metadata

language:
  - en
bigbio_language:
  - English
license: unknown
multilinguality: monolingual
bigbio_license_shortname: UNKNOWN
pretty_name: tmVar v2
homepage: https://www.ncbi.nlm.nih.gov/research/bionlp/Tools/tmvar/
bigbio_pubmed: true
bigbio_public: true
bigbio_tasks:
  - NAMED_ENTITY_RECOGNITION
  - NAMED_ENTITY_DISAMBIGUATION

Dataset Card for tmVar v2

Dataset Description

Homepage: https://www.ncbi.nlm.nih.gov/research/bionlp/Tools/tmvar/
Pubmed: True
Public: True
Tasks: NER,NED

This dataset contains 158 PubMed articles manually annotated with mutation mentions of various kinds and dbsnp normalizations for each of them. It can be used for NER tasks and NED tasks, This dataset has a single split

Citation Information

@article{wei2018tmvar,
title={tmVar 2.0: integrating genomic variant information from literature with dbSNP and ClinVar for precision medicine},
author={Wei, Chih-Hsuan and Phan, Lon and Feltz, Juliana and Maiti, Rama and Hefferon, Tim and Lu, Zhiyong},
journal={Bioinformatics},
volume={34},
number={1},
pages={80--87},
year={2018},
publisher={Oxford University Press}
}