px',
boxShadow: '0 1px 8px 0px #ccc'
}
]);
|
AzureTRE/ui/app/src/components/workspaces/WorkspaceHeader.tsx/0
|
{
"file_path": "AzureTRE/ui/app/src/components/workspaces/WorkspaceHeader.tsx",
"repo_id": "AzureTRE",
"token_count": 371
}
| 134 |
export enum ApiEndpoint {
Workspaces = 'workspaces',
WorkspaceServices = 'workspace-services',
UserResources = 'user-resources',
SharedServices = 'shared-services',
AirlockRequests = 'requests',
AirlockLink = 'link',
AirlockSubmit = 'submit',
AirlockCancel = 'cancel',
AirlockReview = 'review',
AirlockCreateReviewResource = 'review-user-resource',
WorkspaceTemplates = 'workspace-templates',
WorkspaceServiceTemplates = 'workspace-service-templates',
UserResourceTemplates = 'user-resource-templates',
SharedServiceTemplates = 'shared-service-templates',
Operations = 'operations',
History = 'history',
InvokeAction = 'invoke-action',
Costs = 'costs',
Metadata = ".metadata",
Health = "health"
}
|
AzureTRE/ui/app/src/models/apiEndpoints.ts/0
|
{
"file_path": "AzureTRE/ui/app/src/models/apiEndpoints.ts",
"repo_id": "AzureTRE",
"token_count": 265
}
| 135 |
import { ReportHandler } from 'web-vitals';
const reportWebVitals = (onPerfEntry?: ReportHandler) => {
if (onPerfEntry && onPerfEntry instanceof Function) {
import('web-vitals').then(({ getCLS, getFID, getFCP, getLCP, getTTFB }) => {
getCLS(onPerfEntry);
getFID(onPerfEntry);
getFCP(onPerfEntry);
getLCP(onPerfEntry);
getTTFB(onPerfEntry);
});
}
};
export default reportWebVitals;
|
AzureTRE/ui/app/src/reportWebVitals.ts/0
|
{
"file_path": "AzureTRE/ui/app/src/reportWebVitals.ts",
"repo_id": "AzureTRE",
"token_count": 182
}
| 136 |
# Support
Welcome to the BitBLAS support page! BitBLAS is a cutting-edge framework designed for generating high-performance CUDA/HIP code for BLAS operators. Whether you're working on projects like BitNet, GPTQ, or similar, BitBLAS is here to accelerate your development with its robust features.
## How to File Issues and Get Help
### Reporting Bugs or Requesting Features
If you encounter a bug or have a feature request, we encourage you to file an issue through our GitHub Issues page. Please follow these steps:
1. **Search Existing Issues**: Before creating a new issue, please search the existing ones to avoid duplicates.
2. **Create a New Issue**: If your issue is new, go ahead and file it as a new issue. Provide as much detail as possible to help us understand and address it efficiently.
### Seeking Help and Questions
For questions and help with using BitBLAS, we offer the following channels:
- **GitHub Discussions**: For community support, sharing ideas, and discussing best practices, please visit our [GitHub Discussions](https://github.com/YOUR_REPO/discussions).
- **Stack Overflow**: Use the tag `BitBLAS` when posting questions. This is monitored by our team and the community.
## Microsoft Support Policy
Support for BitBLAS is primarily provided through the above-mentioned community channels. We strive to address issues and questions in a timely manner, leveraging the collective knowledge and experience of the BitBLAS community.
## Contributing to BitBLAS
We warmly welcome contributions to the BitBLAS project. Whether it's improving the documentation, adding new features, or fixing bugs, your contributions are invaluable to us. Please refer to our [CONTRIBUTING.md](./CONTRIBUTING.md) file for more details on how to contribute.
Before submitting a pull request, you may need to agree to a Contributor License Agreement (CLA) declaring that you have the right to, and actually do, grant us the rights to use your contribution. The CLA process is straightforward and only needs to be completed once.
|
BitBLAS/SUPPORT.md/0
|
{
"file_path": "BitBLAS/SUPPORT.md",
"repo_id": "BitBLAS",
"token_count": 473
}
| 137 |
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