Unnamed: 0
int64 0
10k
| repository_name
stringlengths 7
54
| func_path_in_repository
stringlengths 5
223
| func_name
stringlengths 1
134
| whole_func_string
stringlengths 100
30.3k
| language
stringclasses 1
value | func_code_string
stringlengths 100
30.3k
| func_code_tokens
stringlengths 138
33.2k
| func_documentation_string
stringlengths 1
15k
| func_documentation_tokens
stringlengths 5
5.14k
| split_name
stringclasses 1
value | func_code_url
stringlengths 91
315
|
|---|---|---|---|---|---|---|---|---|---|---|---|
1,700 | MozillaSecurity/laniakea | laniakea/core/userdata.py | UserData.handle_import_tags | def handle_import_tags(userdata, import_root):
"""Handle @import(filepath)@ tags in a UserData script.
:param import_root: Location for imports.
:type import_root: str
:param userdata: UserData script content.
:type userdata: str
:return: UserData script with the contents of the imported files.
:rtype: str
"""
imports = re.findall('@import\((.*?)\)@', userdata) # pylint: disable=anomalous-backslash-in-string
if not imports:
return userdata
for filepath in imports:
logger.info('Processing "import" of %s', filepath)
import_path = os.path.join(import_root, filepath)
try:
with open(import_path) as fo:
content = fo.read()
userdata = userdata.replace('@import(%s)@' % filepath, content)
except FileNotFoundError:
raise UserDataException('Import path {} not found.'.format(import_path))
return userdata | python | def handle_import_tags(userdata, import_root):
"""Handle @import(filepath)@ tags in a UserData script.
:param import_root: Location for imports.
:type import_root: str
:param userdata: UserData script content.
:type userdata: str
:return: UserData script with the contents of the imported files.
:rtype: str
"""
imports = re.findall('@import\((.*?)\)@', userdata) # pylint: disable=anomalous-backslash-in-string
if not imports:
return userdata
for filepath in imports:
logger.info('Processing "import" of %s', filepath)
import_path = os.path.join(import_root, filepath)
try:
with open(import_path) as fo:
content = fo.read()
userdata = userdata.replace('@import(%s)@' % filepath, content)
except FileNotFoundError:
raise UserDataException('Import path {} not found.'.format(import_path))
return userdata | ['def', 'handle_import_tags', '(', 'userdata', ',', 'import_root', ')', ':', 'imports', '=', 're', '.', 'findall', '(', "'@import\\((.*?)\\)@'", ',', 'userdata', ')', '# pylint: disable=anomalous-backslash-in-string', 'if', 'not', 'imports', ':', 'return', 'userdata', 'for', 'filepath', 'in', 'imports', ':', 'logger', '.', 'info', '(', '\'Processing "import" of %s\'', ',', 'filepath', ')', 'import_path', '=', 'os', '.', 'path', '.', 'join', '(', 'import_root', ',', 'filepath', ')', 'try', ':', 'with', 'open', '(', 'import_path', ')', 'as', 'fo', ':', 'content', '=', 'fo', '.', 'read', '(', ')', 'userdata', '=', 'userdata', '.', 'replace', '(', "'@import(%s)@'", '%', 'filepath', ',', 'content', ')', 'except', 'FileNotFoundError', ':', 'raise', 'UserDataException', '(', "'Import path {} not found.'", '.', 'format', '(', 'import_path', ')', ')', 'return', 'userdata'] | Handle @import(filepath)@ tags in a UserData script.
:param import_root: Location for imports.
:type import_root: str
:param userdata: UserData script content.
:type userdata: str
:return: UserData script with the contents of the imported files.
:rtype: str | ['Handle', '@import', '(', 'filepath', ')', '@', 'tags', 'in', 'a', 'UserData', 'script', '.'] | train | https://github.com/MozillaSecurity/laniakea/blob/7e80adc6ae92c6c1332d4c08473bb271fb3b6833/laniakea/core/userdata.py#L112-L136 |
1,701 | pvlib/pvlib-python | pvlib/pvsystem.py | physicaliam | def physicaliam(aoi, n=1.526, K=4., L=0.002):
'''
Determine the incidence angle modifier using refractive index,
extinction coefficient, and glazing thickness.
physicaliam calculates the incidence angle modifier as described in
De Soto et al. "Improvement and validation of a model for
photovoltaic array performance", section 3. The calculation is based
on a physical model of absorbtion and transmission through a
cover.
Note: The authors of this function believe that eqn. 14 in [1] is
incorrect. This function uses the following equation in its place:
theta_r = arcsin(1/n * sin(aoi))
Parameters
----------
aoi : numeric
The angle of incidence between the module normal vector and the
sun-beam vector in degrees. Angles of 0 are replaced with 1e-06
to ensure non-nan results. Angles of nan will result in nan.
n : numeric, default 1.526
The effective index of refraction (unitless). Reference [1]
indicates that a value of 1.526 is acceptable for glass. n must
be a numeric scalar or vector with all values >=0. If n is a
vector, it must be the same size as all other input vectors.
K : numeric, default 4.0
The glazing extinction coefficient in units of 1/meters.
Reference [1] indicates that a value of 4 is reasonable for
"water white" glass. K must be a numeric scalar or vector with
all values >=0. If K is a vector, it must be the same size as
all other input vectors.
L : numeric, default 0.002
The glazing thickness in units of meters. Reference [1]
indicates that 0.002 meters (2 mm) is reasonable for most
glass-covered PV panels. L must be a numeric scalar or vector
with all values >=0. If L is a vector, it must be the same size
as all other input vectors.
Returns
-------
iam : numeric
The incident angle modifier
References
----------
[1] W. De Soto et al., "Improvement and validation of a model for
photovoltaic array performance", Solar Energy, vol 80, pp. 78-88,
2006.
[2] Duffie, John A. & Beckman, William A.. (2006). Solar Engineering
of Thermal Processes, third edition. [Books24x7 version] Available
from http://common.books24x7.com/toc.aspx?bookid=17160.
See Also
--------
getaoi
ephemeris
spa
ashraeiam
'''
zeroang = 1e-06
# hold a new reference to the input aoi object since we're going to
# overwrite the aoi reference below, but we'll need it for the
# series check at the end of the function
aoi_input = aoi
aoi = np.where(aoi == 0, zeroang, aoi)
# angle of reflection
thetar_deg = tools.asind(1.0 / n*(tools.sind(aoi)))
# reflectance and transmittance for normal incidence light
rho_zero = ((1-n) / (1+n)) ** 2
tau_zero = np.exp(-K*L)
# reflectance for parallel and perpendicular polarized light
rho_para = (tools.tand(thetar_deg - aoi) /
tools.tand(thetar_deg + aoi)) ** 2
rho_perp = (tools.sind(thetar_deg - aoi) /
tools.sind(thetar_deg + aoi)) ** 2
# transmittance for non-normal light
tau = np.exp(-K*L / tools.cosd(thetar_deg))
# iam is ratio of non-normal to normal incidence transmitted light
# after deducting the reflected portion of each
iam = ((1 - (rho_para + rho_perp) / 2) / (1 - rho_zero) * tau / tau_zero)
with np.errstate(invalid='ignore'):
# angles near zero produce nan, but iam is defined as one
small_angle = 1e-06
iam = np.where(np.abs(aoi) < small_angle, 1.0, iam)
# angles at 90 degrees can produce tiny negative values,
# which should be zero. this is a result of calculation precision
# rather than the physical model
iam = np.where(iam < 0, 0, iam)
# for light coming from behind the plane, none can enter the module
iam = np.where(aoi > 90, 0, iam)
if isinstance(aoi_input, pd.Series):
iam = pd.Series(iam, index=aoi_input.index)
return iam | python | def physicaliam(aoi, n=1.526, K=4., L=0.002):
'''
Determine the incidence angle modifier using refractive index,
extinction coefficient, and glazing thickness.
physicaliam calculates the incidence angle modifier as described in
De Soto et al. "Improvement and validation of a model for
photovoltaic array performance", section 3. The calculation is based
on a physical model of absorbtion and transmission through a
cover.
Note: The authors of this function believe that eqn. 14 in [1] is
incorrect. This function uses the following equation in its place:
theta_r = arcsin(1/n * sin(aoi))
Parameters
----------
aoi : numeric
The angle of incidence between the module normal vector and the
sun-beam vector in degrees. Angles of 0 are replaced with 1e-06
to ensure non-nan results. Angles of nan will result in nan.
n : numeric, default 1.526
The effective index of refraction (unitless). Reference [1]
indicates that a value of 1.526 is acceptable for glass. n must
be a numeric scalar or vector with all values >=0. If n is a
vector, it must be the same size as all other input vectors.
K : numeric, default 4.0
The glazing extinction coefficient in units of 1/meters.
Reference [1] indicates that a value of 4 is reasonable for
"water white" glass. K must be a numeric scalar or vector with
all values >=0. If K is a vector, it must be the same size as
all other input vectors.
L : numeric, default 0.002
The glazing thickness in units of meters. Reference [1]
indicates that 0.002 meters (2 mm) is reasonable for most
glass-covered PV panels. L must be a numeric scalar or vector
with all values >=0. If L is a vector, it must be the same size
as all other input vectors.
Returns
-------
iam : numeric
The incident angle modifier
References
----------
[1] W. De Soto et al., "Improvement and validation of a model for
photovoltaic array performance", Solar Energy, vol 80, pp. 78-88,
2006.
[2] Duffie, John A. & Beckman, William A.. (2006). Solar Engineering
of Thermal Processes, third edition. [Books24x7 version] Available
from http://common.books24x7.com/toc.aspx?bookid=17160.
See Also
--------
getaoi
ephemeris
spa
ashraeiam
'''
zeroang = 1e-06
# hold a new reference to the input aoi object since we're going to
# overwrite the aoi reference below, but we'll need it for the
# series check at the end of the function
aoi_input = aoi
aoi = np.where(aoi == 0, zeroang, aoi)
# angle of reflection
thetar_deg = tools.asind(1.0 / n*(tools.sind(aoi)))
# reflectance and transmittance for normal incidence light
rho_zero = ((1-n) / (1+n)) ** 2
tau_zero = np.exp(-K*L)
# reflectance for parallel and perpendicular polarized light
rho_para = (tools.tand(thetar_deg - aoi) /
tools.tand(thetar_deg + aoi)) ** 2
rho_perp = (tools.sind(thetar_deg - aoi) /
tools.sind(thetar_deg + aoi)) ** 2
# transmittance for non-normal light
tau = np.exp(-K*L / tools.cosd(thetar_deg))
# iam is ratio of non-normal to normal incidence transmitted light
# after deducting the reflected portion of each
iam = ((1 - (rho_para + rho_perp) / 2) / (1 - rho_zero) * tau / tau_zero)
with np.errstate(invalid='ignore'):
# angles near zero produce nan, but iam is defined as one
small_angle = 1e-06
iam = np.where(np.abs(aoi) < small_angle, 1.0, iam)
# angles at 90 degrees can produce tiny negative values,
# which should be zero. this is a result of calculation precision
# rather than the physical model
iam = np.where(iam < 0, 0, iam)
# for light coming from behind the plane, none can enter the module
iam = np.where(aoi > 90, 0, iam)
if isinstance(aoi_input, pd.Series):
iam = pd.Series(iam, index=aoi_input.index)
return iam | ['def', 'physicaliam', '(', 'aoi', ',', 'n', '=', '1.526', ',', 'K', '=', '4.', ',', 'L', '=', '0.002', ')', ':', 'zeroang', '=', '1e-06', "# hold a new reference to the input aoi object since we're going to", "# overwrite the aoi reference below, but we'll need it for the", '# series check at the end of the function', 'aoi_input', '=', 'aoi', 'aoi', '=', 'np', '.', 'where', '(', 'aoi', '==', '0', ',', 'zeroang', ',', 'aoi', ')', '# angle of reflection', 'thetar_deg', '=', 'tools', '.', 'asind', '(', '1.0', '/', 'n', '*', '(', 'tools', '.', 'sind', '(', 'aoi', ')', ')', ')', '# reflectance and transmittance for normal incidence light', 'rho_zero', '=', '(', '(', '1', '-', 'n', ')', '/', '(', '1', '+', 'n', ')', ')', '**', '2', 'tau_zero', '=', 'np', '.', 'exp', '(', '-', 'K', '*', 'L', ')', '# reflectance for parallel and perpendicular polarized light', 'rho_para', '=', '(', 'tools', '.', 'tand', '(', 'thetar_deg', '-', 'aoi', ')', '/', 'tools', '.', 'tand', '(', 'thetar_deg', '+', 'aoi', ')', ')', '**', '2', 'rho_perp', '=', '(', 'tools', '.', 'sind', '(', 'thetar_deg', '-', 'aoi', ')', '/', 'tools', '.', 'sind', '(', 'thetar_deg', '+', 'aoi', ')', ')', '**', '2', '# transmittance for non-normal light', 'tau', '=', 'np', '.', 'exp', '(', '-', 'K', '*', 'L', '/', 'tools', '.', 'cosd', '(', 'thetar_deg', ')', ')', '# iam is ratio of non-normal to normal incidence transmitted light', '# after deducting the reflected portion of each', 'iam', '=', '(', '(', '1', '-', '(', 'rho_para', '+', 'rho_perp', ')', '/', '2', ')', '/', '(', '1', '-', 'rho_zero', ')', '*', 'tau', '/', 'tau_zero', ')', 'with', 'np', '.', 'errstate', '(', 'invalid', '=', "'ignore'", ')', ':', '# angles near zero produce nan, but iam is defined as one', 'small_angle', '=', '1e-06', 'iam', '=', 'np', '.', 'where', '(', 'np', '.', 'abs', '(', 'aoi', ')', '<', 'small_angle', ',', '1.0', ',', 'iam', ')', '# angles at 90 degrees can produce tiny negative values,', '# which should be zero. this is a result of calculation precision', '# rather than the physical model', 'iam', '=', 'np', '.', 'where', '(', 'iam', '<', '0', ',', '0', ',', 'iam', ')', '# for light coming from behind the plane, none can enter the module', 'iam', '=', 'np', '.', 'where', '(', 'aoi', '>', '90', ',', '0', ',', 'iam', ')', 'if', 'isinstance', '(', 'aoi_input', ',', 'pd', '.', 'Series', ')', ':', 'iam', '=', 'pd', '.', 'Series', '(', 'iam', ',', 'index', '=', 'aoi_input', '.', 'index', ')', 'return', 'iam'] | Determine the incidence angle modifier using refractive index,
extinction coefficient, and glazing thickness.
physicaliam calculates the incidence angle modifier as described in
De Soto et al. "Improvement and validation of a model for
photovoltaic array performance", section 3. The calculation is based
on a physical model of absorbtion and transmission through a
cover.
Note: The authors of this function believe that eqn. 14 in [1] is
incorrect. This function uses the following equation in its place:
theta_r = arcsin(1/n * sin(aoi))
Parameters
----------
aoi : numeric
The angle of incidence between the module normal vector and the
sun-beam vector in degrees. Angles of 0 are replaced with 1e-06
to ensure non-nan results. Angles of nan will result in nan.
n : numeric, default 1.526
The effective index of refraction (unitless). Reference [1]
indicates that a value of 1.526 is acceptable for glass. n must
be a numeric scalar or vector with all values >=0. If n is a
vector, it must be the same size as all other input vectors.
K : numeric, default 4.0
The glazing extinction coefficient in units of 1/meters.
Reference [1] indicates that a value of 4 is reasonable for
"water white" glass. K must be a numeric scalar or vector with
all values >=0. If K is a vector, it must be the same size as
all other input vectors.
L : numeric, default 0.002
The glazing thickness in units of meters. Reference [1]
indicates that 0.002 meters (2 mm) is reasonable for most
glass-covered PV panels. L must be a numeric scalar or vector
with all values >=0. If L is a vector, it must be the same size
as all other input vectors.
Returns
-------
iam : numeric
The incident angle modifier
References
----------
[1] W. De Soto et al., "Improvement and validation of a model for
photovoltaic array performance", Solar Energy, vol 80, pp. 78-88,
2006.
[2] Duffie, John A. & Beckman, William A.. (2006). Solar Engineering
of Thermal Processes, third edition. [Books24x7 version] Available
from http://common.books24x7.com/toc.aspx?bookid=17160.
See Also
--------
getaoi
ephemeris
spa
ashraeiam | ['Determine', 'the', 'incidence', 'angle', 'modifier', 'using', 'refractive', 'index', 'extinction', 'coefficient', 'and', 'glazing', 'thickness', '.'] | train | https://github.com/pvlib/pvlib-python/blob/2e844a595b820b43d1170269781fa66bd0ccc8a3/pvlib/pvsystem.py#L955-L1064 |
1,702 | Cue/scales | src/greplin/scales/__init__.py | _Stats.getStat | def getStat(cls, obj, name):
"""Gets the stat for the given object with the given name, or None if no such stat exists."""
objClass = type(obj)
for theClass in objClass.__mro__:
if theClass == object:
break
for value in theClass.__dict__.values():
if isinstance(value, Stat) and value.getName() == name:
return value | python | def getStat(cls, obj, name):
"""Gets the stat for the given object with the given name, or None if no such stat exists."""
objClass = type(obj)
for theClass in objClass.__mro__:
if theClass == object:
break
for value in theClass.__dict__.values():
if isinstance(value, Stat) and value.getName() == name:
return value | ['def', 'getStat', '(', 'cls', ',', 'obj', ',', 'name', ')', ':', 'objClass', '=', 'type', '(', 'obj', ')', 'for', 'theClass', 'in', 'objClass', '.', '__mro__', ':', 'if', 'theClass', '==', 'object', ':', 'break', 'for', 'value', 'in', 'theClass', '.', '__dict__', '.', 'values', '(', ')', ':', 'if', 'isinstance', '(', 'value', ',', 'Stat', ')', 'and', 'value', '.', 'getName', '(', ')', '==', 'name', ':', 'return', 'value'] | Gets the stat for the given object with the given name, or None if no such stat exists. | ['Gets', 'the', 'stat', 'for', 'the', 'given', 'object', 'with', 'the', 'given', 'name', 'or', 'None', 'if', 'no', 'such', 'stat', 'exists', '.'] | train | https://github.com/Cue/scales/blob/0aced26eb050ceb98ee9d5d6cdca8db448666986/src/greplin/scales/__init__.py#L193-L201 |
1,703 | ipinfo/python | ipinfo/handler.py | Handler._requestDetails | def _requestDetails(self, ip_address=None):
"""Get IP address data by sending request to IPinfo API."""
if ip_address not in self.cache:
url = self.API_URL
if ip_address:
url += '/' + ip_address
response = requests.get(url, headers=self._get_headers(), **self.request_options)
if response.status_code == 429:
raise RequestQuotaExceededError()
response.raise_for_status()
self.cache[ip_address] = response.json()
return self.cache[ip_address] | python | def _requestDetails(self, ip_address=None):
"""Get IP address data by sending request to IPinfo API."""
if ip_address not in self.cache:
url = self.API_URL
if ip_address:
url += '/' + ip_address
response = requests.get(url, headers=self._get_headers(), **self.request_options)
if response.status_code == 429:
raise RequestQuotaExceededError()
response.raise_for_status()
self.cache[ip_address] = response.json()
return self.cache[ip_address] | ['def', '_requestDetails', '(', 'self', ',', 'ip_address', '=', 'None', ')', ':', 'if', 'ip_address', 'not', 'in', 'self', '.', 'cache', ':', 'url', '=', 'self', '.', 'API_URL', 'if', 'ip_address', ':', 'url', '+=', "'/'", '+', 'ip_address', 'response', '=', 'requests', '.', 'get', '(', 'url', ',', 'headers', '=', 'self', '.', '_get_headers', '(', ')', ',', '*', '*', 'self', '.', 'request_options', ')', 'if', 'response', '.', 'status_code', '==', '429', ':', 'raise', 'RequestQuotaExceededError', '(', ')', 'response', '.', 'raise_for_status', '(', ')', 'self', '.', 'cache', '[', 'ip_address', ']', '=', 'response', '.', 'json', '(', ')', 'return', 'self', '.', 'cache', '[', 'ip_address', ']'] | Get IP address data by sending request to IPinfo API. | ['Get', 'IP', 'address', 'data', 'by', 'sending', 'request', 'to', 'IPinfo', 'API', '.'] | train | https://github.com/ipinfo/python/blob/62fef9136069eab280806cc772dc578d3f1d8d63/ipinfo/handler.py#L52-L65 |
1,704 | rigetti/pyquil | pyquil/api/_base_connection.py | parse_error | def parse_error(res):
"""
Every server error should contain a "status" field with a human readable explanation of
what went wrong as well as a "error_type" field indicating the kind of error that can be mapped
to a Python type.
There's a fallback error UnknownError for other types of exceptions (network issues, api
gateway problems, etc.)
"""
try:
body = res.json()
except JSONDecodeError:
raise UnknownApiError(res.text)
if 'error_type' not in body:
raise UnknownApiError(str(body))
error_type = body['error_type']
status = body['status']
if re.search(r"[0-9]+ qubits were requested, but the QVM is limited to [0-9]+ qubits.", status):
return TooManyQubitsError(status)
error_cls = error_mapping.get(error_type, UnknownApiError)
return error_cls(status) | python | def parse_error(res):
"""
Every server error should contain a "status" field with a human readable explanation of
what went wrong as well as a "error_type" field indicating the kind of error that can be mapped
to a Python type.
There's a fallback error UnknownError for other types of exceptions (network issues, api
gateway problems, etc.)
"""
try:
body = res.json()
except JSONDecodeError:
raise UnknownApiError(res.text)
if 'error_type' not in body:
raise UnknownApiError(str(body))
error_type = body['error_type']
status = body['status']
if re.search(r"[0-9]+ qubits were requested, but the QVM is limited to [0-9]+ qubits.", status):
return TooManyQubitsError(status)
error_cls = error_mapping.get(error_type, UnknownApiError)
return error_cls(status) | ['def', 'parse_error', '(', 'res', ')', ':', 'try', ':', 'body', '=', 'res', '.', 'json', '(', ')', 'except', 'JSONDecodeError', ':', 'raise', 'UnknownApiError', '(', 'res', '.', 'text', ')', 'if', "'error_type'", 'not', 'in', 'body', ':', 'raise', 'UnknownApiError', '(', 'str', '(', 'body', ')', ')', 'error_type', '=', 'body', '[', "'error_type'", ']', 'status', '=', 'body', '[', "'status'", ']', 'if', 're', '.', 'search', '(', 'r"[0-9]+ qubits were requested, but the QVM is limited to [0-9]+ qubits."', ',', 'status', ')', ':', 'return', 'TooManyQubitsError', '(', 'status', ')', 'error_cls', '=', 'error_mapping', '.', 'get', '(', 'error_type', ',', 'UnknownApiError', ')', 'return', 'error_cls', '(', 'status', ')'] | Every server error should contain a "status" field with a human readable explanation of
what went wrong as well as a "error_type" field indicating the kind of error that can be mapped
to a Python type.
There's a fallback error UnknownError for other types of exceptions (network issues, api
gateway problems, etc.) | ['Every', 'server', 'error', 'should', 'contain', 'a', 'status', 'field', 'with', 'a', 'human', 'readable', 'explanation', 'of', 'what', 'went', 'wrong', 'as', 'well', 'as', 'a', 'error_type', 'field', 'indicating', 'the', 'kind', 'of', 'error', 'that', 'can', 'be', 'mapped', 'to', 'a', 'Python', 'type', '.'] | train | https://github.com/rigetti/pyquil/blob/ec98e453084b0037d69d8c3245f6822a5422593d/pyquil/api/_base_connection.py#L62-L86 |
1,705 | orbingol/NURBS-Python | geomdl/linalg.py | binomial_coefficient | def binomial_coefficient(k, i):
""" Computes the binomial coefficient (denoted by *k choose i*).
Please see the following website for details: http://mathworld.wolfram.com/BinomialCoefficient.html
:param k: size of the set of distinct elements
:type k: int
:param i: size of the subsets
:type i: int
:return: combination of *k* and *i*
:rtype: float
"""
# Special case
if i > k:
return float(0)
# Compute binomial coefficient
k_fact = math.factorial(k)
i_fact = math.factorial(i)
k_i_fact = math.factorial(k - i)
return float(k_fact / (k_i_fact * i_fact)) | python | def binomial_coefficient(k, i):
""" Computes the binomial coefficient (denoted by *k choose i*).
Please see the following website for details: http://mathworld.wolfram.com/BinomialCoefficient.html
:param k: size of the set of distinct elements
:type k: int
:param i: size of the subsets
:type i: int
:return: combination of *k* and *i*
:rtype: float
"""
# Special case
if i > k:
return float(0)
# Compute binomial coefficient
k_fact = math.factorial(k)
i_fact = math.factorial(i)
k_i_fact = math.factorial(k - i)
return float(k_fact / (k_i_fact * i_fact)) | ['def', 'binomial_coefficient', '(', 'k', ',', 'i', ')', ':', '# Special case', 'if', 'i', '>', 'k', ':', 'return', 'float', '(', '0', ')', '# Compute binomial coefficient', 'k_fact', '=', 'math', '.', 'factorial', '(', 'k', ')', 'i_fact', '=', 'math', '.', 'factorial', '(', 'i', ')', 'k_i_fact', '=', 'math', '.', 'factorial', '(', 'k', '-', 'i', ')', 'return', 'float', '(', 'k_fact', '/', '(', 'k_i_fact', '*', 'i_fact', ')', ')'] | Computes the binomial coefficient (denoted by *k choose i*).
Please see the following website for details: http://mathworld.wolfram.com/BinomialCoefficient.html
:param k: size of the set of distinct elements
:type k: int
:param i: size of the subsets
:type i: int
:return: combination of *k* and *i*
:rtype: float | ['Computes', 'the', 'binomial', 'coefficient', '(', 'denoted', 'by', '*', 'k', 'choose', 'i', '*', ')', '.'] | train | https://github.com/orbingol/NURBS-Python/blob/b1c6a8b51cf143ff58761438e93ba6baef470627/geomdl/linalg.py#L419-L438 |
1,706 | cloudendpoints/endpoints-management-python | endpoints_management/control/timestamp.py | from_rfc3339 | def from_rfc3339(rfc3339_text, with_nanos=False):
"""Parse a RFC 3339 date string format to datetime.date.
Example of accepted format: '1972-01-01T10:00:20.021-05:00'
- By default, the result is a datetime.datetime
- If with_nanos is true, the result is a 2-tuple, (datetime.datetime,
nanos), where the second field represents the possible nanosecond
resolution component of the second field.
Args:
rfc3339_text (string): An rfc3339 formatted date string
with_nanos (bool): Determines if nanoseconds should be parsed from the
string
Raises:
ValueError: if ``rfc3339_text`` is invalid
Returns:
:class:`datetime.datetime`: when with_nanos is False
tuple(:class:`datetime.datetime`, int): when with_nanos is True
"""
timestamp = strict_rfc3339.rfc3339_to_timestamp(rfc3339_text)
result = datetime.datetime.utcfromtimestamp(timestamp)
if with_nanos:
return (result, int((timestamp - int(timestamp)) * 1e9))
else:
return result | python | def from_rfc3339(rfc3339_text, with_nanos=False):
"""Parse a RFC 3339 date string format to datetime.date.
Example of accepted format: '1972-01-01T10:00:20.021-05:00'
- By default, the result is a datetime.datetime
- If with_nanos is true, the result is a 2-tuple, (datetime.datetime,
nanos), where the second field represents the possible nanosecond
resolution component of the second field.
Args:
rfc3339_text (string): An rfc3339 formatted date string
with_nanos (bool): Determines if nanoseconds should be parsed from the
string
Raises:
ValueError: if ``rfc3339_text`` is invalid
Returns:
:class:`datetime.datetime`: when with_nanos is False
tuple(:class:`datetime.datetime`, int): when with_nanos is True
"""
timestamp = strict_rfc3339.rfc3339_to_timestamp(rfc3339_text)
result = datetime.datetime.utcfromtimestamp(timestamp)
if with_nanos:
return (result, int((timestamp - int(timestamp)) * 1e9))
else:
return result | ['def', 'from_rfc3339', '(', 'rfc3339_text', ',', 'with_nanos', '=', 'False', ')', ':', 'timestamp', '=', 'strict_rfc3339', '.', 'rfc3339_to_timestamp', '(', 'rfc3339_text', ')', 'result', '=', 'datetime', '.', 'datetime', '.', 'utcfromtimestamp', '(', 'timestamp', ')', 'if', 'with_nanos', ':', 'return', '(', 'result', ',', 'int', '(', '(', 'timestamp', '-', 'int', '(', 'timestamp', ')', ')', '*', '1e9', ')', ')', 'else', ':', 'return', 'result'] | Parse a RFC 3339 date string format to datetime.date.
Example of accepted format: '1972-01-01T10:00:20.021-05:00'
- By default, the result is a datetime.datetime
- If with_nanos is true, the result is a 2-tuple, (datetime.datetime,
nanos), where the second field represents the possible nanosecond
resolution component of the second field.
Args:
rfc3339_text (string): An rfc3339 formatted date string
with_nanos (bool): Determines if nanoseconds should be parsed from the
string
Raises:
ValueError: if ``rfc3339_text`` is invalid
Returns:
:class:`datetime.datetime`: when with_nanos is False
tuple(:class:`datetime.datetime`, int): when with_nanos is True | ['Parse', 'a', 'RFC', '3339', 'date', 'string', 'format', 'to', 'datetime', '.', 'date', '.'] | train | https://github.com/cloudendpoints/endpoints-management-python/blob/ec3c4a330ae9d65738861ce6df4dd6c3cb9f7731/endpoints_management/control/timestamp.py#L105-L133 |
1,707 | log2timeline/plaso | plaso/storage/interface.py | StorageFileWriter.ReadPreprocessingInformation | def ReadPreprocessingInformation(self, knowledge_base):
"""Reads preprocessing information.
The preprocessing information contains the system configuration which
contains information about various system specific configuration data,
for example the user accounts.
Args:
knowledge_base (KnowledgeBase): is used to store the preprocessing
information.
Raises:
IOError: when the storage writer is closed.
OSError: when the storage writer is closed.
"""
if not self._storage_file:
raise IOError('Unable to read from closed storage writer.')
self._storage_file.ReadPreprocessingInformation(knowledge_base) | python | def ReadPreprocessingInformation(self, knowledge_base):
"""Reads preprocessing information.
The preprocessing information contains the system configuration which
contains information about various system specific configuration data,
for example the user accounts.
Args:
knowledge_base (KnowledgeBase): is used to store the preprocessing
information.
Raises:
IOError: when the storage writer is closed.
OSError: when the storage writer is closed.
"""
if not self._storage_file:
raise IOError('Unable to read from closed storage writer.')
self._storage_file.ReadPreprocessingInformation(knowledge_base) | ['def', 'ReadPreprocessingInformation', '(', 'self', ',', 'knowledge_base', ')', ':', 'if', 'not', 'self', '.', '_storage_file', ':', 'raise', 'IOError', '(', "'Unable to read from closed storage writer.'", ')', 'self', '.', '_storage_file', '.', 'ReadPreprocessingInformation', '(', 'knowledge_base', ')'] | Reads preprocessing information.
The preprocessing information contains the system configuration which
contains information about various system specific configuration data,
for example the user accounts.
Args:
knowledge_base (KnowledgeBase): is used to store the preprocessing
information.
Raises:
IOError: when the storage writer is closed.
OSError: when the storage writer is closed. | ['Reads', 'preprocessing', 'information', '.'] | train | https://github.com/log2timeline/plaso/blob/9c564698d2da3ffbe23607a3c54c0582ea18a6cc/plaso/storage/interface.py#L1683-L1701 |
1,708 | materialsproject/pymatgen | pymatgen/io/vasp/outputs.py | Wavecar.get_parchg | def get_parchg(self, poscar, kpoint, band, spin=None, phase=False,
scale=2):
"""
Generates a Chgcar object, which is the charge density of the specified
wavefunction.
This function generates a Chgcar object with the charge density of the
wavefunction specified by band and kpoint (and spin, if the WAVECAR
corresponds to a spin-polarized calculation). The phase tag is a
feature that is not present in VASP. For a real wavefunction, the phase
tag being turned on means that the charge density is multiplied by the
sign of the wavefunction at that point in space. A warning is generated
if the phase tag is on and the chosen kpoint is not Gamma.
Note: Augmentation from the PAWs is NOT included in this function. The
maximal charge density will differ from the PARCHG from VASP, but the
qualitative shape of the charge density will match.
Args:
poscar (pymatgen.io.vasp.inputs.Poscar): Poscar object that has the
structure associated with the WAVECAR file
kpoint (int): the index of the kpoint for the wavefunction
band (int): the index of the band for the wavefunction
spin (int): optional argument to specify the spin. If the
Wavecar has ISPIN = 2, spin == None generates a
Chgcar with total spin and magnetization, and
spin == {0, 1} specifies just the spin up or
down component.
phase (bool): flag to determine if the charge density is
multiplied by the sign of the wavefunction.
Only valid for real wavefunctions.
scale (int): scaling for the FFT grid. The default value of 2 is
at least as fine as the VASP default.
Returns:
a pymatgen.io.vasp.outputs.Chgcar object
"""
if phase and not np.all(self.kpoints[kpoint] == 0.):
warnings.warn('phase == True should only be used for the Gamma '
'kpoint! I hope you know what you\'re doing!')
# scaling of ng for the fft grid, need to restore value at the end
temp_ng = self.ng
self.ng = self.ng * scale
N = np.prod(self.ng)
data = {}
if self.spin == 2:
if spin is not None:
wfr = np.fft.ifftn(self.fft_mesh(kpoint, band, spin=spin)) * N
den = np.abs(np.conj(wfr) * wfr)
if phase:
den = np.sign(np.real(wfr)) * den
data['total'] = den
else:
wfr = np.fft.ifftn(self.fft_mesh(kpoint, band, spin=0)) * N
denup = np.abs(np.conj(wfr) * wfr)
wfr = np.fft.ifftn(self.fft_mesh(kpoint, band, spin=1)) * N
dendn = np.abs(np.conj(wfr) * wfr)
data['total'] = denup + dendn
data['diff'] = denup - dendn
else:
wfr = np.fft.ifftn(self.fft_mesh(kpoint, band)) * N
den = np.abs(np.conj(wfr) * wfr)
if phase:
den = np.sign(np.real(wfr)) * den
data['total'] = den
self.ng = temp_ng
return Chgcar(poscar, data) | python | def get_parchg(self, poscar, kpoint, band, spin=None, phase=False,
scale=2):
"""
Generates a Chgcar object, which is the charge density of the specified
wavefunction.
This function generates a Chgcar object with the charge density of the
wavefunction specified by band and kpoint (and spin, if the WAVECAR
corresponds to a spin-polarized calculation). The phase tag is a
feature that is not present in VASP. For a real wavefunction, the phase
tag being turned on means that the charge density is multiplied by the
sign of the wavefunction at that point in space. A warning is generated
if the phase tag is on and the chosen kpoint is not Gamma.
Note: Augmentation from the PAWs is NOT included in this function. The
maximal charge density will differ from the PARCHG from VASP, but the
qualitative shape of the charge density will match.
Args:
poscar (pymatgen.io.vasp.inputs.Poscar): Poscar object that has the
structure associated with the WAVECAR file
kpoint (int): the index of the kpoint for the wavefunction
band (int): the index of the band for the wavefunction
spin (int): optional argument to specify the spin. If the
Wavecar has ISPIN = 2, spin == None generates a
Chgcar with total spin and magnetization, and
spin == {0, 1} specifies just the spin up or
down component.
phase (bool): flag to determine if the charge density is
multiplied by the sign of the wavefunction.
Only valid for real wavefunctions.
scale (int): scaling for the FFT grid. The default value of 2 is
at least as fine as the VASP default.
Returns:
a pymatgen.io.vasp.outputs.Chgcar object
"""
if phase and not np.all(self.kpoints[kpoint] == 0.):
warnings.warn('phase == True should only be used for the Gamma '
'kpoint! I hope you know what you\'re doing!')
# scaling of ng for the fft grid, need to restore value at the end
temp_ng = self.ng
self.ng = self.ng * scale
N = np.prod(self.ng)
data = {}
if self.spin == 2:
if spin is not None:
wfr = np.fft.ifftn(self.fft_mesh(kpoint, band, spin=spin)) * N
den = np.abs(np.conj(wfr) * wfr)
if phase:
den = np.sign(np.real(wfr)) * den
data['total'] = den
else:
wfr = np.fft.ifftn(self.fft_mesh(kpoint, band, spin=0)) * N
denup = np.abs(np.conj(wfr) * wfr)
wfr = np.fft.ifftn(self.fft_mesh(kpoint, band, spin=1)) * N
dendn = np.abs(np.conj(wfr) * wfr)
data['total'] = denup + dendn
data['diff'] = denup - dendn
else:
wfr = np.fft.ifftn(self.fft_mesh(kpoint, band)) * N
den = np.abs(np.conj(wfr) * wfr)
if phase:
den = np.sign(np.real(wfr)) * den
data['total'] = den
self.ng = temp_ng
return Chgcar(poscar, data) | ['def', 'get_parchg', '(', 'self', ',', 'poscar', ',', 'kpoint', ',', 'band', ',', 'spin', '=', 'None', ',', 'phase', '=', 'False', ',', 'scale', '=', '2', ')', ':', 'if', 'phase', 'and', 'not', 'np', '.', 'all', '(', 'self', '.', 'kpoints', '[', 'kpoint', ']', '==', '0.', ')', ':', 'warnings', '.', 'warn', '(', "'phase == True should only be used for the Gamma '", "'kpoint! I hope you know what you\\'re doing!'", ')', '# scaling of ng for the fft grid, need to restore value at the end', 'temp_ng', '=', 'self', '.', 'ng', 'self', '.', 'ng', '=', 'self', '.', 'ng', '*', 'scale', 'N', '=', 'np', '.', 'prod', '(', 'self', '.', 'ng', ')', 'data', '=', '{', '}', 'if', 'self', '.', 'spin', '==', '2', ':', 'if', 'spin', 'is', 'not', 'None', ':', 'wfr', '=', 'np', '.', 'fft', '.', 'ifftn', '(', 'self', '.', 'fft_mesh', '(', 'kpoint', ',', 'band', ',', 'spin', '=', 'spin', ')', ')', '*', 'N', 'den', '=', 'np', '.', 'abs', '(', 'np', '.', 'conj', '(', 'wfr', ')', '*', 'wfr', ')', 'if', 'phase', ':', 'den', '=', 'np', '.', 'sign', '(', 'np', '.', 'real', '(', 'wfr', ')', ')', '*', 'den', 'data', '[', "'total'", ']', '=', 'den', 'else', ':', 'wfr', '=', 'np', '.', 'fft', '.', 'ifftn', '(', 'self', '.', 'fft_mesh', '(', 'kpoint', ',', 'band', ',', 'spin', '=', '0', ')', ')', '*', 'N', 'denup', '=', 'np', '.', 'abs', '(', 'np', '.', 'conj', '(', 'wfr', ')', '*', 'wfr', ')', 'wfr', '=', 'np', '.', 'fft', '.', 'ifftn', '(', 'self', '.', 'fft_mesh', '(', 'kpoint', ',', 'band', ',', 'spin', '=', '1', ')', ')', '*', 'N', 'dendn', '=', 'np', '.', 'abs', '(', 'np', '.', 'conj', '(', 'wfr', ')', '*', 'wfr', ')', 'data', '[', "'total'", ']', '=', 'denup', '+', 'dendn', 'data', '[', "'diff'", ']', '=', 'denup', '-', 'dendn', 'else', ':', 'wfr', '=', 'np', '.', 'fft', '.', 'ifftn', '(', 'self', '.', 'fft_mesh', '(', 'kpoint', ',', 'band', ')', ')', '*', 'N', 'den', '=', 'np', '.', 'abs', '(', 'np', '.', 'conj', '(', 'wfr', ')', '*', 'wfr', ')', 'if', 'phase', ':', 'den', '=', 'np', '.', 'sign', '(', 'np', '.', 'real', '(', 'wfr', ')', ')', '*', 'den', 'data', '[', "'total'", ']', '=', 'den', 'self', '.', 'ng', '=', 'temp_ng', 'return', 'Chgcar', '(', 'poscar', ',', 'data', ')'] | Generates a Chgcar object, which is the charge density of the specified
wavefunction.
This function generates a Chgcar object with the charge density of the
wavefunction specified by band and kpoint (and spin, if the WAVECAR
corresponds to a spin-polarized calculation). The phase tag is a
feature that is not present in VASP. For a real wavefunction, the phase
tag being turned on means that the charge density is multiplied by the
sign of the wavefunction at that point in space. A warning is generated
if the phase tag is on and the chosen kpoint is not Gamma.
Note: Augmentation from the PAWs is NOT included in this function. The
maximal charge density will differ from the PARCHG from VASP, but the
qualitative shape of the charge density will match.
Args:
poscar (pymatgen.io.vasp.inputs.Poscar): Poscar object that has the
structure associated with the WAVECAR file
kpoint (int): the index of the kpoint for the wavefunction
band (int): the index of the band for the wavefunction
spin (int): optional argument to specify the spin. If the
Wavecar has ISPIN = 2, spin == None generates a
Chgcar with total spin and magnetization, and
spin == {0, 1} specifies just the spin up or
down component.
phase (bool): flag to determine if the charge density is
multiplied by the sign of the wavefunction.
Only valid for real wavefunctions.
scale (int): scaling for the FFT grid. The default value of 2 is
at least as fine as the VASP default.
Returns:
a pymatgen.io.vasp.outputs.Chgcar object | ['Generates', 'a', 'Chgcar', 'object', 'which', 'is', 'the', 'charge', 'density', 'of', 'the', 'specified', 'wavefunction', '.'] | train | https://github.com/materialsproject/pymatgen/blob/4ca558cf72f8d5f8a1f21dfdfc0181a971c186da/pymatgen/io/vasp/outputs.py#L4238-L4307 |
1,709 | CodersOfTheNight/oshino | oshino/agents/__init__.py | Agent.ready | def ready(self):
"""
Function used when agent is `lazy`.
It is being processed only when `ready` condition is satisfied
"""
logger = self.get_logger()
now = current_ts()
logger.trace("Current time: {0}".format(now))
logger.trace("Last Run: {0}".format(self._last_run))
delta = (now - self._last_run)
logger.trace("Delta: {0}, Interval: {1}"
.format(delta, self.interval * 1000))
return delta > self.interval * 1000 | python | def ready(self):
"""
Function used when agent is `lazy`.
It is being processed only when `ready` condition is satisfied
"""
logger = self.get_logger()
now = current_ts()
logger.trace("Current time: {0}".format(now))
logger.trace("Last Run: {0}".format(self._last_run))
delta = (now - self._last_run)
logger.trace("Delta: {0}, Interval: {1}"
.format(delta, self.interval * 1000))
return delta > self.interval * 1000 | ['def', 'ready', '(', 'self', ')', ':', 'logger', '=', 'self', '.', 'get_logger', '(', ')', 'now', '=', 'current_ts', '(', ')', 'logger', '.', 'trace', '(', '"Current time: {0}"', '.', 'format', '(', 'now', ')', ')', 'logger', '.', 'trace', '(', '"Last Run: {0}"', '.', 'format', '(', 'self', '.', '_last_run', ')', ')', 'delta', '=', '(', 'now', '-', 'self', '.', '_last_run', ')', 'logger', '.', 'trace', '(', '"Delta: {0}, Interval: {1}"', '.', 'format', '(', 'delta', ',', 'self', '.', 'interval', '*', '1000', ')', ')', 'return', 'delta', '>', 'self', '.', 'interval', '*', '1000'] | Function used when agent is `lazy`.
It is being processed only when `ready` condition is satisfied | ['Function', 'used', 'when', 'agent', 'is', 'lazy', '.', 'It', 'is', 'being', 'processed', 'only', 'when', 'ready', 'condition', 'is', 'satisfied'] | train | https://github.com/CodersOfTheNight/oshino/blob/00f7e151e3ce1f3a7f43b353b695c4dba83c7f28/oshino/agents/__init__.py#L66-L78 |
1,710 | gvanderheide/discreteMarkovChain | discreteMarkovChain/markovChain.py | markovChain.setStateCodes | def setStateCodes(self):
"""
Generates (sorted) codes for the states in the statespace
This is used to quickly identify which states occur after a transition/action
"""
#calculate the statespace and determine the minima and maxima each element in the state vector
statespace = self.statespace()
self.minvalues = np.amin(statespace,axis=0)
self.maxvalues = np.amax(statespace,axis=0)
#calculate the largest number of values and create a state code
statesize = statespace.shape[1]
largestRange = 1+np.max(self.maxvalues-self.minvalues)
self.statecode = np.power(largestRange, np.arange(statesize),dtype=int)
#Calculate the codes, sort them, and store them in self.codes
codes = self.getStateCode(statespace)
sorted_indices = np.argsort(codes)
self.codes = codes[sorted_indices]
if np.unique(self.codes).shape != self.codes.shape:
raise "Non-unique coding of states, results are unreliable"
#For the end results, it is useful to put the indices and corresponding states in a dictionary
mapping = OrderedDict()
for index,state in enumerate(statespace[sorted_indices]):
mapping[index] = state
self.mapping = mapping | python | def setStateCodes(self):
"""
Generates (sorted) codes for the states in the statespace
This is used to quickly identify which states occur after a transition/action
"""
#calculate the statespace and determine the minima and maxima each element in the state vector
statespace = self.statespace()
self.minvalues = np.amin(statespace,axis=0)
self.maxvalues = np.amax(statespace,axis=0)
#calculate the largest number of values and create a state code
statesize = statespace.shape[1]
largestRange = 1+np.max(self.maxvalues-self.minvalues)
self.statecode = np.power(largestRange, np.arange(statesize),dtype=int)
#Calculate the codes, sort them, and store them in self.codes
codes = self.getStateCode(statespace)
sorted_indices = np.argsort(codes)
self.codes = codes[sorted_indices]
if np.unique(self.codes).shape != self.codes.shape:
raise "Non-unique coding of states, results are unreliable"
#For the end results, it is useful to put the indices and corresponding states in a dictionary
mapping = OrderedDict()
for index,state in enumerate(statespace[sorted_indices]):
mapping[index] = state
self.mapping = mapping | ['def', 'setStateCodes', '(', 'self', ')', ':', '#calculate the statespace and determine the minima and maxima each element in the state vector ', 'statespace', '=', 'self', '.', 'statespace', '(', ')', 'self', '.', 'minvalues', '=', 'np', '.', 'amin', '(', 'statespace', ',', 'axis', '=', '0', ')', 'self', '.', 'maxvalues', '=', 'np', '.', 'amax', '(', 'statespace', ',', 'axis', '=', '0', ')', '#calculate the largest number of values and create a state code ', 'statesize', '=', 'statespace', '.', 'shape', '[', '1', ']', 'largestRange', '=', '1', '+', 'np', '.', 'max', '(', 'self', '.', 'maxvalues', '-', 'self', '.', 'minvalues', ')', 'self', '.', 'statecode', '=', 'np', '.', 'power', '(', 'largestRange', ',', 'np', '.', 'arange', '(', 'statesize', ')', ',', 'dtype', '=', 'int', ')', '#Calculate the codes, sort them, and store them in self.codes', 'codes', '=', 'self', '.', 'getStateCode', '(', 'statespace', ')', 'sorted_indices', '=', 'np', '.', 'argsort', '(', 'codes', ')', 'self', '.', 'codes', '=', 'codes', '[', 'sorted_indices', ']', 'if', 'np', '.', 'unique', '(', 'self', '.', 'codes', ')', '.', 'shape', '!=', 'self', '.', 'codes', '.', 'shape', ':', 'raise', '"Non-unique coding of states, results are unreliable"', '#For the end results, it is useful to put the indices and corresponding states in a dictionary ', 'mapping', '=', 'OrderedDict', '(', ')', 'for', 'index', ',', 'state', 'in', 'enumerate', '(', 'statespace', '[', 'sorted_indices', ']', ')', ':', 'mapping', '[', 'index', ']', '=', 'state', 'self', '.', 'mapping', '=', 'mapping'] | Generates (sorted) codes for the states in the statespace
This is used to quickly identify which states occur after a transition/action | ['Generates', '(', 'sorted', ')', 'codes', 'for', 'the', 'states', 'in', 'the', 'statespace', 'This', 'is', 'used', 'to', 'quickly', 'identify', 'which', 'states', 'occur', 'after', 'a', 'transition', '/', 'action'] | train | https://github.com/gvanderheide/discreteMarkovChain/blob/8325ffdb791c109eee600684ee0dc9126ce80700/discreteMarkovChain/markovChain.py#L254-L282 |
1,711 | FNNDSC/pfurl | pfurl/pfurl.py | Pfurl.storage_resolveBasedOnKey | def storage_resolveBasedOnKey(self, *args, **kwargs):
"""
Call the remote service and ask for the storage location based on the key.
:param args:
:param kwargs:
:return:
"""
global Gd_internalvar
d_msg = {
'action': 'internalctl',
'meta': {
'var': 'key2address',
'compute': '<key>'
}
}
str_key = ""
b_status = False
for k,v in kwargs.items():
if k == 'key': str_key = v
d_msg['meta']['key'] = str_key
#
d_ret = self.pullPath_core(d_msg = d_msg)
return {
'status': b_status,
'path': str_internalLocation
} | python | def storage_resolveBasedOnKey(self, *args, **kwargs):
"""
Call the remote service and ask for the storage location based on the key.
:param args:
:param kwargs:
:return:
"""
global Gd_internalvar
d_msg = {
'action': 'internalctl',
'meta': {
'var': 'key2address',
'compute': '<key>'
}
}
str_key = ""
b_status = False
for k,v in kwargs.items():
if k == 'key': str_key = v
d_msg['meta']['key'] = str_key
#
d_ret = self.pullPath_core(d_msg = d_msg)
return {
'status': b_status,
'path': str_internalLocation
} | ['def', 'storage_resolveBasedOnKey', '(', 'self', ',', '*', 'args', ',', '*', '*', 'kwargs', ')', ':', 'global', 'Gd_internalvar', 'd_msg', '=', '{', "'action'", ':', "'internalctl'", ',', "'meta'", ':', '{', "'var'", ':', "'key2address'", ',', "'compute'", ':', "'<key>'", '}', '}', 'str_key', '=', '""', 'b_status', '=', 'False', 'for', 'k', ',', 'v', 'in', 'kwargs', '.', 'items', '(', ')', ':', 'if', 'k', '==', "'key'", ':', 'str_key', '=', 'v', 'd_msg', '[', "'meta'", ']', '[', "'key'", ']', '=', 'str_key', '# ', 'd_ret', '=', 'self', '.', 'pullPath_core', '(', 'd_msg', '=', 'd_msg', ')', 'return', '{', "'status'", ':', 'b_status', ',', "'path'", ':', 'str_internalLocation', '}'] | Call the remote service and ask for the storage location based on the key.
:param args:
:param kwargs:
:return: | ['Call', 'the', 'remote', 'service', 'and', 'ask', 'for', 'the', 'storage', 'location', 'based', 'on', 'the', 'key', '.'] | train | https://github.com/FNNDSC/pfurl/blob/572f634ab582b7b7b7a3fbfd5bf12aadc1ba7958/pfurl/pfurl.py#L190-L221 |
1,712 | nutechsoftware/alarmdecoder | examples/virtual_zone_expander.py | main | def main():
"""
Example application that periodically faults a virtual zone and then
restores it.
This is an advanced feature that allows you to emulate a virtual zone. When
the AlarmDecoder is configured to emulate a zone expander we can fault and
restore those zones programmatically at will. These events can also be seen by
others, such as home automation platforms which allows you to connect other
devices or services and monitor them as you would any physical zone.
For example, you could connect a ZigBee device and receiver and fault or
restore it's zone(s) based on the data received.
In order for this to happen you need to perform a couple configuration steps:
1. Enable zone expander emulation on your AlarmDecoder device by hitting '!'
in a terminal and going through the prompts.
2. Enable the zone expander in your panel programming.
"""
try:
# Retrieve the first USB device
device = AlarmDecoder(SerialDevice(interface=SERIAL_DEVICE))
# Set up an event handlers and open the device
device.on_zone_fault += handle_zone_fault
device.on_zone_restore += handle_zone_restore
with device.open(baudrate=BAUDRATE):
last_update = time.time()
while True:
if time.time() - last_update > WAIT_TIME:
last_update = time.time()
device.fault_zone(TARGET_ZONE)
time.sleep(1)
except Exception as ex:
print('Exception:', ex) | python | def main():
"""
Example application that periodically faults a virtual zone and then
restores it.
This is an advanced feature that allows you to emulate a virtual zone. When
the AlarmDecoder is configured to emulate a zone expander we can fault and
restore those zones programmatically at will. These events can also be seen by
others, such as home automation platforms which allows you to connect other
devices or services and monitor them as you would any physical zone.
For example, you could connect a ZigBee device and receiver and fault or
restore it's zone(s) based on the data received.
In order for this to happen you need to perform a couple configuration steps:
1. Enable zone expander emulation on your AlarmDecoder device by hitting '!'
in a terminal and going through the prompts.
2. Enable the zone expander in your panel programming.
"""
try:
# Retrieve the first USB device
device = AlarmDecoder(SerialDevice(interface=SERIAL_DEVICE))
# Set up an event handlers and open the device
device.on_zone_fault += handle_zone_fault
device.on_zone_restore += handle_zone_restore
with device.open(baudrate=BAUDRATE):
last_update = time.time()
while True:
if time.time() - last_update > WAIT_TIME:
last_update = time.time()
device.fault_zone(TARGET_ZONE)
time.sleep(1)
except Exception as ex:
print('Exception:', ex) | ['def', 'main', '(', ')', ':', 'try', ':', '# Retrieve the first USB device', 'device', '=', 'AlarmDecoder', '(', 'SerialDevice', '(', 'interface', '=', 'SERIAL_DEVICE', ')', ')', '# Set up an event handlers and open the device', 'device', '.', 'on_zone_fault', '+=', 'handle_zone_fault', 'device', '.', 'on_zone_restore', '+=', 'handle_zone_restore', 'with', 'device', '.', 'open', '(', 'baudrate', '=', 'BAUDRATE', ')', ':', 'last_update', '=', 'time', '.', 'time', '(', ')', 'while', 'True', ':', 'if', 'time', '.', 'time', '(', ')', '-', 'last_update', '>', 'WAIT_TIME', ':', 'last_update', '=', 'time', '.', 'time', '(', ')', 'device', '.', 'fault_zone', '(', 'TARGET_ZONE', ')', 'time', '.', 'sleep', '(', '1', ')', 'except', 'Exception', 'as', 'ex', ':', 'print', '(', "'Exception:'", ',', 'ex', ')'] | Example application that periodically faults a virtual zone and then
restores it.
This is an advanced feature that allows you to emulate a virtual zone. When
the AlarmDecoder is configured to emulate a zone expander we can fault and
restore those zones programmatically at will. These events can also be seen by
others, such as home automation platforms which allows you to connect other
devices or services and monitor them as you would any physical zone.
For example, you could connect a ZigBee device and receiver and fault or
restore it's zone(s) based on the data received.
In order for this to happen you need to perform a couple configuration steps:
1. Enable zone expander emulation on your AlarmDecoder device by hitting '!'
in a terminal and going through the prompts.
2. Enable the zone expander in your panel programming. | ['Example', 'application', 'that', 'periodically', 'faults', 'a', 'virtual', 'zone', 'and', 'then', 'restores', 'it', '.'] | train | https://github.com/nutechsoftware/alarmdecoder/blob/b0c014089e24455228cb4402cf30ba98157578cd/examples/virtual_zone_expander.py#L12-L51 |
1,713 | python-diamond/Diamond | src/collectors/xen_collector/xen_collector.py | XENCollector.collect | def collect(self):
"""
Collect libvirt data
"""
if libvirt is None:
self.log.error('Unable to import either libvirt')
return {}
# Open a restricted (non-root) connection to the hypervisor
conn = libvirt.openReadOnly(None)
# Get hardware info
conninfo = conn.getInfo()
# Initialize variables
memallocated = 0
coresallocated = 0
totalcores = 0
results = {}
domIds = conn.listDomainsID()
if 0 in domIds:
# Total cores
domU = conn.lookupByID(0)
totalcores = domU.info()[3]
# Free Space
s = os.statvfs('/')
freeSpace = (s.f_bavail * s.f_frsize) / 1024
# Calculate allocated memory and cores
for i in domIds:
# Ignore 0
if i == 0:
continue
domU = conn.lookupByID(i)
dominfo = domU.info()
memallocated += dominfo[2]
if i > 0:
coresallocated += dominfo[3]
results = {
'InstalledMem': conninfo[1],
'MemAllocated': memallocated / 1024,
'MemFree': conninfo[1] - (memallocated / 1024),
'AllocatedCores': coresallocated,
'DiskFree': freeSpace,
'TotalCores': totalcores,
'FreeCores': (totalcores - coresallocated)
}
for k in results.keys():
self.publish(k, results[k], 0) | python | def collect(self):
"""
Collect libvirt data
"""
if libvirt is None:
self.log.error('Unable to import either libvirt')
return {}
# Open a restricted (non-root) connection to the hypervisor
conn = libvirt.openReadOnly(None)
# Get hardware info
conninfo = conn.getInfo()
# Initialize variables
memallocated = 0
coresallocated = 0
totalcores = 0
results = {}
domIds = conn.listDomainsID()
if 0 in domIds:
# Total cores
domU = conn.lookupByID(0)
totalcores = domU.info()[3]
# Free Space
s = os.statvfs('/')
freeSpace = (s.f_bavail * s.f_frsize) / 1024
# Calculate allocated memory and cores
for i in domIds:
# Ignore 0
if i == 0:
continue
domU = conn.lookupByID(i)
dominfo = domU.info()
memallocated += dominfo[2]
if i > 0:
coresallocated += dominfo[3]
results = {
'InstalledMem': conninfo[1],
'MemAllocated': memallocated / 1024,
'MemFree': conninfo[1] - (memallocated / 1024),
'AllocatedCores': coresallocated,
'DiskFree': freeSpace,
'TotalCores': totalcores,
'FreeCores': (totalcores - coresallocated)
}
for k in results.keys():
self.publish(k, results[k], 0) | ['def', 'collect', '(', 'self', ')', ':', 'if', 'libvirt', 'is', 'None', ':', 'self', '.', 'log', '.', 'error', '(', "'Unable to import either libvirt'", ')', 'return', '{', '}', '# Open a restricted (non-root) connection to the hypervisor', 'conn', '=', 'libvirt', '.', 'openReadOnly', '(', 'None', ')', '# Get hardware info', 'conninfo', '=', 'conn', '.', 'getInfo', '(', ')', '# Initialize variables', 'memallocated', '=', '0', 'coresallocated', '=', '0', 'totalcores', '=', '0', 'results', '=', '{', '}', 'domIds', '=', 'conn', '.', 'listDomainsID', '(', ')', 'if', '0', 'in', 'domIds', ':', '# Total cores', 'domU', '=', 'conn', '.', 'lookupByID', '(', '0', ')', 'totalcores', '=', 'domU', '.', 'info', '(', ')', '[', '3', ']', '# Free Space', 's', '=', 'os', '.', 'statvfs', '(', "'/'", ')', 'freeSpace', '=', '(', 's', '.', 'f_bavail', '*', 's', '.', 'f_frsize', ')', '/', '1024', '# Calculate allocated memory and cores', 'for', 'i', 'in', 'domIds', ':', '# Ignore 0', 'if', 'i', '==', '0', ':', 'continue', 'domU', '=', 'conn', '.', 'lookupByID', '(', 'i', ')', 'dominfo', '=', 'domU', '.', 'info', '(', ')', 'memallocated', '+=', 'dominfo', '[', '2', ']', 'if', 'i', '>', '0', ':', 'coresallocated', '+=', 'dominfo', '[', '3', ']', 'results', '=', '{', "'InstalledMem'", ':', 'conninfo', '[', '1', ']', ',', "'MemAllocated'", ':', 'memallocated', '/', '1024', ',', "'MemFree'", ':', 'conninfo', '[', '1', ']', '-', '(', 'memallocated', '/', '1024', ')', ',', "'AllocatedCores'", ':', 'coresallocated', ',', "'DiskFree'", ':', 'freeSpace', ',', "'TotalCores'", ':', 'totalcores', ',', "'FreeCores'", ':', '(', 'totalcores', '-', 'coresallocated', ')', '}', 'for', 'k', 'in', 'results', '.', 'keys', '(', ')', ':', 'self', '.', 'publish', '(', 'k', ',', 'results', '[', 'k', ']', ',', '0', ')'] | Collect libvirt data | ['Collect', 'libvirt', 'data'] | train | https://github.com/python-diamond/Diamond/blob/0f3eb04327d6d3ed5e53a9967d6c9d2c09714a47/src/collectors/xen_collector/xen_collector.py#L38-L82 |
1,714 | davenquinn/Attitude | attitude/display/plot/cov_types/misc.py | ci | def ci(a, which=95, axis=None):
"""Return a percentile range from an array of values."""
p = 50 - which / 2, 50 + which / 2
return percentiles(a, p, axis) | python | def ci(a, which=95, axis=None):
"""Return a percentile range from an array of values."""
p = 50 - which / 2, 50 + which / 2
return percentiles(a, p, axis) | ['def', 'ci', '(', 'a', ',', 'which', '=', '95', ',', 'axis', '=', 'None', ')', ':', 'p', '=', '50', '-', 'which', '/', '2', ',', '50', '+', 'which', '/', '2', 'return', 'percentiles', '(', 'a', ',', 'p', ',', 'axis', ')'] | Return a percentile range from an array of values. | ['Return', 'a', 'percentile', 'range', 'from', 'an', 'array', 'of', 'values', '.'] | train | https://github.com/davenquinn/Attitude/blob/2ce97b9aba0aa5deedc6617c2315e07e6396d240/attitude/display/plot/cov_types/misc.py#L40-L43 |
1,715 | jeongyoonlee/Kaggler | kaggler/model/nn.py | NN.predict | def predict(self, X):
"""Predict targets for a feature matrix.
Args:
X (np.array of float): feature matrix for prediction
Returns:
prediction (np.array)
"""
logger.info('predicting ...')
ps = self.predict_raw(X)
return sigm(ps[:, 0]) | python | def predict(self, X):
"""Predict targets for a feature matrix.
Args:
X (np.array of float): feature matrix for prediction
Returns:
prediction (np.array)
"""
logger.info('predicting ...')
ps = self.predict_raw(X)
return sigm(ps[:, 0]) | ['def', 'predict', '(', 'self', ',', 'X', ')', ':', 'logger', '.', 'info', '(', "'predicting ...'", ')', 'ps', '=', 'self', '.', 'predict_raw', '(', 'X', ')', 'return', 'sigm', '(', 'ps', '[', ':', ',', '0', ']', ')'] | Predict targets for a feature matrix.
Args:
X (np.array of float): feature matrix for prediction
Returns:
prediction (np.array) | ['Predict', 'targets', 'for', 'a', 'feature', 'matrix', '.'] | train | https://github.com/jeongyoonlee/Kaggler/blob/20661105b61958dc9a3c529c1d3b2313ab23ae32/kaggler/model/nn.py#L160-L172 |
1,716 | ethereum/py-evm | eth/db/journal.py | Journal.clear | def clear(self) -> None:
"""
Treat as if the *underlying* database will also be cleared by some other mechanism.
We build a special empty changeset just for marking that all previous data should
be ignored.
"""
# these internal records are used as a way to tell the difference between
# changes that came before and after the clear
self.record_changeset()
self._clears_at.add(self.latest_id)
self.record_changeset() | python | def clear(self) -> None:
"""
Treat as if the *underlying* database will also be cleared by some other mechanism.
We build a special empty changeset just for marking that all previous data should
be ignored.
"""
# these internal records are used as a way to tell the difference between
# changes that came before and after the clear
self.record_changeset()
self._clears_at.add(self.latest_id)
self.record_changeset() | ['def', 'clear', '(', 'self', ')', '->', 'None', ':', '# these internal records are used as a way to tell the difference between', '# changes that came before and after the clear', 'self', '.', 'record_changeset', '(', ')', 'self', '.', '_clears_at', '.', 'add', '(', 'self', '.', 'latest_id', ')', 'self', '.', 'record_changeset', '(', ')'] | Treat as if the *underlying* database will also be cleared by some other mechanism.
We build a special empty changeset just for marking that all previous data should
be ignored. | ['Treat', 'as', 'if', 'the', '*', 'underlying', '*', 'database', 'will', 'also', 'be', 'cleared', 'by', 'some', 'other', 'mechanism', '.', 'We', 'build', 'a', 'special', 'empty', 'changeset', 'just', 'for', 'marking', 'that', 'all', 'previous', 'data', 'should', 'be', 'ignored', '.'] | train | https://github.com/ethereum/py-evm/blob/58346848f076116381d3274bbcea96b9e2cfcbdf/eth/db/journal.py#L148-L158 |
1,717 | neighbordog/deviantart | deviantart/api.py | Api.get_watchers | def get_watchers(self, username, offset=0, limit=10):
"""Get the user's list of watchers
:param username: The username you want to get a list of watchers of
:param offset: the pagination offset
:param limit: the pagination limit
"""
response = self._req('/user/watchers/{}'.format(username), {
'offset' : offset,
'limit' : limit
})
watchers = []
for item in response['results']:
w = {}
w['user'] = User()
w['user'].from_dict(item['user'])
w['is_watching'] = item['is_watching']
w['lastvisit'] = item['lastvisit']
w['watch'] = {
"friend" : item['watch']['friend'],
"deviations" : item['watch']['deviations'],
"journals" : item['watch']['journals'],
"forum_threads" : item['watch']['forum_threads'],
"critiques" : item['watch']['critiques'],
"scraps" : item['watch']['scraps'],
"activity" : item['watch']['activity'],
"collections" : item['watch']['collections']
}
watchers.append(w)
return {
"results" : watchers,
"has_more" : response['has_more'],
"next_offset" : response['next_offset']
} | python | def get_watchers(self, username, offset=0, limit=10):
"""Get the user's list of watchers
:param username: The username you want to get a list of watchers of
:param offset: the pagination offset
:param limit: the pagination limit
"""
response = self._req('/user/watchers/{}'.format(username), {
'offset' : offset,
'limit' : limit
})
watchers = []
for item in response['results']:
w = {}
w['user'] = User()
w['user'].from_dict(item['user'])
w['is_watching'] = item['is_watching']
w['lastvisit'] = item['lastvisit']
w['watch'] = {
"friend" : item['watch']['friend'],
"deviations" : item['watch']['deviations'],
"journals" : item['watch']['journals'],
"forum_threads" : item['watch']['forum_threads'],
"critiques" : item['watch']['critiques'],
"scraps" : item['watch']['scraps'],
"activity" : item['watch']['activity'],
"collections" : item['watch']['collections']
}
watchers.append(w)
return {
"results" : watchers,
"has_more" : response['has_more'],
"next_offset" : response['next_offset']
} | ['def', 'get_watchers', '(', 'self', ',', 'username', ',', 'offset', '=', '0', ',', 'limit', '=', '10', ')', ':', 'response', '=', 'self', '.', '_req', '(', "'/user/watchers/{}'", '.', 'format', '(', 'username', ')', ',', '{', "'offset'", ':', 'offset', ',', "'limit'", ':', 'limit', '}', ')', 'watchers', '=', '[', ']', 'for', 'item', 'in', 'response', '[', "'results'", ']', ':', 'w', '=', '{', '}', 'w', '[', "'user'", ']', '=', 'User', '(', ')', 'w', '[', "'user'", ']', '.', 'from_dict', '(', 'item', '[', "'user'", ']', ')', 'w', '[', "'is_watching'", ']', '=', 'item', '[', "'is_watching'", ']', 'w', '[', "'lastvisit'", ']', '=', 'item', '[', "'lastvisit'", ']', 'w', '[', "'watch'", ']', '=', '{', '"friend"', ':', 'item', '[', "'watch'", ']', '[', "'friend'", ']', ',', '"deviations"', ':', 'item', '[', "'watch'", ']', '[', "'deviations'", ']', ',', '"journals"', ':', 'item', '[', "'watch'", ']', '[', "'journals'", ']', ',', '"forum_threads"', ':', 'item', '[', "'watch'", ']', '[', "'forum_threads'", ']', ',', '"critiques"', ':', 'item', '[', "'watch'", ']', '[', "'critiques'", ']', ',', '"scraps"', ':', 'item', '[', "'watch'", ']', '[', "'scraps'", ']', ',', '"activity"', ':', 'item', '[', "'watch'", ']', '[', "'activity'", ']', ',', '"collections"', ':', 'item', '[', "'watch'", ']', '[', "'collections'", ']', '}', 'watchers', '.', 'append', '(', 'w', ')', 'return', '{', '"results"', ':', 'watchers', ',', '"has_more"', ':', 'response', '[', "'has_more'", ']', ',', '"next_offset"', ':', 'response', '[', "'next_offset'", ']', '}'] | Get the user's list of watchers
:param username: The username you want to get a list of watchers of
:param offset: the pagination offset
:param limit: the pagination limit | ['Get', 'the', 'user', 's', 'list', 'of', 'watchers'] | train | https://github.com/neighbordog/deviantart/blob/5612f1d5e2139a48c9d793d7fd19cde7e162d7b1/deviantart/api.py#L1024-L1063 |
1,718 | tyarkoni/pliers | pliers/datasets/text.py | fetch_dictionary | def fetch_dictionary(name, url=None, format=None, index=0, rename=None,
save=True, force_retrieve=False):
''' Retrieve a dictionary of text norms from the web or local storage.
Args:
name (str): The name of the dictionary. If no url is passed, this must
match either one of the keys in the predefined dictionary file (see
dictionaries.json), or the name assigned to a previous dictionary
retrieved from a specific URL.
url (str): The URL of dictionary file to retrieve. Optional if name
matches an existing dictionary.
format (str): One of 'csv', 'tsv', 'xls', or None. Used to read data
appropriately. Note that most forms of compression will be detected
and handled automatically, so the format string refers only to the
format of the decompressed file. When format is None, the format
will be inferred from the filename.
index (str, int): The name or numeric index of the column to used as
the dictionary index. Passed directly to pd.ix.
rename (dict): An optional dictionary passed to pd.rename(); can be
used to rename columns in the loaded dictionary. Note that the
locally-saved dictionary will retain the renamed columns.
save (bool): Whether or not to save the dictionary locally the first
time it is retrieved.
force_retrieve (bool): If True, remote dictionary will always be
downloaded, even if a local copy exists (and the local copy will
be overwritten).
Returns: A pandas DataFrame indexed by strings (typically words).
'''
file_path = os.path.join(_get_dictionary_path(), name + '.csv')
if not force_retrieve and os.path.exists(file_path):
df = pd.read_csv(file_path)
index = datasets[name].get('index', df.columns[index])
return df.set_index(index)
if name in datasets:
url = datasets[name]['url']
format = datasets[name].get('format', format)
index = datasets[name].get('index', index)
rename = datasets.get('rename', rename)
if url is None:
raise ValueError("Dataset '%s' not found in local storage or presets, "
"and no download URL provided." % name)
data = _download_dictionary(url, format=format, rename=rename)
if isinstance(index, int):
index = data.columns[index]
data = data.set_index(index)
if save:
file_path = os.path.join(_get_dictionary_path(), name + '.csv')
data.to_csv(file_path, encoding='utf-8')
return data | python | def fetch_dictionary(name, url=None, format=None, index=0, rename=None,
save=True, force_retrieve=False):
''' Retrieve a dictionary of text norms from the web or local storage.
Args:
name (str): The name of the dictionary. If no url is passed, this must
match either one of the keys in the predefined dictionary file (see
dictionaries.json), or the name assigned to a previous dictionary
retrieved from a specific URL.
url (str): The URL of dictionary file to retrieve. Optional if name
matches an existing dictionary.
format (str): One of 'csv', 'tsv', 'xls', or None. Used to read data
appropriately. Note that most forms of compression will be detected
and handled automatically, so the format string refers only to the
format of the decompressed file. When format is None, the format
will be inferred from the filename.
index (str, int): The name or numeric index of the column to used as
the dictionary index. Passed directly to pd.ix.
rename (dict): An optional dictionary passed to pd.rename(); can be
used to rename columns in the loaded dictionary. Note that the
locally-saved dictionary will retain the renamed columns.
save (bool): Whether or not to save the dictionary locally the first
time it is retrieved.
force_retrieve (bool): If True, remote dictionary will always be
downloaded, even if a local copy exists (and the local copy will
be overwritten).
Returns: A pandas DataFrame indexed by strings (typically words).
'''
file_path = os.path.join(_get_dictionary_path(), name + '.csv')
if not force_retrieve and os.path.exists(file_path):
df = pd.read_csv(file_path)
index = datasets[name].get('index', df.columns[index])
return df.set_index(index)
if name in datasets:
url = datasets[name]['url']
format = datasets[name].get('format', format)
index = datasets[name].get('index', index)
rename = datasets.get('rename', rename)
if url is None:
raise ValueError("Dataset '%s' not found in local storage or presets, "
"and no download URL provided." % name)
data = _download_dictionary(url, format=format, rename=rename)
if isinstance(index, int):
index = data.columns[index]
data = data.set_index(index)
if save:
file_path = os.path.join(_get_dictionary_path(), name + '.csv')
data.to_csv(file_path, encoding='utf-8')
return data | ['def', 'fetch_dictionary', '(', 'name', ',', 'url', '=', 'None', ',', 'format', '=', 'None', ',', 'index', '=', '0', ',', 'rename', '=', 'None', ',', 'save', '=', 'True', ',', 'force_retrieve', '=', 'False', ')', ':', 'file_path', '=', 'os', '.', 'path', '.', 'join', '(', '_get_dictionary_path', '(', ')', ',', 'name', '+', "'.csv'", ')', 'if', 'not', 'force_retrieve', 'and', 'os', '.', 'path', '.', 'exists', '(', 'file_path', ')', ':', 'df', '=', 'pd', '.', 'read_csv', '(', 'file_path', ')', 'index', '=', 'datasets', '[', 'name', ']', '.', 'get', '(', "'index'", ',', 'df', '.', 'columns', '[', 'index', ']', ')', 'return', 'df', '.', 'set_index', '(', 'index', ')', 'if', 'name', 'in', 'datasets', ':', 'url', '=', 'datasets', '[', 'name', ']', '[', "'url'", ']', 'format', '=', 'datasets', '[', 'name', ']', '.', 'get', '(', "'format'", ',', 'format', ')', 'index', '=', 'datasets', '[', 'name', ']', '.', 'get', '(', "'index'", ',', 'index', ')', 'rename', '=', 'datasets', '.', 'get', '(', "'rename'", ',', 'rename', ')', 'if', 'url', 'is', 'None', ':', 'raise', 'ValueError', '(', '"Dataset \'%s\' not found in local storage or presets, "', '"and no download URL provided."', '%', 'name', ')', 'data', '=', '_download_dictionary', '(', 'url', ',', 'format', '=', 'format', ',', 'rename', '=', 'rename', ')', 'if', 'isinstance', '(', 'index', ',', 'int', ')', ':', 'index', '=', 'data', '.', 'columns', '[', 'index', ']', 'data', '=', 'data', '.', 'set_index', '(', 'index', ')', 'if', 'save', ':', 'file_path', '=', 'os', '.', 'path', '.', 'join', '(', '_get_dictionary_path', '(', ')', ',', 'name', '+', "'.csv'", ')', 'data', '.', 'to_csv', '(', 'file_path', ',', 'encoding', '=', "'utf-8'", ')', 'return', 'data'] | Retrieve a dictionary of text norms from the web or local storage.
Args:
name (str): The name of the dictionary. If no url is passed, this must
match either one of the keys in the predefined dictionary file (see
dictionaries.json), or the name assigned to a previous dictionary
retrieved from a specific URL.
url (str): The URL of dictionary file to retrieve. Optional if name
matches an existing dictionary.
format (str): One of 'csv', 'tsv', 'xls', or None. Used to read data
appropriately. Note that most forms of compression will be detected
and handled automatically, so the format string refers only to the
format of the decompressed file. When format is None, the format
will be inferred from the filename.
index (str, int): The name or numeric index of the column to used as
the dictionary index. Passed directly to pd.ix.
rename (dict): An optional dictionary passed to pd.rename(); can be
used to rename columns in the loaded dictionary. Note that the
locally-saved dictionary will retain the renamed columns.
save (bool): Whether or not to save the dictionary locally the first
time it is retrieved.
force_retrieve (bool): If True, remote dictionary will always be
downloaded, even if a local copy exists (and the local copy will
be overwritten).
Returns: A pandas DataFrame indexed by strings (typically words). | ['Retrieve', 'a', 'dictionary', 'of', 'text', 'norms', 'from', 'the', 'web', 'or', 'local', 'storage', '.'] | train | https://github.com/tyarkoni/pliers/blob/5b3385960ebd8c6ef1e86dd5e1be0080b2cb7f2b/pliers/datasets/text.py#L57-L111 |
1,719 | acutesoftware/AIKIF | aikif/toolbox/text_tools.py | identify_delim | def identify_delim(txt):
"""
identifies delimiters and returns a count by ROW
in the text file as well as the delimiter value (if any)
The delim is determined if the count of delims is consistant
in all rows.
"""
possible_delims = _get_dict_char_count(txt) # {'C': 3, 'a': 4, 'b': 5, 'c': 6, ',': 6, 'A': 3, '\n': 3, 'B': 3})
delim = max(possible_delims.keys(), key=(lambda k: possible_delims[k]))
"""
count_by_row = []
max_cols = 0
max_rows = 0
lines = txt.split('\n')
for line in lines:
if len(line) > max_cols:
max_cols = len(line)
this_count = _get_dict_char_count(line)
count_by_row.append(this_count)
print('line = ', line)
print('count_by_row = ', this_count)
max_rows += 1
# make a matrix
matrix = [[0 for i in range(max_rows)] for j in range(max_cols)]
pprint.pprint(matrix)
"""
return delim | python | def identify_delim(txt):
"""
identifies delimiters and returns a count by ROW
in the text file as well as the delimiter value (if any)
The delim is determined if the count of delims is consistant
in all rows.
"""
possible_delims = _get_dict_char_count(txt) # {'C': 3, 'a': 4, 'b': 5, 'c': 6, ',': 6, 'A': 3, '\n': 3, 'B': 3})
delim = max(possible_delims.keys(), key=(lambda k: possible_delims[k]))
"""
count_by_row = []
max_cols = 0
max_rows = 0
lines = txt.split('\n')
for line in lines:
if len(line) > max_cols:
max_cols = len(line)
this_count = _get_dict_char_count(line)
count_by_row.append(this_count)
print('line = ', line)
print('count_by_row = ', this_count)
max_rows += 1
# make a matrix
matrix = [[0 for i in range(max_rows)] for j in range(max_cols)]
pprint.pprint(matrix)
"""
return delim | ['def', 'identify_delim', '(', 'txt', ')', ':', 'possible_delims', '=', '_get_dict_char_count', '(', 'txt', ')', "# {'C': 3, 'a': 4, 'b': 5, 'c': 6, ',': 6, 'A': 3, '\\n': 3, 'B': 3})\r", 'delim', '=', 'max', '(', 'possible_delims', '.', 'keys', '(', ')', ',', 'key', '=', '(', 'lambda', 'k', ':', 'possible_delims', '[', 'k', ']', ')', ')', '"""\r\n\tcount_by_row = []\r\n\tmax_cols = 0\r\n\tmax_rows = 0\r\n\r\n\tlines = txt.split(\'\\n\')\r\n\tfor line in lines:\r\n\t\tif len(line) > max_cols:\r\n\t\t\tmax_cols = len(line)\r\n\t\tthis_count = _get_dict_char_count(line)\r\n\t\tcount_by_row.append(this_count)\r\n\t\tprint(\'line = \', line)\r\n\t\tprint(\'count_by_row = \', this_count)\r\n\t\tmax_rows += 1\r\n\r\n\t# make a matrix\r\n\tmatrix = [[0 for i in range(max_rows)] for j in range(max_cols)]\r\n\tpprint.pprint(matrix)\r\n\t"""', 'return', 'delim'] | identifies delimiters and returns a count by ROW
in the text file as well as the delimiter value (if any)
The delim is determined if the count of delims is consistant
in all rows. | ['identifies', 'delimiters', 'and', 'returns', 'a', 'count', 'by', 'ROW', 'in', 'the', 'text', 'file', 'as', 'well', 'as', 'the', 'delimiter', 'value', '(', 'if', 'any', ')', 'The', 'delim', 'is', 'determined', 'if', 'the', 'count', 'of', 'delims', 'is', 'consistant', 'in', 'all', 'rows', '.'] | train | https://github.com/acutesoftware/AIKIF/blob/fcf1582dc5f884b9a4fa7c6e20e9de9d94d21d03/aikif/toolbox/text_tools.py#L114-L146 |
1,720 | JdeRobot/base | src/drivers/MAVLinkServer/MAVProxy/pymavlink/dialects/v20/ardupilotmega.py | MAVLink.pid_tuning_encode | def pid_tuning_encode(self, axis, desired, achieved, FF, P, I, D):
'''
PID tuning information
axis : axis (uint8_t)
desired : desired rate (degrees/s) (float)
achieved : achieved rate (degrees/s) (float)
FF : FF component (float)
P : P component (float)
I : I component (float)
D : D component (float)
'''
return MAVLink_pid_tuning_message(axis, desired, achieved, FF, P, I, D) | python | def pid_tuning_encode(self, axis, desired, achieved, FF, P, I, D):
'''
PID tuning information
axis : axis (uint8_t)
desired : desired rate (degrees/s) (float)
achieved : achieved rate (degrees/s) (float)
FF : FF component (float)
P : P component (float)
I : I component (float)
D : D component (float)
'''
return MAVLink_pid_tuning_message(axis, desired, achieved, FF, P, I, D) | ['def', 'pid_tuning_encode', '(', 'self', ',', 'axis', ',', 'desired', ',', 'achieved', ',', 'FF', ',', 'P', ',', 'I', ',', 'D', ')', ':', 'return', 'MAVLink_pid_tuning_message', '(', 'axis', ',', 'desired', ',', 'achieved', ',', 'FF', ',', 'P', ',', 'I', ',', 'D', ')'] | PID tuning information
axis : axis (uint8_t)
desired : desired rate (degrees/s) (float)
achieved : achieved rate (degrees/s) (float)
FF : FF component (float)
P : P component (float)
I : I component (float)
D : D component (float) | ['PID', 'tuning', 'information'] | train | https://github.com/JdeRobot/base/blob/303b18992785b2fe802212f2d758a60873007f1f/src/drivers/MAVLinkServer/MAVProxy/pymavlink/dialects/v20/ardupilotmega.py#L10824-L10837 |
1,721 | n1analytics/python-paillier | phe/paillier.py | EncryptedNumber.obfuscate | def obfuscate(self):
"""Disguise ciphertext by multiplying by r ** n with random r.
This operation must be performed for every `EncryptedNumber`
that is sent to an untrusted party, otherwise eavesdroppers
might deduce relationships between this and an antecedent
`EncryptedNumber`.
For example::
enc = public_key.encrypt(1337)
send_to_nsa(enc) # NSA can't decrypt (we hope!)
product = enc * 3.14
send_to_nsa(product) # NSA can deduce 3.14 by bruteforce attack
product2 = enc * 2.718
product2.obfuscate()
send_to_nsa(product) # NSA can't deduce 2.718 by bruteforce attack
"""
r = self.public_key.get_random_lt_n()
r_pow_n = powmod(r, self.public_key.n, self.public_key.nsquare)
self.__ciphertext = self.__ciphertext * r_pow_n % self.public_key.nsquare
self.__is_obfuscated = True | python | def obfuscate(self):
"""Disguise ciphertext by multiplying by r ** n with random r.
This operation must be performed for every `EncryptedNumber`
that is sent to an untrusted party, otherwise eavesdroppers
might deduce relationships between this and an antecedent
`EncryptedNumber`.
For example::
enc = public_key.encrypt(1337)
send_to_nsa(enc) # NSA can't decrypt (we hope!)
product = enc * 3.14
send_to_nsa(product) # NSA can deduce 3.14 by bruteforce attack
product2 = enc * 2.718
product2.obfuscate()
send_to_nsa(product) # NSA can't deduce 2.718 by bruteforce attack
"""
r = self.public_key.get_random_lt_n()
r_pow_n = powmod(r, self.public_key.n, self.public_key.nsquare)
self.__ciphertext = self.__ciphertext * r_pow_n % self.public_key.nsquare
self.__is_obfuscated = True | ['def', 'obfuscate', '(', 'self', ')', ':', 'r', '=', 'self', '.', 'public_key', '.', 'get_random_lt_n', '(', ')', 'r_pow_n', '=', 'powmod', '(', 'r', ',', 'self', '.', 'public_key', '.', 'n', ',', 'self', '.', 'public_key', '.', 'nsquare', ')', 'self', '.', '__ciphertext', '=', 'self', '.', '__ciphertext', '*', 'r_pow_n', '%', 'self', '.', 'public_key', '.', 'nsquare', 'self', '.', '__is_obfuscated', '=', 'True'] | Disguise ciphertext by multiplying by r ** n with random r.
This operation must be performed for every `EncryptedNumber`
that is sent to an untrusted party, otherwise eavesdroppers
might deduce relationships between this and an antecedent
`EncryptedNumber`.
For example::
enc = public_key.encrypt(1337)
send_to_nsa(enc) # NSA can't decrypt (we hope!)
product = enc * 3.14
send_to_nsa(product) # NSA can deduce 3.14 by bruteforce attack
product2 = enc * 2.718
product2.obfuscate()
send_to_nsa(product) # NSA can't deduce 2.718 by bruteforce attack | ['Disguise', 'ciphertext', 'by', 'multiplying', 'by', 'r', '**', 'n', 'with', 'random', 'r', '.'] | train | https://github.com/n1analytics/python-paillier/blob/955f8c0bfa9623be15b75462b121d28acf70f04b/phe/paillier.py#L596-L617 |
1,722 | saltstack/salt | salt/returners/__init__.py | _fetch_option | def _fetch_option(cfg, ret_config, virtualname, attr_name):
"""
Fetch a given option value from the config.
@see :func:`get_returner_options`
"""
# c_cfg is a dictionary returned from config.option for
# any options configured for this returner.
if isinstance(cfg, dict):
c_cfg = cfg
else:
c_cfg = cfg('{0}'.format(virtualname), {})
default_cfg_key = '{0}.{1}'.format(virtualname, attr_name)
if not ret_config:
# Using the default configuration key
if isinstance(cfg, dict):
if default_cfg_key in cfg:
return cfg[default_cfg_key]
else:
return c_cfg.get(attr_name)
else:
return c_cfg.get(attr_name, cfg(default_cfg_key))
# Using ret_config to override the default configuration key
ret_cfg = cfg('{0}.{1}'.format(ret_config, virtualname), {})
override_default_cfg_key = '{0}.{1}.{2}'.format(
ret_config,
virtualname,
attr_name,
)
override_cfg_default = cfg(override_default_cfg_key)
# Look for the configuration item in the override location
ret_override_cfg = ret_cfg.get(
attr_name,
override_cfg_default
)
if ret_override_cfg:
return ret_override_cfg
# if not configuration item found, fall back to the default location.
return c_cfg.get(attr_name, cfg(default_cfg_key)) | python | def _fetch_option(cfg, ret_config, virtualname, attr_name):
"""
Fetch a given option value from the config.
@see :func:`get_returner_options`
"""
# c_cfg is a dictionary returned from config.option for
# any options configured for this returner.
if isinstance(cfg, dict):
c_cfg = cfg
else:
c_cfg = cfg('{0}'.format(virtualname), {})
default_cfg_key = '{0}.{1}'.format(virtualname, attr_name)
if not ret_config:
# Using the default configuration key
if isinstance(cfg, dict):
if default_cfg_key in cfg:
return cfg[default_cfg_key]
else:
return c_cfg.get(attr_name)
else:
return c_cfg.get(attr_name, cfg(default_cfg_key))
# Using ret_config to override the default configuration key
ret_cfg = cfg('{0}.{1}'.format(ret_config, virtualname), {})
override_default_cfg_key = '{0}.{1}.{2}'.format(
ret_config,
virtualname,
attr_name,
)
override_cfg_default = cfg(override_default_cfg_key)
# Look for the configuration item in the override location
ret_override_cfg = ret_cfg.get(
attr_name,
override_cfg_default
)
if ret_override_cfg:
return ret_override_cfg
# if not configuration item found, fall back to the default location.
return c_cfg.get(attr_name, cfg(default_cfg_key)) | ['def', '_fetch_option', '(', 'cfg', ',', 'ret_config', ',', 'virtualname', ',', 'attr_name', ')', ':', '# c_cfg is a dictionary returned from config.option for', '# any options configured for this returner.', 'if', 'isinstance', '(', 'cfg', ',', 'dict', ')', ':', 'c_cfg', '=', 'cfg', 'else', ':', 'c_cfg', '=', 'cfg', '(', "'{0}'", '.', 'format', '(', 'virtualname', ')', ',', '{', '}', ')', 'default_cfg_key', '=', "'{0}.{1}'", '.', 'format', '(', 'virtualname', ',', 'attr_name', ')', 'if', 'not', 'ret_config', ':', '# Using the default configuration key', 'if', 'isinstance', '(', 'cfg', ',', 'dict', ')', ':', 'if', 'default_cfg_key', 'in', 'cfg', ':', 'return', 'cfg', '[', 'default_cfg_key', ']', 'else', ':', 'return', 'c_cfg', '.', 'get', '(', 'attr_name', ')', 'else', ':', 'return', 'c_cfg', '.', 'get', '(', 'attr_name', ',', 'cfg', '(', 'default_cfg_key', ')', ')', '# Using ret_config to override the default configuration key', 'ret_cfg', '=', 'cfg', '(', "'{0}.{1}'", '.', 'format', '(', 'ret_config', ',', 'virtualname', ')', ',', '{', '}', ')', 'override_default_cfg_key', '=', "'{0}.{1}.{2}'", '.', 'format', '(', 'ret_config', ',', 'virtualname', ',', 'attr_name', ',', ')', 'override_cfg_default', '=', 'cfg', '(', 'override_default_cfg_key', ')', '# Look for the configuration item in the override location', 'ret_override_cfg', '=', 'ret_cfg', '.', 'get', '(', 'attr_name', ',', 'override_cfg_default', ')', 'if', 'ret_override_cfg', ':', 'return', 'ret_override_cfg', '# if not configuration item found, fall back to the default location.', 'return', 'c_cfg', '.', 'get', '(', 'attr_name', ',', 'cfg', '(', 'default_cfg_key', ')', ')'] | Fetch a given option value from the config.
@see :func:`get_returner_options` | ['Fetch', 'a', 'given', 'option', 'value', 'from', 'the', 'config', '.'] | train | https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/returners/__init__.py#L123-L166 |
1,723 | sorend/sshconf | sshconf.py | SshConfig.__check_host_args | def __check_host_args(self, host, keys):
"""Checks parameters"""
if host not in self.hosts_:
raise ValueError("Host %s: not found" % host)
if "host" in [x.lower() for x in keys]:
raise ValueError("Cannot modify Host value") | python | def __check_host_args(self, host, keys):
"""Checks parameters"""
if host not in self.hosts_:
raise ValueError("Host %s: not found" % host)
if "host" in [x.lower() for x in keys]:
raise ValueError("Cannot modify Host value") | ['def', '__check_host_args', '(', 'self', ',', 'host', ',', 'keys', ')', ':', 'if', 'host', 'not', 'in', 'self', '.', 'hosts_', ':', 'raise', 'ValueError', '(', '"Host %s: not found"', '%', 'host', ')', 'if', '"host"', 'in', '[', 'x', '.', 'lower', '(', ')', 'for', 'x', 'in', 'keys', ']', ':', 'raise', 'ValueError', '(', '"Cannot modify Host value"', ')'] | Checks parameters | ['Checks', 'parameters'] | train | https://github.com/sorend/sshconf/blob/59f3fc165b1ba9e76ba23444b1205d88462938f3/sshconf.py#L252-L258 |
1,724 | pyvisa/pyvisa | pyvisa/highlevel.py | VisaLibraryBase.install_visa_handler | def install_visa_handler(self, session, event_type, handler, user_handle=None):
"""Installs handlers for event callbacks.
:param session: Unique logical identifier to a session.
:param event_type: Logical event identifier.
:param handler: Interpreted as a valid reference to a handler to be installed by a client application.
:param user_handle: A value specified by an application that can be used for identifying handlers
uniquely for an event type.
:returns: user handle (a ctypes object)
"""
try:
new_handler = self.install_handler(session, event_type, handler, user_handle)
except TypeError as e:
raise errors.VisaTypeError(str(e))
self.handlers[session].append(new_handler + (event_type,))
return new_handler[1] | python | def install_visa_handler(self, session, event_type, handler, user_handle=None):
"""Installs handlers for event callbacks.
:param session: Unique logical identifier to a session.
:param event_type: Logical event identifier.
:param handler: Interpreted as a valid reference to a handler to be installed by a client application.
:param user_handle: A value specified by an application that can be used for identifying handlers
uniquely for an event type.
:returns: user handle (a ctypes object)
"""
try:
new_handler = self.install_handler(session, event_type, handler, user_handle)
except TypeError as e:
raise errors.VisaTypeError(str(e))
self.handlers[session].append(new_handler + (event_type,))
return new_handler[1] | ['def', 'install_visa_handler', '(', 'self', ',', 'session', ',', 'event_type', ',', 'handler', ',', 'user_handle', '=', 'None', ')', ':', 'try', ':', 'new_handler', '=', 'self', '.', 'install_handler', '(', 'session', ',', 'event_type', ',', 'handler', ',', 'user_handle', ')', 'except', 'TypeError', 'as', 'e', ':', 'raise', 'errors', '.', 'VisaTypeError', '(', 'str', '(', 'e', ')', ')', 'self', '.', 'handlers', '[', 'session', ']', '.', 'append', '(', 'new_handler', '+', '(', 'event_type', ',', ')', ')', 'return', 'new_handler', '[', '1', ']'] | Installs handlers for event callbacks.
:param session: Unique logical identifier to a session.
:param event_type: Logical event identifier.
:param handler: Interpreted as a valid reference to a handler to be installed by a client application.
:param user_handle: A value specified by an application that can be used for identifying handlers
uniquely for an event type.
:returns: user handle (a ctypes object) | ['Installs', 'handlers', 'for', 'event', 'callbacks', '.'] | train | https://github.com/pyvisa/pyvisa/blob/b8b2d4371e1f00782856aa9176ff1ced6bcb3798/pyvisa/highlevel.py#L175-L191 |
1,725 | plandes/actioncli | src/python/zensols/actioncli/config.py | Configurable.populate | def populate(self, obj=None, section=None, parse_types=True):
"""Set attributes in ``obj`` with ``setattr`` from the all values in
``section``.
"""
section = self.default_section if section is None else section
obj = Settings() if obj is None else obj
is_dict = isinstance(obj, dict)
for k, v in self.get_options(section).items():
if parse_types:
if v == 'None':
v = None
elif self.FLOAT_REGEXP.match(v):
v = float(v)
elif self.INT_REGEXP.match(v):
v = int(v)
elif self.BOOL_REGEXP.match(v):
v = v == 'True'
else:
m = self.EVAL_REGEXP.match(v)
if m:
evalstr = m.group(1)
v = eval(evalstr)
logger.debug('setting {} => {} on {}'.format(k, v, obj))
if is_dict:
obj[k] = v
else:
setattr(obj, k, v)
return obj | python | def populate(self, obj=None, section=None, parse_types=True):
"""Set attributes in ``obj`` with ``setattr`` from the all values in
``section``.
"""
section = self.default_section if section is None else section
obj = Settings() if obj is None else obj
is_dict = isinstance(obj, dict)
for k, v in self.get_options(section).items():
if parse_types:
if v == 'None':
v = None
elif self.FLOAT_REGEXP.match(v):
v = float(v)
elif self.INT_REGEXP.match(v):
v = int(v)
elif self.BOOL_REGEXP.match(v):
v = v == 'True'
else:
m = self.EVAL_REGEXP.match(v)
if m:
evalstr = m.group(1)
v = eval(evalstr)
logger.debug('setting {} => {} on {}'.format(k, v, obj))
if is_dict:
obj[k] = v
else:
setattr(obj, k, v)
return obj | ['def', 'populate', '(', 'self', ',', 'obj', '=', 'None', ',', 'section', '=', 'None', ',', 'parse_types', '=', 'True', ')', ':', 'section', '=', 'self', '.', 'default_section', 'if', 'section', 'is', 'None', 'else', 'section', 'obj', '=', 'Settings', '(', ')', 'if', 'obj', 'is', 'None', 'else', 'obj', 'is_dict', '=', 'isinstance', '(', 'obj', ',', 'dict', ')', 'for', 'k', ',', 'v', 'in', 'self', '.', 'get_options', '(', 'section', ')', '.', 'items', '(', ')', ':', 'if', 'parse_types', ':', 'if', 'v', '==', "'None'", ':', 'v', '=', 'None', 'elif', 'self', '.', 'FLOAT_REGEXP', '.', 'match', '(', 'v', ')', ':', 'v', '=', 'float', '(', 'v', ')', 'elif', 'self', '.', 'INT_REGEXP', '.', 'match', '(', 'v', ')', ':', 'v', '=', 'int', '(', 'v', ')', 'elif', 'self', '.', 'BOOL_REGEXP', '.', 'match', '(', 'v', ')', ':', 'v', '=', 'v', '==', "'True'", 'else', ':', 'm', '=', 'self', '.', 'EVAL_REGEXP', '.', 'match', '(', 'v', ')', 'if', 'm', ':', 'evalstr', '=', 'm', '.', 'group', '(', '1', ')', 'v', '=', 'eval', '(', 'evalstr', ')', 'logger', '.', 'debug', '(', "'setting {} => {} on {}'", '.', 'format', '(', 'k', ',', 'v', ',', 'obj', ')', ')', 'if', 'is_dict', ':', 'obj', '[', 'k', ']', '=', 'v', 'else', ':', 'setattr', '(', 'obj', ',', 'k', ',', 'v', ')', 'return', 'obj'] | Set attributes in ``obj`` with ``setattr`` from the all values in
``section``. | ['Set', 'attributes', 'in', 'obj', 'with', 'setattr', 'from', 'the', 'all', 'values', 'in', 'section', '.'] | train | https://github.com/plandes/actioncli/blob/d1c4ea27e6f3394b30a1652ddd4b916160662773/src/python/zensols/actioncli/config.py#L49-L77 |
1,726 | korfuri/django-prometheus | django_prometheus/models.py | ExportModelOperationsMixin | def ExportModelOperationsMixin(model_name):
"""Returns a mixin for models to export counters for lifecycle operations.
Usage:
class User(ExportModelOperationsMixin('user'), Model):
...
"""
# Force create the labels for this model in the counters. This
# is not necessary but it avoids gaps in the aggregated data.
model_inserts.labels(model_name)
model_updates.labels(model_name)
model_deletes.labels(model_name)
class Mixin(object):
def _do_insert(self, *args, **kwargs):
model_inserts.labels(model_name).inc()
return super(Mixin, self)._do_insert(*args, **kwargs)
def _do_update(self, *args, **kwargs):
model_updates.labels(model_name).inc()
return super(Mixin, self)._do_update(*args, **kwargs)
def delete(self, *args, **kwargs):
model_deletes.labels(model_name).inc()
return super(Mixin, self).delete(*args, **kwargs)
return Mixin | python | def ExportModelOperationsMixin(model_name):
"""Returns a mixin for models to export counters for lifecycle operations.
Usage:
class User(ExportModelOperationsMixin('user'), Model):
...
"""
# Force create the labels for this model in the counters. This
# is not necessary but it avoids gaps in the aggregated data.
model_inserts.labels(model_name)
model_updates.labels(model_name)
model_deletes.labels(model_name)
class Mixin(object):
def _do_insert(self, *args, **kwargs):
model_inserts.labels(model_name).inc()
return super(Mixin, self)._do_insert(*args, **kwargs)
def _do_update(self, *args, **kwargs):
model_updates.labels(model_name).inc()
return super(Mixin, self)._do_update(*args, **kwargs)
def delete(self, *args, **kwargs):
model_deletes.labels(model_name).inc()
return super(Mixin, self).delete(*args, **kwargs)
return Mixin | ['def', 'ExportModelOperationsMixin', '(', 'model_name', ')', ':', '# Force create the labels for this model in the counters. This', '# is not necessary but it avoids gaps in the aggregated data.', 'model_inserts', '.', 'labels', '(', 'model_name', ')', 'model_updates', '.', 'labels', '(', 'model_name', ')', 'model_deletes', '.', 'labels', '(', 'model_name', ')', 'class', 'Mixin', '(', 'object', ')', ':', 'def', '_do_insert', '(', 'self', ',', '*', 'args', ',', '*', '*', 'kwargs', ')', ':', 'model_inserts', '.', 'labels', '(', 'model_name', ')', '.', 'inc', '(', ')', 'return', 'super', '(', 'Mixin', ',', 'self', ')', '.', '_do_insert', '(', '*', 'args', ',', '*', '*', 'kwargs', ')', 'def', '_do_update', '(', 'self', ',', '*', 'args', ',', '*', '*', 'kwargs', ')', ':', 'model_updates', '.', 'labels', '(', 'model_name', ')', '.', 'inc', '(', ')', 'return', 'super', '(', 'Mixin', ',', 'self', ')', '.', '_do_update', '(', '*', 'args', ',', '*', '*', 'kwargs', ')', 'def', 'delete', '(', 'self', ',', '*', 'args', ',', '*', '*', 'kwargs', ')', ':', 'model_deletes', '.', 'labels', '(', 'model_name', ')', '.', 'inc', '(', ')', 'return', 'super', '(', 'Mixin', ',', 'self', ')', '.', 'delete', '(', '*', 'args', ',', '*', '*', 'kwargs', ')', 'return', 'Mixin'] | Returns a mixin for models to export counters for lifecycle operations.
Usage:
class User(ExportModelOperationsMixin('user'), Model):
... | ['Returns', 'a', 'mixin', 'for', 'models', 'to', 'export', 'counters', 'for', 'lifecycle', 'operations', '.'] | train | https://github.com/korfuri/django-prometheus/blob/c3a19ce46d812f76d9316e50a232878c27c9bdf5/django_prometheus/models.py#L19-L44 |
1,727 | iotile/coretools | iotilebuild/iotile/build/build/build.py | TargetSettings.archs | def archs(self, as_list=False):
"""Return all of the architectures for this target.
Args:
as_list (bool): Return a list instead of the default set object.
Returns:
set or list: All of the architectures used in this TargetSettings object.
"""
archs = self.arch_list().split('/')
if as_list:
return archs
return set(archs) | python | def archs(self, as_list=False):
"""Return all of the architectures for this target.
Args:
as_list (bool): Return a list instead of the default set object.
Returns:
set or list: All of the architectures used in this TargetSettings object.
"""
archs = self.arch_list().split('/')
if as_list:
return archs
return set(archs) | ['def', 'archs', '(', 'self', ',', 'as_list', '=', 'False', ')', ':', 'archs', '=', 'self', '.', 'arch_list', '(', ')', '.', 'split', '(', "'/'", ')', 'if', 'as_list', ':', 'return', 'archs', 'return', 'set', '(', 'archs', ')'] | Return all of the architectures for this target.
Args:
as_list (bool): Return a list instead of the default set object.
Returns:
set or list: All of the architectures used in this TargetSettings object. | ['Return', 'all', 'of', 'the', 'architectures', 'for', 'this', 'target', '.'] | train | https://github.com/iotile/coretools/blob/2d794f5f1346b841b0dcd16c9d284e9bf2f3c6ec/iotilebuild/iotile/build/build/build.py#L92-L107 |
1,728 | boriel/zxbasic | arch/zx48k/backend/__parray.py | _pastorestr | def _pastorestr(ins):
''' Stores a string value into a memory address.
It copies content of 2nd operand (string), into 1st, reallocating
dynamic memory for the 1st str. These instruction DOES ALLOW
inmediate strings for the 2nd parameter, starting with '#'.
'''
output = _paddr(ins.quad[1])
temporal = False
value = ins.quad[2]
indirect = value[0] == '*'
if indirect:
value = value[1:]
immediate = value[0]
if immediate:
value = value[1:]
if value[0] == '_':
if indirect:
if immediate:
output.append('ld de, (%s)' % value)
else:
output.append('ld de, (%s)' % value)
output.append('call __LOAD_DE_DE')
REQUIRES.add('lddede.asm')
else:
if immediate:
output.append('ld de, %s' % value)
else:
output.append('ld de, (%s)' % value)
else:
output.append('pop de')
temporal = True
if indirect:
output.append('call __LOAD_DE_DE')
REQUIRES.add('lddede.asm')
if not temporal:
output.append('call __STORE_STR')
REQUIRES.add('storestr.asm')
else: # A value already on dynamic memory
output.append('call __STORE_STR2')
REQUIRES.add('storestr2.asm')
return output | python | def _pastorestr(ins):
''' Stores a string value into a memory address.
It copies content of 2nd operand (string), into 1st, reallocating
dynamic memory for the 1st str. These instruction DOES ALLOW
inmediate strings for the 2nd parameter, starting with '#'.
'''
output = _paddr(ins.quad[1])
temporal = False
value = ins.quad[2]
indirect = value[0] == '*'
if indirect:
value = value[1:]
immediate = value[0]
if immediate:
value = value[1:]
if value[0] == '_':
if indirect:
if immediate:
output.append('ld de, (%s)' % value)
else:
output.append('ld de, (%s)' % value)
output.append('call __LOAD_DE_DE')
REQUIRES.add('lddede.asm')
else:
if immediate:
output.append('ld de, %s' % value)
else:
output.append('ld de, (%s)' % value)
else:
output.append('pop de')
temporal = True
if indirect:
output.append('call __LOAD_DE_DE')
REQUIRES.add('lddede.asm')
if not temporal:
output.append('call __STORE_STR')
REQUIRES.add('storestr.asm')
else: # A value already on dynamic memory
output.append('call __STORE_STR2')
REQUIRES.add('storestr2.asm')
return output | ['def', '_pastorestr', '(', 'ins', ')', ':', 'output', '=', '_paddr', '(', 'ins', '.', 'quad', '[', '1', ']', ')', 'temporal', '=', 'False', 'value', '=', 'ins', '.', 'quad', '[', '2', ']', 'indirect', '=', 'value', '[', '0', ']', '==', "'*'", 'if', 'indirect', ':', 'value', '=', 'value', '[', '1', ':', ']', 'immediate', '=', 'value', '[', '0', ']', 'if', 'immediate', ':', 'value', '=', 'value', '[', '1', ':', ']', 'if', 'value', '[', '0', ']', '==', "'_'", ':', 'if', 'indirect', ':', 'if', 'immediate', ':', 'output', '.', 'append', '(', "'ld de, (%s)'", '%', 'value', ')', 'else', ':', 'output', '.', 'append', '(', "'ld de, (%s)'", '%', 'value', ')', 'output', '.', 'append', '(', "'call __LOAD_DE_DE'", ')', 'REQUIRES', '.', 'add', '(', "'lddede.asm'", ')', 'else', ':', 'if', 'immediate', ':', 'output', '.', 'append', '(', "'ld de, %s'", '%', 'value', ')', 'else', ':', 'output', '.', 'append', '(', "'ld de, (%s)'", '%', 'value', ')', 'else', ':', 'output', '.', 'append', '(', "'pop de'", ')', 'temporal', '=', 'True', 'if', 'indirect', ':', 'output', '.', 'append', '(', "'call __LOAD_DE_DE'", ')', 'REQUIRES', '.', 'add', '(', "'lddede.asm'", ')', 'if', 'not', 'temporal', ':', 'output', '.', 'append', '(', "'call __STORE_STR'", ')', 'REQUIRES', '.', 'add', '(', "'storestr.asm'", ')', 'else', ':', '# A value already on dynamic memory', 'output', '.', 'append', '(', "'call __STORE_STR2'", ')', 'REQUIRES', '.', 'add', '(', "'storestr2.asm'", ')', 'return', 'output'] | Stores a string value into a memory address.
It copies content of 2nd operand (string), into 1st, reallocating
dynamic memory for the 1st str. These instruction DOES ALLOW
inmediate strings for the 2nd parameter, starting with '#'. | ['Stores', 'a', 'string', 'value', 'into', 'a', 'memory', 'address', '.', 'It', 'copies', 'content', 'of', '2nd', 'operand', '(', 'string', ')', 'into', '1st', 'reallocating', 'dynamic', 'memory', 'for', 'the', '1st', 'str', '.', 'These', 'instruction', 'DOES', 'ALLOW', 'inmediate', 'strings', 'for', 'the', '2nd', 'parameter', 'starting', 'with', '#', '.'] | train | https://github.com/boriel/zxbasic/blob/23b28db10e41117805bdb3c0f78543590853b132/arch/zx48k/backend/__parray.py#L308-L354 |
1,729 | serge-sans-paille/pythran | pythran/types/types.py | Types.visit_Return | def visit_Return(self, node):
""" Compute return type and merges with others possible return type."""
self.generic_visit(node)
# No merge are done if the function is a generator.
if not self.yield_points:
assert node.value, "Values were added in each return statement."
self.combine(self.current, node.value) | python | def visit_Return(self, node):
""" Compute return type and merges with others possible return type."""
self.generic_visit(node)
# No merge are done if the function is a generator.
if not self.yield_points:
assert node.value, "Values were added in each return statement."
self.combine(self.current, node.value) | ['def', 'visit_Return', '(', 'self', ',', 'node', ')', ':', 'self', '.', 'generic_visit', '(', 'node', ')', '# No merge are done if the function is a generator.', 'if', 'not', 'self', '.', 'yield_points', ':', 'assert', 'node', '.', 'value', ',', '"Values were added in each return statement."', 'self', '.', 'combine', '(', 'self', '.', 'current', ',', 'node', '.', 'value', ')'] | Compute return type and merges with others possible return type. | ['Compute', 'return', 'type', 'and', 'merges', 'with', 'others', 'possible', 'return', 'type', '.'] | train | https://github.com/serge-sans-paille/pythran/blob/7e1b5af2dddfabc50bd2a977f0178be269b349b5/pythran/types/types.py#L293-L299 |
1,730 | twisted/mantissa | xmantissa/liveform.py | ListChangeParameter._coerceAll | def _coerceAll(self, inputs):
"""
XXX
"""
def associate(result, obj):
return (obj, result)
coerceDeferreds = []
for obj, dataSet in inputs:
oneCoerce = self._coerceSingleRepetition(dataSet)
oneCoerce.addCallback(associate, obj)
coerceDeferreds.append(oneCoerce)
return gatherResults(coerceDeferreds) | python | def _coerceAll(self, inputs):
"""
XXX
"""
def associate(result, obj):
return (obj, result)
coerceDeferreds = []
for obj, dataSet in inputs:
oneCoerce = self._coerceSingleRepetition(dataSet)
oneCoerce.addCallback(associate, obj)
coerceDeferreds.append(oneCoerce)
return gatherResults(coerceDeferreds) | ['def', '_coerceAll', '(', 'self', ',', 'inputs', ')', ':', 'def', 'associate', '(', 'result', ',', 'obj', ')', ':', 'return', '(', 'obj', ',', 'result', ')', 'coerceDeferreds', '=', '[', ']', 'for', 'obj', ',', 'dataSet', 'in', 'inputs', ':', 'oneCoerce', '=', 'self', '.', '_coerceSingleRepetition', '(', 'dataSet', ')', 'oneCoerce', '.', 'addCallback', '(', 'associate', ',', 'obj', ')', 'coerceDeferreds', '.', 'append', '(', 'oneCoerce', ')', 'return', 'gatherResults', '(', 'coerceDeferreds', ')'] | XXX | ['XXX'] | train | https://github.com/twisted/mantissa/blob/53e5502aba23ce99be78b27f923a276593033fe8/xmantissa/liveform.py#L531-L543 |
1,731 | aio-libs/aiodocker | aiodocker/swarm.py | DockerSwarm.join | async def join(
self,
*,
remote_addrs: Iterable[str],
listen_addr: str = "0.0.0.0:2377",
join_token: str,
advertise_addr: str = None,
data_path_addr: str = None
) -> bool:
"""
Join a swarm.
Args:
listen_addr
Used for inter-manager communication
advertise_addr
Externally reachable address advertised to other nodes.
data_path_addr
Address or interface to use for data path traffic.
remote_addrs
Addresses of manager nodes already participating in the swarm.
join_token
Secret token for joining this swarm.
"""
data = {
"RemoteAddrs": list(remote_addrs),
"JoinToken": join_token,
"ListenAddr": listen_addr,
"AdvertiseAddr": advertise_addr,
"DataPathAddr": data_path_addr,
}
await self.docker._query("swarm/join", method="POST", data=clean_map(data))
return True | python | async def join(
self,
*,
remote_addrs: Iterable[str],
listen_addr: str = "0.0.0.0:2377",
join_token: str,
advertise_addr: str = None,
data_path_addr: str = None
) -> bool:
"""
Join a swarm.
Args:
listen_addr
Used for inter-manager communication
advertise_addr
Externally reachable address advertised to other nodes.
data_path_addr
Address or interface to use for data path traffic.
remote_addrs
Addresses of manager nodes already participating in the swarm.
join_token
Secret token for joining this swarm.
"""
data = {
"RemoteAddrs": list(remote_addrs),
"JoinToken": join_token,
"ListenAddr": listen_addr,
"AdvertiseAddr": advertise_addr,
"DataPathAddr": data_path_addr,
}
await self.docker._query("swarm/join", method="POST", data=clean_map(data))
return True | ['async', 'def', 'join', '(', 'self', ',', '*', ',', 'remote_addrs', ':', 'Iterable', '[', 'str', ']', ',', 'listen_addr', ':', 'str', '=', '"0.0.0.0:2377"', ',', 'join_token', ':', 'str', ',', 'advertise_addr', ':', 'str', '=', 'None', ',', 'data_path_addr', ':', 'str', '=', 'None', ')', '->', 'bool', ':', 'data', '=', '{', '"RemoteAddrs"', ':', 'list', '(', 'remote_addrs', ')', ',', '"JoinToken"', ':', 'join_token', ',', '"ListenAddr"', ':', 'listen_addr', ',', '"AdvertiseAddr"', ':', 'advertise_addr', ',', '"DataPathAddr"', ':', 'data_path_addr', ',', '}', 'await', 'self', '.', 'docker', '.', '_query', '(', '"swarm/join"', ',', 'method', '=', '"POST"', ',', 'data', '=', 'clean_map', '(', 'data', ')', ')', 'return', 'True'] | Join a swarm.
Args:
listen_addr
Used for inter-manager communication
advertise_addr
Externally reachable address advertised to other nodes.
data_path_addr
Address or interface to use for data path traffic.
remote_addrs
Addresses of manager nodes already participating in the swarm.
join_token
Secret token for joining this swarm. | ['Join', 'a', 'swarm', '.'] | train | https://github.com/aio-libs/aiodocker/blob/88d0285ddba8e606ff684278e0a831347209189c/aiodocker/swarm.py#L54-L93 |
1,732 | gersolar/goescalibration | goescalibration/instrument.py | calibrate | def calibrate(filename):
"""
Append the calibration parameters as variables of the netcdf file.
Keyword arguments:
filename -- the name of a netcdf file.
"""
params = calibration_to(filename)
with nc.loader(filename) as root:
for key, value in params.items():
nc.getdim(root, 'xc_1', 1)
nc.getdim(root, 'yc_1', 1)
if isinstance(value, list):
for i in range(len(value)):
nc.getvar(root, '%s_%i' % (key, i), 'f4', ('time', 'yc_1', 'xc_1' ))[:] = value[i]
else:
nc.getvar(root, key, 'f4', ('time', 'yc_1', 'xc_1'))[:] = value | python | def calibrate(filename):
"""
Append the calibration parameters as variables of the netcdf file.
Keyword arguments:
filename -- the name of a netcdf file.
"""
params = calibration_to(filename)
with nc.loader(filename) as root:
for key, value in params.items():
nc.getdim(root, 'xc_1', 1)
nc.getdim(root, 'yc_1', 1)
if isinstance(value, list):
for i in range(len(value)):
nc.getvar(root, '%s_%i' % (key, i), 'f4', ('time', 'yc_1', 'xc_1' ))[:] = value[i]
else:
nc.getvar(root, key, 'f4', ('time', 'yc_1', 'xc_1'))[:] = value | ['def', 'calibrate', '(', 'filename', ')', ':', 'params', '=', 'calibration_to', '(', 'filename', ')', 'with', 'nc', '.', 'loader', '(', 'filename', ')', 'as', 'root', ':', 'for', 'key', ',', 'value', 'in', 'params', '.', 'items', '(', ')', ':', 'nc', '.', 'getdim', '(', 'root', ',', "'xc_1'", ',', '1', ')', 'nc', '.', 'getdim', '(', 'root', ',', "'yc_1'", ',', '1', ')', 'if', 'isinstance', '(', 'value', ',', 'list', ')', ':', 'for', 'i', 'in', 'range', '(', 'len', '(', 'value', ')', ')', ':', 'nc', '.', 'getvar', '(', 'root', ',', "'%s_%i'", '%', '(', 'key', ',', 'i', ')', ',', "'f4'", ',', '(', "'time'", ',', "'yc_1'", ',', "'xc_1'", ')', ')', '[', ':', ']', '=', 'value', '[', 'i', ']', 'else', ':', 'nc', '.', 'getvar', '(', 'root', ',', 'key', ',', "'f4'", ',', '(', "'time'", ',', "'yc_1'", ',', "'xc_1'", ')', ')', '[', ':', ']', '=', 'value'] | Append the calibration parameters as variables of the netcdf file.
Keyword arguments:
filename -- the name of a netcdf file. | ['Append', 'the', 'calibration', 'parameters', 'as', 'variables', 'of', 'the', 'netcdf', 'file', '.'] | train | https://github.com/gersolar/goescalibration/blob/aab7f3e3cede9694e90048ceeaea74566578bc75/goescalibration/instrument.py#L37-L53 |
1,733 | cloud-custodian/cloud-custodian | c7n/cli.py | _logs_options | def _logs_options(p):
""" Add options specific to logs subcommand. """
_default_options(p, blacklist=['cache', 'quiet'])
# default time range is 0 to "now" (to include all log entries)
p.add_argument(
'--start',
default='the beginning', # invalid, will result in 0
help='Start date and/or time',
)
p.add_argument(
'--end',
default=datetime.now().strftime('%c'),
help='End date and/or time',
) | python | def _logs_options(p):
""" Add options specific to logs subcommand. """
_default_options(p, blacklist=['cache', 'quiet'])
# default time range is 0 to "now" (to include all log entries)
p.add_argument(
'--start',
default='the beginning', # invalid, will result in 0
help='Start date and/or time',
)
p.add_argument(
'--end',
default=datetime.now().strftime('%c'),
help='End date and/or time',
) | ['def', '_logs_options', '(', 'p', ')', ':', '_default_options', '(', 'p', ',', 'blacklist', '=', '[', "'cache'", ',', "'quiet'", ']', ')', '# default time range is 0 to "now" (to include all log entries)', 'p', '.', 'add_argument', '(', "'--start'", ',', 'default', '=', "'the beginning'", ',', '# invalid, will result in 0', 'help', '=', "'Start date and/or time'", ',', ')', 'p', '.', 'add_argument', '(', "'--end'", ',', 'default', '=', 'datetime', '.', 'now', '(', ')', '.', 'strftime', '(', "'%c'", ')', ',', 'help', '=', "'End date and/or time'", ',', ')'] | Add options specific to logs subcommand. | ['Add', 'options', 'specific', 'to', 'logs', 'subcommand', '.'] | train | https://github.com/cloud-custodian/cloud-custodian/blob/52ef732eb3d7bc939d1579faf519314814695c08/c7n/cli.py#L153-L167 |
1,734 | FutunnOpen/futuquant | futuquant/quote/quote_response_handler.py | BrokerHandlerBase.on_recv_rsp | def on_recv_rsp(self, rsp_pb):
"""
在收到实时经纪数据推送后会回调到该函数，使用者需要在派生类中覆盖此方法
注意该回调是在独立子线程中
:param rsp_pb: 派生类中不需要直接处理该参数
:return: 成功时返回(RET_OK, stock_code, [bid_frame_table, ask_frame_table]), 相关frame table含义见 get_broker_queue_ 的返回值说明
失败时返回(RET_ERROR, ERR_MSG, None)
"""
ret_code, content = self.parse_rsp_pb(rsp_pb)
if ret_code != RET_OK:
return ret_code, content, None
else:
stock_code, bid_content, ask_content = content
bid_list = [
'code', 'bid_broker_id', 'bid_broker_name', 'bid_broker_pos'
]
ask_list = [
'code', 'ask_broker_id', 'ask_broker_name', 'ask_broker_pos'
]
bid_frame_table = pd.DataFrame(bid_content, columns=bid_list)
ask_frame_table = pd.DataFrame(ask_content, columns=ask_list)
return RET_OK, stock_code, [bid_frame_table, ask_frame_table] | python | def on_recv_rsp(self, rsp_pb):
"""
在收到实时经纪数据推送后会回调到该函数，使用者需要在派生类中覆盖此方法
注意该回调是在独立子线程中
:param rsp_pb: 派生类中不需要直接处理该参数
:return: 成功时返回(RET_OK, stock_code, [bid_frame_table, ask_frame_table]), 相关frame table含义见 get_broker_queue_ 的返回值说明
失败时返回(RET_ERROR, ERR_MSG, None)
"""
ret_code, content = self.parse_rsp_pb(rsp_pb)
if ret_code != RET_OK:
return ret_code, content, None
else:
stock_code, bid_content, ask_content = content
bid_list = [
'code', 'bid_broker_id', 'bid_broker_name', 'bid_broker_pos'
]
ask_list = [
'code', 'ask_broker_id', 'ask_broker_name', 'ask_broker_pos'
]
bid_frame_table = pd.DataFrame(bid_content, columns=bid_list)
ask_frame_table = pd.DataFrame(ask_content, columns=ask_list)
return RET_OK, stock_code, [bid_frame_table, ask_frame_table] | ['def', 'on_recv_rsp', '(', 'self', ',', 'rsp_pb', ')', ':', 'ret_code', ',', 'content', '=', 'self', '.', 'parse_rsp_pb', '(', 'rsp_pb', ')', 'if', 'ret_code', '!=', 'RET_OK', ':', 'return', 'ret_code', ',', 'content', ',', 'None', 'else', ':', 'stock_code', ',', 'bid_content', ',', 'ask_content', '=', 'content', 'bid_list', '=', '[', "'code'", ',', "'bid_broker_id'", ',', "'bid_broker_name'", ',', "'bid_broker_pos'", ']', 'ask_list', '=', '[', "'code'", ',', "'ask_broker_id'", ',', "'ask_broker_name'", ',', "'ask_broker_pos'", ']', 'bid_frame_table', '=', 'pd', '.', 'DataFrame', '(', 'bid_content', ',', 'columns', '=', 'bid_list', ')', 'ask_frame_table', '=', 'pd', '.', 'DataFrame', '(', 'ask_content', ',', 'columns', '=', 'ask_list', ')', 'return', 'RET_OK', ',', 'stock_code', ',', '[', 'bid_frame_table', ',', 'ask_frame_table', ']'] | 在收到实时经纪数据推送后会回调到该函数，使用者需要在派生类中覆盖此方法
注意该回调是在独立子线程中
:param rsp_pb: 派生类中不需要直接处理该参数
:return: 成功时返回(RET_OK, stock_code, [bid_frame_table, ask_frame_table]), 相关frame table含义见 get_broker_queue_ 的返回值说明
失败时返回(RET_ERROR, ERR_MSG, None) | ['在收到实时经纪数据推送后会回调到该函数，使用者需要在派生类中覆盖此方法'] | train | https://github.com/FutunnOpen/futuquant/blob/1512b321845f92ec9c578ce2689aa4e8482669e4/futuquant/quote/quote_response_handler.py#L266-L291 |
1,735 | bitesofcode/projex | projex/cli.py | climethod.parser | def parser(self):
"""
Creates a parser for the method based on the documentation.
:return <OptionParser>
"""
usage = self.usage()
if self.__doc__:
usage += '\n' + nstr(self.__doc__)
parse = PARSER_CLASS(usage=usage)
shorts = {v: k for k, v in self.short_keys.items()}
for key, default in self.cmd_opts.items():
# default key, cannot be duplicated
if key == 'help':
continue
try:
short = '-' + shorts[key]
except KeyError:
short = ''
if default is True:
action = 'store_false'
elif default is False:
action = 'store_true'
else:
action = 'store'
# add the option
parse.add_option(short, '--%s' % key, action=action, default=default)
return parse | python | def parser(self):
"""
Creates a parser for the method based on the documentation.
:return <OptionParser>
"""
usage = self.usage()
if self.__doc__:
usage += '\n' + nstr(self.__doc__)
parse = PARSER_CLASS(usage=usage)
shorts = {v: k for k, v in self.short_keys.items()}
for key, default in self.cmd_opts.items():
# default key, cannot be duplicated
if key == 'help':
continue
try:
short = '-' + shorts[key]
except KeyError:
short = ''
if default is True:
action = 'store_false'
elif default is False:
action = 'store_true'
else:
action = 'store'
# add the option
parse.add_option(short, '--%s' % key, action=action, default=default)
return parse | ['def', 'parser', '(', 'self', ')', ':', 'usage', '=', 'self', '.', 'usage', '(', ')', 'if', 'self', '.', '__doc__', ':', 'usage', '+=', "'\\n'", '+', 'nstr', '(', 'self', '.', '__doc__', ')', 'parse', '=', 'PARSER_CLASS', '(', 'usage', '=', 'usage', ')', 'shorts', '=', '{', 'v', ':', 'k', 'for', 'k', ',', 'v', 'in', 'self', '.', 'short_keys', '.', 'items', '(', ')', '}', 'for', 'key', ',', 'default', 'in', 'self', '.', 'cmd_opts', '.', 'items', '(', ')', ':', '# default key, cannot be duplicated', 'if', 'key', '==', "'help'", ':', 'continue', 'try', ':', 'short', '=', "'-'", '+', 'shorts', '[', 'key', ']', 'except', 'KeyError', ':', 'short', '=', "''", 'if', 'default', 'is', 'True', ':', 'action', '=', "'store_false'", 'elif', 'default', 'is', 'False', ':', 'action', '=', "'store_true'", 'else', ':', 'action', '=', "'store'", '# add the option', 'parse', '.', 'add_option', '(', 'short', ',', "'--%s'", '%', 'key', ',', 'action', '=', 'action', ',', 'default', '=', 'default', ')', 'return', 'parse'] | Creates a parser for the method based on the documentation.
:return <OptionParser> | ['Creates', 'a', 'parser', 'for', 'the', 'method', 'based', 'on', 'the', 'documentation', '.', ':', 'return', '<OptionParser', '>'] | train | https://github.com/bitesofcode/projex/blob/d31743ec456a41428709968ab11a2cf6c6c76247/projex/cli.py#L101-L134 |
1,736 | thingful/hypercat-py | hypercat/hypercat.py | Hypercat.findByPath | def findByPath(self, rel, path):
"""Traverses children, building a path based on relation <rel>, until given path is found."""
if((path=="") or (path=="/")):
return(self)
(front,dummy,rest) = path.lstrip("/").partition("/")
for child in self.items:
if front in child.values(rel):
return child.findByPath(rel, rest)
return None | python | def findByPath(self, rel, path):
"""Traverses children, building a path based on relation <rel>, until given path is found."""
if((path=="") or (path=="/")):
return(self)
(front,dummy,rest) = path.lstrip("/").partition("/")
for child in self.items:
if front in child.values(rel):
return child.findByPath(rel, rest)
return None | ['def', 'findByPath', '(', 'self', ',', 'rel', ',', 'path', ')', ':', 'if', '(', '(', 'path', '==', '""', ')', 'or', '(', 'path', '==', '"/"', ')', ')', ':', 'return', '(', 'self', ')', '(', 'front', ',', 'dummy', ',', 'rest', ')', '=', 'path', '.', 'lstrip', '(', '"/"', ')', '.', 'partition', '(', '"/"', ')', 'for', 'child', 'in', 'self', '.', 'items', ':', 'if', 'front', 'in', 'child', '.', 'values', '(', 'rel', ')', ':', 'return', 'child', '.', 'findByPath', '(', 'rel', ',', 'rest', ')', 'return', 'None'] | Traverses children, building a path based on relation <rel>, until given path is found. | ['Traverses', 'children', 'building', 'a', 'path', 'based', 'on', 'relation', '<rel', '>', 'until', 'given', 'path', 'is', 'found', '.'] | train | https://github.com/thingful/hypercat-py/blob/db24ef66ec92d74fbea90afbeadc3a268f18f6e3/hypercat/hypercat.py#L161-L169 |
1,737 | nerdvegas/rez | src/rez/vendor/sortedcontainers/sortedset.py | SortedSet.symmetric_difference | def symmetric_difference(self, that):
"""
Return a new set with elements in either *self* or *that* but not both.
"""
diff = self._set.symmetric_difference(that)
return self._fromset(diff, key=self._key) | python | def symmetric_difference(self, that):
"""
Return a new set with elements in either *self* or *that* but not both.
"""
diff = self._set.symmetric_difference(that)
return self._fromset(diff, key=self._key) | ['def', 'symmetric_difference', '(', 'self', ',', 'that', ')', ':', 'diff', '=', 'self', '.', '_set', '.', 'symmetric_difference', '(', 'that', ')', 'return', 'self', '.', '_fromset', '(', 'diff', ',', 'key', '=', 'self', '.', '_key', ')'] | Return a new set with elements in either *self* or *that* but not both. | ['Return', 'a', 'new', 'set', 'with', 'elements', 'in', 'either', '*', 'self', '*', 'or', '*', 'that', '*', 'but', 'not', 'both', '.'] | train | https://github.com/nerdvegas/rez/blob/1d3b846d53b5b5404edfe8ddb9083f9ceec8c5e7/src/rez/vendor/sortedcontainers/sortedset.py#L261-L266 |
1,738 | gmr/queries | queries/pool.py | PoolManager.remove_connection | def remove_connection(cls, pid, connection):
"""Remove a connection from the pool, closing it if is open.
:param str pid: The pool ID
:param connection: The connection to remove
:type connection: psycopg2.extensions.connection
:raises: ConnectionNotFoundError
"""
cls._ensure_pool_exists(pid)
cls._pools[pid].remove(connection) | python | def remove_connection(cls, pid, connection):
"""Remove a connection from the pool, closing it if is open.
:param str pid: The pool ID
:param connection: The connection to remove
:type connection: psycopg2.extensions.connection
:raises: ConnectionNotFoundError
"""
cls._ensure_pool_exists(pid)
cls._pools[pid].remove(connection) | ['def', 'remove_connection', '(', 'cls', ',', 'pid', ',', 'connection', ')', ':', 'cls', '.', '_ensure_pool_exists', '(', 'pid', ')', 'cls', '.', '_pools', '[', 'pid', ']', '.', 'remove', '(', 'connection', ')'] | Remove a connection from the pool, closing it if is open.
:param str pid: The pool ID
:param connection: The connection to remove
:type connection: psycopg2.extensions.connection
:raises: ConnectionNotFoundError | ['Remove', 'a', 'connection', 'from', 'the', 'pool', 'closing', 'it', 'if', 'is', 'open', '.'] | train | https://github.com/gmr/queries/blob/a68855013dc6aaf9ed7b6909a4701f8da8796a0a/queries/pool.py#L616-L626 |
1,739 | hazelcast/hazelcast-python-client | hazelcast/proxy/atomic_long.py | AtomicLong.compare_and_set | def compare_and_set(self, expected, updated):
"""
Atomically sets the value to the given updated value only if the current value == the expected value.
:param expected: (long), the expected value.
:param updated: (long), the new value.
:return: (bool), ``true`` if successful; or ``false`` if the actual value was not equal to the expected value.
"""
return self._encode_invoke(atomic_long_compare_and_set_codec, expected=expected,
updated=updated) | python | def compare_and_set(self, expected, updated):
"""
Atomically sets the value to the given updated value only if the current value == the expected value.
:param expected: (long), the expected value.
:param updated: (long), the new value.
:return: (bool), ``true`` if successful; or ``false`` if the actual value was not equal to the expected value.
"""
return self._encode_invoke(atomic_long_compare_and_set_codec, expected=expected,
updated=updated) | ['def', 'compare_and_set', '(', 'self', ',', 'expected', ',', 'updated', ')', ':', 'return', 'self', '.', '_encode_invoke', '(', 'atomic_long_compare_and_set_codec', ',', 'expected', '=', 'expected', ',', 'updated', '=', 'updated', ')'] | Atomically sets the value to the given updated value only if the current value == the expected value.
:param expected: (long), the expected value.
:param updated: (long), the new value.
:return: (bool), ``true`` if successful; or ``false`` if the actual value was not equal to the expected value. | ['Atomically', 'sets', 'the', 'value', 'to', 'the', 'given', 'updated', 'value', 'only', 'if', 'the', 'current', 'value', '==', 'the', 'expected', 'value', '.'] | train | https://github.com/hazelcast/hazelcast-python-client/blob/3f6639443c23d6d036aa343f8e094f052250d2c1/hazelcast/proxy/atomic_long.py#L60-L69 |
1,740 | kinegratii/borax | borax/calendars/lunardate.py | TermUtils.get_term_info | def get_term_info(year, month, day):
"""Parse solar term and stem-branch year/month/day from a solar date.
(sy, sm, sd) => (term, next_gz_month)
term for year 2101,:2101.1.5(初六) 小寒 2101.1.20(廿一) 大寒
"""
if year == 2101:
days = [5, 20]
else:
days = TermUtils.parse_term_days(year)
term_index1 = 2 * (month - 1)
term_index2 = 2 * (month - 1) + 1
day1 = days[term_index1]
day2 = days[term_index2]
if day == day1:
term_name = TERMS_CN[term_index1]
elif day == day2:
term_name = TERMS_CN[term_index2]
else:
term_name = None
next_gz_month = day >= day1
return term_name, next_gz_month | python | def get_term_info(year, month, day):
"""Parse solar term and stem-branch year/month/day from a solar date.
(sy, sm, sd) => (term, next_gz_month)
term for year 2101,:2101.1.5(初六) 小寒 2101.1.20(廿一) 大寒
"""
if year == 2101:
days = [5, 20]
else:
days = TermUtils.parse_term_days(year)
term_index1 = 2 * (month - 1)
term_index2 = 2 * (month - 1) + 1
day1 = days[term_index1]
day2 = days[term_index2]
if day == day1:
term_name = TERMS_CN[term_index1]
elif day == day2:
term_name = TERMS_CN[term_index2]
else:
term_name = None
next_gz_month = day >= day1
return term_name, next_gz_month | ['def', 'get_term_info', '(', 'year', ',', 'month', ',', 'day', ')', ':', 'if', 'year', '==', '2101', ':', 'days', '=', '[', '5', ',', '20', ']', 'else', ':', 'days', '=', 'TermUtils', '.', 'parse_term_days', '(', 'year', ')', 'term_index1', '=', '2', '*', '(', 'month', '-', '1', ')', 'term_index2', '=', '2', '*', '(', 'month', '-', '1', ')', '+', '1', 'day1', '=', 'days', '[', 'term_index1', ']', 'day2', '=', 'days', '[', 'term_index2', ']', 'if', 'day', '==', 'day1', ':', 'term_name', '=', 'TERMS_CN', '[', 'term_index1', ']', 'elif', 'day', '==', 'day2', ':', 'term_name', '=', 'TERMS_CN', '[', 'term_index2', ']', 'else', ':', 'term_name', '=', 'None', 'next_gz_month', '=', 'day', '>=', 'day1', 'return', 'term_name', ',', 'next_gz_month'] | Parse solar term and stem-branch year/month/day from a solar date.
(sy, sm, sd) => (term, next_gz_month)
term for year 2101,:2101.1.5(初六) 小寒 2101.1.20(廿一) 大寒 | ['Parse', 'solar', 'term', 'and', 'stem', '-', 'branch', 'year', '/', 'month', '/', 'day', 'from', 'a', 'solar', 'date', '.', '(', 'sy', 'sm', 'sd', ')', '=', '>', '(', 'term', 'next_gz_month', ')', 'term', 'for', 'year', '2101', ':', '2101', '.', '1', '.', '5', '(', '初六', ')', '小寒', '2101', '.', '1', '.', '20', '(', '廿一', ')', '大寒'] | train | https://github.com/kinegratii/borax/blob/921649f9277e3f657b6dea5a80e67de9ee5567f6/borax/calendars/lunardate.py#L288-L309 |
1,741 | leonidessaguisagjr/unicodeutil | unicodeutil/unicodeutil.py | UnicodeData.lookup_by_name | def lookup_by_name(self, name):
"""
Function for retrieving the UnicodeCharacter associated with a name. The name lookup uses the loose matching
rule UAX44-LM2 for loose matching. See the following for more info:
https://www.unicode.org/reports/tr44/#UAX44-LM2
For example:
ucd = UnicodeData()
ucd.lookup_by_name("LATIN SMALL LETTER SHARP S") -> UnicodeCharacter(name='LATIN SMALL LETTER SHARP S',...)
ucd.lookup_by_name("latin_small_letter_sharp_s") -> UnicodeCharacter(name='LATIN SMALL LETTER SHARP S',...)
:param name: Name of the character to look up.
:return: UnicodeCharacter instance with data associated with the character.
"""
try:
return self._name_database[_uax44lm2transform(name)]
except KeyError:
raise KeyError(u"Unknown character name: '{0}'!".format(name)) | python | def lookup_by_name(self, name):
"""
Function for retrieving the UnicodeCharacter associated with a name. The name lookup uses the loose matching
rule UAX44-LM2 for loose matching. See the following for more info:
https://www.unicode.org/reports/tr44/#UAX44-LM2
For example:
ucd = UnicodeData()
ucd.lookup_by_name("LATIN SMALL LETTER SHARP S") -> UnicodeCharacter(name='LATIN SMALL LETTER SHARP S',...)
ucd.lookup_by_name("latin_small_letter_sharp_s") -> UnicodeCharacter(name='LATIN SMALL LETTER SHARP S',...)
:param name: Name of the character to look up.
:return: UnicodeCharacter instance with data associated with the character.
"""
try:
return self._name_database[_uax44lm2transform(name)]
except KeyError:
raise KeyError(u"Unknown character name: '{0}'!".format(name)) | ['def', 'lookup_by_name', '(', 'self', ',', 'name', ')', ':', 'try', ':', 'return', 'self', '.', '_name_database', '[', '_uax44lm2transform', '(', 'name', ')', ']', 'except', 'KeyError', ':', 'raise', 'KeyError', '(', 'u"Unknown character name: \'{0}\'!"', '.', 'format', '(', 'name', ')', ')'] | Function for retrieving the UnicodeCharacter associated with a name. The name lookup uses the loose matching
rule UAX44-LM2 for loose matching. See the following for more info:
https://www.unicode.org/reports/tr44/#UAX44-LM2
For example:
ucd = UnicodeData()
ucd.lookup_by_name("LATIN SMALL LETTER SHARP S") -> UnicodeCharacter(name='LATIN SMALL LETTER SHARP S',...)
ucd.lookup_by_name("latin_small_letter_sharp_s") -> UnicodeCharacter(name='LATIN SMALL LETTER SHARP S',...)
:param name: Name of the character to look up.
:return: UnicodeCharacter instance with data associated with the character. | ['Function', 'for', 'retrieving', 'the', 'UnicodeCharacter', 'associated', 'with', 'a', 'name', '.', 'The', 'name', 'lookup', 'uses', 'the', 'loose', 'matching', 'rule', 'UAX44', '-', 'LM2', 'for', 'loose', 'matching', '.', 'See', 'the', 'following', 'for', 'more', 'info', ':'] | train | https://github.com/leonidessaguisagjr/unicodeutil/blob/c25c882cf9cb38c123df49fad365be67e5818928/unicodeutil/unicodeutil.py#L339-L359 |
1,742 | ethereum/eth-abi | eth_abi/decoding.py | ContextFramesBytesIO.push_frame | def push_frame(self, offset):
"""
Pushes a new contextual frame onto the stack with the given offset and a
return position at the current cursor position then seeks to the new
total offset.
"""
self._frames.append((offset, self.tell()))
self._total_offset += offset
self.seek_in_frame(0) | python | def push_frame(self, offset):
"""
Pushes a new contextual frame onto the stack with the given offset and a
return position at the current cursor position then seeks to the new
total offset.
"""
self._frames.append((offset, self.tell()))
self._total_offset += offset
self.seek_in_frame(0) | ['def', 'push_frame', '(', 'self', ',', 'offset', ')', ':', 'self', '.', '_frames', '.', 'append', '(', '(', 'offset', ',', 'self', '.', 'tell', '(', ')', ')', ')', 'self', '.', '_total_offset', '+=', 'offset', 'self', '.', 'seek_in_frame', '(', '0', ')'] | Pushes a new contextual frame onto the stack with the given offset and a
return position at the current cursor position then seeks to the new
total offset. | ['Pushes', 'a', 'new', 'contextual', 'frame', 'onto', 'the', 'stack', 'with', 'the', 'given', 'offset', 'and', 'a', 'return', 'position', 'at', 'the', 'current', 'cursor', 'position', 'then', 'seeks', 'to', 'the', 'new', 'total', 'offset', '.'] | train | https://github.com/ethereum/eth-abi/blob/0a5cab0bdeae30b77efa667379427581784f1707/eth_abi/decoding.py#L86-L95 |
1,743 | ARMmbed/mbed-cloud-sdk-python | src/mbed_cloud/_backends/mds/apis/endpoints_api.py | EndpointsApi.get_endpoint_resources | def get_endpoint_resources(self, device_id, **kwargs): # noqa: E501
"""List the resources on an endpoint # noqa: E501
The list of resources is cached by Device Management Connect, so this call does not create a message to the device. **Example usage:** curl -X GET https://api.us-east-1.mbedcloud.com/v2/endpoints/{device-id} -H 'authorization: Bearer {api-key}' # noqa: E501
This method makes a synchronous HTTP request by default. To make an
asynchronous HTTP request, please pass asynchronous=True
>>> thread = api.get_endpoint_resources(device_id, asynchronous=True)
>>> result = thread.get()
:param asynchronous bool
:param str device_id: A unique device ID for an endpoint. Note that the ID needs to be an exact match. You cannot use wildcards here. (required)
:return: list[Resource]
If the method is called asynchronously,
returns the request thread.
"""
kwargs['_return_http_data_only'] = True
if kwargs.get('asynchronous'):
return self.get_endpoint_resources_with_http_info(device_id, **kwargs) # noqa: E501
else:
(data) = self.get_endpoint_resources_with_http_info(device_id, **kwargs) # noqa: E501
return data | python | def get_endpoint_resources(self, device_id, **kwargs): # noqa: E501
"""List the resources on an endpoint # noqa: E501
The list of resources is cached by Device Management Connect, so this call does not create a message to the device. **Example usage:** curl -X GET https://api.us-east-1.mbedcloud.com/v2/endpoints/{device-id} -H 'authorization: Bearer {api-key}' # noqa: E501
This method makes a synchronous HTTP request by default. To make an
asynchronous HTTP request, please pass asynchronous=True
>>> thread = api.get_endpoint_resources(device_id, asynchronous=True)
>>> result = thread.get()
:param asynchronous bool
:param str device_id: A unique device ID for an endpoint. Note that the ID needs to be an exact match. You cannot use wildcards here. (required)
:return: list[Resource]
If the method is called asynchronously,
returns the request thread.
"""
kwargs['_return_http_data_only'] = True
if kwargs.get('asynchronous'):
return self.get_endpoint_resources_with_http_info(device_id, **kwargs) # noqa: E501
else:
(data) = self.get_endpoint_resources_with_http_info(device_id, **kwargs) # noqa: E501
return data | ['def', 'get_endpoint_resources', '(', 'self', ',', 'device_id', ',', '*', '*', 'kwargs', ')', ':', '# noqa: E501', 'kwargs', '[', "'_return_http_data_only'", ']', '=', 'True', 'if', 'kwargs', '.', 'get', '(', "'asynchronous'", ')', ':', 'return', 'self', '.', 'get_endpoint_resources_with_http_info', '(', 'device_id', ',', '*', '*', 'kwargs', ')', '# noqa: E501', 'else', ':', '(', 'data', ')', '=', 'self', '.', 'get_endpoint_resources_with_http_info', '(', 'device_id', ',', '*', '*', 'kwargs', ')', '# noqa: E501', 'return', 'data'] | List the resources on an endpoint # noqa: E501
The list of resources is cached by Device Management Connect, so this call does not create a message to the device. **Example usage:** curl -X GET https://api.us-east-1.mbedcloud.com/v2/endpoints/{device-id} -H 'authorization: Bearer {api-key}' # noqa: E501
This method makes a synchronous HTTP request by default. To make an
asynchronous HTTP request, please pass asynchronous=True
>>> thread = api.get_endpoint_resources(device_id, asynchronous=True)
>>> result = thread.get()
:param asynchronous bool
:param str device_id: A unique device ID for an endpoint. Note that the ID needs to be an exact match. You cannot use wildcards here. (required)
:return: list[Resource]
If the method is called asynchronously,
returns the request thread. | ['List', 'the', 'resources', 'on', 'an', 'endpoint', '#', 'noqa', ':', 'E501'] | train | https://github.com/ARMmbed/mbed-cloud-sdk-python/blob/c0af86fb2cdd4dc7ed26f236139241067d293509/src/mbed_cloud/_backends/mds/apis/endpoints_api.py#L127-L147 |
1,744 | linkedin/luminol | src/luminol/modules/time_series.py | TimeSeries.max | def max(self, default=None):
"""
Calculate the maximum value over the time series.
:param default: Value to return as a default should the calculation not be possible.
:return: Float representing the maximum value or `None`.
"""
return numpy.asscalar(numpy.max(self.values)) if self.values else default | python | def max(self, default=None):
"""
Calculate the maximum value over the time series.
:param default: Value to return as a default should the calculation not be possible.
:return: Float representing the maximum value or `None`.
"""
return numpy.asscalar(numpy.max(self.values)) if self.values else default | ['def', 'max', '(', 'self', ',', 'default', '=', 'None', ')', ':', 'return', 'numpy', '.', 'asscalar', '(', 'numpy', '.', 'max', '(', 'self', '.', 'values', ')', ')', 'if', 'self', '.', 'values', 'else', 'default'] | Calculate the maximum value over the time series.
:param default: Value to return as a default should the calculation not be possible.
:return: Float representing the maximum value or `None`. | ['Calculate', 'the', 'maximum', 'value', 'over', 'the', 'time', 'series', '.'] | train | https://github.com/linkedin/luminol/blob/42e4ab969b774ff98f902d064cb041556017f635/src/luminol/modules/time_series.py#L330-L337 |
1,745 | abakan-zz/napi | napi/functions.py | neval | def neval(expression, globals=None, locals=None, **kwargs):
"""Evaluate *expression* using *globals* and *locals* dictionaries as
*global* and *local* namespace. *expression* is transformed using
:class:`.NapiTransformer`."""
try:
import __builtin__ as builtins
except ImportError:
import builtins
from ast import parse
from ast import fix_missing_locations as fml
try:
transformer = kwargs['transformer']
except KeyError:
from napi.transformers import NapiTransformer as transformer
#try:
node = parse(expression, '<string>', 'eval')
#except ImportError:
# builtins.eval(expression)
#else:
if globals is None:
globals = builtins.globals()
if locals is None:
locals = {}
trans = transformer(globals=globals, locals=locals, **kwargs)
trans.visit(node)
code = compile(fml(node), '<string>', 'eval')
return builtins.eval(code, globals, locals) | python | def neval(expression, globals=None, locals=None, **kwargs):
"""Evaluate *expression* using *globals* and *locals* dictionaries as
*global* and *local* namespace. *expression* is transformed using
:class:`.NapiTransformer`."""
try:
import __builtin__ as builtins
except ImportError:
import builtins
from ast import parse
from ast import fix_missing_locations as fml
try:
transformer = kwargs['transformer']
except KeyError:
from napi.transformers import NapiTransformer as transformer
#try:
node = parse(expression, '<string>', 'eval')
#except ImportError:
# builtins.eval(expression)
#else:
if globals is None:
globals = builtins.globals()
if locals is None:
locals = {}
trans = transformer(globals=globals, locals=locals, **kwargs)
trans.visit(node)
code = compile(fml(node), '<string>', 'eval')
return builtins.eval(code, globals, locals) | ['def', 'neval', '(', 'expression', ',', 'globals', '=', 'None', ',', 'locals', '=', 'None', ',', '*', '*', 'kwargs', ')', ':', 'try', ':', 'import', '__builtin__', 'as', 'builtins', 'except', 'ImportError', ':', 'import', 'builtins', 'from', 'ast', 'import', 'parse', 'from', 'ast', 'import', 'fix_missing_locations', 'as', 'fml', 'try', ':', 'transformer', '=', 'kwargs', '[', "'transformer'", ']', 'except', 'KeyError', ':', 'from', 'napi', '.', 'transformers', 'import', 'NapiTransformer', 'as', 'transformer', '#try:', 'node', '=', 'parse', '(', 'expression', ',', "'<string>'", ',', "'eval'", ')', '#except ImportError:', '# builtins.eval(expression)', '#else:', 'if', 'globals', 'is', 'None', ':', 'globals', '=', 'builtins', '.', 'globals', '(', ')', 'if', 'locals', 'is', 'None', ':', 'locals', '=', '{', '}', 'trans', '=', 'transformer', '(', 'globals', '=', 'globals', ',', 'locals', '=', 'locals', ',', '*', '*', 'kwargs', ')', 'trans', '.', 'visit', '(', 'node', ')', 'code', '=', 'compile', '(', 'fml', '(', 'node', ')', ',', "'<string>'", ',', "'eval'", ')', 'return', 'builtins', '.', 'eval', '(', 'code', ',', 'globals', ',', 'locals', ')'] | Evaluate *expression* using *globals* and *locals* dictionaries as
*global* and *local* namespace. *expression* is transformed using
:class:`.NapiTransformer`. | ['Evaluate', '*', 'expression', '*', 'using', '*', 'globals', '*', 'and', '*', 'locals', '*', 'dictionaries', 'as', '*', 'global', '*', 'and', '*', 'local', '*', 'namespace', '.', '*', 'expression', '*', 'is', 'transformed', 'using', ':', 'class', ':', '.', 'NapiTransformer', '.'] | train | https://github.com/abakan-zz/napi/blob/314da65bd78e2c716b7efb6deaf3816d8f38f7fd/napi/functions.py#L3-L33 |
1,746 | google/mobly | mobly/controllers/monsoon.py | MonsoonData._validate_data | def _validate_data(self):
"""Verifies that the data points contained in the class are valid.
"""
msg = "Error! Expected {} timestamps, found {}.".format(
len(self._data_points), len(self._timestamps))
if len(self._data_points) != len(self._timestamps):
raise MonsoonError(msg) | python | def _validate_data(self):
"""Verifies that the data points contained in the class are valid.
"""
msg = "Error! Expected {} timestamps, found {}.".format(
len(self._data_points), len(self._timestamps))
if len(self._data_points) != len(self._timestamps):
raise MonsoonError(msg) | ['def', '_validate_data', '(', 'self', ')', ':', 'msg', '=', '"Error! Expected {} timestamps, found {}."', '.', 'format', '(', 'len', '(', 'self', '.', '_data_points', ')', ',', 'len', '(', 'self', '.', '_timestamps', ')', ')', 'if', 'len', '(', 'self', '.', '_data_points', ')', '!=', 'len', '(', 'self', '.', '_timestamps', ')', ':', 'raise', 'MonsoonError', '(', 'msg', ')'] | Verifies that the data points contained in the class are valid. | ['Verifies', 'that', 'the', 'data', 'points', 'contained', 'in', 'the', 'class', 'are', 'valid', '.'] | train | https://github.com/google/mobly/blob/38ba2cf7d29a20e6a2fca1718eecb337df38db26/mobly/controllers/monsoon.py#L580-L586 |
1,747 | CityOfZion/neo-python | neo/VM/ExecutionEngine.py | ExecutionEngine.write_log | def write_log(self, message):
"""
Write a line to the VM instruction log file.
Args:
message (str): string message to write to file.
"""
if self._is_write_log and self.log_file and not self.log_file.closed:
self.log_file.write(message + '\n') | python | def write_log(self, message):
"""
Write a line to the VM instruction log file.
Args:
message (str): string message to write to file.
"""
if self._is_write_log and self.log_file and not self.log_file.closed:
self.log_file.write(message + '\n') | ['def', 'write_log', '(', 'self', ',', 'message', ')', ':', 'if', 'self', '.', '_is_write_log', 'and', 'self', '.', 'log_file', 'and', 'not', 'self', '.', 'log_file', '.', 'closed', ':', 'self', '.', 'log_file', '.', 'write', '(', 'message', '+', "'\\n'", ')'] | Write a line to the VM instruction log file.
Args:
message (str): string message to write to file. | ['Write', 'a', 'line', 'to', 'the', 'VM', 'instruction', 'log', 'file', '.'] | train | https://github.com/CityOfZion/neo-python/blob/fe90f62e123d720d4281c79af0598d9df9e776fb/neo/VM/ExecutionEngine.py#L47-L55 |
1,748 | IrvKalb/pygwidgets | pygwidgets/pygwidgets.py | PygWidgetsCheckBox.draw | def draw(self):
"""Draws the checkbox."""
if not self.visible:
return
# Blit the current checkbox's image.
if self.isEnabled:
if self.mouseIsDown and self.lastMouseDownOverButton and self.mouseOverButton:
if self.value:
self.window.blit(self.surfaceOnDown, self.loc)
else:
self.window.blit(self.surfaceOffDown, self.loc)
else:
if self.value:
self.window.blit(self.surfaceOn, self.loc)
else:
self.window.blit(self.surfaceOff, self.loc)
else:
if self.value:
self.window.blit(self.surfaceOnDisabled, self.loc)
else:
self.window.blit(self.surfaceOffDisabled, self.loc) | python | def draw(self):
"""Draws the checkbox."""
if not self.visible:
return
# Blit the current checkbox's image.
if self.isEnabled:
if self.mouseIsDown and self.lastMouseDownOverButton and self.mouseOverButton:
if self.value:
self.window.blit(self.surfaceOnDown, self.loc)
else:
self.window.blit(self.surfaceOffDown, self.loc)
else:
if self.value:
self.window.blit(self.surfaceOn, self.loc)
else:
self.window.blit(self.surfaceOff, self.loc)
else:
if self.value:
self.window.blit(self.surfaceOnDisabled, self.loc)
else:
self.window.blit(self.surfaceOffDisabled, self.loc) | ['def', 'draw', '(', 'self', ')', ':', 'if', 'not', 'self', '.', 'visible', ':', 'return', "# Blit the current checkbox's image.\r", 'if', 'self', '.', 'isEnabled', ':', 'if', 'self', '.', 'mouseIsDown', 'and', 'self', '.', 'lastMouseDownOverButton', 'and', 'self', '.', 'mouseOverButton', ':', 'if', 'self', '.', 'value', ':', 'self', '.', 'window', '.', 'blit', '(', 'self', '.', 'surfaceOnDown', ',', 'self', '.', 'loc', ')', 'else', ':', 'self', '.', 'window', '.', 'blit', '(', 'self', '.', 'surfaceOffDown', ',', 'self', '.', 'loc', ')', 'else', ':', 'if', 'self', '.', 'value', ':', 'self', '.', 'window', '.', 'blit', '(', 'self', '.', 'surfaceOn', ',', 'self', '.', 'loc', ')', 'else', ':', 'self', '.', 'window', '.', 'blit', '(', 'self', '.', 'surfaceOff', ',', 'self', '.', 'loc', ')', 'else', ':', 'if', 'self', '.', 'value', ':', 'self', '.', 'window', '.', 'blit', '(', 'self', '.', 'surfaceOnDisabled', ',', 'self', '.', 'loc', ')', 'else', ':', 'self', '.', 'window', '.', 'blit', '(', 'self', '.', 'surfaceOffDisabled', ',', 'self', '.', 'loc', ')'] | Draws the checkbox. | ['Draws', 'the', 'checkbox', '.'] | train | https://github.com/IrvKalb/pygwidgets/blob/a830d8885d4d209e471cb53816277d30db56273c/pygwidgets/pygwidgets.py#L839-L863 |
1,749 | aiortc/aioice | aioice/candidate.py | candidate_priority | def candidate_priority(candidate_component, candidate_type, local_pref=65535):
"""
See RFC 5245 - 4.1.2.1. Recommended Formula
"""
if candidate_type == 'host':
type_pref = 126
elif candidate_type == 'prflx':
type_pref = 110
elif candidate_type == 'srflx':
type_pref = 100
else:
type_pref = 0
return (1 << 24) * type_pref + \
(1 << 8) * local_pref + \
(256 - candidate_component) | python | def candidate_priority(candidate_component, candidate_type, local_pref=65535):
"""
See RFC 5245 - 4.1.2.1. Recommended Formula
"""
if candidate_type == 'host':
type_pref = 126
elif candidate_type == 'prflx':
type_pref = 110
elif candidate_type == 'srflx':
type_pref = 100
else:
type_pref = 0
return (1 << 24) * type_pref + \
(1 << 8) * local_pref + \
(256 - candidate_component) | ['def', 'candidate_priority', '(', 'candidate_component', ',', 'candidate_type', ',', 'local_pref', '=', '65535', ')', ':', 'if', 'candidate_type', '==', "'host'", ':', 'type_pref', '=', '126', 'elif', 'candidate_type', '==', "'prflx'", ':', 'type_pref', '=', '110', 'elif', 'candidate_type', '==', "'srflx'", ':', 'type_pref', '=', '100', 'else', ':', 'type_pref', '=', '0', 'return', '(', '1', '<<', '24', ')', '*', 'type_pref', '+', '(', '1', '<<', '8', ')', '*', 'local_pref', '+', '(', '256', '-', 'candidate_component', ')'] | See RFC 5245 - 4.1.2.1. Recommended Formula | ['See', 'RFC', '5245', '-', '4', '.', '1', '.', '2', '.', '1', '.', 'Recommended', 'Formula'] | train | https://github.com/aiortc/aioice/blob/a04d810d94ec2d00eca9ce01eacca74b3b086616/aioice/candidate.py#L13-L28 |
1,750 | brocade/pynos | pynos/versions/ver_6/ver_6_0_1/yang/brocade_xstp_ext.py | brocade_xstp_ext.get_stp_mst_detail_output_msti_port_designated_bridge_id | def get_stp_mst_detail_output_msti_port_designated_bridge_id(self, **kwargs):
"""Auto Generated Code
"""
config = ET.Element("config")
get_stp_mst_detail = ET.Element("get_stp_mst_detail")
config = get_stp_mst_detail
output = ET.SubElement(get_stp_mst_detail, "output")
msti = ET.SubElement(output, "msti")
instance_id_key = ET.SubElement(msti, "instance-id")
instance_id_key.text = kwargs.pop('instance_id')
port = ET.SubElement(msti, "port")
designated_bridge_id = ET.SubElement(port, "designated-bridge-id")
designated_bridge_id.text = kwargs.pop('designated_bridge_id')
callback = kwargs.pop('callback', self._callback)
return callback(config) | python | def get_stp_mst_detail_output_msti_port_designated_bridge_id(self, **kwargs):
"""Auto Generated Code
"""
config = ET.Element("config")
get_stp_mst_detail = ET.Element("get_stp_mst_detail")
config = get_stp_mst_detail
output = ET.SubElement(get_stp_mst_detail, "output")
msti = ET.SubElement(output, "msti")
instance_id_key = ET.SubElement(msti, "instance-id")
instance_id_key.text = kwargs.pop('instance_id')
port = ET.SubElement(msti, "port")
designated_bridge_id = ET.SubElement(port, "designated-bridge-id")
designated_bridge_id.text = kwargs.pop('designated_bridge_id')
callback = kwargs.pop('callback', self._callback)
return callback(config) | ['def', 'get_stp_mst_detail_output_msti_port_designated_bridge_id', '(', 'self', ',', '*', '*', 'kwargs', ')', ':', 'config', '=', 'ET', '.', 'Element', '(', '"config"', ')', 'get_stp_mst_detail', '=', 'ET', '.', 'Element', '(', '"get_stp_mst_detail"', ')', 'config', '=', 'get_stp_mst_detail', 'output', '=', 'ET', '.', 'SubElement', '(', 'get_stp_mst_detail', ',', '"output"', ')', 'msti', '=', 'ET', '.', 'SubElement', '(', 'output', ',', '"msti"', ')', 'instance_id_key', '=', 'ET', '.', 'SubElement', '(', 'msti', ',', '"instance-id"', ')', 'instance_id_key', '.', 'text', '=', 'kwargs', '.', 'pop', '(', "'instance_id'", ')', 'port', '=', 'ET', '.', 'SubElement', '(', 'msti', ',', '"port"', ')', 'designated_bridge_id', '=', 'ET', '.', 'SubElement', '(', 'port', ',', '"designated-bridge-id"', ')', 'designated_bridge_id', '.', 'text', '=', 'kwargs', '.', 'pop', '(', "'designated_bridge_id'", ')', 'callback', '=', 'kwargs', '.', 'pop', '(', "'callback'", ',', 'self', '.', '_callback', ')', 'return', 'callback', '(', 'config', ')'] | Auto Generated Code | ['Auto', 'Generated', 'Code'] | train | https://github.com/brocade/pynos/blob/bd8a34e98f322de3fc06750827d8bbc3a0c00380/pynos/versions/ver_6/ver_6_0_1/yang/brocade_xstp_ext.py#L4742-L4757 |
1,751 | pycontribs/pyrax | samples/cloud_monitoring/util.py | option_chooser | def option_chooser(options, attr=None):
"""Given an iterable, enumerate its contents for a user to choose from.
If the optional `attr` is not None, that attribute in each iterated
object will be printed.
This function will exit the program if the user chooses the escape option.
"""
for num, option in enumerate(options):
if attr:
print("%s: %s" % (num, getattr(option, attr)))
else:
print("%s: %s" % (num, option))
# Add an escape option
escape_opt = num + 1
print("%s: I want to exit!" % escape_opt)
choice = six.moves.input("Selection: ")
try:
ichoice = int(choice)
if ichoice > escape_opt:
raise ValueError
except ValueError:
print("Valid entries are the numbers 0-%s. Received '%s'." % (escape_opt,
choice))
sys.exit()
if ichoice == escape_opt:
print("Bye!")
sys.exit()
return ichoice | python | def option_chooser(options, attr=None):
"""Given an iterable, enumerate its contents for a user to choose from.
If the optional `attr` is not None, that attribute in each iterated
object will be printed.
This function will exit the program if the user chooses the escape option.
"""
for num, option in enumerate(options):
if attr:
print("%s: %s" % (num, getattr(option, attr)))
else:
print("%s: %s" % (num, option))
# Add an escape option
escape_opt = num + 1
print("%s: I want to exit!" % escape_opt)
choice = six.moves.input("Selection: ")
try:
ichoice = int(choice)
if ichoice > escape_opt:
raise ValueError
except ValueError:
print("Valid entries are the numbers 0-%s. Received '%s'." % (escape_opt,
choice))
sys.exit()
if ichoice == escape_opt:
print("Bye!")
sys.exit()
return ichoice | ['def', 'option_chooser', '(', 'options', ',', 'attr', '=', 'None', ')', ':', 'for', 'num', ',', 'option', 'in', 'enumerate', '(', 'options', ')', ':', 'if', 'attr', ':', 'print', '(', '"%s: %s"', '%', '(', 'num', ',', 'getattr', '(', 'option', ',', 'attr', ')', ')', ')', 'else', ':', 'print', '(', '"%s: %s"', '%', '(', 'num', ',', 'option', ')', ')', '# Add an escape option', 'escape_opt', '=', 'num', '+', '1', 'print', '(', '"%s: I want to exit!"', '%', 'escape_opt', ')', 'choice', '=', 'six', '.', 'moves', '.', 'input', '(', '"Selection: "', ')', 'try', ':', 'ichoice', '=', 'int', '(', 'choice', ')', 'if', 'ichoice', '>', 'escape_opt', ':', 'raise', 'ValueError', 'except', 'ValueError', ':', 'print', '(', '"Valid entries are the numbers 0-%s. Received \'%s\'."', '%', '(', 'escape_opt', ',', 'choice', ')', ')', 'sys', '.', 'exit', '(', ')', 'if', 'ichoice', '==', 'escape_opt', ':', 'print', '(', '"Bye!"', ')', 'sys', '.', 'exit', '(', ')', 'return', 'ichoice'] | Given an iterable, enumerate its contents for a user to choose from.
If the optional `attr` is not None, that attribute in each iterated
object will be printed.
This function will exit the program if the user chooses the escape option. | ['Given', 'an', 'iterable', 'enumerate', 'its', 'contents', 'for', 'a', 'user', 'to', 'choose', 'from', '.', 'If', 'the', 'optional', 'attr', 'is', 'not', 'None', 'that', 'attribute', 'in', 'each', 'iterated', 'object', 'will', 'be', 'printed', '.'] | train | https://github.com/pycontribs/pyrax/blob/9ddfd5064b3a292d7337906f3b2d5dce95b50b99/samples/cloud_monitoring/util.py#L24-L53 |
1,752 | onecodex/onecodex | onecodex/taxonomy.py | TaxonomyMixin.tree_prune_rank | def tree_prune_rank(self, tree, rank="species"):
"""Takes a TreeNode tree and prunes off any tips not at the specified rank and backwards up
until all of the tips are at the specified rank.
Parameters
----------
tree : `skbio.tree.TreeNode`
The root node of the tree to perform this operation on.
rank : {kingdom', 'phylum', 'class', 'order', 'family', 'genus', 'species'}, optional
Analysis will be restricted to abundances of taxa at the specified level.
Returns
-------
`skbio.tree.TreeNode`, the root of the tree where all tips are at the given rank, and all
tips have a path back to the root node.
Examples
--------
tree_prune_rank(tree, 'species') will remove all subspecies/strain nodes and return a tree
containing all genus-level nodes and higher.
"""
if rank is None:
return tree.copy()
tree = tree.copy()
for node in tree.postorder():
if node.rank == rank:
node._above_rank = True
elif any([getattr(n, "_above_rank", False) for n in node.children]):
node._above_rank = True
else:
node._above_rank = False
tree.remove_deleted(lambda n: not getattr(n, "_above_rank", False))
return tree | python | def tree_prune_rank(self, tree, rank="species"):
"""Takes a TreeNode tree and prunes off any tips not at the specified rank and backwards up
until all of the tips are at the specified rank.
Parameters
----------
tree : `skbio.tree.TreeNode`
The root node of the tree to perform this operation on.
rank : {kingdom', 'phylum', 'class', 'order', 'family', 'genus', 'species'}, optional
Analysis will be restricted to abundances of taxa at the specified level.
Returns
-------
`skbio.tree.TreeNode`, the root of the tree where all tips are at the given rank, and all
tips have a path back to the root node.
Examples
--------
tree_prune_rank(tree, 'species') will remove all subspecies/strain nodes and return a tree
containing all genus-level nodes and higher.
"""
if rank is None:
return tree.copy()
tree = tree.copy()
for node in tree.postorder():
if node.rank == rank:
node._above_rank = True
elif any([getattr(n, "_above_rank", False) for n in node.children]):
node._above_rank = True
else:
node._above_rank = False
tree.remove_deleted(lambda n: not getattr(n, "_above_rank", False))
return tree | ['def', 'tree_prune_rank', '(', 'self', ',', 'tree', ',', 'rank', '=', '"species"', ')', ':', 'if', 'rank', 'is', 'None', ':', 'return', 'tree', '.', 'copy', '(', ')', 'tree', '=', 'tree', '.', 'copy', '(', ')', 'for', 'node', 'in', 'tree', '.', 'postorder', '(', ')', ':', 'if', 'node', '.', 'rank', '==', 'rank', ':', 'node', '.', '_above_rank', '=', 'True', 'elif', 'any', '(', '[', 'getattr', '(', 'n', ',', '"_above_rank"', ',', 'False', ')', 'for', 'n', 'in', 'node', '.', 'children', ']', ')', ':', 'node', '.', '_above_rank', '=', 'True', 'else', ':', 'node', '.', '_above_rank', '=', 'False', 'tree', '.', 'remove_deleted', '(', 'lambda', 'n', ':', 'not', 'getattr', '(', 'n', ',', '"_above_rank"', ',', 'False', ')', ')', 'return', 'tree'] | Takes a TreeNode tree and prunes off any tips not at the specified rank and backwards up
until all of the tips are at the specified rank.
Parameters
----------
tree : `skbio.tree.TreeNode`
The root node of the tree to perform this operation on.
rank : {kingdom', 'phylum', 'class', 'order', 'family', 'genus', 'species'}, optional
Analysis will be restricted to abundances of taxa at the specified level.
Returns
-------
`skbio.tree.TreeNode`, the root of the tree where all tips are at the given rank, and all
tips have a path back to the root node.
Examples
--------
tree_prune_rank(tree, 'species') will remove all subspecies/strain nodes and return a tree
containing all genus-level nodes and higher. | ['Takes', 'a', 'TreeNode', 'tree', 'and', 'prunes', 'off', 'any', 'tips', 'not', 'at', 'the', 'specified', 'rank', 'and', 'backwards', 'up', 'until', 'all', 'of', 'the', 'tips', 'are', 'at', 'the', 'specified', 'rank', '.'] | train | https://github.com/onecodex/onecodex/blob/326a0a1af140e3a57ccf31c3c9c5e17a5775c13d/onecodex/taxonomy.py#L70-L106 |
1,753 | timothydmorton/isochrones | isochrones/observation.py | Observation.observe | def observe(self, stars, unc, ic=None):
"""Creates and adds appropriate synthetic Source objects for list of stars (max 2 for now)
"""
if ic is None:
ic = get_ichrone('mist')
if len(stars) > 2:
raise NotImplementedError('No support yet for > 2 synthetic stars')
mags = [ic(*s.pars)['{}_mag'.format(self.band)].values[0] for s in stars]
d = stars[0].distance(stars[1])
if d < self.resolution:
mag = addmags(*mags) + unc*np.random.randn()
sources = [Source(mag, unc, stars[0].separation, stars[0].pa,
relative=self.relative)]
else:
mags = np.array([m + unc*np.random.randn() for m in mags])
if self.relative:
mags -= mags.min()
sources = [Source(m, unc, s.separation, s.pa, relative=self.relative)
for m,s in zip(mags, stars)]
for s in sources:
self.add_source(s)
self._set_reference() | python | def observe(self, stars, unc, ic=None):
"""Creates and adds appropriate synthetic Source objects for list of stars (max 2 for now)
"""
if ic is None:
ic = get_ichrone('mist')
if len(stars) > 2:
raise NotImplementedError('No support yet for > 2 synthetic stars')
mags = [ic(*s.pars)['{}_mag'.format(self.band)].values[0] for s in stars]
d = stars[0].distance(stars[1])
if d < self.resolution:
mag = addmags(*mags) + unc*np.random.randn()
sources = [Source(mag, unc, stars[0].separation, stars[0].pa,
relative=self.relative)]
else:
mags = np.array([m + unc*np.random.randn() for m in mags])
if self.relative:
mags -= mags.min()
sources = [Source(m, unc, s.separation, s.pa, relative=self.relative)
for m,s in zip(mags, stars)]
for s in sources:
self.add_source(s)
self._set_reference() | ['def', 'observe', '(', 'self', ',', 'stars', ',', 'unc', ',', 'ic', '=', 'None', ')', ':', 'if', 'ic', 'is', 'None', ':', 'ic', '=', 'get_ichrone', '(', "'mist'", ')', 'if', 'len', '(', 'stars', ')', '>', '2', ':', 'raise', 'NotImplementedError', '(', "'No support yet for > 2 synthetic stars'", ')', 'mags', '=', '[', 'ic', '(', '*', 's', '.', 'pars', ')', '[', "'{}_mag'", '.', 'format', '(', 'self', '.', 'band', ')', ']', '.', 'values', '[', '0', ']', 'for', 's', 'in', 'stars', ']', 'd', '=', 'stars', '[', '0', ']', '.', 'distance', '(', 'stars', '[', '1', ']', ')', 'if', 'd', '<', 'self', '.', 'resolution', ':', 'mag', '=', 'addmags', '(', '*', 'mags', ')', '+', 'unc', '*', 'np', '.', 'random', '.', 'randn', '(', ')', 'sources', '=', '[', 'Source', '(', 'mag', ',', 'unc', ',', 'stars', '[', '0', ']', '.', 'separation', ',', 'stars', '[', '0', ']', '.', 'pa', ',', 'relative', '=', 'self', '.', 'relative', ')', ']', 'else', ':', 'mags', '=', 'np', '.', 'array', '(', '[', 'm', '+', 'unc', '*', 'np', '.', 'random', '.', 'randn', '(', ')', 'for', 'm', 'in', 'mags', ']', ')', 'if', 'self', '.', 'relative', ':', 'mags', '-=', 'mags', '.', 'min', '(', ')', 'sources', '=', '[', 'Source', '(', 'm', ',', 'unc', ',', 's', '.', 'separation', ',', 's', '.', 'pa', ',', 'relative', '=', 'self', '.', 'relative', ')', 'for', 'm', ',', 's', 'in', 'zip', '(', 'mags', ',', 'stars', ')', ']', 'for', 's', 'in', 'sources', ':', 'self', '.', 'add_source', '(', 's', ')', 'self', '.', '_set_reference', '(', ')'] | Creates and adds appropriate synthetic Source objects for list of stars (max 2 for now) | ['Creates', 'and', 'adds', 'appropriate', 'synthetic', 'Source', 'objects', 'for', 'list', 'of', 'stars', '(', 'max', '2', 'for', 'now', ')'] | train | https://github.com/timothydmorton/isochrones/blob/d84495573044c66db2fd6b959fe69e370757ea14/isochrones/observation.py#L643-L670 |
1,754 | MillionIntegrals/vel | vel/api/train_phase.py | TrainPhase.restore | def restore(self, training_info: TrainingInfo, local_batch_idx: int, model: Model, hidden_state: dict):
"""
Restore learning from intermediate state.
"""
pass | python | def restore(self, training_info: TrainingInfo, local_batch_idx: int, model: Model, hidden_state: dict):
"""
Restore learning from intermediate state.
"""
pass | ['def', 'restore', '(', 'self', ',', 'training_info', ':', 'TrainingInfo', ',', 'local_batch_idx', ':', 'int', ',', 'model', ':', 'Model', ',', 'hidden_state', ':', 'dict', ')', ':', 'pass'] | Restore learning from intermediate state. | ['Restore', 'learning', 'from', 'intermediate', 'state', '.'] | train | https://github.com/MillionIntegrals/vel/blob/e0726e1f63742b728966ccae0c8b825ea0ba491a/vel/api/train_phase.py#L18-L22 |
1,755 | NaPs/Kolekto | kolekto/commands/stats.py | format_top | def format_top(counter, top=3):
""" Format a top.
"""
items = islice(reversed(sorted(counter.iteritems(), key=lambda x: x[1])), 0, top)
return u'; '.join(u'{g} ({nb})'.format(g=g, nb=nb) for g, nb in items) | python | def format_top(counter, top=3):
""" Format a top.
"""
items = islice(reversed(sorted(counter.iteritems(), key=lambda x: x[1])), 0, top)
return u'; '.join(u'{g} ({nb})'.format(g=g, nb=nb) for g, nb in items) | ['def', 'format_top', '(', 'counter', ',', 'top', '=', '3', ')', ':', 'items', '=', 'islice', '(', 'reversed', '(', 'sorted', '(', 'counter', '.', 'iteritems', '(', ')', ',', 'key', '=', 'lambda', 'x', ':', 'x', '[', '1', ']', ')', ')', ',', '0', ',', 'top', ')', 'return', "u'; '", '.', 'join', '(', "u'{g} ({nb})'", '.', 'format', '(', 'g', '=', 'g', ',', 'nb', '=', 'nb', ')', 'for', 'g', ',', 'nb', 'in', 'items', ')'] | Format a top. | ['Format', 'a', 'top', '.'] | train | https://github.com/NaPs/Kolekto/blob/29c5469da8782780a06bf9a76c59414bb6fd8fe3/kolekto/commands/stats.py#L34-L38 |
1,756 | pyblish/pyblish-qml | pyblish_qml/models.py | ProxyModel._set_rules | def _set_rules(self, group, rules):
"""Implementation detail"""
group.clear()
for rule in rules:
self._add_rule(group, *rule)
self.invalidate() | python | def _set_rules(self, group, rules):
"""Implementation detail"""
group.clear()
for rule in rules:
self._add_rule(group, *rule)
self.invalidate() | ['def', '_set_rules', '(', 'self', ',', 'group', ',', 'rules', ')', ':', 'group', '.', 'clear', '(', ')', 'for', 'rule', 'in', 'rules', ':', 'self', '.', '_add_rule', '(', 'group', ',', '*', 'rule', ')', 'self', '.', 'invalidate', '(', ')'] | Implementation detail | ['Implementation', 'detail'] | train | https://github.com/pyblish/pyblish-qml/blob/6095d18b2ec0afd0409a9b1a17e53b0658887283/pyblish_qml/models.py#L842-L849 |
1,757 | saltstack/salt | salt/modules/openbsdpkg.py | install | def install(name=None, pkgs=None, sources=None, **kwargs):
'''
Install the passed package
Return a dict containing the new package names and versions::
{'<package>': {'old': '<old-version>',
'new': '<new-version>'}}
CLI Example, Install one package:
.. code-block:: bash
salt '*' pkg.install <package name>
CLI Example, Install more than one package:
.. code-block:: bash
salt '*' pkg.install pkgs='["<package name>", "<package name>"]'
CLI Example, Install more than one package from a alternate source (e.g.
salt file-server, HTTP, FTP, local filesystem):
.. code-block:: bash
salt '*' pkg.install sources='[{"<pkg name>": "salt://pkgs/<pkg filename>"}]'
'''
try:
pkg_params, pkg_type = __salt__['pkg_resource.parse_targets'](
name, pkgs, sources, **kwargs
)
except MinionError as exc:
raise CommandExecutionError(exc)
if not pkg_params:
return {}
old = list_pkgs()
errors = []
for pkg in pkg_params:
# A special case for OpenBSD package "branches" is also required in
# salt/states/pkg.py
if pkg_type == 'repository':
stem, branch = (pkg.split('%') + [''])[:2]
base, flavor = (stem.split('--') + [''])[:2]
pkg = '{0}--{1}%{2}'.format(base, flavor, branch)
cmd = 'pkg_add -x -I {0}'.format(pkg)
out = __salt__['cmd.run_all'](
cmd,
python_shell=False,
output_loglevel='trace'
)
if out['retcode'] != 0 and out['stderr']:
errors.append(out['stderr'])
__context__.pop('pkg.list_pkgs', None)
new = list_pkgs()
ret = salt.utils.data.compare_dicts(old, new)
if errors:
raise CommandExecutionError(
'Problem encountered installing package(s)',
info={'errors': errors, 'changes': ret}
)
return ret | python | def install(name=None, pkgs=None, sources=None, **kwargs):
'''
Install the passed package
Return a dict containing the new package names and versions::
{'<package>': {'old': '<old-version>',
'new': '<new-version>'}}
CLI Example, Install one package:
.. code-block:: bash
salt '*' pkg.install <package name>
CLI Example, Install more than one package:
.. code-block:: bash
salt '*' pkg.install pkgs='["<package name>", "<package name>"]'
CLI Example, Install more than one package from a alternate source (e.g.
salt file-server, HTTP, FTP, local filesystem):
.. code-block:: bash
salt '*' pkg.install sources='[{"<pkg name>": "salt://pkgs/<pkg filename>"}]'
'''
try:
pkg_params, pkg_type = __salt__['pkg_resource.parse_targets'](
name, pkgs, sources, **kwargs
)
except MinionError as exc:
raise CommandExecutionError(exc)
if not pkg_params:
return {}
old = list_pkgs()
errors = []
for pkg in pkg_params:
# A special case for OpenBSD package "branches" is also required in
# salt/states/pkg.py
if pkg_type == 'repository':
stem, branch = (pkg.split('%') + [''])[:2]
base, flavor = (stem.split('--') + [''])[:2]
pkg = '{0}--{1}%{2}'.format(base, flavor, branch)
cmd = 'pkg_add -x -I {0}'.format(pkg)
out = __salt__['cmd.run_all'](
cmd,
python_shell=False,
output_loglevel='trace'
)
if out['retcode'] != 0 and out['stderr']:
errors.append(out['stderr'])
__context__.pop('pkg.list_pkgs', None)
new = list_pkgs()
ret = salt.utils.data.compare_dicts(old, new)
if errors:
raise CommandExecutionError(
'Problem encountered installing package(s)',
info={'errors': errors, 'changes': ret}
)
return ret | ['def', 'install', '(', 'name', '=', 'None', ',', 'pkgs', '=', 'None', ',', 'sources', '=', 'None', ',', '*', '*', 'kwargs', ')', ':', 'try', ':', 'pkg_params', ',', 'pkg_type', '=', '__salt__', '[', "'pkg_resource.parse_targets'", ']', '(', 'name', ',', 'pkgs', ',', 'sources', ',', '*', '*', 'kwargs', ')', 'except', 'MinionError', 'as', 'exc', ':', 'raise', 'CommandExecutionError', '(', 'exc', ')', 'if', 'not', 'pkg_params', ':', 'return', '{', '}', 'old', '=', 'list_pkgs', '(', ')', 'errors', '=', '[', ']', 'for', 'pkg', 'in', 'pkg_params', ':', '# A special case for OpenBSD package "branches" is also required in', '# salt/states/pkg.py', 'if', 'pkg_type', '==', "'repository'", ':', 'stem', ',', 'branch', '=', '(', 'pkg', '.', 'split', '(', "'%'", ')', '+', '[', "''", ']', ')', '[', ':', '2', ']', 'base', ',', 'flavor', '=', '(', 'stem', '.', 'split', '(', "'--'", ')', '+', '[', "''", ']', ')', '[', ':', '2', ']', 'pkg', '=', "'{0}--{1}%{2}'", '.', 'format', '(', 'base', ',', 'flavor', ',', 'branch', ')', 'cmd', '=', "'pkg_add -x -I {0}'", '.', 'format', '(', 'pkg', ')', 'out', '=', '__salt__', '[', "'cmd.run_all'", ']', '(', 'cmd', ',', 'python_shell', '=', 'False', ',', 'output_loglevel', '=', "'trace'", ')', 'if', 'out', '[', "'retcode'", ']', '!=', '0', 'and', 'out', '[', "'stderr'", ']', ':', 'errors', '.', 'append', '(', 'out', '[', "'stderr'", ']', ')', '__context__', '.', 'pop', '(', "'pkg.list_pkgs'", ',', 'None', ')', 'new', '=', 'list_pkgs', '(', ')', 'ret', '=', 'salt', '.', 'utils', '.', 'data', '.', 'compare_dicts', '(', 'old', ',', 'new', ')', 'if', 'errors', ':', 'raise', 'CommandExecutionError', '(', "'Problem encountered installing package(s)'", ',', 'info', '=', '{', "'errors'", ':', 'errors', ',', "'changes'", ':', 'ret', '}', ')', 'return', 'ret'] | Install the passed package
Return a dict containing the new package names and versions::
{'<package>': {'old': '<old-version>',
'new': '<new-version>'}}
CLI Example, Install one package:
.. code-block:: bash
salt '*' pkg.install <package name>
CLI Example, Install more than one package:
.. code-block:: bash
salt '*' pkg.install pkgs='["<package name>", "<package name>"]'
CLI Example, Install more than one package from a alternate source (e.g.
salt file-server, HTTP, FTP, local filesystem):
.. code-block:: bash
salt '*' pkg.install sources='[{"<pkg name>": "salt://pkgs/<pkg filename>"}]' | ['Install', 'the', 'passed', 'package'] | train | https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/modules/openbsdpkg.py#L184-L250 |
1,758 | apple/turicreate | src/external/coremltools_wrap/coremltools/coremltools/models/neural_network/printer.py | summarize_neural_network_spec | def summarize_neural_network_spec(mlmodel_spec):
""" Summarize network into the following structure.
Args:
mlmodel_spec : mlmodel spec
Returns:
inputs : list[(str, str)] - a list of two tuple (name, descriptor) for each input blob.
outputs : list[(str, str)] - a list of two tuple (name, descriptor) for each output blob
layers : list[(str, list[str], list[str], list[(str, str)])] - a list of layers represented by
layer name, input blobs, output blobs, a list of (parameter name, content)
"""
inputs = [(blob.name, _get_feature_description_summary(blob)) for blob in mlmodel_spec.description.input]
outputs = [(blob.name, _get_feature_description_summary(blob)) for blob in mlmodel_spec.description.output]
nn = None
if mlmodel_spec.HasField('neuralNetwork'):
nn = mlmodel_spec.neuralNetwork
elif mlmodel_spec.HasField('neuralNetworkClassifier'):
nn = mlmodel_spec.neuralNetworkClassifier
elif mlmodel_spec.HasField('neuralNetworkRegressor'):
nn = mlmodel_spec.neuralNetworkRegressor
layers = [_summarize_network_layer_info(layer) for layer in nn.layers] if nn != None else None
return (inputs, outputs, layers) | python | def summarize_neural_network_spec(mlmodel_spec):
""" Summarize network into the following structure.
Args:
mlmodel_spec : mlmodel spec
Returns:
inputs : list[(str, str)] - a list of two tuple (name, descriptor) for each input blob.
outputs : list[(str, str)] - a list of two tuple (name, descriptor) for each output blob
layers : list[(str, list[str], list[str], list[(str, str)])] - a list of layers represented by
layer name, input blobs, output blobs, a list of (parameter name, content)
"""
inputs = [(blob.name, _get_feature_description_summary(blob)) for blob in mlmodel_spec.description.input]
outputs = [(blob.name, _get_feature_description_summary(blob)) for blob in mlmodel_spec.description.output]
nn = None
if mlmodel_spec.HasField('neuralNetwork'):
nn = mlmodel_spec.neuralNetwork
elif mlmodel_spec.HasField('neuralNetworkClassifier'):
nn = mlmodel_spec.neuralNetworkClassifier
elif mlmodel_spec.HasField('neuralNetworkRegressor'):
nn = mlmodel_spec.neuralNetworkRegressor
layers = [_summarize_network_layer_info(layer) for layer in nn.layers] if nn != None else None
return (inputs, outputs, layers) | ['def', 'summarize_neural_network_spec', '(', 'mlmodel_spec', ')', ':', 'inputs', '=', '[', '(', 'blob', '.', 'name', ',', '_get_feature_description_summary', '(', 'blob', ')', ')', 'for', 'blob', 'in', 'mlmodel_spec', '.', 'description', '.', 'input', ']', 'outputs', '=', '[', '(', 'blob', '.', 'name', ',', '_get_feature_description_summary', '(', 'blob', ')', ')', 'for', 'blob', 'in', 'mlmodel_spec', '.', 'description', '.', 'output', ']', 'nn', '=', 'None', 'if', 'mlmodel_spec', '.', 'HasField', '(', "'neuralNetwork'", ')', ':', 'nn', '=', 'mlmodel_spec', '.', 'neuralNetwork', 'elif', 'mlmodel_spec', '.', 'HasField', '(', "'neuralNetworkClassifier'", ')', ':', 'nn', '=', 'mlmodel_spec', '.', 'neuralNetworkClassifier', 'elif', 'mlmodel_spec', '.', 'HasField', '(', "'neuralNetworkRegressor'", ')', ':', 'nn', '=', 'mlmodel_spec', '.', 'neuralNetworkRegressor', 'layers', '=', '[', '_summarize_network_layer_info', '(', 'layer', ')', 'for', 'layer', 'in', 'nn', '.', 'layers', ']', 'if', 'nn', '!=', 'None', 'else', 'None', 'return', '(', 'inputs', ',', 'outputs', ',', 'layers', ')'] | Summarize network into the following structure.
Args:
mlmodel_spec : mlmodel spec
Returns:
inputs : list[(str, str)] - a list of two tuple (name, descriptor) for each input blob.
outputs : list[(str, str)] - a list of two tuple (name, descriptor) for each output blob
layers : list[(str, list[str], list[str], list[(str, str)])] - a list of layers represented by
layer name, input blobs, output blobs, a list of (parameter name, content) | ['Summarize', 'network', 'into', 'the', 'following', 'structure', '.', 'Args', ':', 'mlmodel_spec', ':', 'mlmodel', 'spec', 'Returns', ':', 'inputs', ':', 'list', '[', '(', 'str', 'str', ')', ']', '-', 'a', 'list', 'of', 'two', 'tuple', '(', 'name', 'descriptor', ')', 'for', 'each', 'input', 'blob', '.', 'outputs', ':', 'list', '[', '(', 'str', 'str', ')', ']', '-', 'a', 'list', 'of', 'two', 'tuple', '(', 'name', 'descriptor', ')', 'for', 'each', 'output', 'blob', 'layers', ':', 'list', '[', '(', 'str', 'list', '[', 'str', ']', 'list', '[', 'str', ']', 'list', '[', '(', 'str', 'str', ')', ']', ')', ']', '-', 'a', 'list', 'of', 'layers', 'represented', 'by', 'layer', 'name', 'input', 'blobs', 'output', 'blobs', 'a', 'list', 'of', '(', 'parameter', 'name', 'content', ')'] | train | https://github.com/apple/turicreate/blob/74514c3f99e25b46f22c6e02977fe3da69221c2e/src/external/coremltools_wrap/coremltools/coremltools/models/neural_network/printer.py#L105-L127 |
1,759 | gwastro/pycbc | pycbc/inference/models/base_data.py | BaseDataModel.data | def data(self, data):
"""Store a copy of the data."""
self._data = {det: d.copy() for (det, d) in data.items()} | python | def data(self, data):
"""Store a copy of the data."""
self._data = {det: d.copy() for (det, d) in data.items()} | ['def', 'data', '(', 'self', ',', 'data', ')', ':', 'self', '.', '_data', '=', '{', 'det', ':', 'd', '.', 'copy', '(', ')', 'for', '(', 'det', ',', 'd', ')', 'in', 'data', '.', 'items', '(', ')', '}'] | Store a copy of the data. | ['Store', 'a', 'copy', 'of', 'the', 'data', '.'] | train | https://github.com/gwastro/pycbc/blob/7a64cdd104d263f1b6ea0b01e6841837d05a4cb3/pycbc/inference/models/base_data.py#L90-L92 |
1,760 | SoCo/SoCo | dev_tools/analyse_ws.py | AnalyzeWS.__to_browser | def __to_browser(self, message_no):
""" Write a single message to file and open the file in a
browser
"""
filename = self.__to_file(message_no)
try:
command = self.config.get('General', 'browser_command')
except (ConfigParser.NoOptionError, AttributeError):
print 'Incorrect or missing .ini file. See --help.'
sys.exit(5)
command = str(command).format(filename)
command_list = command.split(' ')
try:
subprocess.Popen(command_list, stdout=subprocess.PIPE,
stderr=subprocess.PIPE)
except OSError:
print 'Unable to execute the browsercommand:'
print command
print 'Exiting!'
sys.exit(21) | python | def __to_browser(self, message_no):
""" Write a single message to file and open the file in a
browser
"""
filename = self.__to_file(message_no)
try:
command = self.config.get('General', 'browser_command')
except (ConfigParser.NoOptionError, AttributeError):
print 'Incorrect or missing .ini file. See --help.'
sys.exit(5)
command = str(command).format(filename)
command_list = command.split(' ')
try:
subprocess.Popen(command_list, stdout=subprocess.PIPE,
stderr=subprocess.PIPE)
except OSError:
print 'Unable to execute the browsercommand:'
print command
print 'Exiting!'
sys.exit(21) | ['def', '__to_browser', '(', 'self', ',', 'message_no', ')', ':', 'filename', '=', 'self', '.', '__to_file', '(', 'message_no', ')', 'try', ':', 'command', '=', 'self', '.', 'config', '.', 'get', '(', "'General'", ',', "'browser_command'", ')', 'except', '(', 'ConfigParser', '.', 'NoOptionError', ',', 'AttributeError', ')', ':', 'print', "'Incorrect or missing .ini file. See --help.'", 'sys', '.', 'exit', '(', '5', ')', 'command', '=', 'str', '(', 'command', ')', '.', 'format', '(', 'filename', ')', 'command_list', '=', 'command', '.', 'split', '(', "' '", ')', 'try', ':', 'subprocess', '.', 'Popen', '(', 'command_list', ',', 'stdout', '=', 'subprocess', '.', 'PIPE', ',', 'stderr', '=', 'subprocess', '.', 'PIPE', ')', 'except', 'OSError', ':', 'print', "'Unable to execute the browsercommand:'", 'print', 'command', 'print', "'Exiting!'", 'sys', '.', 'exit', '(', '21', ')'] | Write a single message to file and open the file in a
browser | ['Write', 'a', 'single', 'message', 'to', 'file', 'and', 'open', 'the', 'file', 'in', 'a', 'browser'] | train | https://github.com/SoCo/SoCo/blob/671937e07d7973b78c0cbee153d4f3ad68ec48c6/dev_tools/analyse_ws.py#L209-L229 |
1,761 | ibis-project/ibis | ibis/mapd/client.py | MapDClient.load_data | def load_data(self, table_name, obj, database=None, **kwargs):
"""
Wraps the LOAD DATA DDL statement. Loads data into an MapD table by
physically moving data files.
Parameters
----------
table_name : string
obj: pandas.DataFrame or pyarrow.Table
database : string, default None (optional)
"""
_database = self.db_name
self.set_database(database)
self.con.load_table(table_name, obj, **kwargs)
self.set_database(_database) | python | def load_data(self, table_name, obj, database=None, **kwargs):
"""
Wraps the LOAD DATA DDL statement. Loads data into an MapD table by
physically moving data files.
Parameters
----------
table_name : string
obj: pandas.DataFrame or pyarrow.Table
database : string, default None (optional)
"""
_database = self.db_name
self.set_database(database)
self.con.load_table(table_name, obj, **kwargs)
self.set_database(_database) | ['def', 'load_data', '(', 'self', ',', 'table_name', ',', 'obj', ',', 'database', '=', 'None', ',', '*', '*', 'kwargs', ')', ':', '_database', '=', 'self', '.', 'db_name', 'self', '.', 'set_database', '(', 'database', ')', 'self', '.', 'con', '.', 'load_table', '(', 'table_name', ',', 'obj', ',', '*', '*', 'kwargs', ')', 'self', '.', 'set_database', '(', '_database', ')'] | Wraps the LOAD DATA DDL statement. Loads data into an MapD table by
physically moving data files.
Parameters
----------
table_name : string
obj: pandas.DataFrame or pyarrow.Table
database : string, default None (optional) | ['Wraps', 'the', 'LOAD', 'DATA', 'DDL', 'statement', '.', 'Loads', 'data', 'into', 'an', 'MapD', 'table', 'by', 'physically', 'moving', 'data', 'files', '.'] | train | https://github.com/ibis-project/ibis/blob/1e39a5fd9ef088b45c155e8a5f541767ee8ef2e7/ibis/mapd/client.py#L728-L742 |
1,762 | DarkEnergySurvey/ugali | ugali/utils/stats.py | sky | def sky(lon=None,lat=None,size=1):
"""
Outputs uniform points on sphere from:
[0 < lon < 360] & [-90 < lat < 90]
"""
if lon is None:
umin,umax = 0,1
else:
lon = np.asarray(lon)
lon = np.radians(lon + 360.*(lon<0))
if lon.size==1: umin=umax=lon/(2*np.pi)
elif lon.size==2: umin,umax=lon/(2*np.pi)
else: raise Exception('...')
if lat is None:
vmin,vmax = -1,1
else:
lat = np.asarray(lat)
lat = np.radians(90 - lat)
if lat.size==1: vmin=vmax=np.cos(lat)
elif lat.size==2: vmin,vmax=np.cos(lat)
else: raise Exception('...')
phi = 2*np.pi*np.random.uniform(umin,umax,size=size)
theta = np.arcsin(np.random.uniform(vmin,vmax,size=size))
return np.degrees(phi),np.degrees(theta) | python | def sky(lon=None,lat=None,size=1):
"""
Outputs uniform points on sphere from:
[0 < lon < 360] & [-90 < lat < 90]
"""
if lon is None:
umin,umax = 0,1
else:
lon = np.asarray(lon)
lon = np.radians(lon + 360.*(lon<0))
if lon.size==1: umin=umax=lon/(2*np.pi)
elif lon.size==2: umin,umax=lon/(2*np.pi)
else: raise Exception('...')
if lat is None:
vmin,vmax = -1,1
else:
lat = np.asarray(lat)
lat = np.radians(90 - lat)
if lat.size==1: vmin=vmax=np.cos(lat)
elif lat.size==2: vmin,vmax=np.cos(lat)
else: raise Exception('...')
phi = 2*np.pi*np.random.uniform(umin,umax,size=size)
theta = np.arcsin(np.random.uniform(vmin,vmax,size=size))
return np.degrees(phi),np.degrees(theta) | ['def', 'sky', '(', 'lon', '=', 'None', ',', 'lat', '=', 'None', ',', 'size', '=', '1', ')', ':', 'if', 'lon', 'is', 'None', ':', 'umin', ',', 'umax', '=', '0', ',', '1', 'else', ':', 'lon', '=', 'np', '.', 'asarray', '(', 'lon', ')', 'lon', '=', 'np', '.', 'radians', '(', 'lon', '+', '360.', '*', '(', 'lon', '<', '0', ')', ')', 'if', 'lon', '.', 'size', '==', '1', ':', 'umin', '=', 'umax', '=', 'lon', '/', '(', '2', '*', 'np', '.', 'pi', ')', 'elif', 'lon', '.', 'size', '==', '2', ':', 'umin', ',', 'umax', '=', 'lon', '/', '(', '2', '*', 'np', '.', 'pi', ')', 'else', ':', 'raise', 'Exception', '(', "'...'", ')', 'if', 'lat', 'is', 'None', ':', 'vmin', ',', 'vmax', '=', '-', '1', ',', '1', 'else', ':', 'lat', '=', 'np', '.', 'asarray', '(', 'lat', ')', 'lat', '=', 'np', '.', 'radians', '(', '90', '-', 'lat', ')', 'if', 'lat', '.', 'size', '==', '1', ':', 'vmin', '=', 'vmax', '=', 'np', '.', 'cos', '(', 'lat', ')', 'elif', 'lat', '.', 'size', '==', '2', ':', 'vmin', ',', 'vmax', '=', 'np', '.', 'cos', '(', 'lat', ')', 'else', ':', 'raise', 'Exception', '(', "'...'", ')', 'phi', '=', '2', '*', 'np', '.', 'pi', '*', 'np', '.', 'random', '.', 'uniform', '(', 'umin', ',', 'umax', ',', 'size', '=', 'size', ')', 'theta', '=', 'np', '.', 'arcsin', '(', 'np', '.', 'random', '.', 'uniform', '(', 'vmin', ',', 'vmax', ',', 'size', '=', 'size', ')', ')', 'return', 'np', '.', 'degrees', '(', 'phi', ')', ',', 'np', '.', 'degrees', '(', 'theta', ')'] | Outputs uniform points on sphere from:
[0 < lon < 360] & [-90 < lat < 90] | ['Outputs', 'uniform', 'points', 'on', 'sphere', 'from', ':', '[', '0', '<', 'lon', '<', '360', ']', '&', '[', '-', '90', '<', 'lat', '<', '90', ']'] | train | https://github.com/DarkEnergySurvey/ugali/blob/21e890b4117fc810afb6fb058e8055d564f03382/ugali/utils/stats.py#L131-L156 |
1,763 | pytries/DAWG-Python | dawg_python/wrapper.py | Dictionary.contains | def contains(self, key):
"Exact matching."
index = self.follow_bytes(key, self.ROOT)
if index is None:
return False
return self.has_value(index) | python | def contains(self, key):
"Exact matching."
index = self.follow_bytes(key, self.ROOT)
if index is None:
return False
return self.has_value(index) | ['def', 'contains', '(', 'self', ',', 'key', ')', ':', 'index', '=', 'self', '.', 'follow_bytes', '(', 'key', ',', 'self', '.', 'ROOT', ')', 'if', 'index', 'is', 'None', ':', 'return', 'False', 'return', 'self', '.', 'has_value', '(', 'index', ')'] | Exact matching. | ['Exact', 'matching', '.'] | train | https://github.com/pytries/DAWG-Python/blob/e56241ec919b78735ff79014bf18d7fd1f8e08b9/dawg_python/wrapper.py#L35-L40 |
1,764 | fabioz/PyDev.Debugger | third_party/pep8/pycodestyle.py | missing_whitespace_after_import_keyword | def missing_whitespace_after_import_keyword(logical_line):
r"""Multiple imports in form from x import (a, b, c) should have space
between import statement and parenthesised name list.
Okay: from foo import (bar, baz)
E275: from foo import(bar, baz)
E275: from importable.module import(bar, baz)
"""
line = logical_line
indicator = ' import('
if line.startswith('from '):
found = line.find(indicator)
if -1 < found:
pos = found + len(indicator) - 1
yield pos, "E275 missing whitespace after keyword" | python | def missing_whitespace_after_import_keyword(logical_line):
r"""Multiple imports in form from x import (a, b, c) should have space
between import statement and parenthesised name list.
Okay: from foo import (bar, baz)
E275: from foo import(bar, baz)
E275: from importable.module import(bar, baz)
"""
line = logical_line
indicator = ' import('
if line.startswith('from '):
found = line.find(indicator)
if -1 < found:
pos = found + len(indicator) - 1
yield pos, "E275 missing whitespace after keyword" | ['def', 'missing_whitespace_after_import_keyword', '(', 'logical_line', ')', ':', 'line', '=', 'logical_line', 'indicator', '=', "' import('", 'if', 'line', '.', 'startswith', '(', "'from '", ')', ':', 'found', '=', 'line', '.', 'find', '(', 'indicator', ')', 'if', '-', '1', '<', 'found', ':', 'pos', '=', 'found', '+', 'len', '(', 'indicator', ')', '-', '1', 'yield', 'pos', ',', '"E275 missing whitespace after keyword"'] | r"""Multiple imports in form from x import (a, b, c) should have space
between import statement and parenthesised name list.
Okay: from foo import (bar, baz)
E275: from foo import(bar, baz)
E275: from importable.module import(bar, baz) | ['r', 'Multiple', 'imports', 'in', 'form', 'from', 'x', 'import', '(', 'a', 'b', 'c', ')', 'should', 'have', 'space', 'between', 'import', 'statement', 'and', 'parenthesised', 'name', 'list', '.'] | train | https://github.com/fabioz/PyDev.Debugger/blob/ed9c4307662a5593b8a7f1f3389ecd0e79b8c503/third_party/pep8/pycodestyle.py#L371-L385 |
1,765 | alfredodeza/notario | notario/validators/types.py | dictionary | def dictionary(_object, *args):
"""
Validates a given input is of type dictionary.
Example usage::
data = {'a' : {'b': 1}}
schema = ('a', dictionary)
You can also use this as a decorator, as a way to check for the
input before it even hits a validator you may be writing.
.. note::
If the argument is a callable, the decorating behavior will be
triggered, otherwise it will act as a normal function.
"""
error_msg = 'not of type dictionary'
if is_callable(_object):
_validator = _object
@wraps(_validator)
def decorated(value):
ensure(isinstance(value, dict), error_msg)
return _validator(value)
return decorated
try:
ensure(isinstance(_object, dict), error_msg)
except AssertionError:
if args:
msg = 'did not pass validation against callable: dictionary'
raise Invalid('', msg=msg, reason=error_msg, *args)
raise | python | def dictionary(_object, *args):
"""
Validates a given input is of type dictionary.
Example usage::
data = {'a' : {'b': 1}}
schema = ('a', dictionary)
You can also use this as a decorator, as a way to check for the
input before it even hits a validator you may be writing.
.. note::
If the argument is a callable, the decorating behavior will be
triggered, otherwise it will act as a normal function.
"""
error_msg = 'not of type dictionary'
if is_callable(_object):
_validator = _object
@wraps(_validator)
def decorated(value):
ensure(isinstance(value, dict), error_msg)
return _validator(value)
return decorated
try:
ensure(isinstance(_object, dict), error_msg)
except AssertionError:
if args:
msg = 'did not pass validation against callable: dictionary'
raise Invalid('', msg=msg, reason=error_msg, *args)
raise | ['def', 'dictionary', '(', '_object', ',', '*', 'args', ')', ':', 'error_msg', '=', "'not of type dictionary'", 'if', 'is_callable', '(', '_object', ')', ':', '_validator', '=', '_object', '@', 'wraps', '(', '_validator', ')', 'def', 'decorated', '(', 'value', ')', ':', 'ensure', '(', 'isinstance', '(', 'value', ',', 'dict', ')', ',', 'error_msg', ')', 'return', '_validator', '(', 'value', ')', 'return', 'decorated', 'try', ':', 'ensure', '(', 'isinstance', '(', '_object', ',', 'dict', ')', ',', 'error_msg', ')', 'except', 'AssertionError', ':', 'if', 'args', ':', 'msg', '=', "'did not pass validation against callable: dictionary'", 'raise', 'Invalid', '(', "''", ',', 'msg', '=', 'msg', ',', 'reason', '=', 'error_msg', ',', '*', 'args', ')', 'raise'] | Validates a given input is of type dictionary.
Example usage::
data = {'a' : {'b': 1}}
schema = ('a', dictionary)
You can also use this as a decorator, as a way to check for the
input before it even hits a validator you may be writing.
.. note::
If the argument is a callable, the decorating behavior will be
triggered, otherwise it will act as a normal function. | ['Validates', 'a', 'given', 'input', 'is', 'of', 'type', 'dictionary', '.'] | train | https://github.com/alfredodeza/notario/blob/d5dc2edfcb75d9291ced3f2551f368c35dd31475/notario/validators/types.py#L66-L98 |
1,766 | JIC-CSB/jicimagelib | jicimagelib/image.py | Image.from_array | def from_array(cls, array, name=None, log_in_history=True):
"""Return :class:`jicimagelib.image.Image` instance from an array.
:param array: :class:`numpy.ndarray`
:param name: name of the image
:param log_in_history: whether or not to log the creation event
in the image's history
:returns: :class:`jicimagelib.image.Image`
"""
image = array.view(cls)
event = 'Created image from array'
if name:
event = '{} as {}'.format(event, name)
if log_in_history:
image.history.append(event)
return image | python | def from_array(cls, array, name=None, log_in_history=True):
"""Return :class:`jicimagelib.image.Image` instance from an array.
:param array: :class:`numpy.ndarray`
:param name: name of the image
:param log_in_history: whether or not to log the creation event
in the image's history
:returns: :class:`jicimagelib.image.Image`
"""
image = array.view(cls)
event = 'Created image from array'
if name:
event = '{} as {}'.format(event, name)
if log_in_history:
image.history.append(event)
return image | ['def', 'from_array', '(', 'cls', ',', 'array', ',', 'name', '=', 'None', ',', 'log_in_history', '=', 'True', ')', ':', 'image', '=', 'array', '.', 'view', '(', 'cls', ')', 'event', '=', "'Created image from array'", 'if', 'name', ':', 'event', '=', "'{} as {}'", '.', 'format', '(', 'event', ',', 'name', ')', 'if', 'log_in_history', ':', 'image', '.', 'history', '.', 'append', '(', 'event', ')', 'return', 'image'] | Return :class:`jicimagelib.image.Image` instance from an array.
:param array: :class:`numpy.ndarray`
:param name: name of the image
:param log_in_history: whether or not to log the creation event
in the image's history
:returns: :class:`jicimagelib.image.Image` | ['Return', ':', 'class', ':', 'jicimagelib', '.', 'image', '.', 'Image', 'instance', 'from', 'an', 'array', '.', ':', 'param', 'array', ':', ':', 'class', ':', 'numpy', '.', 'ndarray', ':', 'param', 'name', ':', 'name', 'of', 'the', 'image', ':', 'param', 'log_in_history', ':', 'whether', 'or', 'not', 'to', 'log', 'the', 'creation', 'event', 'in', 'the', 'image', 's', 'history', ':', 'returns', ':', ':', 'class', ':', 'jicimagelib', '.', 'image', '.', 'Image'] | train | https://github.com/JIC-CSB/jicimagelib/blob/fbd67accb2e6d55969c6d4ed7e8b4bb4ab65cd44/jicimagelib/image.py#L20-L35 |
1,767 | rytilahti/python-songpal | songpal/main.py | remove | async def remove(gc: GroupControl, slaves):
"""Remove speakers from group."""
click.echo("Removing from existing group: %s" % slaves)
click.echo(await gc.remove(slaves)) | python | async def remove(gc: GroupControl, slaves):
"""Remove speakers from group."""
click.echo("Removing from existing group: %s" % slaves)
click.echo(await gc.remove(slaves)) | ['async', 'def', 'remove', '(', 'gc', ':', 'GroupControl', ',', 'slaves', ')', ':', 'click', '.', 'echo', '(', '"Removing from existing group: %s"', '%', 'slaves', ')', 'click', '.', 'echo', '(', 'await', 'gc', '.', 'remove', '(', 'slaves', ')', ')'] | Remove speakers from group. | ['Remove', 'speakers', 'from', 'group', '.'] | train | https://github.com/rytilahti/python-songpal/blob/0443de6b3d960b9067a851d82261ca00e46b4618/songpal/main.py#L724-L727 |
1,768 | gkbrk/JustIRC | JustIRC.py | IRCConnection.connect | def connect(self, server, port=6667):
"""Connects to a given IRC server. After the connection is established, it calls
the on_connect event handler.
"""
self.socket.connect((server, port))
self.lines = self._read_lines()
for event_handler in list(self.on_connect):
event_handler(self) | python | def connect(self, server, port=6667):
"""Connects to a given IRC server. After the connection is established, it calls
the on_connect event handler.
"""
self.socket.connect((server, port))
self.lines = self._read_lines()
for event_handler in list(self.on_connect):
event_handler(self) | ['def', 'connect', '(', 'self', ',', 'server', ',', 'port', '=', '6667', ')', ':', 'self', '.', 'socket', '.', 'connect', '(', '(', 'server', ',', 'port', ')', ')', 'self', '.', 'lines', '=', 'self', '.', '_read_lines', '(', ')', 'for', 'event_handler', 'in', 'list', '(', 'self', '.', 'on_connect', ')', ':', 'event_handler', '(', 'self', ')'] | Connects to a given IRC server. After the connection is established, it calls
the on_connect event handler. | ['Connects', 'to', 'a', 'given', 'IRC', 'server', '.', 'After', 'the', 'connection', 'is', 'established', 'it', 'calls', 'the', 'on_connect', 'event', 'handler', '.'] | train | https://github.com/gkbrk/JustIRC/blob/135bc0a7b67d66b7b4cd13d62c46c7d9613d2163/JustIRC.py#L113-L121 |
1,769 | pdkit/pdkit | pdkit/finger_tapping_processor.py | FingerTappingProcessor.dysmetria_score | def dysmetria_score(self, data_frame):
"""
This method calculates accuracy of target taps in pixels
:param data_frame: the data frame
:type data_frame: pandas.DataFrame
:return ds: dysmetria score in pixels
:rtype ds: float
"""
tap_data = data_frame[data_frame.action_type == 0]
ds = np.mean(np.sqrt((tap_data.x - tap_data.x_target) ** 2 + (tap_data.y - tap_data.y_target) ** 2))
duration = math.ceil(data_frame.td[-1])
return ds, duration | python | def dysmetria_score(self, data_frame):
"""
This method calculates accuracy of target taps in pixels
:param data_frame: the data frame
:type data_frame: pandas.DataFrame
:return ds: dysmetria score in pixels
:rtype ds: float
"""
tap_data = data_frame[data_frame.action_type == 0]
ds = np.mean(np.sqrt((tap_data.x - tap_data.x_target) ** 2 + (tap_data.y - tap_data.y_target) ** 2))
duration = math.ceil(data_frame.td[-1])
return ds, duration | ['def', 'dysmetria_score', '(', 'self', ',', 'data_frame', ')', ':', 'tap_data', '=', 'data_frame', '[', 'data_frame', '.', 'action_type', '==', '0', ']', 'ds', '=', 'np', '.', 'mean', '(', 'np', '.', 'sqrt', '(', '(', 'tap_data', '.', 'x', '-', 'tap_data', '.', 'x_target', ')', '**', '2', '+', '(', 'tap_data', '.', 'y', '-', 'tap_data', '.', 'y_target', ')', '**', '2', ')', ')', 'duration', '=', 'math', '.', 'ceil', '(', 'data_frame', '.', 'td', '[', '-', '1', ']', ')', 'return', 'ds', ',', 'duration'] | This method calculates accuracy of target taps in pixels
:param data_frame: the data frame
:type data_frame: pandas.DataFrame
:return ds: dysmetria score in pixels
:rtype ds: float | ['This', 'method', 'calculates', 'accuracy', 'of', 'target', 'taps', 'in', 'pixels'] | train | https://github.com/pdkit/pdkit/blob/c7120263da2071bb139815fbdb56ca77b544f340/pdkit/finger_tapping_processor.py#L194-L207 |
1,770 | phodge/homely | homely/_cli.py | add | def add(repo_path, dest_path):
'''
Registers a git repository with homely so that it will run its `HOMELY.py`
script on each invocation of `homely update`. `homely add` also immediately
executes a `homely update` so that the dotfiles are installed straight
away. If the git repository is hosted online, a local clone will be created
first.
REPO_PATH
A path to a local git repository, or the URL for a git repository
hosted online. If REPO_PATH is a URL, then it should be in a format
accepted by `git clone`. If REPO_PATH is a URL, you may also specify
DEST_PATH.
DEST_PATH
If REPO_PATH is a URL, then the local clone will be created at
DEST_PATH. If DEST_PATH is omitted then the path to the local clone
will be automatically derived from REPO_PATH.
'''
mkcfgdir()
try:
repo = getrepohandler(repo_path)
except NotARepo as err:
echo("ERROR: {}: {}".format(ERR_NOT_A_REPO, err.repo_path))
sys.exit(1)
# if the repo isn't on disk yet, we'll need to make a local clone of it
if repo.isremote:
localrepo, needpull = addfromremote(repo, dest_path)
elif dest_path:
raise UsageError("DEST_PATH is only for repos hosted online")
else:
try:
repoid = repo.getrepoid()
except RepoHasNoCommitsError as err:
echo("ERROR: {}".format(ERR_NO_COMMITS))
sys.exit(1)
localrepo = RepoInfo(repo, repoid, None)
needpull = False
# if we don't have a local repo, then there is nothing more to do
if not localrepo:
return
# remember this new local repo
with saveconfig(RepoListConfig()) as cfg:
cfg.add_repo(localrepo)
success = run_update([localrepo], pullfirst=needpull, cancleanup=True)
if not success:
sys.exit(1) | python | def add(repo_path, dest_path):
'''
Registers a git repository with homely so that it will run its `HOMELY.py`
script on each invocation of `homely update`. `homely add` also immediately
executes a `homely update` so that the dotfiles are installed straight
away. If the git repository is hosted online, a local clone will be created
first.
REPO_PATH
A path to a local git repository, or the URL for a git repository
hosted online. If REPO_PATH is a URL, then it should be in a format
accepted by `git clone`. If REPO_PATH is a URL, you may also specify
DEST_PATH.
DEST_PATH
If REPO_PATH is a URL, then the local clone will be created at
DEST_PATH. If DEST_PATH is omitted then the path to the local clone
will be automatically derived from REPO_PATH.
'''
mkcfgdir()
try:
repo = getrepohandler(repo_path)
except NotARepo as err:
echo("ERROR: {}: {}".format(ERR_NOT_A_REPO, err.repo_path))
sys.exit(1)
# if the repo isn't on disk yet, we'll need to make a local clone of it
if repo.isremote:
localrepo, needpull = addfromremote(repo, dest_path)
elif dest_path:
raise UsageError("DEST_PATH is only for repos hosted online")
else:
try:
repoid = repo.getrepoid()
except RepoHasNoCommitsError as err:
echo("ERROR: {}".format(ERR_NO_COMMITS))
sys.exit(1)
localrepo = RepoInfo(repo, repoid, None)
needpull = False
# if we don't have a local repo, then there is nothing more to do
if not localrepo:
return
# remember this new local repo
with saveconfig(RepoListConfig()) as cfg:
cfg.add_repo(localrepo)
success = run_update([localrepo], pullfirst=needpull, cancleanup=True)
if not success:
sys.exit(1) | ['def', 'add', '(', 'repo_path', ',', 'dest_path', ')', ':', 'mkcfgdir', '(', ')', 'try', ':', 'repo', '=', 'getrepohandler', '(', 'repo_path', ')', 'except', 'NotARepo', 'as', 'err', ':', 'echo', '(', '"ERROR: {}: {}"', '.', 'format', '(', 'ERR_NOT_A_REPO', ',', 'err', '.', 'repo_path', ')', ')', 'sys', '.', 'exit', '(', '1', ')', "# if the repo isn't on disk yet, we'll need to make a local clone of it", 'if', 'repo', '.', 'isremote', ':', 'localrepo', ',', 'needpull', '=', 'addfromremote', '(', 'repo', ',', 'dest_path', ')', 'elif', 'dest_path', ':', 'raise', 'UsageError', '(', '"DEST_PATH is only for repos hosted online"', ')', 'else', ':', 'try', ':', 'repoid', '=', 'repo', '.', 'getrepoid', '(', ')', 'except', 'RepoHasNoCommitsError', 'as', 'err', ':', 'echo', '(', '"ERROR: {}"', '.', 'format', '(', 'ERR_NO_COMMITS', ')', ')', 'sys', '.', 'exit', '(', '1', ')', 'localrepo', '=', 'RepoInfo', '(', 'repo', ',', 'repoid', ',', 'None', ')', 'needpull', '=', 'False', "# if we don't have a local repo, then there is nothing more to do", 'if', 'not', 'localrepo', ':', 'return', '# remember this new local repo', 'with', 'saveconfig', '(', 'RepoListConfig', '(', ')', ')', 'as', 'cfg', ':', 'cfg', '.', 'add_repo', '(', 'localrepo', ')', 'success', '=', 'run_update', '(', '[', 'localrepo', ']', ',', 'pullfirst', '=', 'needpull', ',', 'cancleanup', '=', 'True', ')', 'if', 'not', 'success', ':', 'sys', '.', 'exit', '(', '1', ')'] | Registers a git repository with homely so that it will run its `HOMELY.py`
script on each invocation of `homely update`. `homely add` also immediately
executes a `homely update` so that the dotfiles are installed straight
away. If the git repository is hosted online, a local clone will be created
first.
REPO_PATH
A path to a local git repository, or the URL for a git repository
hosted online. If REPO_PATH is a URL, then it should be in a format
accepted by `git clone`. If REPO_PATH is a URL, you may also specify
DEST_PATH.
DEST_PATH
If REPO_PATH is a URL, then the local clone will be created at
DEST_PATH. If DEST_PATH is omitted then the path to the local clone
will be automatically derived from REPO_PATH. | ['Registers', 'a', 'git', 'repository', 'with', 'homely', 'so', 'that', 'it', 'will', 'run', 'its', 'HOMELY', '.', 'py', 'script', 'on', 'each', 'invocation', 'of', 'homely', 'update', '.', 'homely', 'add', 'also', 'immediately', 'executes', 'a', 'homely', 'update', 'so', 'that', 'the', 'dotfiles', 'are', 'installed', 'straight', 'away', '.', 'If', 'the', 'git', 'repository', 'is', 'hosted', 'online', 'a', 'local', 'clone', 'will', 'be', 'created', 'first', '.'] | train | https://github.com/phodge/homely/blob/98ddcf3e4f29b0749645817b4866baaea8376085/homely/_cli.py#L72-L120 |
1,771 | hydpy-dev/hydpy | hydpy/core/modeltools.py | ModelELS.reset_sum_fluxes | def reset_sum_fluxes(self):
"""Set the sum of the fluxes calculated so far to zero.
>>> from hydpy.models.test_v1 import *
>>> parameterstep()
>>> fluxes.fastaccess._q_sum = 5.
>>> model.reset_sum_fluxes()
>>> fluxes.fastaccess._q_sum
0.0
"""
fluxes = self.sequences.fluxes
for flux in fluxes.numerics:
if flux.NDIM == 0:
setattr(fluxes.fastaccess, '_%s_sum' % flux.name, 0.)
else:
getattr(fluxes.fastaccess, '_%s_sum' % flux.name)[:] = 0. | python | def reset_sum_fluxes(self):
"""Set the sum of the fluxes calculated so far to zero.
>>> from hydpy.models.test_v1 import *
>>> parameterstep()
>>> fluxes.fastaccess._q_sum = 5.
>>> model.reset_sum_fluxes()
>>> fluxes.fastaccess._q_sum
0.0
"""
fluxes = self.sequences.fluxes
for flux in fluxes.numerics:
if flux.NDIM == 0:
setattr(fluxes.fastaccess, '_%s_sum' % flux.name, 0.)
else:
getattr(fluxes.fastaccess, '_%s_sum' % flux.name)[:] = 0. | ['def', 'reset_sum_fluxes', '(', 'self', ')', ':', 'fluxes', '=', 'self', '.', 'sequences', '.', 'fluxes', 'for', 'flux', 'in', 'fluxes', '.', 'numerics', ':', 'if', 'flux', '.', 'NDIM', '==', '0', ':', 'setattr', '(', 'fluxes', '.', 'fastaccess', ',', "'_%s_sum'", '%', 'flux', '.', 'name', ',', '0.', ')', 'else', ':', 'getattr', '(', 'fluxes', '.', 'fastaccess', ',', "'_%s_sum'", '%', 'flux', '.', 'name', ')', '[', ':', ']', '=', '0.'] | Set the sum of the fluxes calculated so far to zero.
>>> from hydpy.models.test_v1 import *
>>> parameterstep()
>>> fluxes.fastaccess._q_sum = 5.
>>> model.reset_sum_fluxes()
>>> fluxes.fastaccess._q_sum
0.0 | ['Set', 'the', 'sum', 'of', 'the', 'fluxes', 'calculated', 'so', 'far', 'to', 'zero', '.'] | train | https://github.com/hydpy-dev/hydpy/blob/1bc6a82cf30786521d86b36e27900c6717d3348d/hydpy/core/modeltools.py#L693-L708 |
1,772 | MartinThoma/hwrt | bin/merge.py | merge | def merge(d1, d2):
"""Merge two raw datasets into one.
Parameters
----------
d1 : dict
d2 : dict
Returns
-------
dict
"""
if d1['formula_id2latex'] is None:
formula_id2latex = {}
else:
formula_id2latex = d1['formula_id2latex'].copy()
formula_id2latex.update(d2['formula_id2latex'])
handwriting_datasets = d1['handwriting_datasets']
for dataset in d2['handwriting_datasets']:
handwriting_datasets.append(dataset)
return {'formula_id2latex': formula_id2latex,
'handwriting_datasets': handwriting_datasets} | python | def merge(d1, d2):
"""Merge two raw datasets into one.
Parameters
----------
d1 : dict
d2 : dict
Returns
-------
dict
"""
if d1['formula_id2latex'] is None:
formula_id2latex = {}
else:
formula_id2latex = d1['formula_id2latex'].copy()
formula_id2latex.update(d2['formula_id2latex'])
handwriting_datasets = d1['handwriting_datasets']
for dataset in d2['handwriting_datasets']:
handwriting_datasets.append(dataset)
return {'formula_id2latex': formula_id2latex,
'handwriting_datasets': handwriting_datasets} | ['def', 'merge', '(', 'd1', ',', 'd2', ')', ':', 'if', 'd1', '[', "'formula_id2latex'", ']', 'is', 'None', ':', 'formula_id2latex', '=', '{', '}', 'else', ':', 'formula_id2latex', '=', 'd1', '[', "'formula_id2latex'", ']', '.', 'copy', '(', ')', 'formula_id2latex', '.', 'update', '(', 'd2', '[', "'formula_id2latex'", ']', ')', 'handwriting_datasets', '=', 'd1', '[', "'handwriting_datasets'", ']', 'for', 'dataset', 'in', 'd2', '[', "'handwriting_datasets'", ']', ':', 'handwriting_datasets', '.', 'append', '(', 'dataset', ')', 'return', '{', "'formula_id2latex'", ':', 'formula_id2latex', ',', "'handwriting_datasets'", ':', 'handwriting_datasets', '}'] | Merge two raw datasets into one.
Parameters
----------
d1 : dict
d2 : dict
Returns
-------
dict | ['Merge', 'two', 'raw', 'datasets', 'into', 'one', '.'] | train | https://github.com/MartinThoma/hwrt/blob/725c21a3d0f5a30b8492cbc184b3688ceb364e1c/bin/merge.py#L37-L58 |
1,773 | log2timeline/plaso | plaso/engine/engine.py | BaseEngine._StartProfiling | def _StartProfiling(self, configuration):
"""Starts profiling.
Args:
configuration (ProfilingConfiguration): profiling configuration.
"""
if not configuration:
return
if configuration.HaveProfileMemoryGuppy():
self._guppy_memory_profiler = profilers.GuppyMemoryProfiler(
self._name, configuration)
self._guppy_memory_profiler.Start()
if configuration.HaveProfileMemory():
self._memory_profiler = profilers.MemoryProfiler(
self._name, configuration)
self._memory_profiler.Start()
if configuration.HaveProfileProcessing():
identifier = '{0:s}-processing'.format(self._name)
self._processing_profiler = profilers.ProcessingProfiler(
identifier, configuration)
self._processing_profiler.Start()
if configuration.HaveProfileSerializers():
identifier = '{0:s}-serializers'.format(self._name)
self._serializers_profiler = profilers.SerializersProfiler(
identifier, configuration)
self._serializers_profiler.Start()
if configuration.HaveProfileStorage():
self._storage_profiler = profilers.StorageProfiler(
self._name, configuration)
self._storage_profiler.Start()
if configuration.HaveProfileTaskQueue():
self._task_queue_profiler = profilers.TaskQueueProfiler(
self._name, configuration)
self._task_queue_profiler.Start() | python | def _StartProfiling(self, configuration):
"""Starts profiling.
Args:
configuration (ProfilingConfiguration): profiling configuration.
"""
if not configuration:
return
if configuration.HaveProfileMemoryGuppy():
self._guppy_memory_profiler = profilers.GuppyMemoryProfiler(
self._name, configuration)
self._guppy_memory_profiler.Start()
if configuration.HaveProfileMemory():
self._memory_profiler = profilers.MemoryProfiler(
self._name, configuration)
self._memory_profiler.Start()
if configuration.HaveProfileProcessing():
identifier = '{0:s}-processing'.format(self._name)
self._processing_profiler = profilers.ProcessingProfiler(
identifier, configuration)
self._processing_profiler.Start()
if configuration.HaveProfileSerializers():
identifier = '{0:s}-serializers'.format(self._name)
self._serializers_profiler = profilers.SerializersProfiler(
identifier, configuration)
self._serializers_profiler.Start()
if configuration.HaveProfileStorage():
self._storage_profiler = profilers.StorageProfiler(
self._name, configuration)
self._storage_profiler.Start()
if configuration.HaveProfileTaskQueue():
self._task_queue_profiler = profilers.TaskQueueProfiler(
self._name, configuration)
self._task_queue_profiler.Start() | ['def', '_StartProfiling', '(', 'self', ',', 'configuration', ')', ':', 'if', 'not', 'configuration', ':', 'return', 'if', 'configuration', '.', 'HaveProfileMemoryGuppy', '(', ')', ':', 'self', '.', '_guppy_memory_profiler', '=', 'profilers', '.', 'GuppyMemoryProfiler', '(', 'self', '.', '_name', ',', 'configuration', ')', 'self', '.', '_guppy_memory_profiler', '.', 'Start', '(', ')', 'if', 'configuration', '.', 'HaveProfileMemory', '(', ')', ':', 'self', '.', '_memory_profiler', '=', 'profilers', '.', 'MemoryProfiler', '(', 'self', '.', '_name', ',', 'configuration', ')', 'self', '.', '_memory_profiler', '.', 'Start', '(', ')', 'if', 'configuration', '.', 'HaveProfileProcessing', '(', ')', ':', 'identifier', '=', "'{0:s}-processing'", '.', 'format', '(', 'self', '.', '_name', ')', 'self', '.', '_processing_profiler', '=', 'profilers', '.', 'ProcessingProfiler', '(', 'identifier', ',', 'configuration', ')', 'self', '.', '_processing_profiler', '.', 'Start', '(', ')', 'if', 'configuration', '.', 'HaveProfileSerializers', '(', ')', ':', 'identifier', '=', "'{0:s}-serializers'", '.', 'format', '(', 'self', '.', '_name', ')', 'self', '.', '_serializers_profiler', '=', 'profilers', '.', 'SerializersProfiler', '(', 'identifier', ',', 'configuration', ')', 'self', '.', '_serializers_profiler', '.', 'Start', '(', ')', 'if', 'configuration', '.', 'HaveProfileStorage', '(', ')', ':', 'self', '.', '_storage_profiler', '=', 'profilers', '.', 'StorageProfiler', '(', 'self', '.', '_name', ',', 'configuration', ')', 'self', '.', '_storage_profiler', '.', 'Start', '(', ')', 'if', 'configuration', '.', 'HaveProfileTaskQueue', '(', ')', ':', 'self', '.', '_task_queue_profiler', '=', 'profilers', '.', 'TaskQueueProfiler', '(', 'self', '.', '_name', ',', 'configuration', ')', 'self', '.', '_task_queue_profiler', '.', 'Start', '(', ')'] | Starts profiling.
Args:
configuration (ProfilingConfiguration): profiling configuration. | ['Starts', 'profiling', '.'] | train | https://github.com/log2timeline/plaso/blob/9c564698d2da3ffbe23607a3c54c0582ea18a6cc/plaso/engine/engine.py#L108-L147 |
1,774 | saltstack/salt | salt/utils/stringutils.py | get_context | def get_context(template, line, num_lines=5, marker=None):
'''
Returns debugging context around a line in a given string
Returns:: string
'''
template_lines = template.splitlines()
num_template_lines = len(template_lines)
# In test mode, a single line template would return a crazy line number like,
# 357. Do this sanity check and if the given line is obviously wrong, just
# return the entire template
if line > num_template_lines:
return template
context_start = max(0, line - num_lines - 1) # subt 1 for 0-based indexing
context_end = min(num_template_lines, line + num_lines)
error_line_in_context = line - context_start - 1 # subtr 1 for 0-based idx
buf = []
if context_start > 0:
buf.append('[...]')
error_line_in_context += 1
buf.extend(template_lines[context_start:context_end])
if context_end < num_template_lines:
buf.append('[...]')
if marker:
buf[error_line_in_context] += marker
return '---\n{0}\n---'.format('\n'.join(buf)) | python | def get_context(template, line, num_lines=5, marker=None):
'''
Returns debugging context around a line in a given string
Returns:: string
'''
template_lines = template.splitlines()
num_template_lines = len(template_lines)
# In test mode, a single line template would return a crazy line number like,
# 357. Do this sanity check and if the given line is obviously wrong, just
# return the entire template
if line > num_template_lines:
return template
context_start = max(0, line - num_lines - 1) # subt 1 for 0-based indexing
context_end = min(num_template_lines, line + num_lines)
error_line_in_context = line - context_start - 1 # subtr 1 for 0-based idx
buf = []
if context_start > 0:
buf.append('[...]')
error_line_in_context += 1
buf.extend(template_lines[context_start:context_end])
if context_end < num_template_lines:
buf.append('[...]')
if marker:
buf[error_line_in_context] += marker
return '---\n{0}\n---'.format('\n'.join(buf)) | ['def', 'get_context', '(', 'template', ',', 'line', ',', 'num_lines', '=', '5', ',', 'marker', '=', 'None', ')', ':', 'template_lines', '=', 'template', '.', 'splitlines', '(', ')', 'num_template_lines', '=', 'len', '(', 'template_lines', ')', '# In test mode, a single line template would return a crazy line number like,', '# 357. Do this sanity check and if the given line is obviously wrong, just', '# return the entire template', 'if', 'line', '>', 'num_template_lines', ':', 'return', 'template', 'context_start', '=', 'max', '(', '0', ',', 'line', '-', 'num_lines', '-', '1', ')', '# subt 1 for 0-based indexing', 'context_end', '=', 'min', '(', 'num_template_lines', ',', 'line', '+', 'num_lines', ')', 'error_line_in_context', '=', 'line', '-', 'context_start', '-', '1', '# subtr 1 for 0-based idx', 'buf', '=', '[', ']', 'if', 'context_start', '>', '0', ':', 'buf', '.', 'append', '(', "'[...]'", ')', 'error_line_in_context', '+=', '1', 'buf', '.', 'extend', '(', 'template_lines', '[', 'context_start', ':', 'context_end', ']', ')', 'if', 'context_end', '<', 'num_template_lines', ':', 'buf', '.', 'append', '(', "'[...]'", ')', 'if', 'marker', ':', 'buf', '[', 'error_line_in_context', ']', '+=', 'marker', 'return', "'---\\n{0}\\n---'", '.', 'format', '(', "'\\n'", '.', 'join', '(', 'buf', ')', ')'] | Returns debugging context around a line in a given string
Returns:: string | ['Returns', 'debugging', 'context', 'around', 'a', 'line', 'in', 'a', 'given', 'string'] | train | https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/utils/stringutils.py#L540-L572 |
1,775 | estnltk/estnltk | estnltk/text.py | Text.postags | def postags(self):
"""The list of word part-of-speech tags.
Ambiguous cases are separated with pipe character by default.
Use :py:meth:`~estnltk.text.Text.get_analysis_element` to specify custom separator for ambiguous entries.
"""
if not self.is_tagged(ANALYSIS):
self.tag_analysis()
return self.get_analysis_element(POSTAG) | python | def postags(self):
"""The list of word part-of-speech tags.
Ambiguous cases are separated with pipe character by default.
Use :py:meth:`~estnltk.text.Text.get_analysis_element` to specify custom separator for ambiguous entries.
"""
if not self.is_tagged(ANALYSIS):
self.tag_analysis()
return self.get_analysis_element(POSTAG) | ['def', 'postags', '(', 'self', ')', ':', 'if', 'not', 'self', '.', 'is_tagged', '(', 'ANALYSIS', ')', ':', 'self', '.', 'tag_analysis', '(', ')', 'return', 'self', '.', 'get_analysis_element', '(', 'POSTAG', ')'] | The list of word part-of-speech tags.
Ambiguous cases are separated with pipe character by default.
Use :py:meth:`~estnltk.text.Text.get_analysis_element` to specify custom separator for ambiguous entries. | ['The', 'list', 'of', 'word', 'part', '-', 'of', '-', 'speech', 'tags', '.'] | train | https://github.com/estnltk/estnltk/blob/28ae334a68a0673072febc318635f04da0dcc54a/estnltk/text.py#L672-L680 |
1,776 | gmr/tredis | tredis/strings.py | StringsMixin.mset | def mset(self, mapping):
"""Sets the given keys to their respective values.
:meth:`~tredis.RedisClient.mset` replaces existing values with new
values, just as regular :meth:`~tredis.RedisClient.set`. See
:meth:`~tredis.RedisClient.msetnx` if you don't want to overwrite
existing values.
:meth:`~tredis.RedisClient.mset` is atomic, so all given keys are set
at once. It is not possible for clients to see that some of the keys
were updated while others are unchanged.
.. versionadded:: 0.2.0
.. note:: **Time complexity**: ``O(N)`` where ``N`` is the number of
keys to set.
:param dict mapping: A mapping of key/value pairs to set
:rtype: bool
:raises: :exc:`~tredis.exceptions.RedisError`
"""
command = [b'MSET']
for key, value in mapping.items():
command += [key, value]
return self._execute(command, b'OK') | python | def mset(self, mapping):
"""Sets the given keys to their respective values.
:meth:`~tredis.RedisClient.mset` replaces existing values with new
values, just as regular :meth:`~tredis.RedisClient.set`. See
:meth:`~tredis.RedisClient.msetnx` if you don't want to overwrite
existing values.
:meth:`~tredis.RedisClient.mset` is atomic, so all given keys are set
at once. It is not possible for clients to see that some of the keys
were updated while others are unchanged.
.. versionadded:: 0.2.0
.. note:: **Time complexity**: ``O(N)`` where ``N`` is the number of
keys to set.
:param dict mapping: A mapping of key/value pairs to set
:rtype: bool
:raises: :exc:`~tredis.exceptions.RedisError`
"""
command = [b'MSET']
for key, value in mapping.items():
command += [key, value]
return self._execute(command, b'OK') | ['def', 'mset', '(', 'self', ',', 'mapping', ')', ':', 'command', '=', '[', "b'MSET'", ']', 'for', 'key', ',', 'value', 'in', 'mapping', '.', 'items', '(', ')', ':', 'command', '+=', '[', 'key', ',', 'value', ']', 'return', 'self', '.', '_execute', '(', 'command', ',', "b'OK'", ')'] | Sets the given keys to their respective values.
:meth:`~tredis.RedisClient.mset` replaces existing values with new
values, just as regular :meth:`~tredis.RedisClient.set`. See
:meth:`~tredis.RedisClient.msetnx` if you don't want to overwrite
existing values.
:meth:`~tredis.RedisClient.mset` is atomic, so all given keys are set
at once. It is not possible for clients to see that some of the keys
were updated while others are unchanged.
.. versionadded:: 0.2.0
.. note:: **Time complexity**: ``O(N)`` where ``N`` is the number of
keys to set.
:param dict mapping: A mapping of key/value pairs to set
:rtype: bool
:raises: :exc:`~tredis.exceptions.RedisError` | ['Sets', 'the', 'given', 'keys', 'to', 'their', 'respective', 'values', '.', ':', 'meth', ':', '~tredis', '.', 'RedisClient', '.', 'mset', 'replaces', 'existing', 'values', 'with', 'new', 'values', 'just', 'as', 'regular', ':', 'meth', ':', '~tredis', '.', 'RedisClient', '.', 'set', '.', 'See', ':', 'meth', ':', '~tredis', '.', 'RedisClient', '.', 'msetnx', 'if', 'you', 'don', 't', 'want', 'to', 'overwrite', 'existing', 'values', '.'] | train | https://github.com/gmr/tredis/blob/2e91c6a58a35460be0525c51ac6a98fde3b506ad/tredis/strings.py#L440-L464 |
1,777 | JamesPHoughton/pysd | pysd/py_backend/functions.py | Macro.doc | def doc(self):
"""
Formats a table of documentation strings to help users remember variable names, and
understand how they are translated into python safe names.
Returns
-------
docs_df: pandas dataframe
Dataframe with columns for the model components:
- Real names
- Python safe identifiers (as used in model.components)
- Units string
- Documentation strings from the original model file
"""
collector = []
for name, varname in self.components._namespace.items():
try:
docstring = getattr(self.components, varname).__doc__
lines = docstring.split('\n')
collector.append({'Real Name': name,
'Py Name': varname,
'Eqn': lines[2].replace("Original Eqn:", "").strip(),
'Unit': lines[3].replace("Units:", "").strip(),
'Lims': lines[4].replace("Limits:", "").strip(),
'Type': lines[5].replace("Type:", "").strip(),
'Comment': '\n'.join(lines[7:]).strip()})
except:
pass
docs_df = _pd.DataFrame(collector)
docs_df.fillna('None', inplace=True)
order = ['Real Name', 'Py Name', 'Unit', 'Lims', 'Type', 'Eqn', 'Comment']
return docs_df[order].sort_values(by='Real Name').reset_index(drop=True) | python | def doc(self):
"""
Formats a table of documentation strings to help users remember variable names, and
understand how they are translated into python safe names.
Returns
-------
docs_df: pandas dataframe
Dataframe with columns for the model components:
- Real names
- Python safe identifiers (as used in model.components)
- Units string
- Documentation strings from the original model file
"""
collector = []
for name, varname in self.components._namespace.items():
try:
docstring = getattr(self.components, varname).__doc__
lines = docstring.split('\n')
collector.append({'Real Name': name,
'Py Name': varname,
'Eqn': lines[2].replace("Original Eqn:", "").strip(),
'Unit': lines[3].replace("Units:", "").strip(),
'Lims': lines[4].replace("Limits:", "").strip(),
'Type': lines[5].replace("Type:", "").strip(),
'Comment': '\n'.join(lines[7:]).strip()})
except:
pass
docs_df = _pd.DataFrame(collector)
docs_df.fillna('None', inplace=True)
order = ['Real Name', 'Py Name', 'Unit', 'Lims', 'Type', 'Eqn', 'Comment']
return docs_df[order].sort_values(by='Real Name').reset_index(drop=True) | ['def', 'doc', '(', 'self', ')', ':', 'collector', '=', '[', ']', 'for', 'name', ',', 'varname', 'in', 'self', '.', 'components', '.', '_namespace', '.', 'items', '(', ')', ':', 'try', ':', 'docstring', '=', 'getattr', '(', 'self', '.', 'components', ',', 'varname', ')', '.', '__doc__', 'lines', '=', 'docstring', '.', 'split', '(', "'\\n'", ')', 'collector', '.', 'append', '(', '{', "'Real Name'", ':', 'name', ',', "'Py Name'", ':', 'varname', ',', "'Eqn'", ':', 'lines', '[', '2', ']', '.', 'replace', '(', '"Original Eqn:"', ',', '""', ')', '.', 'strip', '(', ')', ',', "'Unit'", ':', 'lines', '[', '3', ']', '.', 'replace', '(', '"Units:"', ',', '""', ')', '.', 'strip', '(', ')', ',', "'Lims'", ':', 'lines', '[', '4', ']', '.', 'replace', '(', '"Limits:"', ',', '""', ')', '.', 'strip', '(', ')', ',', "'Type'", ':', 'lines', '[', '5', ']', '.', 'replace', '(', '"Type:"', ',', '""', ')', '.', 'strip', '(', ')', ',', "'Comment'", ':', "'\\n'", '.', 'join', '(', 'lines', '[', '7', ':', ']', ')', '.', 'strip', '(', ')', '}', ')', 'except', ':', 'pass', 'docs_df', '=', '_pd', '.', 'DataFrame', '(', 'collector', ')', 'docs_df', '.', 'fillna', '(', "'None'", ',', 'inplace', '=', 'True', ')', 'order', '=', '[', "'Real Name'", ',', "'Py Name'", ',', "'Unit'", ',', "'Lims'", ',', "'Type'", ',', "'Eqn'", ',', "'Comment'", ']', 'return', 'docs_df', '[', 'order', ']', '.', 'sort_values', '(', 'by', '=', "'Real Name'", ')', '.', 'reset_index', '(', 'drop', '=', 'True', ')'] | Formats a table of documentation strings to help users remember variable names, and
understand how they are translated into python safe names.
Returns
-------
docs_df: pandas dataframe
Dataframe with columns for the model components:
- Real names
- Python safe identifiers (as used in model.components)
- Units string
- Documentation strings from the original model file | ['Formats', 'a', 'table', 'of', 'documentation', 'strings', 'to', 'help', 'users', 'remember', 'variable', 'names', 'and', 'understand', 'how', 'they', 'are', 'translated', 'into', 'python', 'safe', 'names', '.'] | train | https://github.com/JamesPHoughton/pysd/blob/bf1b1d03954e9ba5acac9ba4f1ada7cd93352eda/pysd/py_backend/functions.py#L473-L506 |
1,778 | carta/ldap_tools | src/ldap_tools/user.py | CLI.create | def create(config, name, group, type):
"""Create an LDAP user."""
if type not in ('user', 'service'):
raise click.BadOptionUsage("--type must be 'user' or 'service'")
client = Client()
client.prepare_connection()
user_api = API(client)
group_api = GroupApi(client)
user_api.create(name[0], name[1], group, type, group_api) | python | def create(config, name, group, type):
"""Create an LDAP user."""
if type not in ('user', 'service'):
raise click.BadOptionUsage("--type must be 'user' or 'service'")
client = Client()
client.prepare_connection()
user_api = API(client)
group_api = GroupApi(client)
user_api.create(name[0], name[1], group, type, group_api) | ['def', 'create', '(', 'config', ',', 'name', ',', 'group', ',', 'type', ')', ':', 'if', 'type', 'not', 'in', '(', "'user'", ',', "'service'", ')', ':', 'raise', 'click', '.', 'BadOptionUsage', '(', '"--type must be \'user\' or \'service\'"', ')', 'client', '=', 'Client', '(', ')', 'client', '.', 'prepare_connection', '(', ')', 'user_api', '=', 'API', '(', 'client', ')', 'group_api', '=', 'GroupApi', '(', 'client', ')', 'user_api', '.', 'create', '(', 'name', '[', '0', ']', ',', 'name', '[', '1', ']', ',', 'group', ',', 'type', ',', 'group_api', ')'] | Create an LDAP user. | ['Create', 'an', 'LDAP', 'user', '.'] | train | https://github.com/carta/ldap_tools/blob/7c039304a5abaf836c7afc35cf068b4471306264/src/ldap_tools/user.py#L184-L192 |
1,779 | pyopenapi/pyswagger | pyswagger/io.py | Response.apply_with | def apply_with(self, status=None, raw=None, header=None):
""" update header, status code, raw datum, ...etc
:param int status: status code
:param str raw: body content
:param dict header: header section
:return: return self for chaining
:rtype: Response
"""
if status != None:
self.__status = status
r = (final(self.__op.responses.get(str(self.__status), None)) or
final(self.__op.responses.get('default', None)))
if header != None:
if isinstance(header, (collections.Mapping, collections.MutableMapping)):
for k, v in six.iteritems(header):
self._convert_header(r, k, v)
else:
for k, v in header:
self._convert_header(r, k, v)
if raw != None:
# update 'raw'
self.__raw = raw
if self.__status == None:
raise Exception('Update status code before assigning raw data')
if r and r.schema and not self.__raw_body_only:
# update data from Opeartion if succeed else from responseMessage.responseModel
content_type = 'application/json'
for k, v in six.iteritems(self.header):
if k.lower() == 'content-type':
content_type = v[0].lower()
break
schema = deref(r.schema)
_type = schema.type
_format = schema.format
name = schema.name
data = self.__op._mime_codec.unmarshal(content_type, self.raw, _type=_type, _format=_format, name=name)
self.__data = r.schema._prim_(data, self.__op._prim_factory, ctx=dict(read=True))
return self | python | def apply_with(self, status=None, raw=None, header=None):
""" update header, status code, raw datum, ...etc
:param int status: status code
:param str raw: body content
:param dict header: header section
:return: return self for chaining
:rtype: Response
"""
if status != None:
self.__status = status
r = (final(self.__op.responses.get(str(self.__status), None)) or
final(self.__op.responses.get('default', None)))
if header != None:
if isinstance(header, (collections.Mapping, collections.MutableMapping)):
for k, v in six.iteritems(header):
self._convert_header(r, k, v)
else:
for k, v in header:
self._convert_header(r, k, v)
if raw != None:
# update 'raw'
self.__raw = raw
if self.__status == None:
raise Exception('Update status code before assigning raw data')
if r and r.schema and not self.__raw_body_only:
# update data from Opeartion if succeed else from responseMessage.responseModel
content_type = 'application/json'
for k, v in six.iteritems(self.header):
if k.lower() == 'content-type':
content_type = v[0].lower()
break
schema = deref(r.schema)
_type = schema.type
_format = schema.format
name = schema.name
data = self.__op._mime_codec.unmarshal(content_type, self.raw, _type=_type, _format=_format, name=name)
self.__data = r.schema._prim_(data, self.__op._prim_factory, ctx=dict(read=True))
return self | ['def', 'apply_with', '(', 'self', ',', 'status', '=', 'None', ',', 'raw', '=', 'None', ',', 'header', '=', 'None', ')', ':', 'if', 'status', '!=', 'None', ':', 'self', '.', '__status', '=', 'status', 'r', '=', '(', 'final', '(', 'self', '.', '__op', '.', 'responses', '.', 'get', '(', 'str', '(', 'self', '.', '__status', ')', ',', 'None', ')', ')', 'or', 'final', '(', 'self', '.', '__op', '.', 'responses', '.', 'get', '(', "'default'", ',', 'None', ')', ')', ')', 'if', 'header', '!=', 'None', ':', 'if', 'isinstance', '(', 'header', ',', '(', 'collections', '.', 'Mapping', ',', 'collections', '.', 'MutableMapping', ')', ')', ':', 'for', 'k', ',', 'v', 'in', 'six', '.', 'iteritems', '(', 'header', ')', ':', 'self', '.', '_convert_header', '(', 'r', ',', 'k', ',', 'v', ')', 'else', ':', 'for', 'k', ',', 'v', 'in', 'header', ':', 'self', '.', '_convert_header', '(', 'r', ',', 'k', ',', 'v', ')', 'if', 'raw', '!=', 'None', ':', "# update 'raw'", 'self', '.', '__raw', '=', 'raw', 'if', 'self', '.', '__status', '==', 'None', ':', 'raise', 'Exception', '(', "'Update status code before assigning raw data'", ')', 'if', 'r', 'and', 'r', '.', 'schema', 'and', 'not', 'self', '.', '__raw_body_only', ':', '# update data from Opeartion if succeed else from responseMessage.responseModel', 'content_type', '=', "'application/json'", 'for', 'k', ',', 'v', 'in', 'six', '.', 'iteritems', '(', 'self', '.', 'header', ')', ':', 'if', 'k', '.', 'lower', '(', ')', '==', "'content-type'", ':', 'content_type', '=', 'v', '[', '0', ']', '.', 'lower', '(', ')', 'break', 'schema', '=', 'deref', '(', 'r', '.', 'schema', ')', '_type', '=', 'schema', '.', 'type', '_format', '=', 'schema', '.', 'format', 'name', '=', 'schema', '.', 'name', 'data', '=', 'self', '.', '__op', '.', '_mime_codec', '.', 'unmarshal', '(', 'content_type', ',', 'self', '.', 'raw', ',', '_type', '=', '_type', ',', '_format', '=', '_format', ',', 'name', '=', 'name', ')', 'self', '.', '__data', '=', 'r', '.', 'schema', '.', '_prim_', '(', 'data', ',', 'self', '.', '__op', '.', '_prim_factory', ',', 'ctx', '=', 'dict', '(', 'read', '=', 'True', ')', ')', 'return', 'self'] | update header, status code, raw datum, ...etc
:param int status: status code
:param str raw: body content
:param dict header: header section
:return: return self for chaining
:rtype: Response | ['update', 'header', 'status', 'code', 'raw', 'datum', '...', 'etc'] | train | https://github.com/pyopenapi/pyswagger/blob/333c4ca08e758cd2194943d9904a3eda3fe43977/pyswagger/io.py#L374-L419 |
1,780 | rigetti/pyquil | examples/pointer.py | pointer_gate | def pointer_gate(num_qubits, U):
"""
Make a pointer gate on `num_qubits`. The one-qubit gate U will act on the
qubit addressed by the pointer qubits interpreted as an unsigned binary
integer.
There are P = floor(lg(num_qubits)) pointer qubits, and qubits numbered
N - 1
N - 2
...
N - P
are those reserved to represent the pointer. The first N - P qubits
are the qubits which the one-qubit gate U can act on.
"""
ptr_bits = int(floor(np.log2(num_qubits)))
data_bits = num_qubits - ptr_bits
ptr_state = 0
assert ptr_bits > 0
program = pq.Program()
program.defgate("CU", controlled(ptr_bits, U))
for _, target_qubit, changed in gray(ptr_bits):
if changed is None:
for ptr_qubit in range(num_qubits - ptr_bits, num_qubits):
program.inst(X(ptr_qubit))
ptr_state ^= 1 << (ptr_qubit - data_bits)
else:
program.inst(X(data_bits + changed))
ptr_state ^= 1 << changed
if target_qubit < data_bits:
control_qubits = tuple(data_bits + i for i in range(ptr_bits))
program.inst(("CU",) + control_qubits + (target_qubit,))
fixup(program, data_bits, ptr_bits, ptr_state)
return program | python | def pointer_gate(num_qubits, U):
"""
Make a pointer gate on `num_qubits`. The one-qubit gate U will act on the
qubit addressed by the pointer qubits interpreted as an unsigned binary
integer.
There are P = floor(lg(num_qubits)) pointer qubits, and qubits numbered
N - 1
N - 2
...
N - P
are those reserved to represent the pointer. The first N - P qubits
are the qubits which the one-qubit gate U can act on.
"""
ptr_bits = int(floor(np.log2(num_qubits)))
data_bits = num_qubits - ptr_bits
ptr_state = 0
assert ptr_bits > 0
program = pq.Program()
program.defgate("CU", controlled(ptr_bits, U))
for _, target_qubit, changed in gray(ptr_bits):
if changed is None:
for ptr_qubit in range(num_qubits - ptr_bits, num_qubits):
program.inst(X(ptr_qubit))
ptr_state ^= 1 << (ptr_qubit - data_bits)
else:
program.inst(X(data_bits + changed))
ptr_state ^= 1 << changed
if target_qubit < data_bits:
control_qubits = tuple(data_bits + i for i in range(ptr_bits))
program.inst(("CU",) + control_qubits + (target_qubit,))
fixup(program, data_bits, ptr_bits, ptr_state)
return program | ['def', 'pointer_gate', '(', 'num_qubits', ',', 'U', ')', ':', 'ptr_bits', '=', 'int', '(', 'floor', '(', 'np', '.', 'log2', '(', 'num_qubits', ')', ')', ')', 'data_bits', '=', 'num_qubits', '-', 'ptr_bits', 'ptr_state', '=', '0', 'assert', 'ptr_bits', '>', '0', 'program', '=', 'pq', '.', 'Program', '(', ')', 'program', '.', 'defgate', '(', '"CU"', ',', 'controlled', '(', 'ptr_bits', ',', 'U', ')', ')', 'for', '_', ',', 'target_qubit', ',', 'changed', 'in', 'gray', '(', 'ptr_bits', ')', ':', 'if', 'changed', 'is', 'None', ':', 'for', 'ptr_qubit', 'in', 'range', '(', 'num_qubits', '-', 'ptr_bits', ',', 'num_qubits', ')', ':', 'program', '.', 'inst', '(', 'X', '(', 'ptr_qubit', ')', ')', 'ptr_state', '^=', '1', '<<', '(', 'ptr_qubit', '-', 'data_bits', ')', 'else', ':', 'program', '.', 'inst', '(', 'X', '(', 'data_bits', '+', 'changed', ')', ')', 'ptr_state', '^=', '1', '<<', 'changed', 'if', 'target_qubit', '<', 'data_bits', ':', 'control_qubits', '=', 'tuple', '(', 'data_bits', '+', 'i', 'for', 'i', 'in', 'range', '(', 'ptr_bits', ')', ')', 'program', '.', 'inst', '(', '(', '"CU"', ',', ')', '+', 'control_qubits', '+', '(', 'target_qubit', ',', ')', ')', 'fixup', '(', 'program', ',', 'data_bits', ',', 'ptr_bits', ',', 'ptr_state', ')', 'return', 'program'] | Make a pointer gate on `num_qubits`. The one-qubit gate U will act on the
qubit addressed by the pointer qubits interpreted as an unsigned binary
integer.
There are P = floor(lg(num_qubits)) pointer qubits, and qubits numbered
N - 1
N - 2
...
N - P
are those reserved to represent the pointer. The first N - P qubits
are the qubits which the one-qubit gate U can act on. | ['Make', 'a', 'pointer', 'gate', 'on', 'num_qubits', '.', 'The', 'one', '-', 'qubit', 'gate', 'U', 'will', 'act', 'on', 'the', 'qubit', 'addressed', 'by', 'the', 'pointer', 'qubits', 'interpreted', 'as', 'an', 'unsigned', 'binary', 'integer', '.'] | train | https://github.com/rigetti/pyquil/blob/ec98e453084b0037d69d8c3245f6822a5422593d/examples/pointer.py#L77-L116 |
1,781 | mattja/nsim | nsim/analyses1/pyeeg.py | hjorth | def hjorth(X, D=None):
""" Compute Hjorth mobility and complexity of a time series from either two
cases below:
1. X, the time series of type list (default)
2. D, a first order differential sequence of X (if D is provided,
recommended to speed up)
In case 1, D is computed using Numpy's Difference function.
Notes
-----
To speed up, it is recommended to compute D before calling this function
because D may also be used by other functions whereas computing it here
again will slow down.
Parameters
----------
X
list
a time series
D
list
first order differential sequence of a time series
Returns
-------
As indicated in return line
Hjorth mobility and complexity
"""
if D is None:
D = numpy.diff(X)
D = D.tolist()
D.insert(0, X[0]) # pad the first difference
D = numpy.array(D)
n = len(X)
M2 = float(sum(D ** 2)) / n
TP = sum(numpy.array(X) ** 2)
M4 = 0
for i in range(1, len(D)):
M4 += (D[i] - D[i - 1]) ** 2
M4 = M4 / n
return numpy.sqrt(M2 / TP), numpy.sqrt(
float(M4) * TP / M2 / M2
) | python | def hjorth(X, D=None):
""" Compute Hjorth mobility and complexity of a time series from either two
cases below:
1. X, the time series of type list (default)
2. D, a first order differential sequence of X (if D is provided,
recommended to speed up)
In case 1, D is computed using Numpy's Difference function.
Notes
-----
To speed up, it is recommended to compute D before calling this function
because D may also be used by other functions whereas computing it here
again will slow down.
Parameters
----------
X
list
a time series
D
list
first order differential sequence of a time series
Returns
-------
As indicated in return line
Hjorth mobility and complexity
"""
if D is None:
D = numpy.diff(X)
D = D.tolist()
D.insert(0, X[0]) # pad the first difference
D = numpy.array(D)
n = len(X)
M2 = float(sum(D ** 2)) / n
TP = sum(numpy.array(X) ** 2)
M4 = 0
for i in range(1, len(D)):
M4 += (D[i] - D[i - 1]) ** 2
M4 = M4 / n
return numpy.sqrt(M2 / TP), numpy.sqrt(
float(M4) * TP / M2 / M2
) | ['def', 'hjorth', '(', 'X', ',', 'D', '=', 'None', ')', ':', 'if', 'D', 'is', 'None', ':', 'D', '=', 'numpy', '.', 'diff', '(', 'X', ')', 'D', '=', 'D', '.', 'tolist', '(', ')', 'D', '.', 'insert', '(', '0', ',', 'X', '[', '0', ']', ')', '# pad the first difference', 'D', '=', 'numpy', '.', 'array', '(', 'D', ')', 'n', '=', 'len', '(', 'X', ')', 'M2', '=', 'float', '(', 'sum', '(', 'D', '**', '2', ')', ')', '/', 'n', 'TP', '=', 'sum', '(', 'numpy', '.', 'array', '(', 'X', ')', '**', '2', ')', 'M4', '=', '0', 'for', 'i', 'in', 'range', '(', '1', ',', 'len', '(', 'D', ')', ')', ':', 'M4', '+=', '(', 'D', '[', 'i', ']', '-', 'D', '[', 'i', '-', '1', ']', ')', '**', '2', 'M4', '=', 'M4', '/', 'n', 'return', 'numpy', '.', 'sqrt', '(', 'M2', '/', 'TP', ')', ',', 'numpy', '.', 'sqrt', '(', 'float', '(', 'M4', ')', '*', 'TP', '/', 'M2', '/', 'M2', ')'] | Compute Hjorth mobility and complexity of a time series from either two
cases below:
1. X, the time series of type list (default)
2. D, a first order differential sequence of X (if D is provided,
recommended to speed up)
In case 1, D is computed using Numpy's Difference function.
Notes
-----
To speed up, it is recommended to compute D before calling this function
because D may also be used by other functions whereas computing it here
again will slow down.
Parameters
----------
X
list
a time series
D
list
first order differential sequence of a time series
Returns
-------
As indicated in return line
Hjorth mobility and complexity | ['Compute', 'Hjorth', 'mobility', 'and', 'complexity', 'of', 'a', 'time', 'series', 'from', 'either', 'two', 'cases', 'below', ':', '1', '.', 'X', 'the', 'time', 'series', 'of', 'type', 'list', '(', 'default', ')', '2', '.', 'D', 'a', 'first', 'order', 'differential', 'sequence', 'of', 'X', '(', 'if', 'D', 'is', 'provided', 'recommended', 'to', 'speed', 'up', ')'] | train | https://github.com/mattja/nsim/blob/ed62c41cd56b918fd97e09f7ad73c12c76a8c3e0/nsim/analyses1/pyeeg.py#L277-L332 |
1,782 | bmweiner/skillful | skillful/interface.py | ResponseBody.set_card_simple | def set_card_simple(self, title, content):
"""Set response card as simple type.
title and content cannot exceed 8,000 characters.
Args:
title: str. Title of Simple or Standard type card.
content: str. Content of Simple type card.
"""
self.response.card.type = 'Simple'
self.response.card.title = title
self.response.card.content = content | python | def set_card_simple(self, title, content):
"""Set response card as simple type.
title and content cannot exceed 8,000 characters.
Args:
title: str. Title of Simple or Standard type card.
content: str. Content of Simple type card.
"""
self.response.card.type = 'Simple'
self.response.card.title = title
self.response.card.content = content | ['def', 'set_card_simple', '(', 'self', ',', 'title', ',', 'content', ')', ':', 'self', '.', 'response', '.', 'card', '.', 'type', '=', "'Simple'", 'self', '.', 'response', '.', 'card', '.', 'title', '=', 'title', 'self', '.', 'response', '.', 'card', '.', 'content', '=', 'content'] | Set response card as simple type.
title and content cannot exceed 8,000 characters.
Args:
title: str. Title of Simple or Standard type card.
content: str. Content of Simple type card. | ['Set', 'response', 'card', 'as', 'simple', 'type', '.'] | train | https://github.com/bmweiner/skillful/blob/8646f54faf62cb63f165f7699b8ace5b4a08233c/skillful/interface.py#L386-L397 |
1,783 | amzn/ion-python | amazon/ion/writer_buffer.py | BufferTree.start_container | def start_container(self):
"""Add a node to the tree that represents the start of a container.
Until end_container is called, any nodes added through add_scalar_value
or start_container will be children of this new node.
"""
self.__container_lengths.append(self.current_container_length)
self.current_container_length = 0
new_container_node = _Node()
self.__container_node.add_child(new_container_node)
self.__container_nodes.append(self.__container_node)
self.__container_node = new_container_node | python | def start_container(self):
"""Add a node to the tree that represents the start of a container.
Until end_container is called, any nodes added through add_scalar_value
or start_container will be children of this new node.
"""
self.__container_lengths.append(self.current_container_length)
self.current_container_length = 0
new_container_node = _Node()
self.__container_node.add_child(new_container_node)
self.__container_nodes.append(self.__container_node)
self.__container_node = new_container_node | ['def', 'start_container', '(', 'self', ')', ':', 'self', '.', '__container_lengths', '.', 'append', '(', 'self', '.', 'current_container_length', ')', 'self', '.', 'current_container_length', '=', '0', 'new_container_node', '=', '_Node', '(', ')', 'self', '.', '__container_node', '.', 'add_child', '(', 'new_container_node', ')', 'self', '.', '__container_nodes', '.', 'append', '(', 'self', '.', '__container_node', ')', 'self', '.', '__container_node', '=', 'new_container_node'] | Add a node to the tree that represents the start of a container.
Until end_container is called, any nodes added through add_scalar_value
or start_container will be children of this new node. | ['Add', 'a', 'node', 'to', 'the', 'tree', 'that', 'represents', 'the', 'start', 'of', 'a', 'container', '.'] | train | https://github.com/amzn/ion-python/blob/0b21fa3ba7755f55f745e4aa970d86343b82449d/amazon/ion/writer_buffer.py#L91-L102 |
1,784 | MacHu-GWU/dataIO-project | dataIO/js.py | load | def load(abspath, default=None, enable_verbose=True):
"""Load Json from file. If file are not exists, returns ``default``.
:param abspath: file path. use absolute path as much as you can.
extension has to be ``.json`` or ``.gz`` (for compressed Json).
:type abspath: string
:param default: default ``dict()``, if ``abspath`` not exists, return the
default Python object instead.
:param enable_verbose: default ``True``, help-message-display trigger.
:type enable_verbose: boolean
Usage::
>>> from dataIO import js
>>> js.load("test.json") # if you have a json file
Load from 'test.json' ...
Complete! Elapse 0.000432 sec.
{'a': 1, 'b': 2}
**中文文档**
从Json文件中读取数据
:param abspath: Json文件绝对路径, 扩展名需为 ``.json`` 或 ``.gz``, 其中 ``.gz``
是被压缩后的Json文件
:type abspath: ``字符串``
:param default: 默认 ``dict()``, 如果文件路径不存在, 则会返回指定的默认值
:param enable_verbose: 默认 ``True``, 信息提示的开关, 批处理时建议关闭
:type enable_verbose: ``布尔值``
"""
if default is None:
default = dict()
prt("\nLoad from '%s' ..." % abspath, enable_verbose)
abspath = lower_ext(str(abspath))
is_json = is_json_file(abspath)
if not os.path.exists(abspath):
prt(" File not found, use default value: %r" %
default, enable_verbose)
return default
st = time.clock()
if is_json:
data = json.loads(textfile.read(abspath, encoding="utf-8"))
else:
data = json.loads(compress.read_gzip(abspath).decode("utf-8"))
prt(" Complete! Elapse %.6f sec." % (time.clock() - st), enable_verbose)
return data | python | def load(abspath, default=None, enable_verbose=True):
"""Load Json from file. If file are not exists, returns ``default``.
:param abspath: file path. use absolute path as much as you can.
extension has to be ``.json`` or ``.gz`` (for compressed Json).
:type abspath: string
:param default: default ``dict()``, if ``abspath`` not exists, return the
default Python object instead.
:param enable_verbose: default ``True``, help-message-display trigger.
:type enable_verbose: boolean
Usage::
>>> from dataIO import js
>>> js.load("test.json") # if you have a json file
Load from 'test.json' ...
Complete! Elapse 0.000432 sec.
{'a': 1, 'b': 2}
**中文文档**
从Json文件中读取数据
:param abspath: Json文件绝对路径, 扩展名需为 ``.json`` 或 ``.gz``, 其中 ``.gz``
是被压缩后的Json文件
:type abspath: ``字符串``
:param default: 默认 ``dict()``, 如果文件路径不存在, 则会返回指定的默认值
:param enable_verbose: 默认 ``True``, 信息提示的开关, 批处理时建议关闭
:type enable_verbose: ``布尔值``
"""
if default is None:
default = dict()
prt("\nLoad from '%s' ..." % abspath, enable_verbose)
abspath = lower_ext(str(abspath))
is_json = is_json_file(abspath)
if not os.path.exists(abspath):
prt(" File not found, use default value: %r" %
default, enable_verbose)
return default
st = time.clock()
if is_json:
data = json.loads(textfile.read(abspath, encoding="utf-8"))
else:
data = json.loads(compress.read_gzip(abspath).decode("utf-8"))
prt(" Complete! Elapse %.6f sec." % (time.clock() - st), enable_verbose)
return data | ['def', 'load', '(', 'abspath', ',', 'default', '=', 'None', ',', 'enable_verbose', '=', 'True', ')', ':', 'if', 'default', 'is', 'None', ':', 'default', '=', 'dict', '(', ')', 'prt', '(', '"\\nLoad from \'%s\' ..."', '%', 'abspath', ',', 'enable_verbose', ')', 'abspath', '=', 'lower_ext', '(', 'str', '(', 'abspath', ')', ')', 'is_json', '=', 'is_json_file', '(', 'abspath', ')', 'if', 'not', 'os', '.', 'path', '.', 'exists', '(', 'abspath', ')', ':', 'prt', '(', '" File not found, use default value: %r"', '%', 'default', ',', 'enable_verbose', ')', 'return', 'default', 'st', '=', 'time', '.', 'clock', '(', ')', 'if', 'is_json', ':', 'data', '=', 'json', '.', 'loads', '(', 'textfile', '.', 'read', '(', 'abspath', ',', 'encoding', '=', '"utf-8"', ')', ')', 'else', ':', 'data', '=', 'json', '.', 'loads', '(', 'compress', '.', 'read_gzip', '(', 'abspath', ')', '.', 'decode', '(', '"utf-8"', ')', ')', 'prt', '(', '" Complete! Elapse %.6f sec."', '%', '(', 'time', '.', 'clock', '(', ')', '-', 'st', ')', ',', 'enable_verbose', ')', 'return', 'data'] | Load Json from file. If file are not exists, returns ``default``.
:param abspath: file path. use absolute path as much as you can.
extension has to be ``.json`` or ``.gz`` (for compressed Json).
:type abspath: string
:param default: default ``dict()``, if ``abspath`` not exists, return the
default Python object instead.
:param enable_verbose: default ``True``, help-message-display trigger.
:type enable_verbose: boolean
Usage::
>>> from dataIO import js
>>> js.load("test.json") # if you have a json file
Load from 'test.json' ...
Complete! Elapse 0.000432 sec.
{'a': 1, 'b': 2}
**中文文档**
从Json文件中读取数据
:param abspath: Json文件绝对路径, 扩展名需为 ``.json`` 或 ``.gz``, 其中 ``.gz``
是被压缩后的Json文件
:type abspath: ``字符串``
:param default: 默认 ``dict()``, 如果文件路径不存在, 则会返回指定的默认值
:param enable_verbose: 默认 ``True``, 信息提示的开关, 批处理时建议关闭
:type enable_verbose: ``布尔值`` | ['Load', 'Json', 'from', 'file', '.', 'If', 'file', 'are', 'not', 'exists', 'returns', 'default', '.'] | train | https://github.com/MacHu-GWU/dataIO-project/blob/7e1cc192b5e53426eed6dbd742918619b8fd60ab/dataIO/js.py#L78-L132 |
1,785 | BlueBrain/NeuroM | neurom/check/neuron_checks.py | has_no_flat_neurites | def has_no_flat_neurites(neuron, tol=0.1, method='ratio'):
'''Check that a neuron has no flat neurites
Arguments:
neuron(Neuron): The neuron object to test
tol(float): tolerance
method(string): way of determining flatness, 'tolerance', 'ratio' \
as described in :meth:`neurom.check.morphtree.get_flat_neurites`
Returns:
CheckResult with result
'''
return CheckResult(len(get_flat_neurites(neuron, tol, method)) == 0) | python | def has_no_flat_neurites(neuron, tol=0.1, method='ratio'):
'''Check that a neuron has no flat neurites
Arguments:
neuron(Neuron): The neuron object to test
tol(float): tolerance
method(string): way of determining flatness, 'tolerance', 'ratio' \
as described in :meth:`neurom.check.morphtree.get_flat_neurites`
Returns:
CheckResult with result
'''
return CheckResult(len(get_flat_neurites(neuron, tol, method)) == 0) | ['def', 'has_no_flat_neurites', '(', 'neuron', ',', 'tol', '=', '0.1', ',', 'method', '=', "'ratio'", ')', ':', 'return', 'CheckResult', '(', 'len', '(', 'get_flat_neurites', '(', 'neuron', ',', 'tol', ',', 'method', ')', ')', '==', '0', ')'] | Check that a neuron has no flat neurites
Arguments:
neuron(Neuron): The neuron object to test
tol(float): tolerance
method(string): way of determining flatness, 'tolerance', 'ratio' \
as described in :meth:`neurom.check.morphtree.get_flat_neurites`
Returns:
CheckResult with result | ['Check', 'that', 'a', 'neuron', 'has', 'no', 'flat', 'neurites'] | train | https://github.com/BlueBrain/NeuroM/blob/254bb73535b20053d175bc4725bade662177d12b/neurom/check/neuron_checks.py#L100-L112 |
1,786 | draperjames/qtpandas | qtpandas/utils.py | fillNoneValues | def fillNoneValues(column):
"""Fill all NaN/NaT values of a column with an empty string
Args:
column (pandas.Series): A Series object with all rows.
Returns:
column: Series with filled NaN values.
"""
if column.dtype == object:
column.fillna('', inplace=True)
return column | python | def fillNoneValues(column):
"""Fill all NaN/NaT values of a column with an empty string
Args:
column (pandas.Series): A Series object with all rows.
Returns:
column: Series with filled NaN values.
"""
if column.dtype == object:
column.fillna('', inplace=True)
return column | ['def', 'fillNoneValues', '(', 'column', ')', ':', 'if', 'column', '.', 'dtype', '==', 'object', ':', 'column', '.', 'fillna', '(', "''", ',', 'inplace', '=', 'True', ')', 'return', 'column'] | Fill all NaN/NaT values of a column with an empty string
Args:
column (pandas.Series): A Series object with all rows.
Returns:
column: Series with filled NaN values. | ['Fill', 'all', 'NaN', '/', 'NaT', 'values', 'of', 'a', 'column', 'with', 'an', 'empty', 'string'] | train | https://github.com/draperjames/qtpandas/blob/64294fb69f1839e53dee5ea453337266bfaf24f4/qtpandas/utils.py#L19-L30 |
1,787 | Rapptz/discord.py | discord/iterators.py | HistoryIterator._retrieve_messages_before_strategy | async def _retrieve_messages_before_strategy(self, retrieve):
"""Retrieve messages using before parameter."""
before = self.before.id if self.before else None
data = await self.logs_from(self.channel.id, retrieve, before=before)
if len(data):
if self.limit is not None:
self.limit -= retrieve
self.before = Object(id=int(data[-1]['id']))
return data | python | async def _retrieve_messages_before_strategy(self, retrieve):
"""Retrieve messages using before parameter."""
before = self.before.id if self.before else None
data = await self.logs_from(self.channel.id, retrieve, before=before)
if len(data):
if self.limit is not None:
self.limit -= retrieve
self.before = Object(id=int(data[-1]['id']))
return data | ['async', 'def', '_retrieve_messages_before_strategy', '(', 'self', ',', 'retrieve', ')', ':', 'before', '=', 'self', '.', 'before', '.', 'id', 'if', 'self', '.', 'before', 'else', 'None', 'data', '=', 'await', 'self', '.', 'logs_from', '(', 'self', '.', 'channel', '.', 'id', ',', 'retrieve', ',', 'before', '=', 'before', ')', 'if', 'len', '(', 'data', ')', ':', 'if', 'self', '.', 'limit', 'is', 'not', 'None', ':', 'self', '.', 'limit', '-=', 'retrieve', 'self', '.', 'before', '=', 'Object', '(', 'id', '=', 'int', '(', 'data', '[', '-', '1', ']', '[', "'id'", ']', ')', ')', 'return', 'data'] | Retrieve messages using before parameter. | ['Retrieve', 'messages', 'using', 'before', 'parameter', '.'] | train | https://github.com/Rapptz/discord.py/blob/05d4f7f9620ef33635d6ac965b26528e09cdaf5b/discord/iterators.py#L325-L333 |
1,788 | MKLab-ITI/reveal-graph-embedding | reveal_graph_embedding/datautil/score_rw_util.py | write_average_score_row | def write_average_score_row(fp, score_name, scores):
"""
Simple utility function that writes an average score row in a file designated by a file pointer.
Inputs: - fp: A file pointer.
- score_name: What it says on the tin.
- scores: An array of average score values corresponding to each of the training set percentages.
"""
row = "--" + score_name + "--"
fp.write(row)
for vector in scores:
row = list(vector)
row = [str(score) for score in row]
row = "\n" + "\t".join(row)
fp.write(row) | python | def write_average_score_row(fp, score_name, scores):
"""
Simple utility function that writes an average score row in a file designated by a file pointer.
Inputs: - fp: A file pointer.
- score_name: What it says on the tin.
- scores: An array of average score values corresponding to each of the training set percentages.
"""
row = "--" + score_name + "--"
fp.write(row)
for vector in scores:
row = list(vector)
row = [str(score) for score in row]
row = "\n" + "\t".join(row)
fp.write(row) | ['def', 'write_average_score_row', '(', 'fp', ',', 'score_name', ',', 'scores', ')', ':', 'row', '=', '"--"', '+', 'score_name', '+', '"--"', 'fp', '.', 'write', '(', 'row', ')', 'for', 'vector', 'in', 'scores', ':', 'row', '=', 'list', '(', 'vector', ')', 'row', '=', '[', 'str', '(', 'score', ')', 'for', 'score', 'in', 'row', ']', 'row', '=', '"\\n"', '+', '"\\t"', '.', 'join', '(', 'row', ')', 'fp', '.', 'write', '(', 'row', ')'] | Simple utility function that writes an average score row in a file designated by a file pointer.
Inputs: - fp: A file pointer.
- score_name: What it says on the tin.
- scores: An array of average score values corresponding to each of the training set percentages. | ['Simple', 'utility', 'function', 'that', 'writes', 'an', 'average', 'score', 'row', 'in', 'a', 'file', 'designated', 'by', 'a', 'file', 'pointer', '.'] | train | https://github.com/MKLab-ITI/reveal-graph-embedding/blob/eda862687aa5a64b79c6b12de1b4dca6ce986dc8/reveal_graph_embedding/datautil/score_rw_util.py#L76-L90 |
1,789 | PMBio/limix-backup | limix/mtSet/iset.py | fit_iSet | def fit_iSet(Y, U_R=None, S_R=None, covs=None, Xr=None, n_perms=0, Ie=None,
strat=False, verbose=True):
"""
Args:
Y: [N, P] phenotype matrix
S_R: N vector of eigenvalues of R
U_R: [N, N] eigenvector matrix of R
covs: [N, K] matrix for K covariates
Xr: [N, S] genotype data of the set component
n_perms: number of permutations to consider
Ie: N boolean context indicator
strat: if True, the implementation with stratified designs is considered
"""
factr=1e7 # remove?
if strat:
assert Ie is not None, 'Ie must be specified for stratification analyses'
assert Y.shape[1]==1, 'Y must be Nx1 for stratification analysis'
else:
assert covs==None, 'Covariates are not supported for analysis of fully observed phenotypes'
if verbose: print('fittng iSet')
if strat:
mtSetGxE = ISet_Strat(Y, Ie, Xr, covs=covs)
RV = {}
RV['null'] = mtSetGxE.fitNull()
RV['rank2'] = mtSetGxE.fitFullRank()
RV['rank1'] = mtSetGxE.fitLowRank()
RV['block'] = mtSetGxE.fitBlock()
RV['var'] = mtSetGxE.getVC()
else:
mtSetGxE = ISet_Full(Y=Y, S_R=S_R, U_R=U_R, Xr=Xr, factr=factr)
RV = {}
RV['null'] = mtSetGxE.fitNull()
RV['rank2'] = mtSetGxE.fitFullRank()
RV['rank1'] = mtSetGxE.fitLowRank()
LLR = RV['rank1']['NLLAlt'] - RV['rank2']['NLLAlt']
if LLR<-1e-6:
RV['rank2'] = mtSetGxE.fitFullRank(init_method='lr')
try:
RV['block'] = mtSetGxE.fitBlock()
except:
try:
RV['block'] = mtSetGxE.fitBlock(init_method='null')
except:
RV['block'] = mtSetGxE.fitBlock(init_method='null_no_opt')
RV['var'] = mtSetGxE.getVC()
if n_perms>0:
RVperm = {}
nulls = ['null', 'block', 'rank1']
tests = ['mtSet', 'iSet', 'iSet-het']
for test in tests:
RVperm[test+' LLR0'] = sp.zeros(n_perms)
for seed_i in range(n_perms):
if verbose: print('permutation %d / %d' % (seed_i, n_perms))
for it, test in enumerate(tests):
if test=='mtSet':
idxs = sp.random.permutation(Xr.shape[0])
_Xr = Xr[idxs, :]
df0 = fit_iSet(Y, U_R=U_R, S_R=S_R, covs=covs, Xr=_Xr, n_perms=0, Ie=Ie, strat=strat, verbose=False)
else:
Y0 = mtSetGxE._sim_from(set_covar=nulls[it])
Y0 -= Y0.mean(0)
df0 = fit_iSet(Y0, U_R=U_R, S_R=S_R, covs=covs, Xr=Xr, n_perms=0, Ie=Ie, strat=strat, verbose=False)
RVperm[test+' LLR0'][seed_i] = df0[test+' LLR'][0]
# output
LLR_mtSet = RV['null']['NLL']-RV['rank2']['NLL']
LLR_iSet = RV['block']['NLL']-RV['rank2']['NLL']
LLR_iSet_het = RV['rank1']['NLL']-RV['rank2']['NLL']
if strat: var_keys = ['var_r_full', 'var_c', 'var_n']
else: var_keys = ['var_r_full', 'var_g', 'var_n']
varT = sp.sum([RV['var'][key] for key in var_keys])
var_pers = RV['var']['var_r_block'] / varT
var_resc = (RV['var']['var_r_rank1'] - RV['var']['var_r_block']) / varT
var_het = (RV['var']['var_r_full'] - RV['var']['var_r_rank1']) / varT
conv = RV['null']['conv']
conv*= RV['block']['conv']
conv*= RV['rank1']['conv']
conv*= RV['rank2']['conv']
M = sp.array([LLR_mtSet, LLR_iSet, LLR_iSet_het, var_pers, var_resc, var_het, conv]).T
columns = ['mtSet LLR', 'iSet LLR', 'iSet-het LLR',
'Persistent Var', 'Rescaling-GxC Var', 'Heterogeneity-GxC var', 'Converged']
df = pd.DataFrame(M, columns=columns)
if n_perms>0:
return df, pd.DataFrame(RVperm)
return df | python | def fit_iSet(Y, U_R=None, S_R=None, covs=None, Xr=None, n_perms=0, Ie=None,
strat=False, verbose=True):
"""
Args:
Y: [N, P] phenotype matrix
S_R: N vector of eigenvalues of R
U_R: [N, N] eigenvector matrix of R
covs: [N, K] matrix for K covariates
Xr: [N, S] genotype data of the set component
n_perms: number of permutations to consider
Ie: N boolean context indicator
strat: if True, the implementation with stratified designs is considered
"""
factr=1e7 # remove?
if strat:
assert Ie is not None, 'Ie must be specified for stratification analyses'
assert Y.shape[1]==1, 'Y must be Nx1 for stratification analysis'
else:
assert covs==None, 'Covariates are not supported for analysis of fully observed phenotypes'
if verbose: print('fittng iSet')
if strat:
mtSetGxE = ISet_Strat(Y, Ie, Xr, covs=covs)
RV = {}
RV['null'] = mtSetGxE.fitNull()
RV['rank2'] = mtSetGxE.fitFullRank()
RV['rank1'] = mtSetGxE.fitLowRank()
RV['block'] = mtSetGxE.fitBlock()
RV['var'] = mtSetGxE.getVC()
else:
mtSetGxE = ISet_Full(Y=Y, S_R=S_R, U_R=U_R, Xr=Xr, factr=factr)
RV = {}
RV['null'] = mtSetGxE.fitNull()
RV['rank2'] = mtSetGxE.fitFullRank()
RV['rank1'] = mtSetGxE.fitLowRank()
LLR = RV['rank1']['NLLAlt'] - RV['rank2']['NLLAlt']
if LLR<-1e-6:
RV['rank2'] = mtSetGxE.fitFullRank(init_method='lr')
try:
RV['block'] = mtSetGxE.fitBlock()
except:
try:
RV['block'] = mtSetGxE.fitBlock(init_method='null')
except:
RV['block'] = mtSetGxE.fitBlock(init_method='null_no_opt')
RV['var'] = mtSetGxE.getVC()
if n_perms>0:
RVperm = {}
nulls = ['null', 'block', 'rank1']
tests = ['mtSet', 'iSet', 'iSet-het']
for test in tests:
RVperm[test+' LLR0'] = sp.zeros(n_perms)
for seed_i in range(n_perms):
if verbose: print('permutation %d / %d' % (seed_i, n_perms))
for it, test in enumerate(tests):
if test=='mtSet':
idxs = sp.random.permutation(Xr.shape[0])
_Xr = Xr[idxs, :]
df0 = fit_iSet(Y, U_R=U_R, S_R=S_R, covs=covs, Xr=_Xr, n_perms=0, Ie=Ie, strat=strat, verbose=False)
else:
Y0 = mtSetGxE._sim_from(set_covar=nulls[it])
Y0 -= Y0.mean(0)
df0 = fit_iSet(Y0, U_R=U_R, S_R=S_R, covs=covs, Xr=Xr, n_perms=0, Ie=Ie, strat=strat, verbose=False)
RVperm[test+' LLR0'][seed_i] = df0[test+' LLR'][0]
# output
LLR_mtSet = RV['null']['NLL']-RV['rank2']['NLL']
LLR_iSet = RV['block']['NLL']-RV['rank2']['NLL']
LLR_iSet_het = RV['rank1']['NLL']-RV['rank2']['NLL']
if strat: var_keys = ['var_r_full', 'var_c', 'var_n']
else: var_keys = ['var_r_full', 'var_g', 'var_n']
varT = sp.sum([RV['var'][key] for key in var_keys])
var_pers = RV['var']['var_r_block'] / varT
var_resc = (RV['var']['var_r_rank1'] - RV['var']['var_r_block']) / varT
var_het = (RV['var']['var_r_full'] - RV['var']['var_r_rank1']) / varT
conv = RV['null']['conv']
conv*= RV['block']['conv']
conv*= RV['rank1']['conv']
conv*= RV['rank2']['conv']
M = sp.array([LLR_mtSet, LLR_iSet, LLR_iSet_het, var_pers, var_resc, var_het, conv]).T
columns = ['mtSet LLR', 'iSet LLR', 'iSet-het LLR',
'Persistent Var', 'Rescaling-GxC Var', 'Heterogeneity-GxC var', 'Converged']
df = pd.DataFrame(M, columns=columns)
if n_perms>0:
return df, pd.DataFrame(RVperm)
return df | ['def', 'fit_iSet', '(', 'Y', ',', 'U_R', '=', 'None', ',', 'S_R', '=', 'None', ',', 'covs', '=', 'None', ',', 'Xr', '=', 'None', ',', 'n_perms', '=', '0', ',', 'Ie', '=', 'None', ',', 'strat', '=', 'False', ',', 'verbose', '=', 'True', ')', ':', 'factr', '=', '1e7', '# remove?', 'if', 'strat', ':', 'assert', 'Ie', 'is', 'not', 'None', ',', "'Ie must be specified for stratification analyses'", 'assert', 'Y', '.', 'shape', '[', '1', ']', '==', '1', ',', "'Y must be Nx1 for stratification analysis'", 'else', ':', 'assert', 'covs', '==', 'None', ',', "'Covariates are not supported for analysis of fully observed phenotypes'", 'if', 'verbose', ':', 'print', '(', "'fittng iSet'", ')', 'if', 'strat', ':', 'mtSetGxE', '=', 'ISet_Strat', '(', 'Y', ',', 'Ie', ',', 'Xr', ',', 'covs', '=', 'covs', ')', 'RV', '=', '{', '}', 'RV', '[', "'null'", ']', '=', 'mtSetGxE', '.', 'fitNull', '(', ')', 'RV', '[', "'rank2'", ']', '=', 'mtSetGxE', '.', 'fitFullRank', '(', ')', 'RV', '[', "'rank1'", ']', '=', 'mtSetGxE', '.', 'fitLowRank', '(', ')', 'RV', '[', "'block'", ']', '=', 'mtSetGxE', '.', 'fitBlock', '(', ')', 'RV', '[', "'var'", ']', '=', 'mtSetGxE', '.', 'getVC', '(', ')', 'else', ':', 'mtSetGxE', '=', 'ISet_Full', '(', 'Y', '=', 'Y', ',', 'S_R', '=', 'S_R', ',', 'U_R', '=', 'U_R', ',', 'Xr', '=', 'Xr', ',', 'factr', '=', 'factr', ')', 'RV', '=', '{', '}', 'RV', '[', "'null'", ']', '=', 'mtSetGxE', '.', 'fitNull', '(', ')', 'RV', '[', "'rank2'", ']', '=', 'mtSetGxE', '.', 'fitFullRank', '(', ')', 'RV', '[', "'rank1'", ']', '=', 'mtSetGxE', '.', 'fitLowRank', '(', ')', 'LLR', '=', 'RV', '[', "'rank1'", ']', '[', "'NLLAlt'", ']', '-', 'RV', '[', "'rank2'", ']', '[', "'NLLAlt'", ']', 'if', 'LLR', '<', '-', '1e-6', ':', 'RV', '[', "'rank2'", ']', '=', 'mtSetGxE', '.', 'fitFullRank', '(', 'init_method', '=', "'lr'", ')', 'try', ':', 'RV', '[', "'block'", ']', '=', 'mtSetGxE', '.', 'fitBlock', '(', ')', 'except', ':', 'try', ':', 'RV', '[', "'block'", ']', '=', 'mtSetGxE', '.', 'fitBlock', '(', 'init_method', '=', "'null'", ')', 'except', ':', 'RV', '[', "'block'", ']', '=', 'mtSetGxE', '.', 'fitBlock', '(', 'init_method', '=', "'null_no_opt'", ')', 'RV', '[', "'var'", ']', '=', 'mtSetGxE', '.', 'getVC', '(', ')', 'if', 'n_perms', '>', '0', ':', 'RVperm', '=', '{', '}', 'nulls', '=', '[', "'null'", ',', "'block'", ',', "'rank1'", ']', 'tests', '=', '[', "'mtSet'", ',', "'iSet'", ',', "'iSet-het'", ']', 'for', 'test', 'in', 'tests', ':', 'RVperm', '[', 'test', '+', "' LLR0'", ']', '=', 'sp', '.', 'zeros', '(', 'n_perms', ')', 'for', 'seed_i', 'in', 'range', '(', 'n_perms', ')', ':', 'if', 'verbose', ':', 'print', '(', "'permutation %d / %d'", '%', '(', 'seed_i', ',', 'n_perms', ')', ')', 'for', 'it', ',', 'test', 'in', 'enumerate', '(', 'tests', ')', ':', 'if', 'test', '==', "'mtSet'", ':', 'idxs', '=', 'sp', '.', 'random', '.', 'permutation', '(', 'Xr', '.', 'shape', '[', '0', ']', ')', '_Xr', '=', 'Xr', '[', 'idxs', ',', ':', ']', 'df0', '=', 'fit_iSet', '(', 'Y', ',', 'U_R', '=', 'U_R', ',', 'S_R', '=', 'S_R', ',', 'covs', '=', 'covs', ',', 'Xr', '=', '_Xr', ',', 'n_perms', '=', '0', ',', 'Ie', '=', 'Ie', ',', 'strat', '=', 'strat', ',', 'verbose', '=', 'False', ')', 'else', ':', 'Y0', '=', 'mtSetGxE', '.', '_sim_from', '(', 'set_covar', '=', 'nulls', '[', 'it', ']', ')', 'Y0', '-=', 'Y0', '.', 'mean', '(', '0', ')', 'df0', '=', 'fit_iSet', '(', 'Y0', ',', 'U_R', '=', 'U_R', ',', 'S_R', '=', 'S_R', ',', 'covs', '=', 'covs', ',', 'Xr', '=', 'Xr', ',', 'n_perms', '=', '0', ',', 'Ie', '=', 'Ie', ',', 'strat', '=', 'strat', ',', 'verbose', '=', 'False', ')', 'RVperm', '[', 'test', '+', "' LLR0'", ']', '[', 'seed_i', ']', '=', 'df0', '[', 'test', '+', "' LLR'", ']', '[', '0', ']', '# output', 'LLR_mtSet', '=', 'RV', '[', "'null'", ']', '[', "'NLL'", ']', '-', 'RV', '[', "'rank2'", ']', '[', "'NLL'", ']', 'LLR_iSet', '=', 'RV', '[', "'block'", ']', '[', "'NLL'", ']', '-', 'RV', '[', "'rank2'", ']', '[', "'NLL'", ']', 'LLR_iSet_het', '=', 'RV', '[', "'rank1'", ']', '[', "'NLL'", ']', '-', 'RV', '[', "'rank2'", ']', '[', "'NLL'", ']', 'if', 'strat', ':', 'var_keys', '=', '[', "'var_r_full'", ',', "'var_c'", ',', "'var_n'", ']', 'else', ':', 'var_keys', '=', '[', "'var_r_full'", ',', "'var_g'", ',', "'var_n'", ']', 'varT', '=', 'sp', '.', 'sum', '(', '[', 'RV', '[', "'var'", ']', '[', 'key', ']', 'for', 'key', 'in', 'var_keys', ']', ')', 'var_pers', '=', 'RV', '[', "'var'", ']', '[', "'var_r_block'", ']', '/', 'varT', 'var_resc', '=', '(', 'RV', '[', "'var'", ']', '[', "'var_r_rank1'", ']', '-', 'RV', '[', "'var'", ']', '[', "'var_r_block'", ']', ')', '/', 'varT', 'var_het', '=', '(', 'RV', '[', "'var'", ']', '[', "'var_r_full'", ']', '-', 'RV', '[', "'var'", ']', '[', "'var_r_rank1'", ']', ')', '/', 'varT', 'conv', '=', 'RV', '[', "'null'", ']', '[', "'conv'", ']', 'conv', '*=', 'RV', '[', "'block'", ']', '[', "'conv'", ']', 'conv', '*=', 'RV', '[', "'rank1'", ']', '[', "'conv'", ']', 'conv', '*=', 'RV', '[', "'rank2'", ']', '[', "'conv'", ']', 'M', '=', 'sp', '.', 'array', '(', '[', 'LLR_mtSet', ',', 'LLR_iSet', ',', 'LLR_iSet_het', ',', 'var_pers', ',', 'var_resc', ',', 'var_het', ',', 'conv', ']', ')', '.', 'T', 'columns', '=', '[', "'mtSet LLR'", ',', "'iSet LLR'", ',', "'iSet-het LLR'", ',', "'Persistent Var'", ',', "'Rescaling-GxC Var'", ',', "'Heterogeneity-GxC var'", ',', "'Converged'", ']', 'df', '=', 'pd', '.', 'DataFrame', '(', 'M', ',', 'columns', '=', 'columns', ')', 'if', 'n_perms', '>', '0', ':', 'return', 'df', ',', 'pd', '.', 'DataFrame', '(', 'RVperm', ')', 'return', 'df'] | Args:
Y: [N, P] phenotype matrix
S_R: N vector of eigenvalues of R
U_R: [N, N] eigenvector matrix of R
covs: [N, K] matrix for K covariates
Xr: [N, S] genotype data of the set component
n_perms: number of permutations to consider
Ie: N boolean context indicator
strat: if True, the implementation with stratified designs is considered | ['Args', ':', 'Y', ':', '[', 'N', 'P', ']', 'phenotype', 'matrix', 'S_R', ':', 'N', 'vector', 'of', 'eigenvalues', 'of', 'R', 'U_R', ':', '[', 'N', 'N', ']', 'eigenvector', 'matrix', 'of', 'R', 'covs', ':', '[', 'N', 'K', ']', 'matrix', 'for', 'K', 'covariates', 'Xr', ':', '[', 'N', 'S', ']', 'genotype', 'data', 'of', 'the', 'set', 'component', 'n_perms', ':', 'number', 'of', 'permutations', 'to', 'consider', 'Ie', ':', 'N', 'boolean', 'context', 'indicator', 'strat', ':', 'if', 'True', 'the', 'implementation', 'with', 'stratified', 'designs', 'is', 'considered'] | train | https://github.com/PMBio/limix-backup/blob/1e201fdb5c694d0d5506f207f3de65d8ef66146c/limix/mtSet/iset.py#L13-L102 |
1,790 | tensorflow/mesh | mesh_tensorflow/placement_mesh_impl.py | PlacementMeshImpl.receive | def receive(self, x, mesh_axis, source_pcoord):
"""Collective receive in groups.
Each group contains the processors that differ only in mesh_axis.
```python
group_size = self.shape[mesh_axis].size
```
Args:
x: a LaidOutTensor
mesh_axis: an integer
source_pcoord: a list of optional integers. Each element is either None
or an integer in [0, group_size). If source_pcoord[k] is None, then the
output for the k-th processor in each group is a zero tensor. If
source_pcoord[k] is not None, then the output for the k-th processor in
each group is equal to the input for the source_pcoord[k]-th processor
in that group.
Returns:
a LaidOutTensor
"""
x = x.to_laid_out_tensor()
shape = x.tensor_list[0].shape
dtype = x.tensor_list[0].dtype
def _collective_receive(tensor_list, device_list):
ret = []
for pcoord, device in enumerate(device_list):
with tf.device(device):
if source_pcoord[pcoord] is None:
ret.append(tf.zeros(shape, dtype))
else:
ret.append(tf.identity(tensor_list[source_pcoord[pcoord]]))
return ret
return self._collective_with_groups(
x, [mesh_axis], _collective_receive) | python | def receive(self, x, mesh_axis, source_pcoord):
"""Collective receive in groups.
Each group contains the processors that differ only in mesh_axis.
```python
group_size = self.shape[mesh_axis].size
```
Args:
x: a LaidOutTensor
mesh_axis: an integer
source_pcoord: a list of optional integers. Each element is either None
or an integer in [0, group_size). If source_pcoord[k] is None, then the
output for the k-th processor in each group is a zero tensor. If
source_pcoord[k] is not None, then the output for the k-th processor in
each group is equal to the input for the source_pcoord[k]-th processor
in that group.
Returns:
a LaidOutTensor
"""
x = x.to_laid_out_tensor()
shape = x.tensor_list[0].shape
dtype = x.tensor_list[0].dtype
def _collective_receive(tensor_list, device_list):
ret = []
for pcoord, device in enumerate(device_list):
with tf.device(device):
if source_pcoord[pcoord] is None:
ret.append(tf.zeros(shape, dtype))
else:
ret.append(tf.identity(tensor_list[source_pcoord[pcoord]]))
return ret
return self._collective_with_groups(
x, [mesh_axis], _collective_receive) | ['def', 'receive', '(', 'self', ',', 'x', ',', 'mesh_axis', ',', 'source_pcoord', ')', ':', 'x', '=', 'x', '.', 'to_laid_out_tensor', '(', ')', 'shape', '=', 'x', '.', 'tensor_list', '[', '0', ']', '.', 'shape', 'dtype', '=', 'x', '.', 'tensor_list', '[', '0', ']', '.', 'dtype', 'def', '_collective_receive', '(', 'tensor_list', ',', 'device_list', ')', ':', 'ret', '=', '[', ']', 'for', 'pcoord', ',', 'device', 'in', 'enumerate', '(', 'device_list', ')', ':', 'with', 'tf', '.', 'device', '(', 'device', ')', ':', 'if', 'source_pcoord', '[', 'pcoord', ']', 'is', 'None', ':', 'ret', '.', 'append', '(', 'tf', '.', 'zeros', '(', 'shape', ',', 'dtype', ')', ')', 'else', ':', 'ret', '.', 'append', '(', 'tf', '.', 'identity', '(', 'tensor_list', '[', 'source_pcoord', '[', 'pcoord', ']', ']', ')', ')', 'return', 'ret', 'return', 'self', '.', '_collective_with_groups', '(', 'x', ',', '[', 'mesh_axis', ']', ',', '_collective_receive', ')'] | Collective receive in groups.
Each group contains the processors that differ only in mesh_axis.
```python
group_size = self.shape[mesh_axis].size
```
Args:
x: a LaidOutTensor
mesh_axis: an integer
source_pcoord: a list of optional integers. Each element is either None
or an integer in [0, group_size). If source_pcoord[k] is None, then the
output for the k-th processor in each group is a zero tensor. If
source_pcoord[k] is not None, then the output for the k-th processor in
each group is equal to the input for the source_pcoord[k]-th processor
in that group.
Returns:
a LaidOutTensor | ['Collective', 'receive', 'in', 'groups', '.'] | train | https://github.com/tensorflow/mesh/blob/3921196e5e43302e820da0a87329f25d7e2a3016/mesh_tensorflow/placement_mesh_impl.py#L248-L283 |
1,791 | radjkarl/fancyTools | fancytools/render/GridRender.py | GridRender.add | def add(self, point, value):
"""
Assign all self.merge_values to the self._mergeMatrix
Get the position/intensity of a value
"""
# check range
for p, r in zip(point, self.range):
if p < r[0] or p > r[1]:
return
# check nan
if isnan(value):
return
refs = self.opts['references']
# for all neighbour points (1, if antialiasting=False):
for position, intensity in self.sortMethod.getPositionsIntensities(
point):
position = tuple(position)
if self.mean is not None:
old_value = self.values[position]
if not np.isnan(old_value):
anz_values = self.density[position]
mean = old_value + intensity * (
((value - old_value) / (anz_values + intensity)))
self.mean[position] = mean
if self.variance is not None:
self.variance[
position] += (abs(value - mean) / (
anz_values + intensity))
if self.mergeMethod(self.values, position, intensity, value):
for a in refs:
a.mergeMethod(a, position, intensity, value)
if self.density is not None:
self.density[position] += intensity | python | def add(self, point, value):
"""
Assign all self.merge_values to the self._mergeMatrix
Get the position/intensity of a value
"""
# check range
for p, r in zip(point, self.range):
if p < r[0] or p > r[1]:
return
# check nan
if isnan(value):
return
refs = self.opts['references']
# for all neighbour points (1, if antialiasting=False):
for position, intensity in self.sortMethod.getPositionsIntensities(
point):
position = tuple(position)
if self.mean is not None:
old_value = self.values[position]
if not np.isnan(old_value):
anz_values = self.density[position]
mean = old_value + intensity * (
((value - old_value) / (anz_values + intensity)))
self.mean[position] = mean
if self.variance is not None:
self.variance[
position] += (abs(value - mean) / (
anz_values + intensity))
if self.mergeMethod(self.values, position, intensity, value):
for a in refs:
a.mergeMethod(a, position, intensity, value)
if self.density is not None:
self.density[position] += intensity | ['def', 'add', '(', 'self', ',', 'point', ',', 'value', ')', ':', '# check range', 'for', 'p', ',', 'r', 'in', 'zip', '(', 'point', ',', 'self', '.', 'range', ')', ':', 'if', 'p', '<', 'r', '[', '0', ']', 'or', 'p', '>', 'r', '[', '1', ']', ':', 'return', '# check nan', 'if', 'isnan', '(', 'value', ')', ':', 'return', 'refs', '=', 'self', '.', 'opts', '[', "'references'", ']', '# for all neighbour points (1, if antialiasting=False):', 'for', 'position', ',', 'intensity', 'in', 'self', '.', 'sortMethod', '.', 'getPositionsIntensities', '(', 'point', ')', ':', 'position', '=', 'tuple', '(', 'position', ')', 'if', 'self', '.', 'mean', 'is', 'not', 'None', ':', 'old_value', '=', 'self', '.', 'values', '[', 'position', ']', 'if', 'not', 'np', '.', 'isnan', '(', 'old_value', ')', ':', 'anz_values', '=', 'self', '.', 'density', '[', 'position', ']', 'mean', '=', 'old_value', '+', 'intensity', '*', '(', '(', '(', 'value', '-', 'old_value', ')', '/', '(', 'anz_values', '+', 'intensity', ')', ')', ')', 'self', '.', 'mean', '[', 'position', ']', '=', 'mean', 'if', 'self', '.', 'variance', 'is', 'not', 'None', ':', 'self', '.', 'variance', '[', 'position', ']', '+=', '(', 'abs', '(', 'value', '-', 'mean', ')', '/', '(', 'anz_values', '+', 'intensity', ')', ')', 'if', 'self', '.', 'mergeMethod', '(', 'self', '.', 'values', ',', 'position', ',', 'intensity', ',', 'value', ')', ':', 'for', 'a', 'in', 'refs', ':', 'a', '.', 'mergeMethod', '(', 'a', ',', 'position', ',', 'intensity', ',', 'value', ')', 'if', 'self', '.', 'density', 'is', 'not', 'None', ':', 'self', '.', 'density', '[', 'position', ']', '+=', 'intensity'] | Assign all self.merge_values to the self._mergeMatrix
Get the position/intensity of a value | ['Assign', 'all', 'self', '.', 'merge_values', 'to', 'the', 'self', '.', '_mergeMatrix', 'Get', 'the', 'position', '/', 'intensity', 'of', 'a', 'value'] | train | https://github.com/radjkarl/fancyTools/blob/4c4d961003dc4ed6e46429a0c24f7e2bb52caa8b/fancytools/render/GridRender.py#L113-L148 |
1,792 | MolSSI-BSE/basis_set_exchange | basis_set_exchange/misc.py | expand_elements | def expand_elements(compact_el, as_str=False):
"""
Create a list of integers given a string or list of compacted elements
This is partly the opposite of compact_elements, but is more flexible.
compact_el can be a list or a string. If compact_el is a list, each element is processed individually
as a string (meaning list elements can contain commas, ranges, etc)
If compact_el is a string, it is split by commas and then each section is processed.
In all cases, element symbols (case insensitive) and Z numbers (as integers or strings)
can be used interchangeably. Ranges are also allowed in both lists and strings.
Some examples:
"H-Li,C-O,Ne" will return [1, 2, 3, 6, 7, 8, 10]
"H-N,8,Na-12" will return [1, 2, 3, 4, 5, 6, 7, 8, 11, 12]
['C', 'Al-15,S', 17, '18'] will return [6, 13, 14, 15, 16, 17, 18]
If as_str is True, the list will contain strings of the integers
(ie, the first example above will return ['1', '2', '3', '6', '7', '8', '10']
"""
# If an integer, just return it
if isinstance(compact_el, int):
if as_str is True:
return [str(compact_el)]
else:
return [compact_el]
# If compact_el is a list, make it a comma-separated string
if isinstance(compact_el, list):
compact_el = [str(x) for x in compact_el]
compact_el = [x for x in compact_el if len(x) > 0]
compact_el = ','.join(compact_el)
# Find multiple - or ,
# Also replace all whitespace with spaces
compact_el = re.sub(r',+', ',', compact_el)
compact_el = re.sub(r'-+', '-', compact_el)
compact_el = re.sub(r'\s+', '', compact_el)
# Find starting with or ending with comma and strip them
compact_el = compact_el.strip(',')
# Check if I was passed an empty string or list
if len(compact_el) == 0:
return []
# Find some erroneous patterns
# -, and ,-
if '-,' in compact_el:
raise RuntimeError("Malformed element string")
if ',-' in compact_el:
raise RuntimeError("Malformed element string")
# Strings ends or begins with -
if compact_el.startswith('-') or compact_el.endswith('-'):
raise RuntimeError("Malformed element string")
# x-y-z
if re.search(r'\w+-\w+-\w+', compact_el):
raise RuntimeError("Malformed element string")
# Split on commas
tmp_list = compact_el.split(',')
# Now go over each one and replace elements with ints
el_list = []
for el in tmp_list:
if not '-' in el:
el_list.append(_Z_from_str(el))
else:
begin, end = el.split('-')
begin = _Z_from_str(begin)
end = _Z_from_str(end)
el_list.extend(list(range(begin, end + 1)))
if as_str is True:
return [str(x) for x in el_list]
else:
return el_list | python | def expand_elements(compact_el, as_str=False):
"""
Create a list of integers given a string or list of compacted elements
This is partly the opposite of compact_elements, but is more flexible.
compact_el can be a list or a string. If compact_el is a list, each element is processed individually
as a string (meaning list elements can contain commas, ranges, etc)
If compact_el is a string, it is split by commas and then each section is processed.
In all cases, element symbols (case insensitive) and Z numbers (as integers or strings)
can be used interchangeably. Ranges are also allowed in both lists and strings.
Some examples:
"H-Li,C-O,Ne" will return [1, 2, 3, 6, 7, 8, 10]
"H-N,8,Na-12" will return [1, 2, 3, 4, 5, 6, 7, 8, 11, 12]
['C', 'Al-15,S', 17, '18'] will return [6, 13, 14, 15, 16, 17, 18]
If as_str is True, the list will contain strings of the integers
(ie, the first example above will return ['1', '2', '3', '6', '7', '8', '10']
"""
# If an integer, just return it
if isinstance(compact_el, int):
if as_str is True:
return [str(compact_el)]
else:
return [compact_el]
# If compact_el is a list, make it a comma-separated string
if isinstance(compact_el, list):
compact_el = [str(x) for x in compact_el]
compact_el = [x for x in compact_el if len(x) > 0]
compact_el = ','.join(compact_el)
# Find multiple - or ,
# Also replace all whitespace with spaces
compact_el = re.sub(r',+', ',', compact_el)
compact_el = re.sub(r'-+', '-', compact_el)
compact_el = re.sub(r'\s+', '', compact_el)
# Find starting with or ending with comma and strip them
compact_el = compact_el.strip(',')
# Check if I was passed an empty string or list
if len(compact_el) == 0:
return []
# Find some erroneous patterns
# -, and ,-
if '-,' in compact_el:
raise RuntimeError("Malformed element string")
if ',-' in compact_el:
raise RuntimeError("Malformed element string")
# Strings ends or begins with -
if compact_el.startswith('-') or compact_el.endswith('-'):
raise RuntimeError("Malformed element string")
# x-y-z
if re.search(r'\w+-\w+-\w+', compact_el):
raise RuntimeError("Malformed element string")
# Split on commas
tmp_list = compact_el.split(',')
# Now go over each one and replace elements with ints
el_list = []
for el in tmp_list:
if not '-' in el:
el_list.append(_Z_from_str(el))
else:
begin, end = el.split('-')
begin = _Z_from_str(begin)
end = _Z_from_str(end)
el_list.extend(list(range(begin, end + 1)))
if as_str is True:
return [str(x) for x in el_list]
else:
return el_list | ['def', 'expand_elements', '(', 'compact_el', ',', 'as_str', '=', 'False', ')', ':', '# If an integer, just return it', 'if', 'isinstance', '(', 'compact_el', ',', 'int', ')', ':', 'if', 'as_str', 'is', 'True', ':', 'return', '[', 'str', '(', 'compact_el', ')', ']', 'else', ':', 'return', '[', 'compact_el', ']', '# If compact_el is a list, make it a comma-separated string', 'if', 'isinstance', '(', 'compact_el', ',', 'list', ')', ':', 'compact_el', '=', '[', 'str', '(', 'x', ')', 'for', 'x', 'in', 'compact_el', ']', 'compact_el', '=', '[', 'x', 'for', 'x', 'in', 'compact_el', 'if', 'len', '(', 'x', ')', '>', '0', ']', 'compact_el', '=', "','", '.', 'join', '(', 'compact_el', ')', '# Find multiple - or ,', '# Also replace all whitespace with spaces', 'compact_el', '=', 're', '.', 'sub', '(', "r',+'", ',', "','", ',', 'compact_el', ')', 'compact_el', '=', 're', '.', 'sub', '(', "r'-+'", ',', "'-'", ',', 'compact_el', ')', 'compact_el', '=', 're', '.', 'sub', '(', "r'\\s+'", ',', "''", ',', 'compact_el', ')', '# Find starting with or ending with comma and strip them', 'compact_el', '=', 'compact_el', '.', 'strip', '(', "','", ')', '# Check if I was passed an empty string or list', 'if', 'len', '(', 'compact_el', ')', '==', '0', ':', 'return', '[', ']', '# Find some erroneous patterns', '# -, and ,-', 'if', "'-,'", 'in', 'compact_el', ':', 'raise', 'RuntimeError', '(', '"Malformed element string"', ')', 'if', "',-'", 'in', 'compact_el', ':', 'raise', 'RuntimeError', '(', '"Malformed element string"', ')', '# Strings ends or begins with -', 'if', 'compact_el', '.', 'startswith', '(', "'-'", ')', 'or', 'compact_el', '.', 'endswith', '(', "'-'", ')', ':', 'raise', 'RuntimeError', '(', '"Malformed element string"', ')', '# x-y-z', 'if', 're', '.', 'search', '(', "r'\\w+-\\w+-\\w+'", ',', 'compact_el', ')', ':', 'raise', 'RuntimeError', '(', '"Malformed element string"', ')', '# Split on commas', 'tmp_list', '=', 'compact_el', '.', 'split', '(', "','", ')', '# Now go over each one and replace elements with ints', 'el_list', '=', '[', ']', 'for', 'el', 'in', 'tmp_list', ':', 'if', 'not', "'-'", 'in', 'el', ':', 'el_list', '.', 'append', '(', '_Z_from_str', '(', 'el', ')', ')', 'else', ':', 'begin', ',', 'end', '=', 'el', '.', 'split', '(', "'-'", ')', 'begin', '=', '_Z_from_str', '(', 'begin', ')', 'end', '=', '_Z_from_str', '(', 'end', ')', 'el_list', '.', 'extend', '(', 'list', '(', 'range', '(', 'begin', ',', 'end', '+', '1', ')', ')', ')', 'if', 'as_str', 'is', 'True', ':', 'return', '[', 'str', '(', 'x', ')', 'for', 'x', 'in', 'el_list', ']', 'else', ':', 'return', 'el_list'] | Create a list of integers given a string or list of compacted elements
This is partly the opposite of compact_elements, but is more flexible.
compact_el can be a list or a string. If compact_el is a list, each element is processed individually
as a string (meaning list elements can contain commas, ranges, etc)
If compact_el is a string, it is split by commas and then each section is processed.
In all cases, element symbols (case insensitive) and Z numbers (as integers or strings)
can be used interchangeably. Ranges are also allowed in both lists and strings.
Some examples:
"H-Li,C-O,Ne" will return [1, 2, 3, 6, 7, 8, 10]
"H-N,8,Na-12" will return [1, 2, 3, 4, 5, 6, 7, 8, 11, 12]
['C', 'Al-15,S', 17, '18'] will return [6, 13, 14, 15, 16, 17, 18]
If as_str is True, the list will contain strings of the integers
(ie, the first example above will return ['1', '2', '3', '6', '7', '8', '10'] | ['Create', 'a', 'list', 'of', 'integers', 'given', 'a', 'string', 'or', 'list', 'of', 'compacted', 'elements'] | train | https://github.com/MolSSI-BSE/basis_set_exchange/blob/e79110aaeb65f392ed5032420322dee3336948f7/basis_set_exchange/misc.py#L110-L190 |
1,793 | squaresLab/BugZoo | bugzoo/exceptions.py | BugZooException.from_message_and_data | def from_message_and_data(cls,
message: str,
data: Dict[str, Any]
) -> 'BugZooException':
"""
Reproduces an exception from the message and data contained in its
dictionary-based description.
"""
return cls(message) | python | def from_message_and_data(cls,
message: str,
data: Dict[str, Any]
) -> 'BugZooException':
"""
Reproduces an exception from the message and data contained in its
dictionary-based description.
"""
return cls(message) | ['def', 'from_message_and_data', '(', 'cls', ',', 'message', ':', 'str', ',', 'data', ':', 'Dict', '[', 'str', ',', 'Any', ']', ')', '->', "'BugZooException'", ':', 'return', 'cls', '(', 'message', ')'] | Reproduces an exception from the message and data contained in its
dictionary-based description. | ['Reproduces', 'an', 'exception', 'from', 'the', 'message', 'and', 'data', 'contained', 'in', 'its', 'dictionary', '-', 'based', 'description', '.'] | train | https://github.com/squaresLab/BugZoo/blob/68664f1977e85b37a78604f7c570382ffae1fa3b/bugzoo/exceptions.py#L66-L74 |
1,794 | bcbio/bcbio-nextgen | bcbio/structural/metasv.py | run | def run(items):
"""Run MetaSV if we have enough supported callers, adding output to the set of calls.
"""
assert len(items) == 1, "Expect one input to MetaSV ensemble calling"
data = items[0]
work_dir = _sv_workdir(data)
out_file = os.path.join(work_dir, "variants.vcf.gz")
cmd = _get_cmd() + ["--sample", dd.get_sample_name(data), "--reference", dd.get_ref_file(data),
"--bam", dd.get_align_bam(data), "--outdir", work_dir]
methods = []
for call in data.get("sv", []):
vcf_file = call.get("vcf_file", call.get("vrn_file", None))
if call["variantcaller"] in SUPPORTED and call["variantcaller"] not in methods and vcf_file is not None:
methods.append(call["variantcaller"])
cmd += ["--%s_vcf" % call["variantcaller"], vcf_file]
if len(methods) >= MIN_CALLERS:
if not utils.file_exists(out_file):
tx_work_dir = utils.safe_makedir(os.path.join(work_dir, "raw"))
ins_stats = shared.calc_paired_insert_stats_save(dd.get_align_bam(data),
os.path.join(tx_work_dir, "insert-stats.yaml"))
cmd += ["--workdir", tx_work_dir, "--num_threads", str(dd.get_num_cores(data))]
cmd += ["--spades", utils.which("spades.py"), "--age", utils.which("age_align")]
cmd += ["--assembly_max_tools=1", "--assembly_pad=500"]
cmd += ["--boost_sc", "--isize_mean", ins_stats["mean"], "--isize_sd", ins_stats["std"]]
do.run(cmd, "Combine variant calls with MetaSV")
filters = ("(NUM_SVTOOLS = 1 && ABS(SVLEN)>50000) || "
"(NUM_SVTOOLS = 1 && ABS(SVLEN)<4000 && BA_FLANK_PERCENT>80) || "
"(NUM_SVTOOLS = 1 && ABS(SVLEN)<4000 && BA_NUM_GOOD_REC=0) || "
"(ABS(SVLEN)<4000 && BA_NUM_GOOD_REC>2)")
filter_file = vfilter.cutoff_w_expression(out_file, filters,
data, name="ReassemblyStats", limit_regions=None)
effects_vcf, _ = effects.add_to_vcf(filter_file, data, "snpeff")
data["sv"].append({"variantcaller": "metasv",
"vrn_file": effects_vcf or filter_file})
return [data] | python | def run(items):
"""Run MetaSV if we have enough supported callers, adding output to the set of calls.
"""
assert len(items) == 1, "Expect one input to MetaSV ensemble calling"
data = items[0]
work_dir = _sv_workdir(data)
out_file = os.path.join(work_dir, "variants.vcf.gz")
cmd = _get_cmd() + ["--sample", dd.get_sample_name(data), "--reference", dd.get_ref_file(data),
"--bam", dd.get_align_bam(data), "--outdir", work_dir]
methods = []
for call in data.get("sv", []):
vcf_file = call.get("vcf_file", call.get("vrn_file", None))
if call["variantcaller"] in SUPPORTED and call["variantcaller"] not in methods and vcf_file is not None:
methods.append(call["variantcaller"])
cmd += ["--%s_vcf" % call["variantcaller"], vcf_file]
if len(methods) >= MIN_CALLERS:
if not utils.file_exists(out_file):
tx_work_dir = utils.safe_makedir(os.path.join(work_dir, "raw"))
ins_stats = shared.calc_paired_insert_stats_save(dd.get_align_bam(data),
os.path.join(tx_work_dir, "insert-stats.yaml"))
cmd += ["--workdir", tx_work_dir, "--num_threads", str(dd.get_num_cores(data))]
cmd += ["--spades", utils.which("spades.py"), "--age", utils.which("age_align")]
cmd += ["--assembly_max_tools=1", "--assembly_pad=500"]
cmd += ["--boost_sc", "--isize_mean", ins_stats["mean"], "--isize_sd", ins_stats["std"]]
do.run(cmd, "Combine variant calls with MetaSV")
filters = ("(NUM_SVTOOLS = 1 && ABS(SVLEN)>50000) || "
"(NUM_SVTOOLS = 1 && ABS(SVLEN)<4000 && BA_FLANK_PERCENT>80) || "
"(NUM_SVTOOLS = 1 && ABS(SVLEN)<4000 && BA_NUM_GOOD_REC=0) || "
"(ABS(SVLEN)<4000 && BA_NUM_GOOD_REC>2)")
filter_file = vfilter.cutoff_w_expression(out_file, filters,
data, name="ReassemblyStats", limit_regions=None)
effects_vcf, _ = effects.add_to_vcf(filter_file, data, "snpeff")
data["sv"].append({"variantcaller": "metasv",
"vrn_file": effects_vcf or filter_file})
return [data] | ['def', 'run', '(', 'items', ')', ':', 'assert', 'len', '(', 'items', ')', '==', '1', ',', '"Expect one input to MetaSV ensemble calling"', 'data', '=', 'items', '[', '0', ']', 'work_dir', '=', '_sv_workdir', '(', 'data', ')', 'out_file', '=', 'os', '.', 'path', '.', 'join', '(', 'work_dir', ',', '"variants.vcf.gz"', ')', 'cmd', '=', '_get_cmd', '(', ')', '+', '[', '"--sample"', ',', 'dd', '.', 'get_sample_name', '(', 'data', ')', ',', '"--reference"', ',', 'dd', '.', 'get_ref_file', '(', 'data', ')', ',', '"--bam"', ',', 'dd', '.', 'get_align_bam', '(', 'data', ')', ',', '"--outdir"', ',', 'work_dir', ']', 'methods', '=', '[', ']', 'for', 'call', 'in', 'data', '.', 'get', '(', '"sv"', ',', '[', ']', ')', ':', 'vcf_file', '=', 'call', '.', 'get', '(', '"vcf_file"', ',', 'call', '.', 'get', '(', '"vrn_file"', ',', 'None', ')', ')', 'if', 'call', '[', '"variantcaller"', ']', 'in', 'SUPPORTED', 'and', 'call', '[', '"variantcaller"', ']', 'not', 'in', 'methods', 'and', 'vcf_file', 'is', 'not', 'None', ':', 'methods', '.', 'append', '(', 'call', '[', '"variantcaller"', ']', ')', 'cmd', '+=', '[', '"--%s_vcf"', '%', 'call', '[', '"variantcaller"', ']', ',', 'vcf_file', ']', 'if', 'len', '(', 'methods', ')', '>=', 'MIN_CALLERS', ':', 'if', 'not', 'utils', '.', 'file_exists', '(', 'out_file', ')', ':', 'tx_work_dir', '=', 'utils', '.', 'safe_makedir', '(', 'os', '.', 'path', '.', 'join', '(', 'work_dir', ',', '"raw"', ')', ')', 'ins_stats', '=', 'shared', '.', 'calc_paired_insert_stats_save', '(', 'dd', '.', 'get_align_bam', '(', 'data', ')', ',', 'os', '.', 'path', '.', 'join', '(', 'tx_work_dir', ',', '"insert-stats.yaml"', ')', ')', 'cmd', '+=', '[', '"--workdir"', ',', 'tx_work_dir', ',', '"--num_threads"', ',', 'str', '(', 'dd', '.', 'get_num_cores', '(', 'data', ')', ')', ']', 'cmd', '+=', '[', '"--spades"', ',', 'utils', '.', 'which', '(', '"spades.py"', ')', ',', '"--age"', ',', 'utils', '.', 'which', '(', '"age_align"', ')', ']', 'cmd', '+=', '[', '"--assembly_max_tools=1"', ',', '"--assembly_pad=500"', ']', 'cmd', '+=', '[', '"--boost_sc"', ',', '"--isize_mean"', ',', 'ins_stats', '[', '"mean"', ']', ',', '"--isize_sd"', ',', 'ins_stats', '[', '"std"', ']', ']', 'do', '.', 'run', '(', 'cmd', ',', '"Combine variant calls with MetaSV"', ')', 'filters', '=', '(', '"(NUM_SVTOOLS = 1 && ABS(SVLEN)>50000) || "', '"(NUM_SVTOOLS = 1 && ABS(SVLEN)<4000 && BA_FLANK_PERCENT>80) || "', '"(NUM_SVTOOLS = 1 && ABS(SVLEN)<4000 && BA_NUM_GOOD_REC=0) || "', '"(ABS(SVLEN)<4000 && BA_NUM_GOOD_REC>2)"', ')', 'filter_file', '=', 'vfilter', '.', 'cutoff_w_expression', '(', 'out_file', ',', 'filters', ',', 'data', ',', 'name', '=', '"ReassemblyStats"', ',', 'limit_regions', '=', 'None', ')', 'effects_vcf', ',', '_', '=', 'effects', '.', 'add_to_vcf', '(', 'filter_file', ',', 'data', ',', '"snpeff"', ')', 'data', '[', '"sv"', ']', '.', 'append', '(', '{', '"variantcaller"', ':', '"metasv"', ',', '"vrn_file"', ':', 'effects_vcf', 'or', 'filter_file', '}', ')', 'return', '[', 'data', ']'] | Run MetaSV if we have enough supported callers, adding output to the set of calls. | ['Run', 'MetaSV', 'if', 'we', 'have', 'enough', 'supported', 'callers', 'adding', 'output', 'to', 'the', 'set', 'of', 'calls', '.'] | train | https://github.com/bcbio/bcbio-nextgen/blob/6a9348c0054ccd5baffd22f1bb7d0422f6978b20/bcbio/structural/metasv.py#L18-L52 |
1,795 | SetBased/py-stratum | pystratum/Constants.py | Constants._read_configuration_file | def _read_configuration_file(self, config_filename):
"""
Reads parameters from the configuration file.
:param str config_filename: The name of the configuration file.
"""
config = configparser.ConfigParser()
config.read(config_filename)
self._constants_filename = config.get('constants', 'columns')
self._prefix = config.get('constants', 'prefix')
self._class_name = config.get('constants', 'class') | python | def _read_configuration_file(self, config_filename):
"""
Reads parameters from the configuration file.
:param str config_filename: The name of the configuration file.
"""
config = configparser.ConfigParser()
config.read(config_filename)
self._constants_filename = config.get('constants', 'columns')
self._prefix = config.get('constants', 'prefix')
self._class_name = config.get('constants', 'class') | ['def', '_read_configuration_file', '(', 'self', ',', 'config_filename', ')', ':', 'config', '=', 'configparser', '.', 'ConfigParser', '(', ')', 'config', '.', 'read', '(', 'config_filename', ')', 'self', '.', '_constants_filename', '=', 'config', '.', 'get', '(', "'constants'", ',', "'columns'", ')', 'self', '.', '_prefix', '=', 'config', '.', 'get', '(', "'constants'", ',', "'prefix'", ')', 'self', '.', '_class_name', '=', 'config', '.', 'get', '(', "'constants'", ',', "'class'", ')'] | Reads parameters from the configuration file.
:param str config_filename: The name of the configuration file. | ['Reads', 'parameters', 'from', 'the', 'configuration', 'file', '.'] | train | https://github.com/SetBased/py-stratum/blob/7c5ffaa2fdd03f865832a5190b5897ff2c0e3155/pystratum/Constants.py#L131-L142 |
1,796 | fjwCode/cerium | cerium/androiddriver.py | AndroidDriver.swipe_up | def swipe_up(self, width: int = 1080, length: int = 1920) -> None:
'''Swipe up.'''
self.swipe(0.5*width, 0.8*length, 0.5*width, 0.2*length) | python | def swipe_up(self, width: int = 1080, length: int = 1920) -> None:
'''Swipe up.'''
self.swipe(0.5*width, 0.8*length, 0.5*width, 0.2*length) | ['def', 'swipe_up', '(', 'self', ',', 'width', ':', 'int', '=', '1080', ',', 'length', ':', 'int', '=', '1920', ')', '->', 'None', ':', 'self', '.', 'swipe', '(', '0.5', '*', 'width', ',', '0.8', '*', 'length', ',', '0.5', '*', 'width', ',', '0.2', '*', 'length', ')'] | Swipe up. | ['Swipe', 'up', '.'] | train | https://github.com/fjwCode/cerium/blob/f6e06e0dcf83a0bc924828e9d6cb81383ed2364f/cerium/androiddriver.py#L825-L827 |
1,797 | PrefPy/prefpy | prefpy/gmmra.py | GMMPLAggregator._bot | def _bot(self, k):
"""
Description:
Bottom k breaking
Parameters:
k: the number of alternatives to break from lowest rank
"""
if k < 2:
raise ValueError("k smaller than 2")
G = np.ones((self.m, self.m))
np.fill_diagonal(G, 0)
for i in range(self.m):
for j in range(self.m):
if i == j:
continue
if i <= k and j <= k:
G[i][j] = 0
return G | python | def _bot(self, k):
"""
Description:
Bottom k breaking
Parameters:
k: the number of alternatives to break from lowest rank
"""
if k < 2:
raise ValueError("k smaller than 2")
G = np.ones((self.m, self.m))
np.fill_diagonal(G, 0)
for i in range(self.m):
for j in range(self.m):
if i == j:
continue
if i <= k and j <= k:
G[i][j] = 0
return G | ['def', '_bot', '(', 'self', ',', 'k', ')', ':', 'if', 'k', '<', '2', ':', 'raise', 'ValueError', '(', '"k smaller than 2"', ')', 'G', '=', 'np', '.', 'ones', '(', '(', 'self', '.', 'm', ',', 'self', '.', 'm', ')', ')', 'np', '.', 'fill_diagonal', '(', 'G', ',', '0', ')', 'for', 'i', 'in', 'range', '(', 'self', '.', 'm', ')', ':', 'for', 'j', 'in', 'range', '(', 'self', '.', 'm', ')', ':', 'if', 'i', '==', 'j', ':', 'continue', 'if', 'i', '<=', 'k', 'and', 'j', '<=', 'k', ':', 'G', '[', 'i', ']', '[', 'j', ']', '=', '0', 'return', 'G'] | Description:
Bottom k breaking
Parameters:
k: the number of alternatives to break from lowest rank | ['Description', ':', 'Bottom', 'k', 'breaking', 'Parameters', ':', 'k', ':', 'the', 'number', 'of', 'alternatives', 'to', 'break', 'from', 'lowest', 'rank'] | train | https://github.com/PrefPy/prefpy/blob/f395ba3782f05684fa5de0cece387a6da9391d02/prefpy/gmmra.py#L47-L64 |
1,798 | yhat/pandasql | pandasql/sqldf.py | get_outer_frame_variables | def get_outer_frame_variables():
""" Get a dict of local and global variables of the first outer frame from another file. """
cur_filename = inspect.getframeinfo(inspect.currentframe()).filename
outer_frame = next(f
for f in inspect.getouterframes(inspect.currentframe())
if f.filename != cur_filename)
variables = {}
variables.update(outer_frame.frame.f_globals)
variables.update(outer_frame.frame.f_locals)
return variables | python | def get_outer_frame_variables():
""" Get a dict of local and global variables of the first outer frame from another file. """
cur_filename = inspect.getframeinfo(inspect.currentframe()).filename
outer_frame = next(f
for f in inspect.getouterframes(inspect.currentframe())
if f.filename != cur_filename)
variables = {}
variables.update(outer_frame.frame.f_globals)
variables.update(outer_frame.frame.f_locals)
return variables | ['def', 'get_outer_frame_variables', '(', ')', ':', 'cur_filename', '=', 'inspect', '.', 'getframeinfo', '(', 'inspect', '.', 'currentframe', '(', ')', ')', '.', 'filename', 'outer_frame', '=', 'next', '(', 'f', 'for', 'f', 'in', 'inspect', '.', 'getouterframes', '(', 'inspect', '.', 'currentframe', '(', ')', ')', 'if', 'f', '.', 'filename', '!=', 'cur_filename', ')', 'variables', '=', '{', '}', 'variables', '.', 'update', '(', 'outer_frame', '.', 'frame', '.', 'f_globals', ')', 'variables', '.', 'update', '(', 'outer_frame', '.', 'frame', '.', 'f_locals', ')', 'return', 'variables'] | Get a dict of local and global variables of the first outer frame from another file. | ['Get', 'a', 'dict', 'of', 'local', 'and', 'global', 'variables', 'of', 'the', 'first', 'outer', 'frame', 'from', 'another', 'file', '.'] | train | https://github.com/yhat/pandasql/blob/e799c6f53be9653e8998a25adb5e2f1643442699/pandasql/sqldf.py#L98-L107 |
1,799 | blockstack/blockstack-core | blockstack/lib/atlas.py | atlas_peer_download_zonefile_inventory | def atlas_peer_download_zonefile_inventory( my_hostport, peer_hostport, maxlen, bit_offset=0, timeout=None, peer_table={} ):
"""
Get the zonefile inventory from the remote peer
Start from the given bit_offset
NOTE: this doesn't update the peer table health by default;
you'll have to explicitly pass in a peer table (i.e. setting
to {} ensures that nothing happens).
"""
if timeout is None:
timeout = atlas_inv_timeout()
interval = 524288 # number of bits in 64KB
peer_inv = ""
log.debug("Download zonefile inventory %s-%s from %s" % (bit_offset, maxlen, peer_hostport))
if bit_offset > maxlen:
# synced already
return peer_inv
for offset in xrange( bit_offset, maxlen, interval):
next_inv = atlas_peer_get_zonefile_inventory_range( my_hostport, peer_hostport, offset, interval, timeout=timeout, peer_table=peer_table )
if next_inv is None:
# partial failure
log.debug("Failed to sync inventory for %s from %s to %s" % (peer_hostport, offset, offset+interval))
break
peer_inv += next_inv
if len(next_inv) < interval:
# end-of-interval
break
return peer_inv | python | def atlas_peer_download_zonefile_inventory( my_hostport, peer_hostport, maxlen, bit_offset=0, timeout=None, peer_table={} ):
"""
Get the zonefile inventory from the remote peer
Start from the given bit_offset
NOTE: this doesn't update the peer table health by default;
you'll have to explicitly pass in a peer table (i.e. setting
to {} ensures that nothing happens).
"""
if timeout is None:
timeout = atlas_inv_timeout()
interval = 524288 # number of bits in 64KB
peer_inv = ""
log.debug("Download zonefile inventory %s-%s from %s" % (bit_offset, maxlen, peer_hostport))
if bit_offset > maxlen:
# synced already
return peer_inv
for offset in xrange( bit_offset, maxlen, interval):
next_inv = atlas_peer_get_zonefile_inventory_range( my_hostport, peer_hostport, offset, interval, timeout=timeout, peer_table=peer_table )
if next_inv is None:
# partial failure
log.debug("Failed to sync inventory for %s from %s to %s" % (peer_hostport, offset, offset+interval))
break
peer_inv += next_inv
if len(next_inv) < interval:
# end-of-interval
break
return peer_inv | ['def', 'atlas_peer_download_zonefile_inventory', '(', 'my_hostport', ',', 'peer_hostport', ',', 'maxlen', ',', 'bit_offset', '=', '0', ',', 'timeout', '=', 'None', ',', 'peer_table', '=', '{', '}', ')', ':', 'if', 'timeout', 'is', 'None', ':', 'timeout', '=', 'atlas_inv_timeout', '(', ')', 'interval', '=', '524288', '# number of bits in 64KB', 'peer_inv', '=', '""', 'log', '.', 'debug', '(', '"Download zonefile inventory %s-%s from %s"', '%', '(', 'bit_offset', ',', 'maxlen', ',', 'peer_hostport', ')', ')', 'if', 'bit_offset', '>', 'maxlen', ':', '# synced already', 'return', 'peer_inv', 'for', 'offset', 'in', 'xrange', '(', 'bit_offset', ',', 'maxlen', ',', 'interval', ')', ':', 'next_inv', '=', 'atlas_peer_get_zonefile_inventory_range', '(', 'my_hostport', ',', 'peer_hostport', ',', 'offset', ',', 'interval', ',', 'timeout', '=', 'timeout', ',', 'peer_table', '=', 'peer_table', ')', 'if', 'next_inv', 'is', 'None', ':', '# partial failure', 'log', '.', 'debug', '(', '"Failed to sync inventory for %s from %s to %s"', '%', '(', 'peer_hostport', ',', 'offset', ',', 'offset', '+', 'interval', ')', ')', 'break', 'peer_inv', '+=', 'next_inv', 'if', 'len', '(', 'next_inv', ')', '<', 'interval', ':', '# end-of-interval', 'break', 'return', 'peer_inv'] | Get the zonefile inventory from the remote peer
Start from the given bit_offset
NOTE: this doesn't update the peer table health by default;
you'll have to explicitly pass in a peer table (i.e. setting
to {} ensures that nothing happens). | ['Get', 'the', 'zonefile', 'inventory', 'from', 'the', 'remote', 'peer', 'Start', 'from', 'the', 'given', 'bit_offset'] | train | https://github.com/blockstack/blockstack-core/blob/1dcfdd39b152d29ce13e736a6a1a0981401a0505/blockstack/lib/atlas.py#L1993-L2027 |
Subsets and Splits