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return (RawPixelsStore) this.ctx.getBean("rawPixelsStore"); | return getServiceByClass(RawPixelsStore.class); | public RawPixelsStore createRawPixelsStore(){ return (RawPixelsStore) this.ctx.getBean("rawPixelsStore"); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/dc8dde051a1e2b716514b3964c9222ce006ebea9/ServiceFactory.java/clean/components/common/src/ome/system/ServiceFactory.java |
return (RenderingEngine) this.ctx.getBean("renderService"); | return getServiceByClass(RenderingEngine.class); | public RenderingEngine createRenderingEngine(){ return (RenderingEngine) this.ctx.getBean("renderService"); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/dc8dde051a1e2b716514b3964c9222ce006ebea9/ServiceFactory.java/clean/components/common/src/ome/system/ServiceFactory.java |
return (IAdmin) this.ctx.getBean("adminService"); | return getServiceByClass(IAdmin.class); | public IAdmin getAdminService(){ return (IAdmin) this.ctx.getBean("adminService"); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/dc8dde051a1e2b716514b3964c9222ce006ebea9/ServiceFactory.java/clean/components/common/src/ome/system/ServiceFactory.java |
return (IAnalysis) this.ctx.getBean("analysisService"); | return getServiceByClass(IAnalysis.class); | public IAnalysis getAnalysisService(){ return (IAnalysis) this.ctx.getBean("analysisService"); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/dc8dde051a1e2b716514b3964c9222ce006ebea9/ServiceFactory.java/clean/components/common/src/ome/system/ServiceFactory.java |
return (IPixels) this.ctx.getBean("pixelsService"); | return getServiceByClass(IPixels.class); | public IPixels getPixelsService(){ return (IPixels) this.ctx.getBean("pixelsService"); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/dc8dde051a1e2b716514b3964c9222ce006ebea9/ServiceFactory.java/clean/components/common/src/ome/system/ServiceFactory.java |
return (IPojos) this.ctx.getBean("pojosService"); | return getServiceByClass(IPojos.class); | public IPojos getPojosService(){ return (IPojos) this.ctx.getBean("pojosService"); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/dc8dde051a1e2b716514b3964c9222ce006ebea9/ServiceFactory.java/clean/components/common/src/ome/system/ServiceFactory.java |
return (IQuery) this.ctx.getBean("queryService"); | return getServiceByClass(IQuery.class); | public IQuery getQueryService(){ return (IQuery) this.ctx.getBean("queryService"); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/dc8dde051a1e2b716514b3964c9222ce006ebea9/ServiceFactory.java/clean/components/common/src/ome/system/ServiceFactory.java |
return (ITypes) this.ctx.getBean("typesService"); | return getServiceByClass(ITypes.class); | public ITypes getTypesService(){ return (ITypes) this.ctx.getBean("typesService"); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/dc8dde051a1e2b716514b3964c9222ce006ebea9/ServiceFactory.java/clean/components/common/src/ome/system/ServiceFactory.java |
return (IUpdate) this.ctx.getBean("updateService"); | return getServiceByClass(IUpdate.class); | public IUpdate getUpdateService(){ return (IUpdate) this.ctx.getBean("updateService"); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/dc8dde051a1e2b716514b3964c9222ce006ebea9/ServiceFactory.java/clean/components/common/src/ome/system/ServiceFactory.java |
int firstDollarSign = getName().indexOf('$'); | int firstDollarSign = getBaseName().indexOf('$'); | public String getSourceFileName() { String baseName; if (sourceFileName != null) baseName = sourceFileName; else { int firstDollarSign = getName().indexOf('$'); if (firstDollarSign == -1) baseName = getBaseName() + ".java"; else baseName = getBaseName().substring(0, firstDollarSign - 1) + ".java"; } String packageName = getPackageName(); if (packageName == null) return baseName; return getPackageName().replace('.', '/') + '/' + baseName; } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/c61ea640346b4696d424218673f964aee47e9919/ClassData.java/clean/cobertura/src/net/sourceforge/cobertura/coveragedata/ClassData.java |
baseName = getBaseName().substring(0, firstDollarSign - 1) + ".java"; | baseName = getBaseName().substring(0, firstDollarSign) + ".java"; | public String getSourceFileName() { String baseName; if (sourceFileName != null) baseName = sourceFileName; else { int firstDollarSign = getName().indexOf('$'); if (firstDollarSign == -1) baseName = getBaseName() + ".java"; else baseName = getBaseName().substring(0, firstDollarSign - 1) + ".java"; } String packageName = getPackageName(); if (packageName == null) return baseName; return getPackageName().replace('.', '/') + '/' + baseName; } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/c61ea640346b4696d424218673f964aee47e9919/ClassData.java/clean/cobertura/src/net/sourceforge/cobertura/coveragedata/ClassData.java |
System.err.println("FOCUS GAINED"); | public void focusGained(FocusEvent event) { BrowserManager manager = env.getBrowserManager(); manager.setActiveBrowser(wrapper); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e83036080b3a8ade884eca150f3f3c2004b556c9/CommonFocusAdapter.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/ui/CommonFocusAdapter.java |
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setUI(uiDelegate); | public ColouredButton(String text, Color color) { super(text); if (color == null) throw new IllegalArgumentException("No color."); setBackground(color); uiDelegate = new ColouredButtonUI(this, color); setUI(uiDelegate); setRolloverEnabled(false); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/406af898c8201f57e22420d70ddf032867b5cecd/ColouredButton.java/buggy/SRC/org/openmicroscopy/shoola/util/ui/ColouredButton.java |
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return Collections.EMPTY_LIST; | return EMPTY_LIST; | public List childNodes() { return Collections.EMPTY_LIST; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/b1293eda8454686e846e2a9837b348e2983bb423/PostExeNode.java/buggy/src/org/jruby/ast/PostExeNode.java |
tSelectionField.setEditable(model.getMaxZ() != 0); | zSelectionField.setEditable(model.getMaxZ() != 0); | void onStateChange(boolean b) { if (b) { tSelectionField.setEditable(model.getMaxT() != 0); tSelectionField.setEditable(model.getMaxZ() != 0); } else { tSelectionField.setEditable(b); zSelectionField.setEditable(b); } } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/efbe40516608a0fede32392ba0f15704dfc20a65/ToolBar.java/buggy/SRC/org/openmicroscopy/shoola/agents/imviewer/view/ToolBar.java |
if (factor != -1) | if (factor != -1) | public void setZoomFactor(double factor) { if (factor != -1) { if (factor > ZoomAction.MAX_ZOOM_FACTOR || factor < ZoomAction.MIN_ZOOM_FACTOR) throw new IllegalArgumentException("The zoom factor is value " + "between "+ZoomAction.MIN_ZOOM_FACTOR+" and "+ ZoomAction.MAX_ZOOM_FACTOR); } else { int width = model.getRenderedImage().getWidth(); int height = model.getRenderedImage().getHeight(); Dimension viewport = view.getCurrentViewport(); double zoomFactorX = viewport.getWidth()/width; double zoomFactorY = viewport.getHeight()/height; factor = Math.min(zoomFactorX, zoomFactorY); } model.setZoomFactor(factor); view.zoomImage(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/5aacd98a1cfb2219e218c87eed17b5a0f0e9738a/BrowserComponent.java/clean/SRC/org/openmicroscopy/shoola/agents/imviewer/browser/BrowserComponent.java |
if (factor > ZoomAction.MAX_ZOOM_FACTOR || factor < ZoomAction.MIN_ZOOM_FACTOR) throw new IllegalArgumentException("The zoom factor is value " + "between "+ZoomAction.MIN_ZOOM_FACTOR+" and "+ ZoomAction.MAX_ZOOM_FACTOR); | if (factor > ZoomAction.MAX_ZOOM_FACTOR || factor < ZoomAction.MIN_ZOOM_FACTOR) throw new IllegalArgumentException("The zoom factor is value " + "between "+ZoomAction.MIN_ZOOM_FACTOR+" and "+ ZoomAction.MAX_ZOOM_FACTOR); | public void setZoomFactor(double factor) { if (factor != -1) { if (factor > ZoomAction.MAX_ZOOM_FACTOR || factor < ZoomAction.MIN_ZOOM_FACTOR) throw new IllegalArgumentException("The zoom factor is value " + "between "+ZoomAction.MIN_ZOOM_FACTOR+" and "+ ZoomAction.MAX_ZOOM_FACTOR); } else { int width = model.getRenderedImage().getWidth(); int height = model.getRenderedImage().getHeight(); Dimension viewport = view.getCurrentViewport(); double zoomFactorX = viewport.getWidth()/width; double zoomFactorY = viewport.getHeight()/height; factor = Math.min(zoomFactorX, zoomFactorY); } model.setZoomFactor(factor); view.zoomImage(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/5aacd98a1cfb2219e218c87eed17b5a0f0e9738a/BrowserComponent.java/clean/SRC/org/openmicroscopy/shoola/agents/imviewer/browser/BrowserComponent.java |
view.zoomImage(); | view.zoomImage(); | public void setZoomFactor(double factor) { if (factor != -1) { if (factor > ZoomAction.MAX_ZOOM_FACTOR || factor < ZoomAction.MIN_ZOOM_FACTOR) throw new IllegalArgumentException("The zoom factor is value " + "between "+ZoomAction.MIN_ZOOM_FACTOR+" and "+ ZoomAction.MAX_ZOOM_FACTOR); } else { int width = model.getRenderedImage().getWidth(); int height = model.getRenderedImage().getHeight(); Dimension viewport = view.getCurrentViewport(); double zoomFactorX = viewport.getWidth()/width; double zoomFactorY = viewport.getHeight()/height; factor = Math.min(zoomFactorX, zoomFactorY); } model.setZoomFactor(factor); view.zoomImage(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/5aacd98a1cfb2219e218c87eed17b5a0f0e9738a/BrowserComponent.java/clean/SRC/org/openmicroscopy/shoola/agents/imviewer/browser/BrowserComponent.java |
scrollPane.setPreferredSize(MIN_SCROLL); | scrollPane.setPreferredSize(SCROLL_ROI); | private JPanel buildListPanel() { JPanel p = new JPanel(); JLabel label = new JLabel("Select channels "); GridBagLayout gridbag = new GridBagLayout(); GridBagConstraints c = new GridBagConstraints(); p.setLayout(gridbag); c.weightx = 0.5; c.gridx = 0; c.gridy = 0; c.anchor = GridBagConstraints.NORTHWEST; gridbag.setConstraints(label, c); p.add(label); JScrollPane scrollPane = new JScrollPane(listChannels); scrollPane.setPreferredSize(dimScroll); c.gridx = 1; gridbag.setConstraints(scrollPane, c); p.add(scrollPane); c.gridy = 1; Component box = Box.createRigidArea(VBOX); gridbag.setConstraints(box, c); p.add(box); label = new JLabel("Select ROIs "); c.gridx = 0; c.gridy = 2; gridbag.setConstraints(label, c); p.add(label); scrollPane = new JScrollPane(listROI); scrollPane.setPreferredSize(MIN_SCROLL); c.gridx = 1; gridbag.setConstraints(scrollPane, c); p.add(scrollPane); return UIUtilities.buildComponentPanel(p); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/3db37517e6873d11567ee5822e769ab058e1abed/AnalysisControls.java/clean/SRC/org/openmicroscopy/shoola/agents/roi/pane/AnalysisControls.java |
Permissions perms = Permissions.IMMUTABLE; | Permissions perms = Permissions.READ_ONLY; | public void test_HandlesExplicitPermissionReduction() throws Exception { login( uname, gname, "Test" ); p = new Project(); p.setName( "ticket:339" ); d = new Dataset(); d.setName( "ticket:339" ); p.linkDataset( d ); Permissions perms = Permissions.IMMUTABLE; // relatively common use-case p.getDetails().setPermissions( perms ); Project t = iUpdate.saveAndReturnObject( p ); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/2dfe4b9655ff0674ded23d5429cb730ba9d314f0/LockingTest.java/buggy/components/server/test/ome/server/itests/sec/LockingTest.java |
throw new IllegalStateException("Could not find valid implementation for: " + version, e); | throw (IllegalStateException) new IllegalStateException("Could not find valid implementation for: " + version).initCause(e); | public static XmlBeanDefinitionReader createBeanDefinitionReader( SpringApplicationContext applicationContext, BeanDefinitionRegistry registry, List xmlPreprocessors) { String version = SpringVersion.getVersion(); String className = "org.apache.xbean.spring.context.v" + version.charAt(0) + ".XBeanXmlBeanDefinitionReader"; try { Class cl = Class.forName(className); Constructor cstr = cl.getConstructor(new Class[] { SpringApplicationContext.class, BeanDefinitionRegistry.class, List.class }); return (XmlBeanDefinitionReader) cstr.newInstance(new Object[] { applicationContext, registry, xmlPreprocessors }); } catch (Exception e) { throw new IllegalStateException("Could not find valid implementation for: " + version, e); } } | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/d8f8672e113549ebb864bc748c4897a6cb04359a/XBeanHelper.java/buggy/xbean-spring-common/src/main/java/org/apache/xbean/spring/context/impl/XBeanHelper.java |
values.add(getLocaleIdAsString()); | values.add(getLanguage()); | public Object[] getValues() {// "Headline", "Published", "Author", "Status" List values = new ArrayList(); values.add(getHeadline()); values.add(getAuthor()); values.add(getSource()); values.add(getCreationDate()); values.add(getLocaleIdAsString()); values.add(getStatus()); return values.toArray(new Object[values.size()]); } | 57000 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57000/9dd8a7f9883fa3785baebfbed97ebf38eba1add9/ArticleSearchResultBean.java/clean/src/java/com/idega/block/article/bean/ArticleSearchResultBean.java |
super(displayedDocument); | this.dd = displayedDocument; | public MainMenuController(DisplayedDocument displayedDocument) { super(displayedDocument); } | 57508 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57508/57d4036eb7167d2d27117abe1f0280376377dbaa/MainMenuController.java/buggy/trunk/src/de/berlios/koalanotes/controllers/MainMenuController.java |
command = repairDirSeps(command); | private static int runInShell(IRuby runtime, String command, StringBuffer output) { try { String shell = System.getProperty("jruby.shell"); Process aProcess; String shellSwitch = "-c"; if (shell != null) { if (!shell.endsWith("sh")) { shellSwitch = "/c"; } aProcess = Runtime.getRuntime().exec(new String[] { shell, shellSwitch, command }); } else { aProcess = Runtime.getRuntime().exec(command); } final BufferedReader reader = new BufferedReader(new InputStreamReader(aProcess.getInputStream())); // Fairly innefficient impl, but readLine is unable to tell // whether the last line in a process ended with a newline or not. int c; boolean crSeen = false; while ((c = reader.read()) != -1) { if (c == '\r') { crSeen = true; } else { if (crSeen) { if (c != '\n') { output.append('\r'); } crSeen = false; } output.append((char)c); } } if (crSeen) { output.append('\r'); } aProcess.getErrorStream().close(); aProcess.getOutputStream().close(); reader.close(); return aProcess.waitFor(); } catch (IOException e) { throw runtime.newIOErrorFromException(e); } catch (InterruptedException e) { throw runtime.newThreadError("unexpected interrupt"); } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/326f29689bec86179bde014a629e3e8826ed47f6/RubyKernel.java/buggy/src/org/jruby/RubyKernel.java |
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fixpos(end, head); | end.setPosFrom(head); | public Node block_append(Node head, Node tail) { if (tail == null) { return head; } else if (head == null) { return tail; } Node end; if (head instanceof BlockNode) { end = ((BlockNode) head).getEndNode(); } else { end = nf.newBlock(head); // end.setEndNode(end); not needed anymore Benoit fixpos(end, head); head = end; } if (ruby.isVerbose()) { Node nd = end.getHeadNode(); while (true) { switch (nd.getType()) { case Constants.NODE_RETURN : case Constants.NODE_BREAK : case Constants.NODE_NEXT : case Constants.NODE_REDO : case Constants.NODE_RETRY : rb_warning("statement not reached"); break; case Constants.NODE_NEWLINE : nd = nd.getNextNode(); continue; default : break; } break; } } if (!(tail instanceof BlockNode)) { tail = nf.newBlock(tail); // tail.setEndNode(tail); not needed anymore Benoit } end.setNextNode(tail); head.setEndNode(tail.getEndNode()); return head; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/ParserHelper.java/buggy/org/jruby/parser/ParserHelper.java |
public Node cond(Node node) { // return cond1(node, 0); if (node == null) { return null; } if (node.getType() == Constants.NODE_NEWLINE) { node.setNextNode(cond0(node.getNextNode()/*, logop*/)); return node; } return cond0(node/*, logop*/); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/ParserHelper.java/buggy/org/jruby/parser/ParserHelper.java |
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node.setNextNode(cond0(node.getNextNode()/*, logop*/)); | node.setNextNode(cond0(node.getNextNode())); | public Node cond(Node node) { // return cond1(node, 0); if (node == null) { return null; } if (node.getType() == Constants.NODE_NEWLINE) { node.setNextNode(cond0(node.getNextNode()/*, logop*/)); return node; } return cond0(node/*, logop*/); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/ParserHelper.java/buggy/org/jruby/parser/ParserHelper.java |
return cond0(node/*, logop*/); | return cond0(node); | public Node cond(Node node) { // return cond1(node, 0); if (node == null) { return null; } if (node.getType() == Constants.NODE_NEWLINE) { node.setNextNode(cond0(node.getNextNode()/*, logop*/)); return node; } return cond0(node/*, logop*/); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/ParserHelper.java/buggy/org/jruby/parser/ParserHelper.java |
private Node cond0(Node node /*, int logop*/) { int type = node.getType(); | private Node cond0(Node node) { int type = node.getType(); | private Node cond0(Node node /*, int logop*/) { int type = node.getType(); // enum node_type assign_in_cond(node); // DOT => FLIP boolean exclusive = true; switch (type) { /*case Constants.NODE_DSTR : case Constants.NODE_STR : if (logop != 0) { break; } rb_warn("string literal in condition"); break;*/ case Constants.NODE_DREGX : case Constants.NODE_DREGX_ONCE : // warning_unless_e_option("regex literal in condition"); getLocalIndex("_"); getLocalIndex("~"); return nf.newMatch2(node, nf.newGVar("$_")); case Constants.NODE_DOT2 : exclusive = false; case Constants.NODE_DOT3 : Node flipNode = new FlipNode(cond2(node.getBeginNode()/*, logop*/), cond2(node.getEndNode()/*, logop*/), exclusive); flipNode.setCount(registerLocal(null)); // warning_unless_e_option("range literal in condition"); return flipNode; case Constants.NODE_LIT : if (node.getLiteral() instanceof RubyRegexp) { getLocalIndex("_"); getLocalIndex("~"); return nf.newMatch(node); } else if (node.getLiteral() instanceof RubyString) { getLocalIndex("_"); getLocalIndex("~"); return nf.newMatch(nf.newLit(RubyRegexp.newRegexp(ruby, (RubyString)node.getLiteral(), 0))); } default: return node; } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/ParserHelper.java/buggy/org/jruby/parser/ParserHelper.java |
/*case Constants.NODE_DSTR : case Constants.NODE_STR : if (logop != 0) { break; } rb_warn("string literal in condition"); break;*/ | private Node cond0(Node node /*, int logop*/) { int type = node.getType(); // enum node_type assign_in_cond(node); // DOT => FLIP boolean exclusive = true; switch (type) { /*case Constants.NODE_DSTR : case Constants.NODE_STR : if (logop != 0) { break; } rb_warn("string literal in condition"); break;*/ case Constants.NODE_DREGX : case Constants.NODE_DREGX_ONCE : // warning_unless_e_option("regex literal in condition"); getLocalIndex("_"); getLocalIndex("~"); return nf.newMatch2(node, nf.newGVar("$_")); case Constants.NODE_DOT2 : exclusive = false; case Constants.NODE_DOT3 : Node flipNode = new FlipNode(cond2(node.getBeginNode()/*, logop*/), cond2(node.getEndNode()/*, logop*/), exclusive); flipNode.setCount(registerLocal(null)); // warning_unless_e_option("range literal in condition"); return flipNode; case Constants.NODE_LIT : if (node.getLiteral() instanceof RubyRegexp) { getLocalIndex("_"); getLocalIndex("~"); return nf.newMatch(node); } else if (node.getLiteral() instanceof RubyString) { getLocalIndex("_"); getLocalIndex("~"); return nf.newMatch(nf.newLit(RubyRegexp.newRegexp(ruby, (RubyString)node.getLiteral(), 0))); } default: return node; } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/ParserHelper.java/buggy/org/jruby/parser/ParserHelper.java |
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private Node cond0(Node node /*, int logop*/) { int type = node.getType(); // enum node_type assign_in_cond(node); // DOT => FLIP boolean exclusive = true; switch (type) { /*case Constants.NODE_DSTR : case Constants.NODE_STR : if (logop != 0) { break; } rb_warn("string literal in condition"); break;*/ case Constants.NODE_DREGX : case Constants.NODE_DREGX_ONCE : // warning_unless_e_option("regex literal in condition"); getLocalIndex("_"); getLocalIndex("~"); return nf.newMatch2(node, nf.newGVar("$_")); case Constants.NODE_DOT2 : exclusive = false; case Constants.NODE_DOT3 : Node flipNode = new FlipNode(cond2(node.getBeginNode()/*, logop*/), cond2(node.getEndNode()/*, logop*/), exclusive); flipNode.setCount(registerLocal(null)); // warning_unless_e_option("range literal in condition"); return flipNode; case Constants.NODE_LIT : if (node.getLiteral() instanceof RubyRegexp) { getLocalIndex("_"); getLocalIndex("~"); return nf.newMatch(node); } else if (node.getLiteral() instanceof RubyString) { getLocalIndex("_"); getLocalIndex("~"); return nf.newMatch(nf.newLit(RubyRegexp.newRegexp(ruby, (RubyString)node.getLiteral(), 0))); } default: return node; } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/ParserHelper.java/buggy/org/jruby/parser/ParserHelper.java |
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Node flipNode = new FlipNode(cond2(node.getBeginNode()/*, logop*/), cond2(node.getEndNode()/*, logop*/), exclusive); | Node flipNode = new FlipNode(cond2(node.getBeginNode()), cond2(node.getEndNode()), exclusive); | private Node cond0(Node node /*, int logop*/) { int type = node.getType(); // enum node_type assign_in_cond(node); // DOT => FLIP boolean exclusive = true; switch (type) { /*case Constants.NODE_DSTR : case Constants.NODE_STR : if (logop != 0) { break; } rb_warn("string literal in condition"); break;*/ case Constants.NODE_DREGX : case Constants.NODE_DREGX_ONCE : // warning_unless_e_option("regex literal in condition"); getLocalIndex("_"); getLocalIndex("~"); return nf.newMatch2(node, nf.newGVar("$_")); case Constants.NODE_DOT2 : exclusive = false; case Constants.NODE_DOT3 : Node flipNode = new FlipNode(cond2(node.getBeginNode()/*, logop*/), cond2(node.getEndNode()/*, logop*/), exclusive); flipNode.setCount(registerLocal(null)); // warning_unless_e_option("range literal in condition"); return flipNode; case Constants.NODE_LIT : if (node.getLiteral() instanceof RubyRegexp) { getLocalIndex("_"); getLocalIndex("~"); return nf.newMatch(node); } else if (node.getLiteral() instanceof RubyString) { getLocalIndex("_"); getLocalIndex("~"); return nf.newMatch(nf.newLit(RubyRegexp.newRegexp(ruby, (RubyString)node.getLiteral(), 0))); } default: return node; } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/ParserHelper.java/buggy/org/jruby/parser/ParserHelper.java |
private Node cond0(Node node /*, int logop*/) { int type = node.getType(); // enum node_type assign_in_cond(node); // DOT => FLIP boolean exclusive = true; switch (type) { /*case Constants.NODE_DSTR : case Constants.NODE_STR : if (logop != 0) { break; } rb_warn("string literal in condition"); break;*/ case Constants.NODE_DREGX : case Constants.NODE_DREGX_ONCE : // warning_unless_e_option("regex literal in condition"); getLocalIndex("_"); getLocalIndex("~"); return nf.newMatch2(node, nf.newGVar("$_")); case Constants.NODE_DOT2 : exclusive = false; case Constants.NODE_DOT3 : Node flipNode = new FlipNode(cond2(node.getBeginNode()/*, logop*/), cond2(node.getEndNode()/*, logop*/), exclusive); flipNode.setCount(registerLocal(null)); // warning_unless_e_option("range literal in condition"); return flipNode; case Constants.NODE_LIT : if (node.getLiteral() instanceof RubyRegexp) { getLocalIndex("_"); getLocalIndex("~"); return nf.newMatch(node); } else if (node.getLiteral() instanceof RubyString) { getLocalIndex("_"); getLocalIndex("~"); return nf.newMatch(nf.newLit(RubyRegexp.newRegexp(ruby, (RubyString)node.getLiteral(), 0))); } default: return node; } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/ParserHelper.java/buggy/org/jruby/parser/ParserHelper.java |
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if (id.charAt(0) == '#') { | /*if (id.charAt(0) == '#') { | public Node getAccessNode(String id) { id = id.intern(); if (id.charAt(0) == '#') { // Special variable or constant id = id.substring(1).intern(); if (id == "self") { return nf.newSelf(); } else if (id == "nil") { return nf.newNil(); } else if (id == "true") { return nf.newTrue(); } else if (id == "false") { return nf.newFalse(); } else if (id == "__FILE__") { return nf.newStr(RubyString.newString(ruby, ruby.getSourceFile())); } else if (id == "__LINE__") { return nf.newLit(RubyFixnum.newFixnum(ruby, ruby.getSourceLine())); } } else { if (IdUtil.isLocal(id)) { if (dyna_in_block() && RubyVarmap.isDefined(ruby, id)) { return nf.newDVar(id); } else if (isLocalRegistered(id)) { return nf.newLVar(id); } /* * method call without arguments */ return nf.newVCall(id); } else if (IdUtil.isGlobal(id)) { return nf.newGVar(id); } else if (IdUtil.isInstanceVariable(id)) { return nf.newIVar(id); } else if (IdUtil.isConstant(id)) { return nf.newConst(id); } else if (IdUtil.isClassVariable(id)) { if (isInSingle()) { return nf.newCVar2(id); } return nf.newCVar(id); } } rb_bug("Invalid id '" + id + "' for getAccessNode."); return null; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/ParserHelper.java/buggy/org/jruby/parser/ParserHelper.java |
} else { | } else { */ | public Node getAccessNode(String id) { id = id.intern(); if (id.charAt(0) == '#') { // Special variable or constant id = id.substring(1).intern(); if (id == "self") { return nf.newSelf(); } else if (id == "nil") { return nf.newNil(); } else if (id == "true") { return nf.newTrue(); } else if (id == "false") { return nf.newFalse(); } else if (id == "__FILE__") { return nf.newStr(RubyString.newString(ruby, ruby.getSourceFile())); } else if (id == "__LINE__") { return nf.newLit(RubyFixnum.newFixnum(ruby, ruby.getSourceLine())); } } else { if (IdUtil.isLocal(id)) { if (dyna_in_block() && RubyVarmap.isDefined(ruby, id)) { return nf.newDVar(id); } else if (isLocalRegistered(id)) { return nf.newLVar(id); } /* * method call without arguments */ return nf.newVCall(id); } else if (IdUtil.isGlobal(id)) { return nf.newGVar(id); } else if (IdUtil.isInstanceVariable(id)) { return nf.newIVar(id); } else if (IdUtil.isConstant(id)) { return nf.newConst(id); } else if (IdUtil.isClassVariable(id)) { if (isInSingle()) { return nf.newCVar2(id); } return nf.newCVar(id); } } rb_bug("Invalid id '" + id + "' for getAccessNode."); return null; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/ParserHelper.java/buggy/org/jruby/parser/ParserHelper.java |
} | public Node getAccessNode(String id) { id = id.intern(); if (id.charAt(0) == '#') { // Special variable or constant id = id.substring(1).intern(); if (id == "self") { return nf.newSelf(); } else if (id == "nil") { return nf.newNil(); } else if (id == "true") { return nf.newTrue(); } else if (id == "false") { return nf.newFalse(); } else if (id == "__FILE__") { return nf.newStr(RubyString.newString(ruby, ruby.getSourceFile())); } else if (id == "__LINE__") { return nf.newLit(RubyFixnum.newFixnum(ruby, ruby.getSourceLine())); } } else { if (IdUtil.isLocal(id)) { if (dyna_in_block() && RubyVarmap.isDefined(ruby, id)) { return nf.newDVar(id); } else if (isLocalRegistered(id)) { return nf.newLVar(id); } /* * method call without arguments */ return nf.newVCall(id); } else if (IdUtil.isGlobal(id)) { return nf.newGVar(id); } else if (IdUtil.isInstanceVariable(id)) { return nf.newIVar(id); } else if (IdUtil.isConstant(id)) { return nf.newConst(id); } else if (IdUtil.isClassVariable(id)) { if (isInSingle()) { return nf.newCVar2(id); } return nf.newCVar(id); } } rb_bug("Invalid id '" + id + "' for getAccessNode."); return null; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/ParserHelper.java/buggy/org/jruby/parser/ParserHelper.java |
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if (id.charAt(0) == '#') { | /*if (id.charAt(0) == '#') { | public Node getAssignmentNode(String id, Node valueNode) { value_expr(valueNode); id = id.intern(); if (id.charAt(0) == '#') { // Special variable or constant. id = id.substring(1).intern(); if (id == "self") { yyerror("Can't change the value of self"); } else { // nil, true, false, __FILE__, __LINE__ yyerror("Can't assign to " + id); } } else { if (IdUtil.isLocal(id)) { if (RubyVarmap.isCurrent(ruby, id)) { return nf.newDAsgnCurr(id, valueNode); } else if (RubyVarmap.isDefined(ruby, id)) { return nf.newDAsgn(id, valueNode); } else if (isLocalRegistered(id) || !dyna_in_block()) { return nf.newLAsgn(id, valueNode); } else { RubyVarmap.push(ruby, id, ruby.getNil()); return nf.newDAsgnCurr(id, valueNode); } } else if (IdUtil.isGlobal(id)) { return nf.newGAsgn(id, valueNode); } else if (IdUtil.isInstanceVariable(id)) { return nf.newIAsgn(id, valueNode); } else if (IdUtil.isConstant(id)) { if (isInDef() || isInSingle()) { yyerror("dynamic constant assignment"); } return nf.newCDecl(id, valueNode); } else if (IdUtil.isClassVariable(id)) { if (isInSingle()) { return nf.newCVAsgn(id, valueNode); } return nf.newCVDecl(id, valueNode); } else { rb_bug("Id '" + id + "' not allowed for variable."); } } return null; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/ParserHelper.java/buggy/org/jruby/parser/ParserHelper.java |
} | public Node getAssignmentNode(String id, Node valueNode) { value_expr(valueNode); id = id.intern(); if (id.charAt(0) == '#') { // Special variable or constant. id = id.substring(1).intern(); if (id == "self") { yyerror("Can't change the value of self"); } else { // nil, true, false, __FILE__, __LINE__ yyerror("Can't assign to " + id); } } else { if (IdUtil.isLocal(id)) { if (RubyVarmap.isCurrent(ruby, id)) { return nf.newDAsgnCurr(id, valueNode); } else if (RubyVarmap.isDefined(ruby, id)) { return nf.newDAsgn(id, valueNode); } else if (isLocalRegistered(id) || !dyna_in_block()) { return nf.newLAsgn(id, valueNode); } else { RubyVarmap.push(ruby, id, ruby.getNil()); return nf.newDAsgnCurr(id, valueNode); } } else if (IdUtil.isGlobal(id)) { return nf.newGAsgn(id, valueNode); } else if (IdUtil.isInstanceVariable(id)) { return nf.newIAsgn(id, valueNode); } else if (IdUtil.isConstant(id)) { if (isInDef() || isInSingle()) { yyerror("dynamic constant assignment"); } return nf.newCDecl(id, valueNode); } else if (IdUtil.isClassVariable(id)) { if (isInSingle()) { return nf.newCVAsgn(id, valueNode); } return nf.newCVDecl(id, valueNode); } else { rb_bug("Id '" + id + "' not allowed for variable."); } } return null; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/ParserHelper.java/buggy/org/jruby/parser/ParserHelper.java |
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return _line; | return ruby.getSourceLine(); | public int getLine() { return _line; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/ParserHelper.java/buggy/org/jruby/parser/ParserHelper.java |
fixpos(nl, node); | nl.setPosFrom(node); | public Node newline_node(Node node) { NewlineNode nl = null; if (node != null) { nl = nf.newNewline(node); fixpos(nl, node); // nl.setNth(node.getLine()); not needed anymore Benoit } return nl; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/ParserHelper.java/buggy/org/jruby/parser/ParserHelper.java |
/* * should not happen */ | public Node node_assign(Node lhs, Node rhs) { if (lhs == null) { return null; } value_expr(rhs); switch (lhs.getType()) { case Constants.NODE_GASGN : case Constants.NODE_IASGN : case Constants.NODE_LASGN : case Constants.NODE_DASGN : case Constants.NODE_DASGN_CURR : case Constants.NODE_MASGN : case Constants.NODE_CDECL : case Constants.NODE_CVDECL : case Constants.NODE_CVASGN : lhs.setValueNode(rhs); break; case Constants.NODE_CALL : lhs.setArgsNode(arg_add(lhs.getArgsNode(), rhs)); break; default : /* * should not happen */ break; } if (rhs != null) { fixpos(lhs, rhs); } return lhs; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/ParserHelper.java/buggy/org/jruby/parser/ParserHelper.java |
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if (rhs != null) { fixpos(lhs, rhs); } | lhs.setPosFrom(rhs); | public Node node_assign(Node lhs, Node rhs) { if (lhs == null) { return null; } value_expr(rhs); switch (lhs.getType()) { case Constants.NODE_GASGN : case Constants.NODE_IASGN : case Constants.NODE_LASGN : case Constants.NODE_DASGN : case Constants.NODE_DASGN_CURR : case Constants.NODE_MASGN : case Constants.NODE_CDECL : case Constants.NODE_CVDECL : case Constants.NODE_CVASGN : lhs.setValueNode(rhs); break; case Constants.NODE_CALL : lhs.setArgsNode(arg_add(lhs.getArgsNode(), rhs)); break; default : /* * should not happen */ break; } if (rhs != null) { fixpos(lhs, rhs); } return lhs; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/ParserHelper.java/buggy/org/jruby/parser/ParserHelper.java |
getProject().setBasedir( "/home/josh/code/omero/components/common/"); | getProject().setBasedir(commonDir.getPath()); | public void testAPITask() { final class T extends APITask { public T() { DefaultLogger logger = new DefaultLogger(); logger.setMessageOutputLevel(Project.MSG_DEBUG); logger.setErrorPrintStream(System.err); logger.setOutputPrintStream(System.out); setProject(new Project()); getProject().setBasedir( "/home/josh/code/omero/components/common/"); getProject().addBuildListener(logger); getProject().init(); setTaskName("api"); setTaskType("api"); setOwningTarget(new Target()); } } T task = new T(); FileSet fileSet = new FileSet(); fileSet.setDir(new File("/home/josh/code/omero/components/common/")); NameEntry entry = fileSet.createInclude(); entry.setName("**/api/*.java"); task.addFileset(fileSet); task.setDestdir(new File("/tmp")); task.execute(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/306e0ec280af470b0bdfe8da828534caf7ee2496/AntTasksTest.java/clean/components/dsl/test/ome/dsl/utests/AntTasksTest.java |
public void testAPITask() { final class T extends APITask { public T() { DefaultLogger logger = new DefaultLogger(); logger.setMessageOutputLevel(Project.MSG_DEBUG); logger.setErrorPrintStream(System.err); logger.setOutputPrintStream(System.out); setProject(new Project()); getProject().setBasedir( "/home/josh/code/omero/components/common/"); getProject().addBuildListener(logger); getProject().init(); setTaskName("api"); setTaskType("api"); setOwningTarget(new Target()); } } T task = new T(); FileSet fileSet = new FileSet(); fileSet.setDir(new File("/home/josh/code/omero/components/common/")); NameEntry entry = fileSet.createInclude(); entry.setName("**/api/*.java"); task.addFileset(fileSet); task.setDestdir(new File("/tmp")); task.execute(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/306e0ec280af470b0bdfe8da828534caf7ee2496/AntTasksTest.java/clean/components/dsl/test/ome/dsl/utests/AntTasksTest.java |
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fileSet.setDir(new File("/home/josh/code/omero/components/common/")); | fileSet.setDir(commonDir); | public void testAPITask() { final class T extends APITask { public T() { DefaultLogger logger = new DefaultLogger(); logger.setMessageOutputLevel(Project.MSG_DEBUG); logger.setErrorPrintStream(System.err); logger.setOutputPrintStream(System.out); setProject(new Project()); getProject().setBasedir( "/home/josh/code/omero/components/common/"); getProject().addBuildListener(logger); getProject().init(); setTaskName("api"); setTaskType("api"); setOwningTarget(new Target()); } } T task = new T(); FileSet fileSet = new FileSet(); fileSet.setDir(new File("/home/josh/code/omero/components/common/")); NameEntry entry = fileSet.createInclude(); entry.setName("**/api/*.java"); task.addFileset(fileSet); task.setDestdir(new File("/tmp")); task.execute(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/306e0ec280af470b0bdfe8da828534caf7ee2496/AntTasksTest.java/clean/components/dsl/test/ome/dsl/utests/AntTasksTest.java |
public void testAPITask() { final class T extends APITask { public T() { DefaultLogger logger = new DefaultLogger(); logger.setMessageOutputLevel(Project.MSG_DEBUG); logger.setErrorPrintStream(System.err); logger.setOutputPrintStream(System.out); setProject(new Project()); getProject().setBasedir( "/home/josh/code/omero/components/common/"); getProject().addBuildListener(logger); getProject().init(); setTaskName("api"); setTaskType("api"); setOwningTarget(new Target()); } } T task = new T(); FileSet fileSet = new FileSet(); fileSet.setDir(new File("/home/josh/code/omero/components/common/")); NameEntry entry = fileSet.createInclude(); entry.setName("**/api/*.java"); task.addFileset(fileSet); task.setDestdir(new File("/tmp")); task.execute(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/306e0ec280af470b0bdfe8da828534caf7ee2496/AntTasksTest.java/clean/components/dsl/test/ome/dsl/utests/AntTasksTest.java |
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getProject().setBasedir( "/home/josh/code/omero/components/common/"); | getProject().setBasedir(commonDir.getPath()); | public T() { DefaultLogger logger = new DefaultLogger(); logger.setMessageOutputLevel(Project.MSG_DEBUG); logger.setErrorPrintStream(System.err); logger.setOutputPrintStream(System.out); setProject(new Project()); getProject().setBasedir( "/home/josh/code/omero/components/common/"); getProject().addBuildListener(logger); getProject().init(); setTaskName("api"); setTaskType("api"); setOwningTarget(new Target()); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/306e0ec280af470b0bdfe8da828534caf7ee2496/AntTasksTest.java/clean/components/dsl/test/ome/dsl/utests/AntTasksTest.java |
for (int i = traceSize; i > 0; i--) { | for (int i = traceSize; i > currentBindingFrame(); i--) { | public IRubyObject createBacktrace(int level, boolean nativeException) { RubyArray backtrace = runtime.newArray(); int traceSize = frameIndex - level; if (traceSize <= 0) { return backtrace; } if (nativeException) { // assert level == 0; addBackTraceElement(backtrace, (Frame) frameStack[frameIndex], null); } for (int i = traceSize; i > 0; i--) { addBackTraceElement(backtrace, (Frame) frameStack[i], (Frame) frameStack[i-1]); } return backtrace; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/cb6e4cdcad9ecef3fd9bff58c92c45c57ac081e9/ThreadContext.java/buggy/src/org/jruby/runtime/ThreadContext.java |
popBindingFrame(); | public void postEvalWithBinding(Block block) { popIter(); popFrame(); unsetCRef(); popRubyClass(); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/cb6e4cdcad9ecef3fd9bff58c92c45c57ac081e9/ThreadContext.java/buggy/src/org/jruby/runtime/ThreadContext.java |
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pushBindingFrame(frameIndex); | public void preEvalWithBinding(Block block) { pushFrame(block.getFrame()); setCRef(block.getCRef()); getCurrentFrame().setScope(block.getScope()); pushRubyClass(block.getKlass()); pushIter(block.getIter()); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/cb6e4cdcad9ecef3fd9bff58c92c45c57ac081e9/ThreadContext.java/buggy/src/org/jruby/runtime/ThreadContext.java |
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this.view = view; | PermissionPane(EditorPaneUI view, EditorPane model, Map details, PermissionData permission) { if (details == null) throw new IllegalArgumentException("Visualization map cannot be" + " null"); if (view == null) throw new IllegalArgumentException("No view."); if (model == null) throw new IllegalArgumentException("No model."); this.model = model; buildGUI(details, permission); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e80ea8dfe69d2fff96797c180ecd95e07b7dd384/PermissionPane.java/clean/SRC/org/openmicroscopy/shoola/agents/hiviewer/clipboard/editor/PermissionPane.java |
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if (backtrace == null) { return getRuntime().getNil(); } return backtrace; | return backtrace == null ? getRuntime().getNil() : backtrace; | public IRubyObject backtrace() { if (backtrace == null) { return getRuntime().getNil(); } return backtrace; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/fe628a940467ceda783730ea34173dec3d365fa4/RubyException.java/clean/src/org/jruby/RubyException.java |
if (args[0] == this) { return this; } return newInstance(getMetaClass(), args); | return args[0] == this ? this : newInstance(getMetaClass(), args); | public RubyException exception(IRubyObject[] args) { switch (args.length) { case 0 : return this; case 1 : if (args[0] == this) { return this; } return newInstance(getMetaClass(), args); default : throw getRuntime().newArgumentError("Wrong argument count"); } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/fe628a940467ceda783730ea34173dec3d365fa4/RubyException.java/clean/src/org/jruby/RubyException.java |
public RubyException exception(IRubyObject[] args) { switch (args.length) { case 0 : return this; case 1 : if (args[0] == this) { return this; } return newInstance(getMetaClass(), args); default : throw getRuntime().newArgumentError("Wrong argument count"); } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/fe628a940467ceda783730ea34173dec3d365fa4/RubyException.java/clean/src/org/jruby/RubyException.java |
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public IRubyObject inspect() { RubyModule rubyClass = getMetaClass(); RubyString exception = RubyString.stringValue(this); if (exception.getValue().length() == 0) { return getRuntime().newString(rubyClass.getName()); } StringBuffer sb = new StringBuffer(); sb.append("#<"); sb.append(rubyClass.getName()); sb.append(": "); sb.append(exception.getValue()); sb.append(">"); return getRuntime().newString(sb.toString()); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/fe628a940467ceda783730ea34173dec3d365fa4/RubyException.java/clean/src/org/jruby/RubyException.java |
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StringBuffer sb = new StringBuffer(); sb.append("#<"); sb.append(rubyClass.getName()); sb.append(": "); sb.append(exception.getValue()); sb.append(">"); | StringBuffer sb = new StringBuffer("#<"); sb.append(rubyClass.getName()).append(": ").append(exception.getValue()).append(">"); | public IRubyObject inspect() { RubyModule rubyClass = getMetaClass(); RubyString exception = RubyString.stringValue(this); if (exception.getValue().length() == 0) { return getRuntime().newString(rubyClass.getName()); } StringBuffer sb = new StringBuffer(); sb.append("#<"); sb.append(rubyClass.getName()); sb.append(": "); sb.append(exception.getValue()); sb.append(">"); return getRuntime().newString(sb.toString()); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/fe628a940467ceda783730ea34173dec3d365fa4/RubyException.java/clean/src/org/jruby/RubyException.java |
IRubyObject[] elements = ((RubyArray) backtrace()).toJavaArray(); | IRubyObject backtrace = callMethod(getRuntime().getCurrentContext(), "backtrace"); if (!backtrace.isNil() && backtrace instanceof RubyArray) { IRubyObject[] elements = ((RubyArray)backtrace.convertToArray()).toJavaArray(); | public void printBacktrace(PrintStream errorStream) { IRubyObject[] elements = ((RubyArray) backtrace()).toJavaArray(); for (int i = 1; i < elements.length; i++) { IRubyObject stackTraceLine = elements[i]; if (stackTraceLine instanceof RubyString) { printStackTraceLine(errorStream, stackTraceLine); } if (i == RubyException.TRACE_HEAD && elements.length > RubyException.TRACE_MAX) { int hiddenLevels = elements.length - RubyException.TRACE_HEAD - RubyException.TRACE_TAIL; errorStream.print("\t ... " + hiddenLevels + " levels...\n"); i = elements.length - RubyException.TRACE_TAIL; } } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/fe628a940467ceda783730ea34173dec3d365fa4/RubyException.java/clean/src/org/jruby/RubyException.java |
for (int i = 1; i < elements.length; i++) { IRubyObject stackTraceLine = elements[i]; if (stackTraceLine instanceof RubyString) { printStackTraceLine(errorStream, stackTraceLine); } | for (int i = 1; i < elements.length; i++) { IRubyObject stackTraceLine = elements[i]; if (stackTraceLine instanceof RubyString) { printStackTraceLine(errorStream, stackTraceLine); } | public void printBacktrace(PrintStream errorStream) { IRubyObject[] elements = ((RubyArray) backtrace()).toJavaArray(); for (int i = 1; i < elements.length; i++) { IRubyObject stackTraceLine = elements[i]; if (stackTraceLine instanceof RubyString) { printStackTraceLine(errorStream, stackTraceLine); } if (i == RubyException.TRACE_HEAD && elements.length > RubyException.TRACE_MAX) { int hiddenLevels = elements.length - RubyException.TRACE_HEAD - RubyException.TRACE_TAIL; errorStream.print("\t ... " + hiddenLevels + " levels...\n"); i = elements.length - RubyException.TRACE_TAIL; } } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/fe628a940467ceda783730ea34173dec3d365fa4/RubyException.java/clean/src/org/jruby/RubyException.java |
if (i == RubyException.TRACE_HEAD && elements.length > RubyException.TRACE_MAX) { int hiddenLevels = elements.length - RubyException.TRACE_HEAD - RubyException.TRACE_TAIL; errorStream.print("\t ... " + hiddenLevels + " levels...\n"); i = elements.length - RubyException.TRACE_TAIL; } | if (i == RubyException.TRACE_HEAD && elements.length > RubyException.TRACE_MAX) { int hiddenLevels = elements.length - RubyException.TRACE_HEAD - RubyException.TRACE_TAIL; errorStream.print("\t ... " + hiddenLevels + " levels...\n"); i = elements.length - RubyException.TRACE_TAIL; } } | public void printBacktrace(PrintStream errorStream) { IRubyObject[] elements = ((RubyArray) backtrace()).toJavaArray(); for (int i = 1; i < elements.length; i++) { IRubyObject stackTraceLine = elements[i]; if (stackTraceLine instanceof RubyString) { printStackTraceLine(errorStream, stackTraceLine); } if (i == RubyException.TRACE_HEAD && elements.length > RubyException.TRACE_MAX) { int hiddenLevels = elements.length - RubyException.TRACE_HEAD - RubyException.TRACE_TAIL; errorStream.print("\t ... " + hiddenLevels + " levels...\n"); i = elements.length - RubyException.TRACE_TAIL; } } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/fe628a940467ceda783730ea34173dec3d365fa4/RubyException.java/clean/src/org/jruby/RubyException.java |
public RubyArray set_backtrace(IRubyObject obj) { backtrace = obj.convertToArray(); return backtrace; | public IRubyObject set_backtrace(IRubyObject obj) { if (obj.isNil()) { backtrace = null; } else if (!isArrayOfStrings(obj)) { throw getRuntime().newTypeError("backtrace must be Array of String"); } else { backtrace = (RubyArray) obj; } return backtrace(); | public RubyArray set_backtrace(IRubyObject obj) { backtrace = obj.convertToArray(); return backtrace; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/fe628a940467ceda783730ea34173dec3d365fa4/RubyException.java/clean/src/org/jruby/RubyException.java |
private int sysread(StringBuffer buf, int length) throws IOException { | protected int sysread(StringBuffer buf, int length) throws IOException { | private int sysread(StringBuffer buf, int length) throws IOException { if (buf == null) { throw new IOException("sysread2: Buf is null"); } int i = 0; for (;i < length; i++) { int c = sysread(); if (c == -1) { if (i <= 0) { return -1; } break; } buf.append((char) c); } return i; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/955df6c6347fe40e2cb6502680208323eef890e2/IOHandler.java/buggy/src/org/jruby/util/IOHandler.java |
new BrowserMode[] { BrowserMode.IMAGE_NAME_MODE, | new BrowserMode[] { BrowserMode.NOOP_MODE, BrowserMode.IMAGE_NAME_MODE, | private void init() { env = BrowserEnvironment.getInstance(); progressListeners = new HashSet(); modelListeners = new HashSet(); selectedThumbnails = new HashSet(); attributeMap = new AttributeMap(); groupingMethod = new SingleGroupingMethod(); groupModels = Arrays.asList(groupingMethod.getGroups()); thumbnailSet = new HashSet(); imageIDMap = new HashMap(); annotationModel = new PaintMethodZOrder(); modeClassMap = new HashMap(); availableTypesList = new ArrayList(); panActionClass = new BrowserModeClass(PAN_MODE_NAME, new BrowserMode[] { BrowserMode.DEFAULT_MODE, BrowserMode.HAND_MODE}, BrowserMode.DEFAULT_MODE); majorUIModeClass = new BrowserModeClass(MAJOR_UI_MODE_NAME, new BrowserMode[] { BrowserMode.DEFAULT_MODE, BrowserMode.ANNOTATE_MODE, BrowserMode.CLASSIFY_MODE, BrowserMode.GRAPH_MODE}, BrowserMode.DEFAULT_MODE); selectModeClass = new BrowserModeClass(SELECT_MODE_NAME, new BrowserMode[] { BrowserMode.UNSELECTED_MODE, BrowserMode.SELECTING_MODE, BrowserMode.SELECTED_MODE}, BrowserMode.UNSELECTED_MODE); zoomModeClass = new BrowserModeClass(ZOOM_MODE_NAME, new BrowserMode[] { BrowserMode.ZOOM_TO_FIT_MODE, BrowserMode.ZOOM_50_MODE, BrowserMode.ZOOM_75_MODE, BrowserMode.ZOOM_ACTUAL_MODE, BrowserMode.ZOOM_200_MODE}, BrowserMode.ZOOM_TO_FIT_MODE); semanticModeClass = new BrowserModeClass(SEMANTIC_MODE_NAME, new BrowserMode[] { BrowserMode.IMAGE_NAME_MODE, BrowserMode.SEMANTIC_ZOOMING_MODE}, BrowserMode.SEMANTIC_ZOOMING_MODE); modeClassMap.put(PAN_MODE_NAME,panActionClass); modeClassMap.put(MAJOR_UI_MODE_NAME,majorUIModeClass); modeClassMap.put(SELECT_MODE_NAME,selectModeClass); modeClassMap.put(ZOOM_MODE_NAME,zoomModeClass); modeClassMap.put(SEMANTIC_MODE_NAME,semanticModeClass); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/913e45a73e803bf6a97dca24496a64546a51c9d5/BrowserModel.java/buggy/SRC/org/openmicroscopy/shoola/agents/browser/BrowserModel.java |
if ( ! isOwnerOrSupervisor(obj)) throw new SecurityViolation(String.format( "You are not authorized to change " + "the permissions for %s from %s to %s", obj, previousP, currentP)); | protected boolean managedPermissions(boolean locked, boolean privileged, IObject obj, Details previousDetails, Details currentDetails, Details newDetails) { // setup boolean altered = false; Permissions previousP = previousDetails == null ? null : previousDetails.getPermissions(); Permissions currentP = currentDetails == null ? null : currentDetails .getPermissions(); // ignore newDetails permissions. if ( ! isOwnerOrSupervisor(obj)) throw new SecurityViolation(String.format( "You are not authorized to change " + "the permissions for %s from %s to %s", obj, previousP, currentP)); // If the stored perms are null, then we can't validate anything if (previousP == null) { if (currentP == null) { newDetails.setPermissions(null); altered |= false; // don't need to update } else { newDetails.setPermissions(currentP); altered = true; } } // WORKAROUND for ticket:307 by checking for SOFT below // see https://trac.openmicroscopy.org.uk/omero/ticket/307 // see // http://opensource.atlassian.com/projects/hibernate/browse/HHH-2027 // Users did not enter permission (normal case) so is null OR // in the workaround permissions is SOFT, then // need to copy whole sale those from database. else if (currentP == null || currentP.isSet(Flag.SOFT)) { newDetails.setPermissions(previousP); altered = true; } // if the user has set the permissions (currentDetails), then we should // try to allow that. if it's identical to the current, then there // is no reason to hit the DB. else { // if we need to filter any permissions, do it here! newDetails.setPermissions(currentP); if (!currentP.identical(previousP)) { altered = true; } } // now we've calculated the desired permissions, throw // a security violation if this instance was locked AND // the read permissions have been lowered or if the lock // was removed. if (locked) { if (previousP == null) // if null it can't have been locked. throw new InternalException("Null permissions cannot be locked"); Permissions calculatedP = newDetails.getPermissions(); if (calculatedP != null) { // can't override if ( ! calculatedP.isSet( Flag.LOCKED )) { calculatedP.set(Flag.LOCKED); altered = true; } if ((previousP.isGranted(USER, READ) && !calculatedP.isGranted(USER, READ)) || (previousP.isGranted(GROUP, READ) && !calculatedP .isGranted(GROUP, READ)) || (previousP.isGranted(WORLD, READ) && !calculatedP .isGranted(WORLD, READ))) throw new SecurityViolation( "Cannot remove READ from locked entity:" + obj); } } // privileged plays no role since everyone can alter their permissions // (within bounds) return altered; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/2d82f9f2dbb09cc6bae9eb0ffe2e4036e732772b/BasicSecuritySystem.java/clean/components/server/src/ome/security/basic/BasicSecuritySystem.java |
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if (!currentP.identical(previousP)) { | if (!currentP.identical(previousP)) { if ( ! isOwnerOrSupervisor(obj)) throw new SecurityViolation(String.format( "You are not authorized to change " + "the permissions for %s from %s to %s", obj, previousP, currentP)); | protected boolean managedPermissions(boolean locked, boolean privileged, IObject obj, Details previousDetails, Details currentDetails, Details newDetails) { // setup boolean altered = false; Permissions previousP = previousDetails == null ? null : previousDetails.getPermissions(); Permissions currentP = currentDetails == null ? null : currentDetails .getPermissions(); // ignore newDetails permissions. if ( ! isOwnerOrSupervisor(obj)) throw new SecurityViolation(String.format( "You are not authorized to change " + "the permissions for %s from %s to %s", obj, previousP, currentP)); // If the stored perms are null, then we can't validate anything if (previousP == null) { if (currentP == null) { newDetails.setPermissions(null); altered |= false; // don't need to update } else { newDetails.setPermissions(currentP); altered = true; } } // WORKAROUND for ticket:307 by checking for SOFT below // see https://trac.openmicroscopy.org.uk/omero/ticket/307 // see // http://opensource.atlassian.com/projects/hibernate/browse/HHH-2027 // Users did not enter permission (normal case) so is null OR // in the workaround permissions is SOFT, then // need to copy whole sale those from database. else if (currentP == null || currentP.isSet(Flag.SOFT)) { newDetails.setPermissions(previousP); altered = true; } // if the user has set the permissions (currentDetails), then we should // try to allow that. if it's identical to the current, then there // is no reason to hit the DB. else { // if we need to filter any permissions, do it here! newDetails.setPermissions(currentP); if (!currentP.identical(previousP)) { altered = true; } } // now we've calculated the desired permissions, throw // a security violation if this instance was locked AND // the read permissions have been lowered or if the lock // was removed. if (locked) { if (previousP == null) // if null it can't have been locked. throw new InternalException("Null permissions cannot be locked"); Permissions calculatedP = newDetails.getPermissions(); if (calculatedP != null) { // can't override if ( ! calculatedP.isSet( Flag.LOCKED )) { calculatedP.set(Flag.LOCKED); altered = true; } if ((previousP.isGranted(USER, READ) && !calculatedP.isGranted(USER, READ)) || (previousP.isGranted(GROUP, READ) && !calculatedP .isGranted(GROUP, READ)) || (previousP.isGranted(WORLD, READ) && !calculatedP .isGranted(WORLD, READ))) throw new SecurityViolation( "Cannot remove READ from locked entity:" + obj); } } // privileged plays no role since everyone can alter their permissions // (within bounds) return altered; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/2d82f9f2dbb09cc6bae9eb0ffe2e4036e732772b/BasicSecuritySystem.java/clean/components/server/src/ome/security/basic/BasicSecuritySystem.java |
copy.setExpanded(this.isExpanded()); | public TreeImageDisplay copy() { TreeImageSet copy = new TreeImageSet(this.getUserObject()); copy.setChildrenLoaded(new Boolean(this.isChildrenLoaded())); copy.setNumberItems(this.getNumberItems()); copy.setHighLight(this.getHighLight()); copy.setToolTip(this.getToolTip()); Iterator i = this.getChildrenDisplay().iterator(); while (i.hasNext()) { copy.addChildDisplay(((TreeImageDisplay) i.next()).copy()); } return copy; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e14deebd64382fe7de32f39ea661a766a7294394/TreeImageSet.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/browser/TreeImageSet.java |
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public static RubyClass createBignumClass(Ruby ruby) { RubyClass bignumClass = ruby.defineClass("Bignum", ruby.getClasses().getIntegerClass()); //rb_define_method(rb_cBignum, "-@", rb_big_uminus, 0); //rb_define_method(rb_cBignum, "divmod", rb_big_divmod, 1); //rb_define_method(rb_cBignum, "modulo", rb_big_modulo, 1); //rb_define_method(rb_cBignum, "remainder", rb_big_remainder, 1); //rb_define_method(rb_cBignum, "&", rb_big_and, 1); //rb_define_method(rb_cBignum, "|", rb_big_or, 1); //rb_define_method(rb_cBignum, "^", rb_big_xor, 1); // rb_define_method(rb_cBignum, "~", rb_big_neg, 0); // rb_define_method(rb_cBignum, "[]", rb_big_aref, 1); // //rb_define_method(rb_cBignum, "===", rb_big_eq, 1); // rb_define_method(rb_cBignum, "eql?", rb_big_eq, 1); // rb_define_method(rb_cBignum, "abs", rb_big_abs, 0); // rb_define_method(rb_cBignum, "size", rb_big_size, 0); // rb_define_method(rb_cBignum, "zero?", rb_big_zero_p, 0); bignumClass.defineMethod("-@", CallbackFactory.getMethod(RubyBignum.class, "op_uminus")); bignumClass.defineMethod("modulo", CallbackFactory.getMethod(RubyBignum.class, "op_mod", RubyObject.class)); bignumClass.defineMethod("remainder", CallbackFactory.getMethod(RubyBignum.class, "remainder", RubyObject.class)); bignumClass.defineMethod("to_s", CallbackFactory.getMethod(RubyBignum.class, "to_s")); bignumClass.defineMethod("coerce", CallbackFactory.getMethod(RubyBignum.class, "coerce", RubyObject.class)); bignumClass.defineMethod("hash", CallbackFactory.getMethod(RubyBignum.class, "hash")); bignumClass.defineMethod("to_f", CallbackFactory.getMethod(RubyBignum.class, "to_f")); bignumClass.defineMethod("+", CallbackFactory.getMethod(RubyBignum.class, "op_plus", RubyObject.class)); bignumClass.defineMethod("-", CallbackFactory.getMethod(RubyBignum.class, "op_minus", RubyObject.class)); bignumClass.defineMethod("*", CallbackFactory.getMethod(RubyBignum.class, "op_mul", RubyObject.class)); bignumClass.defineMethod("/", CallbackFactory.getMethod(RubyBignum.class, "op_div", RubyObject.class)); bignumClass.defineMethod("%", CallbackFactory.getMethod(RubyBignum.class, "op_mod", RubyObject.class)); bignumClass.defineMethod("&", CallbackFactory.getMethod(RubyBignum.class, "op_and", RubyObject.class)); bignumClass.defineMethod("**", CallbackFactory.getMethod(RubyBignum.class, "op_pow", RubyObject.class)); bignumClass.defineMethod("<<", CallbackFactory.getMethod(RubyBignum.class, "op_lshift", RubyObject.class)); bignumClass.defineMethod(">>", CallbackFactory.getMethod(RubyBignum.class, "op_rshift", RubyObject.class)); bignumClass.defineMethod("==", CallbackFactory.getMethod(RubyBignum.class, "op_equal", RubyObject.class)); bignumClass.defineMethod("<=>", CallbackFactory.getMethod(RubyBignum.class, "op_cmp", RubyObject.class)); bignumClass.defineMethod(">", CallbackFactory.getMethod(RubyBignum.class, "op_gt", RubyObject.class)); bignumClass.defineMethod(">=", CallbackFactory.getMethod(RubyBignum.class, "op_ge", RubyObject.class)); bignumClass.defineMethod("<", CallbackFactory.getMethod(RubyBignum.class, "op_lt", RubyObject.class)); bignumClass.defineMethod("<=", CallbackFactory.getMethod(RubyBignum.class, "op_le", RubyObject.class)); bignumClass.defineMethod("[]", CallbackFactory.getMethod(RubyBignum.class, "aref", RubyInteger.class)); return bignumClass; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/c5505ec7f148e23ccef642f45d2ff27f7d7483c6/RubyBignum.java/clean/org/jruby/RubyBignum.java |
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bignumClass.defineMethod("|", CallbackFactory.getMethod(RubyBignum.class, "op_or", RubyInteger.class)); bignumClass.defineMethod("^", CallbackFactory.getMethod(RubyBignum.class, "op_xor", RubyInteger.class)); | public static RubyClass createBignumClass(Ruby ruby) { RubyClass bignumClass = ruby.defineClass("Bignum", ruby.getClasses().getIntegerClass()); //rb_define_method(rb_cBignum, "-@", rb_big_uminus, 0); //rb_define_method(rb_cBignum, "divmod", rb_big_divmod, 1); //rb_define_method(rb_cBignum, "modulo", rb_big_modulo, 1); //rb_define_method(rb_cBignum, "remainder", rb_big_remainder, 1); //rb_define_method(rb_cBignum, "&", rb_big_and, 1); //rb_define_method(rb_cBignum, "|", rb_big_or, 1); //rb_define_method(rb_cBignum, "^", rb_big_xor, 1); // rb_define_method(rb_cBignum, "~", rb_big_neg, 0); // rb_define_method(rb_cBignum, "[]", rb_big_aref, 1); // //rb_define_method(rb_cBignum, "===", rb_big_eq, 1); // rb_define_method(rb_cBignum, "eql?", rb_big_eq, 1); // rb_define_method(rb_cBignum, "abs", rb_big_abs, 0); // rb_define_method(rb_cBignum, "size", rb_big_size, 0); // rb_define_method(rb_cBignum, "zero?", rb_big_zero_p, 0); bignumClass.defineMethod("-@", CallbackFactory.getMethod(RubyBignum.class, "op_uminus")); bignumClass.defineMethod("modulo", CallbackFactory.getMethod(RubyBignum.class, "op_mod", RubyObject.class)); bignumClass.defineMethod("remainder", CallbackFactory.getMethod(RubyBignum.class, "remainder", RubyObject.class)); bignumClass.defineMethod("to_s", CallbackFactory.getMethod(RubyBignum.class, "to_s")); bignumClass.defineMethod("coerce", CallbackFactory.getMethod(RubyBignum.class, "coerce", RubyObject.class)); bignumClass.defineMethod("hash", CallbackFactory.getMethod(RubyBignum.class, "hash")); bignumClass.defineMethod("to_f", CallbackFactory.getMethod(RubyBignum.class, "to_f")); bignumClass.defineMethod("+", CallbackFactory.getMethod(RubyBignum.class, "op_plus", RubyObject.class)); bignumClass.defineMethod("-", CallbackFactory.getMethod(RubyBignum.class, "op_minus", RubyObject.class)); bignumClass.defineMethod("*", CallbackFactory.getMethod(RubyBignum.class, "op_mul", RubyObject.class)); bignumClass.defineMethod("/", CallbackFactory.getMethod(RubyBignum.class, "op_div", RubyObject.class)); bignumClass.defineMethod("%", CallbackFactory.getMethod(RubyBignum.class, "op_mod", RubyObject.class)); bignumClass.defineMethod("&", CallbackFactory.getMethod(RubyBignum.class, "op_and", RubyObject.class)); bignumClass.defineMethod("**", CallbackFactory.getMethod(RubyBignum.class, "op_pow", RubyObject.class)); bignumClass.defineMethod("<<", CallbackFactory.getMethod(RubyBignum.class, "op_lshift", RubyObject.class)); bignumClass.defineMethod(">>", CallbackFactory.getMethod(RubyBignum.class, "op_rshift", RubyObject.class)); bignumClass.defineMethod("==", CallbackFactory.getMethod(RubyBignum.class, "op_equal", RubyObject.class)); bignumClass.defineMethod("<=>", CallbackFactory.getMethod(RubyBignum.class, "op_cmp", RubyObject.class)); bignumClass.defineMethod(">", CallbackFactory.getMethod(RubyBignum.class, "op_gt", RubyObject.class)); bignumClass.defineMethod(">=", CallbackFactory.getMethod(RubyBignum.class, "op_ge", RubyObject.class)); bignumClass.defineMethod("<", CallbackFactory.getMethod(RubyBignum.class, "op_lt", RubyObject.class)); bignumClass.defineMethod("<=", CallbackFactory.getMethod(RubyBignum.class, "op_le", RubyObject.class)); bignumClass.defineMethod("[]", CallbackFactory.getMethod(RubyBignum.class, "aref", RubyInteger.class)); return bignumClass; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/c5505ec7f148e23ccef642f45d2ff27f7d7483c6/RubyBignum.java/clean/org/jruby/RubyBignum.java |
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case ObjectDefinition.CLONE : | case ObjectDefinition.RBCLONE : | public IRubyObject callIndexed(int index, IRubyObject[] args) { switch (index) { case ObjectDefinition.CLONE : return rbClone(); case ObjectDefinition.DUP : return dup(); case ObjectDefinition.EQUAL : return equal(args[0]); case ObjectDefinition.EXTEND : return extend(args); case ObjectDefinition.FREEZE : return freeze(); case ObjectDefinition.FROZEN : return frozen(); case ObjectDefinition.HASH : return hash(); case ObjectDefinition.ID : return id(); case ObjectDefinition.INSPECT : return inspect(); case ObjectDefinition.INSTANCE_EVAL : return instance_eval(args); case ObjectDefinition.INSTANCE_OF : return instance_of(args[0]); case ObjectDefinition.INSTANCE_VARIABLES : return instance_variables(); case ObjectDefinition.KIND_OF : return kind_of(args[0]); case ObjectDefinition.MATCH : return runtime.getFalse(); case ObjectDefinition.METHOD : return method(args[0]); case ObjectDefinition.METHOD_MISSING : return method_missing(args); case ObjectDefinition.METHODS : return methods(); case ObjectDefinition.NIL : return runtime.getFalse(); case ObjectDefinition.PRIVATE_METHODS : return private_methods(); case ObjectDefinition.PROTECTED_METHODS : return protected_methods(); case ObjectDefinition.RESPOND_TO : return respond_to(args); case ObjectDefinition.SEND : return send(args); case ObjectDefinition.SINGLETON_METHODS : return singleton_methods(); case ObjectDefinition.TAINT : return taint(); case ObjectDefinition.TAINTED : return tainted(); case ObjectDefinition.TO_A : return to_a(); case ObjectDefinition.TO_S : return to_s(); case ObjectDefinition.TYPE : return type(); case ObjectDefinition.UNTAINT : return untaint(); } Asserts.notReached("invalid index '" + index + "'."); return null; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/dcea3e9f2f6ecba04f862dbfb01b220d7890a706/RubyObject.java/clean/src/org/jruby/RubyObject.java |
case ObjectDefinition.FROZEN : | case ObjectDefinition.FROZEN_P : | public IRubyObject callIndexed(int index, IRubyObject[] args) { switch (index) { case ObjectDefinition.CLONE : return rbClone(); case ObjectDefinition.DUP : return dup(); case ObjectDefinition.EQUAL : return equal(args[0]); case ObjectDefinition.EXTEND : return extend(args); case ObjectDefinition.FREEZE : return freeze(); case ObjectDefinition.FROZEN : return frozen(); case ObjectDefinition.HASH : return hash(); case ObjectDefinition.ID : return id(); case ObjectDefinition.INSPECT : return inspect(); case ObjectDefinition.INSTANCE_EVAL : return instance_eval(args); case ObjectDefinition.INSTANCE_OF : return instance_of(args[0]); case ObjectDefinition.INSTANCE_VARIABLES : return instance_variables(); case ObjectDefinition.KIND_OF : return kind_of(args[0]); case ObjectDefinition.MATCH : return runtime.getFalse(); case ObjectDefinition.METHOD : return method(args[0]); case ObjectDefinition.METHOD_MISSING : return method_missing(args); case ObjectDefinition.METHODS : return methods(); case ObjectDefinition.NIL : return runtime.getFalse(); case ObjectDefinition.PRIVATE_METHODS : return private_methods(); case ObjectDefinition.PROTECTED_METHODS : return protected_methods(); case ObjectDefinition.RESPOND_TO : return respond_to(args); case ObjectDefinition.SEND : return send(args); case ObjectDefinition.SINGLETON_METHODS : return singleton_methods(); case ObjectDefinition.TAINT : return taint(); case ObjectDefinition.TAINTED : return tainted(); case ObjectDefinition.TO_A : return to_a(); case ObjectDefinition.TO_S : return to_s(); case ObjectDefinition.TYPE : return type(); case ObjectDefinition.UNTAINT : return untaint(); } Asserts.notReached("invalid index '" + index + "'."); return null; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/dcea3e9f2f6ecba04f862dbfb01b220d7890a706/RubyObject.java/clean/src/org/jruby/RubyObject.java |
} catch (Exception ex) { | } catch (SecurityViolation ex) { | public void testUnallowedPasswordChange() throws Exception { loginRoot(); // create a new user for the test Experimenter e = new Experimenter(); e.setFirstName("user admin setters"); e.setLastName("test"); e.setOmeName(UUID.randomUUID().toString()); iAdmin.createUser(e); loginUser(e.getOmeName()); try { iAdmin.changeUserPassword("root", "THIS SHOULD NOT BE VISIBLE."); fail("secvio!"); } catch (Exception ex) { // ok. } } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/581fcbb2e876beea81d984105a76d82697fe0d23/AdminTest.java/clean/components/server/test/ome/server/itests/sec/AdminTest.java |
pix = (IPixels) applicationContext.getBean("pixelsService"); | pix = factory.getPixelsService(); | protected void onSetUp() throws Exception { super.onSetUp(); //ome.security.Utils.setUserAuth(); pix = (IPixels) applicationContext.getBean("pixelsService"); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/dc8dde051a1e2b716514b3964c9222ce006ebea9/PixelsServiceTest.java/buggy/components/server/test/ome/server/itests/PixelsServiceTest.java |
return newFixnum((int) value ^ (int) (value >> 32)); | return newFixnum(hashCode()); | public RubyFixnum hash() { return newFixnum((int) value ^ (int) (value >> 32)); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/accd69543aeec606dd2490c5f67964fb52c543a5/RubyFixnum.java/clean/src/org/jruby/RubyFixnum.java |
protected boolean managedGroup(boolean locked, boolean privileged, IObject obj, Details previousDetails, Details currentDetails, Details newDetails) { // previous and current have different ids. either change it and return // true if permitted, or throw an exception. if (!HibernateUtils.idEqual(previousDetails.getGroup(), currentDetails.getGroup())) { // !idEquals implies that they aren't both null; if current_group is // null, then it was *probably* not intended, so just fix it and // move on. this goes for root and admins as well. if ( currentDetails.getGroup() == null ) { newDetails.setGroup(previousDetails.getGroup()); return true; } if (locked) { throw new SecurityViolation("Object locked! " + "Cannot change group for entity:" + obj); } // if user is a member of the group or the current user is an admin // or if the entity has been marked as privileged, then use the // current group. else if (memberOfGroups().contains( currentDetails.getGroup().getId()) || currentUserIsAdmin() || privileged) { newDetails.setGroup(currentDetails.getGroup()); return true; } // everyone else can't change them at all. else { throw new SecurityViolation(String.format( "You are not authorized to change " + "the group for %s from %s to %s", obj, previousDetails.getGroup(), currentDetails.getGroup())); } } // previous and current are the same, but we need to set // that value on newDetails. else { // This doesn't need to return true, because it'll only // be used if something else was changed. newDetails.setGroup(previousDetails.getGroup()); } return false; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/96669ca756998116555451076f77a19bb3d1e8df/BasicSecuritySystem.java/clean/components/server/src/ome/security/basic/BasicSecuritySystem.java |
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if ( ! isOwnerOrSupervisor(obj)) | if ( ! isOwnerOrSupervisor(obj)) | protected boolean managedPermissions(boolean locked, boolean privileged, IObject obj, Details previousDetails, Details currentDetails, Details newDetails) { // setup boolean altered = false; Permissions previousP = previousDetails == null ? null : previousDetails.getPermissions(); Permissions currentP = currentDetails == null ? null : currentDetails .getPermissions(); // ignore newDetails permissions. // If the stored perms are null, then we can't validate anything // TODO : is this alright. Should only happen for system types. // Then can silently ignore ?? if (previousP == null) { if (currentP == null) { newDetails.setPermissions(null); altered |= false; // don't need to update } else { newDetails.setPermissions(currentP); altered = true; } } // WORKAROUND for ticket:307 by checking for SOFT below // see https://trac.openmicroscopy.org.uk/omero/ticket/307 // see // http://opensource.atlassian.com/projects/hibernate/browse/HHH-2027 // Users did not enter permission (normal case) so is null OR // in the workaround permissions is SOFT, then // need to copy whole sale those from database. else if (currentP == null || currentP.isSet(Flag.SOFT)) { newDetails.setPermissions(previousP); altered = true; } // if the user has set the permissions (currentDetails), then we should // try to allow that. if it's identical to the current, then there // is no reason to hit the DB. else { // if we need to filter any permissions, do it here! newDetails.setPermissions(currentP); if (!currentP.identical(previousP)) { if ( ! isOwnerOrSupervisor(obj)) throw new SecurityViolation(String.format( "You are not authorized to change " + "the permissions for %s from %s to %s", obj, previousP, currentP)); altered = true; } } // now we've calculated the desired permissions, throw // a security violation if this instance was locked AND // the read permissions have been lowered or if the lock // was removed. if (locked) { if (previousP == null) // if null it can't have been locked. throw new InternalException("Null permissions cannot be locked"); Permissions calculatedP = newDetails.getPermissions(); if (calculatedP != null) { // can't override if ( ! calculatedP.isSet( Flag.LOCKED )) { calculatedP.set(Flag.LOCKED); altered = true; } if ((previousP.isGranted(USER, READ) && !calculatedP.isGranted(USER, READ)) || (previousP.isGranted(GROUP, READ) && !calculatedP .isGranted(GROUP, READ)) || (previousP.isGranted(WORLD, READ) && !calculatedP .isGranted(WORLD, READ))) throw new SecurityViolation( "Cannot remove READ from locked entity:" + obj); } } // privileged plays no role since everyone can alter their permissions // (within bounds) return altered; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/96669ca756998116555451076f77a19bb3d1e8df/BasicSecuritySystem.java/clean/components/server/src/ome/security/basic/BasicSecuritySystem.java |
cd.setAdmin(false); | cd.setAdmin(wasAdmin); | public void runAsAdmin(AdminAction action) { Assert.notNull(action); disable(MergeEventListener.MERGE_EVENT); cd.setAdmin(true); try { action.runAsAdmin(); } finally { cd.setAdmin(false); enable(MergeEventListener.MERGE_EVENT); } } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/96669ca756998116555451076f77a19bb3d1e8df/BasicSecuritySystem.java/clean/components/server/src/ome/security/basic/BasicSecuritySystem.java |
try { | try { | public Main(String[] args) { LongOpt[] longOpts = new LongOpt[2]; longOpts[0] = new LongOpt("instrumentation", LongOpt.REQUIRED_ARGUMENT, null, 'i'); longOpts[1] = new LongOpt("output", LongOpt.REQUIRED_ARGUMENT, null, 'o'); Getopt g = new Getopt(getClass().getName(), args, ":i:o:", longOpts); int c; File destDir = new File(System.getProperty("user.dir")); while ((c = g.getopt()) != -1) { switch (c) { case 'i': System.out.println("cobertura loading: " + g.getOptarg()); try { merge(loadInstrumentation(new FileInputStream(g .getOptarg()))); } catch (FileNotFoundException ex) { logger.warn(ex); } break; case 'o': destDir = new File(g.getOptarg()); destDir.mkdirs(); break; } } saveInstrumentation(destDir); } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/0e9968867b8060fdd72b4fc9c248fcbdc4e96330/Main.java/clean/cobertura/src/net/sourceforge/cobertura/merge/Main.java |
} catch (FileNotFoundException ex) { logger.warn(ex); } | } catch (FileNotFoundException ex) { logger.warn(ex); } | public Main(String[] args) { LongOpt[] longOpts = new LongOpt[2]; longOpts[0] = new LongOpt("instrumentation", LongOpt.REQUIRED_ARGUMENT, null, 'i'); longOpts[1] = new LongOpt("output", LongOpt.REQUIRED_ARGUMENT, null, 'o'); Getopt g = new Getopt(getClass().getName(), args, ":i:o:", longOpts); int c; File destDir = new File(System.getProperty("user.dir")); while ((c = g.getopt()) != -1) { switch (c) { case 'i': System.out.println("cobertura loading: " + g.getOptarg()); try { merge(loadInstrumentation(new FileInputStream(g .getOptarg()))); } catch (FileNotFoundException ex) { logger.warn(ex); } break; case 'o': destDir = new File(g.getOptarg()); destDir.mkdirs(); break; } } saveInstrumentation(destDir); } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/0e9968867b8060fdd72b4fc9c248fcbdc4e96330/Main.java/clean/cobertura/src/net/sourceforge/cobertura/merge/Main.java |
} | } | public Main(String[] args) { LongOpt[] longOpts = new LongOpt[2]; longOpts[0] = new LongOpt("instrumentation", LongOpt.REQUIRED_ARGUMENT, null, 'i'); longOpts[1] = new LongOpt("output", LongOpt.REQUIRED_ARGUMENT, null, 'o'); Getopt g = new Getopt(getClass().getName(), args, ":i:o:", longOpts); int c; File destDir = new File(System.getProperty("user.dir")); while ((c = g.getopt()) != -1) { switch (c) { case 'i': System.out.println("cobertura loading: " + g.getOptarg()); try { merge(loadInstrumentation(new FileInputStream(g .getOptarg()))); } catch (FileNotFoundException ex) { logger.warn(ex); } break; case 'o': destDir = new File(g.getOptarg()); destDir.mkdirs(); break; } } saveInstrumentation(destDir); } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/0e9968867b8060fdd72b4fc9c248fcbdc4e96330/Main.java/clean/cobertura/src/net/sourceforge/cobertura/merge/Main.java |
Copyright.print(System.out); | Header.print(System.out); | public static void main(String[] args) { Copyright.print(System.out); System.out.println("Cobertura instrumentation merge tool"); boolean hasCommandsFile = false; String commandsFileName = null; for (int i = 0; i < args.length; i++) { if (args[i].equals("-commandsfile")) { hasCommandsFile = true; commandsFileName = args[++i]; } } if (hasCommandsFile) { List arglist = new ArrayList(); BufferedReader bufreader = null; try { bufreader = new BufferedReader(new FileReader( commandsFileName)); String line; while ((line = bufreader.readLine()) != null) { arglist.add(line); } } catch (IOException e) { logger.fatal("Unable to read temporary commands file " + commandsFileName + "."); logger.info(e); } finally { if (bufreader != null) { try { bufreader.close(); } catch (IOException e) { } } } args = (String[])arglist.toArray(new String[arglist.size()]); } new Main(args); } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/0e9968867b8060fdd72b4fc9c248fcbdc4e96330/Main.java/clean/cobertura/src/net/sourceforge/cobertura/merge/Main.java |
view.getZField().setText(""+v); | view.getZField().setText(""+v); view.repaint(); | private void synch(int v) { curZ = v; view.getZSlider().setValue(v); view.getZField().setText(""+v); manager.onZChange(curZ); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/b52b1735c990029c4d2115a33258acf4d3c82ae5/XYZNavigatorManager.java/clean/SRC/org/openmicroscopy/shoola/agents/viewer/controls/XYZNavigatorManager.java |
setGroups( new HashSet( exp.collectFromExperimenterGroupLinks( block ))); | setGroups( new HashSet( exp.eachLinkedExperimenterGroup( block ))); | public void copy(IObject model, ModelMapper mapper) { if (model instanceof Experimenter) { Experimenter exp = (Experimenter) model; super.copy(model,mapper); // Fields this.setFirstName(exp.getFirstName()); this.setLastName(exp.getLastName()); this.setEmail(exp.getEmail()); this.setInstitution(exp.getInstitution()); // Collections MapperBlock block = new MapperBlock( mapper ); setGroups( new HashSet( exp.collectFromExperimenterGroupLinks( block ))); } else { throw new IllegalArgumentException( "ExperimenterData can only copy from Experimenter"); } } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/7b5c704279f82fa929138305f70f2f5e6b462c69/ExperimenterData.java/clean/components/shoola-adapter/src/pojos/ExperimenterData.java |
public HTMLReport(ProjectData projectData, File outputDir, File sourceDir) | public HTMLReport(ProjectData projectData, File outputDir, FileFinder finder) | public HTMLReport(ProjectData projectData, File outputDir, File sourceDir) throws Exception { this.destinationDir = outputDir; this.sourceDir = sourceDir; this.projectData = projectData; CopyFiles.copy(outputDir); generatePackageList(); generateSourceFileLists(); generateOverviews(); generateSourceFiles(); } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/12464e2c222b85c4fe40070c50e015403ce5acfe/HTMLReport.java/clean/cobertura/src/net/sourceforge/cobertura/reporting/html/HTMLReport.java |
this.sourceDir = sourceDir; | this.finder = finder; | public HTMLReport(ProjectData projectData, File outputDir, File sourceDir) throws Exception { this.destinationDir = outputDir; this.sourceDir = sourceDir; this.projectData = projectData; CopyFiles.copy(outputDir); generatePackageList(); generateSourceFileLists(); generateOverviews(); generateSourceFiles(); } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/12464e2c222b85c4fe40070c50e015403ce5acfe/HTMLReport.java/clean/cobertura/src/net/sourceforge/cobertura/reporting/html/HTMLReport.java |
File sourceFile = new File(sourceDir, sourceFileData .getName()); | File sourceFile = finder.findFile(sourceFileData.getName()); | private void generateSourceFile(SourceFileData sourceFileData) throws IOException { if (!sourceFileData.containsInstrumentationInfo()) { logger.info("Data file does not contain instrumentation " + "information for the file " + sourceFileData.getName() + ". Ensure this class was instrumented, and this " + "data file contains the instrumentation information."); } String filename = sourceFileData.getNormalizedName() + ".html"; File file = new File(destinationDir, filename); PrintStream out = null; try { out = new PrintStream(new FileOutputStream(file)); out.println("<html>"); out.println("<head>"); out.println("<title>Coverage Report</title>"); out .println("<link title=\"Style\" type=\"text/css\" rel=\"stylesheet\" href=\"css/main.css\" />"); out .println("<script type=\"text/javascript\" src=\"js/popup.js\"></script>"); out.println("</head>"); out.println("<body>"); out.print("<h5>Coverage Report - "); String classPackageName = sourceFileData.getPackageName(); if ((classPackageName != null) && classPackageName.length() > 0) { out.print(sourceFileData.getPackageName() + "."); } out.print(sourceFileData.getBaseName()); out.println("</h5>"); // Output the coverage summary for this class out.println("<p>"); out.println("<table class=\"report\">"); out.println(generateTableHeader("Classes in this File", false)); // TODO: Change this to actually show multiple classes. out.println(generateTableRowForSourceFile(sourceFileData)); out.println("</table>"); out.println("</p>"); // Output this class's source code with syntax and coverage highlighting out.println("<p>"); out .println("<table cellspacing=\"0\" cellpadding=\"0\" class=\"src\">"); BufferedReader br = null; try { File sourceFile = new File(sourceDir, sourceFileData .getName()); br = new BufferedReader(new FileReader(sourceFile)); String lineStr; JavaToHtml javaToHtml = new JavaToHtml(); int lineNumber = 1; while ((lineStr = br.readLine()) != null) { out.println("<tr>"); if (sourceFileData.isValidSourceLineNumber(lineNumber)) { long numberOfHits = sourceFileData .getHitCount(lineNumber); out.println(" <td class=\"numLineCover\"> " + lineNumber + "</td>"); if (numberOfHits > 0) { out .println(" <td class=\"nbHitsCovered\"> " + numberOfHits + "</td>"); out .println(" <td class=\"src\"><pre class=\"src\"> " + javaToHtml.process(lineStr) + "</pre></td>"); } else { out .println(" <td class=\"nbHitsUncovered\"> " + numberOfHits + "</td>"); out .println(" <td class=\"src\"><pre class=\"src\"><span class=\"srcUncovered\"> " + javaToHtml.process(lineStr) + "</span></pre></td>"); } } else { out.println(" <td class=\"numLine\"> " + lineNumber + "</td>"); out.println(" <td class=\"nbHits\"> </td>"); out .println(" <td class=\"src\"><pre class=\"src\"> " + javaToHtml.process(lineStr) + "</pre></td>"); } out.println("</tr>"); lineNumber++; } } finally { if (br != null) { br.close(); } } out.println("</table>"); out.println("</p>"); out.println("<div class=\"footer\">"); out .println("Reports generated by <a href=\"http://cobertura.sourceforge.net/\" target=\"_top\">Cobertura</a>."); out.println("</div>"); out.println("</body>"); out.println("</html>"); } finally { if (out != null) { out.close(); } } } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/12464e2c222b85c4fe40070c50e015403ce5acfe/HTMLReport.java/clean/cobertura/src/net/sourceforge/cobertura/reporting/html/HTMLReport.java |
double ccn = Util.getCCN(new File(sourceDir, packageData .getSourceFileName()), false); | double ccn = 0; | private String generateTableRowForPackage(PackageData packageData) { StringBuffer ret = new StringBuffer(); String url1 = "frame-summary-" + packageData.getName() + ".html"; String url2 = "frame-sourcefiles-" + packageData.getName() + ".html"; double lineCoverage = -1; double branchCoverage = -1; double ccn = Util.getCCN(new File(sourceDir, packageData .getSourceFileName()), false); if (packageData.getNumberOfValidLines() > 0) lineCoverage = packageData.getLineCoverageRate(); if (packageData.getNumberOfValidBranches() > 0) branchCoverage = packageData.getBranchCoverageRate(); ret.append(" <tr>"); ret.append("<td class=\"text\"><a href=\"" + url1 + "\" onClick='parent.sourceFileList.location.href=\"" + url2 + "\"'>" + generatePackageName(packageData) + "</a></td>"); ret.append("<td class=\"value\">" + packageData.getNumberOfChildren() + "</td>"); ret.append(generateTableColumnsFromData(lineCoverage, branchCoverage, ccn)); ret.append("</tr>"); return ret.toString(); } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/12464e2c222b85c4fe40070c50e015403ce5acfe/HTMLReport.java/clean/cobertura/src/net/sourceforge/cobertura/reporting/html/HTMLReport.java |
double ccn = Util.getCCN( new File(sourceDir, sourceFileData.getName()), false); | File file = finder.findFile(sourceFileData.getName()); if (file == null) { System.out.println("FILE IS NULL: " + sourceFileData.getName()); } double ccn = Util.getCCN(file, false); | private String generateTableRowForSourceFile(SourceFileData sourceFileData) { StringBuffer ret = new StringBuffer(); double lineCoverage = -1; double branchCoverage = -1; double ccn = Util.getCCN( new File(sourceDir, sourceFileData.getName()), false); if (sourceFileData.getNumberOfValidLines() > 0) lineCoverage = sourceFileData.getLineCoverageRate(); if (sourceFileData.getNumberOfValidBranches() > 0) branchCoverage = sourceFileData.getBranchCoverageRate(); ret.append(" <tr>"); ret.append("<td class=\"text\"><a href=\"" + sourceFileData.getNormalizedName() + ".html\">" + sourceFileData.getBaseName() + "</a></td>"); ret.append(generateTableColumnsFromData(lineCoverage, branchCoverage, ccn)); ret.append("</tr>"); return ret.toString(); } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/12464e2c222b85c4fe40070c50e015403ce5acfe/HTMLReport.java/clean/cobertura/src/net/sourceforge/cobertura/reporting/html/HTMLReport.java |
private String generateTableRowForTotal() { | private String generateTableRowForTotal() { | private String generateTableRowForTotal() { StringBuffer ret = new StringBuffer(); double lineCoverage = -1; double branchCoverage = -1; double ccn = Util.getCCN(sourceDir, true); if (projectData.getNumberOfValidLines() > 0) lineCoverage = projectData.getLineCoverageRate(); if (projectData.getNumberOfValidBranches() > 0) branchCoverage = projectData.getBranchCoverageRate(); ret.append(" <tr>"); ret.append("<td class=\"text\"><b>All Packages</b></td>"); ret.append("<td class=\"value\">" + projectData.getNumberOfSourceFiles() + "</td>"); ret.append(generateTableColumnsFromData(lineCoverage, branchCoverage, ccn)); ret.append("</tr>"); return ret.toString(); } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/12464e2c222b85c4fe40070c50e015403ce5acfe/HTMLReport.java/clean/cobertura/src/net/sourceforge/cobertura/reporting/html/HTMLReport.java |
double ccn = Util.getCCN(sourceDir, true); | double ccnSum = 0; int count = 0; for (Iterator it = finder.getBaseDirectories().iterator(); it.hasNext(); ) { File basedir = (File) it.next(); ccnSum += Util.getCCN(basedir.getAbsoluteFile(), true); count++; } double ccn = ccnSum / (double) count; | private String generateTableRowForTotal() { StringBuffer ret = new StringBuffer(); double lineCoverage = -1; double branchCoverage = -1; double ccn = Util.getCCN(sourceDir, true); if (projectData.getNumberOfValidLines() > 0) lineCoverage = projectData.getLineCoverageRate(); if (projectData.getNumberOfValidBranches() > 0) branchCoverage = projectData.getBranchCoverageRate(); ret.append(" <tr>"); ret.append("<td class=\"text\"><b>All Packages</b></td>"); ret.append("<td class=\"value\">" + projectData.getNumberOfSourceFiles() + "</td>"); ret.append(generateTableColumnsFromData(lineCoverage, branchCoverage, ccn)); ret.append("</tr>"); return ret.toString(); } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/12464e2c222b85c4fe40070c50e015403ce5acfe/HTMLReport.java/clean/cobertura/src/net/sourceforge/cobertura/reporting/html/HTMLReport.java |
ArrayList ary = new ArrayList(getALength()); for (Node node = this; node != null ; node = node.getNextNode()) { ary.add(node.getHeadNode().eval(ruby, self)); } | ArrayList ary = getArrayList(ruby, self); | public RubyObject[] getArray(Ruby ruby, RubyObject self) { ArrayList ary = new ArrayList(getALength()); for (Node node = this; node != null ; node = node.getNextNode()) { ary.add(node.getHeadNode().eval(ruby, self)); } return (RubyObject[])ary.toArray(new RubyObject[ary.size()]); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/f629550c5947df9c1dbe414645f3dc76bcb70df4/ArrayNode.java/buggy/org/jruby/nodes/ArrayNode.java |
System.setProperty("osgi.framework", URLDecoder.decode(EclipseAdaptor.class.getProtectionDomain().getCodeSource().getLocation().toExternalForm(), "UTF-8")); | protected void setUp() throws Exception { super.setUp(); System.setProperty("osgi.clean", "true"); File osgiDir = new File(basedir, "target/osgi"); osgiDir.mkdirs(); System.setProperty("osgi.configuration.area", osgiDir.getAbsolutePath()); System.setProperty("osgi.install.area", osgiDir.getAbsolutePath()); LocationManager.initializeLocations(); FrameworkAdaptor adaptor = new EclipseAdaptor(null); osgi = new OSGi(adaptor); osgi.launch(); bundleContext = osgi.getBundleContext(); mavenBundleManager = new MavenBundleManager(bundleContext, new File(System.getProperty("user.home"), ".m2/repository")); } | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/c727d83a06b6ed33f6f8dcc3894617a695f75dcb/OSGiTest.java/buggy/osgi/src/test/java/org/xbean/osgi/OSGiTest.java |
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"xbean-spring", "2.1-SNAPSHOT", "jar", Collections.singleton(new Dependency("springframework", "spring", "1.2.4", "jar"))); | "xbean-spring", "2.1-SNAPSHOT", "jar", Collections.singleton(new Dependency("springframework", "spring", "1.2.4", "jar"))); | public void testAddBundel() throws Exception { Project project; Bundle bundle; BundleClassLoader bundleClassLoader; Class clazz = null; project = mavenBundleManager.loadProject("springframework", "spring", "1.2.4"); bundle = mavenBundleManager.installBundle(project); bundleClassLoader = new BundleClassLoader(bundle); clazz = bundle.loadClass("org.springframework.beans.factory.xml.DefaultXmlBeanDefinitionParser"); assertNotNull(clazz); clazz = bundleClassLoader.loadClass("org.springframework.beans.factory.xml.DefaultXmlBeanDefinitionParser"); assertNotNull(clazz); assertSame(bundle, mavenBundleManager.installBundle(project)); project = new Project("org.xbean", "xbean-spring", "2.1-SNAPSHOT", "jar", Collections.singleton(new Dependency("springframework", "spring", "1.2.4", "jar"))); bundle = mavenBundleManager.installBundle(project); bundleClassLoader = new BundleClassLoader(bundle); clazz = bundle.loadClass("org.springframework.beans.factory.xml.DefaultXmlBeanDefinitionParser"); assertNotNull(clazz); clazz = bundleClassLoader.loadClass("org.springframework.beans.factory.xml.DefaultXmlBeanDefinitionParser"); assertNotNull(clazz); clazz = bundle.loadClass("org.xbean.spring.context.impl.XBeanXmlBeanDefinitionParser"); assertNotNull(clazz); clazz = bundleClassLoader.loadClass("org.xbean.spring.context.impl.XBeanXmlBeanDefinitionParser"); assertNotNull(clazz); assertSame(bundle, mavenBundleManager.installBundle(project)); } | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/c727d83a06b6ed33f6f8dcc3894617a695f75dcb/OSGiTest.java/buggy/osgi/src/test/java/org/xbean/osgi/OSGiTest.java |
while (result.size() < ids.size() * percent) { | while (ordered.size() >0 && result.size() < ids.size() * percent) { | Set getPercentOfCollection(final Set ids, double percent) { if (ids.size() == 0) { throw new IllegalArgumentException(emptyColl); } List ordered = new ArrayList(ids); Set result = new HashSet(); while (result.size() < ids.size() * percent) { int choice = randomChoice(ordered.size()); result.add(ordered.remove(choice)); } return result; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/fe14dc19a3cb8aef0082070000d68b42a88ac770/OMEData.java/clean/components/common/src/org/openmicroscopy/omero/tests/OMEData.java |
putRubyClass(ruby, c, newRubyClass); | public static RubyObject m_load_class(Ruby ruby, RubyObject recv, RubyString className, RubyObject[] args) { String javaName = className.getString(); String rubyName = javaName.substring(javaName.lastIndexOf('.') + 1); if (args.length > 0) { rubyName = ((RubyString)args[0]).getString(); } try { Class c = Class.forName(javaName); Map methodMap = new HashMap(); Map singletonMethodMap = new HashMap(); Method[] methods = c.getMethods(); for (int i = 0; i < methods.length; i++) { String methodName = methods[i].getName(); if (methods[i].getDeclaringClass() != Object.class) { if (Modifier.isStatic(methods[i].getModifiers())) { if (singletonMethodMap.get(methods[i].getName()) == null) { singletonMethodMap.put(methods[i].getName(), new LinkedList()); } ((List)singletonMethodMap.get(methods[i].getName())).add(methods[i]); } else { if (methodMap.get(methods[i].getName()) == null) { methodMap.put(methods[i].getName(), new LinkedList()); } ((List)methodMap.get(methods[i].getName())).add(methods[i]); } } } RubyClass newRubyClass = ruby.defineClass(rubyName, (RubyClass)ruby.getRubyClass("JavaObject")); newRubyClass.defineSingletonMethod("new", new JavaConstructor(c.getConstructors())); Iterator iter = methodMap.entrySet().iterator(); while (iter.hasNext()) { Map.Entry entry = (Map.Entry)iter.next(); methods = (Method[])((List)entry.getValue()).toArray(new Method[((List)entry.getValue()).size()]); newRubyClass.defineMethod((String)entry.getKey(), new JavaMethod(methods)); } iter = singletonMethodMap.entrySet().iterator(); while (iter.hasNext()) { Map.Entry entry = (Map.Entry)iter.next(); methods = (Method[])((List)entry.getValue()).toArray(new Method[((List)entry.getValue()).size()]); newRubyClass.defineSingletonMethod((String)entry.getKey(), new JavaMethod(methods, true)); } return newRubyClass; } catch (ClassNotFoundException cnfExcptn) { throw new RubyNameException("cannot found Java class: " + javaName); } catch (SecurityException sExcptn) { } return ruby.getNil(); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/8e00ad1c7ae96f50ae0bd521483380788f891b7b/RubyJavaObject.java/clean/org/jruby/RubyJavaObject.java |
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/*EnhancedDebuggerWindow.PERSISTED_DEBUGGER = true; EnhancedDebuggerWindow.MAX_TABLE_ROWS = 10; XMPPConnection.DEBUG_ENABLED = true; | /* * EnhancedDebuggerWindow.PERSISTED_DEBUGGER = true; * EnhancedDebuggerWindow.MAX_TABLE_ROWS = 10; * XMPPConnection.DEBUG_ENABLED = true; | public static void main(final String[] args) { /*EnhancedDebuggerWindow.PERSISTED_DEBUGGER = true; EnhancedDebuggerWindow.MAX_TABLE_ROWS = 10; XMPPConnection.DEBUG_ENABLED = true; */ String current = System.getProperty("java.library.path"); String classPath = System.getProperty("java.class.path"); // Set UIManager properties for JTree System.setProperty("apple.laf.useScreenMenuBar", "true"); /** Update Library Path **/ StringBuffer buf = new StringBuffer(); buf.append(current); buf.append(";"); final String workingDirectory = System.getProperty("appdir"); if (workingDirectory == null) { RESOURCE_DIRECTORY = new File(USER_HOME, "/Spark/resources").getAbsoluteFile(); BIN_DIRECTORY = new File(USER_HOME, "/Spark/bin").getAbsoluteFile(); LOG_DIRECTORY = new File(USER_HOME, "/Spark/logs").getAbsoluteFile(); RESOURCE_DIRECTORY.mkdirs(); LOG_DIRECTORY.mkdirs(); if (!RESOURCE_DIRECTORY.exists() || !LOG_DIRECTORY.exists()) { JOptionPane.showMessageDialog(new JFrame(), "Unable to create directories necessary for runtime.", "Spark Error", JOptionPane.ERROR_MESSAGE); System.exit(1); } } // This is the Spark.exe or Spark.dmg installed executable. else { // This is the installed executable. File workingDir = new File(workingDirectory); RESOURCE_DIRECTORY = new File(workingDir, "resources").getAbsoluteFile(); BIN_DIRECTORY = new File(workingDir, "bin").getAbsoluteFile(); LOG_DIRECTORY = new File(workingDir, "logs").getAbsoluteFile(); LOG_DIRECTORY.mkdirs(); try { buf.append(RESOURCE_DIRECTORY.getCanonicalPath()).append(";"); } catch (IOException e) { e.printStackTrace(); } } buf.append(classPath); // Update System Properties System.setProperty("java.library.path", buf.toString()); System.setProperty("sun.java2d.noddraw", "true"); SwingUtilities.invokeLater(new Runnable() { public void run() { // Start Application new Spark(); } }); // Handle arguments if (args.length > 0) { argument = args[0]; } } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/7645851bdaa2a933966642360f8bb4b56e708043/Spark.java/buggy/src/java/org/jivesoftware/Spark.java |
public RubyString to_s() { return getRuntime().newString(String.valueOf(getLongValue())); | public RubyString to_s(IRubyObject[] args) { checkArgumentCount(args, 0, 1); int radix = args.length == 0 ? 10 : (int) args[0].convertToInteger().getLongValue(); return getRuntime().newString(Long.toString(getLongValue(), radix)); | public RubyString to_s() { return getRuntime().newString(String.valueOf(getLongValue())); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/5ab345ee94c86afde157cfadd32a78d5899d489f/RubyFixnum.java/buggy/src/org/jruby/RubyFixnum.java |
SparkManager.getMessageEventManager().removeMessageEventRequestListener(messageEventRequestListener); | public void closeChatRoom() { super.closeChatRoom(); SparkManager.getChatManager().removeChat(this); SparkManager.getConnection().removePacketListener(this); } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/5ab4b4e82953b7671ba16fabf843f63553028a0a/ChatRoomImpl.java/buggy/src/java/org/jivesoftware/spark/ui/rooms/ChatRoomImpl.java |
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if(!(args[i+2] instanceof RubyNumeric)) { args[i+2] = args[i+2].callMethod(tc,"to_i"); } | private RubyTime createTime(IRubyObject[] args, boolean gmt) { int len = 6; if (args.length == 10) { args = new IRubyObject[] { args[5], args[4], args[3], args[2], args[1], args[0] }; } else { len = checkArgumentCount(args, 1, 7); } int year = (int)RubyNumeric.num2long(args[0]); int month = 0; if (len > 1) { if (!args[1].isNil()) { if (args[1] instanceof RubyString) { month = -1; for (int i = 0; i < 12; i++) { if (months[i].equalsIgnoreCase(args[1].toString())) { month = i; } } if (month == -1) { try { month = Integer.parseInt(args[1].toString()) - 1; } catch (NumberFormatException nfExcptn) { throw getRuntime().newArgumentError("Argument out of range."); } } } else { month = (int)RubyNumeric.num2long(args[1]) - 1; } } if (0 > month || month > 11) { throw getRuntime().newArgumentError("Argument out of range."); } } int[] int_args = { 1, 0, 0, 0, 0 }; for (int i = 0; len > i + 2; i++) { if (!args[i + 2].isNil()) { int_args[i] = (int)RubyNumeric.num2long(args[i + 2]); if (time_min[i] > int_args[i] || int_args[i] > time_max[i]) { throw getRuntime().newArgumentError("Argument out of range."); } } } Calendar cal = gmt ? Calendar.getInstance(TimeZone.getTimeZone(RubyTime.UTC)) : Calendar.getInstance(); RubyTime time = new RubyTime(getRuntime(), (RubyClass) this, cal); cal.set(year, month, int_args[0], int_args[1], int_args[2], int_args[3]); cal.set(Calendar.MILLISECOND, int_args[4] / 1000); time.setUSec(int_args[4] % 1000); time.callInit(args); return time; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/5a0b5dad1591ff8e27fe66d444a058e1f00880c5/TimeMetaClass.java/buggy/src/org/jruby/runtime/builtin/meta/TimeMetaClass.java |
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public long length() { | public int length() { | public long length() { return list.size(); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/59743974f1f8d5a50153b05647dac2d75d510976/RubyArray.java/clean/org/jruby/RubyArray.java |
for (int i = 0; i < length(); i++) { | int length = length(); for (int i = 0; i < length; i++) { | public RubyString m_inspect() { // HACK +++ StringBuffer sb = new StringBuffer(100); sb.append("["); for (int i = 0; i < length(); i++) { if (i > 0) { sb.append(", "); } sb.append(((RubyString)entry(i).funcall(getRuby().intern("inspect"))).getValue()); } sb.append("]"); return RubyString.m_newString(getRuby(), sb.toString()); // HACK --- } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/59743974f1f8d5a50153b05647dac2d75d510976/RubyArray.java/clean/org/jruby/RubyArray.java |
for (int i = 0; i < items.length; i++) { | for (int i = 0; i < length; i++) { | public RubyArray m_push(RubyObject[] items) { if (items.length == 0) { throw new RubyArgumentException("wrong # of arguments(at least 1)"); } modify(); for (int i = 0; i < items.length; i++) { list.add(items[i]); } return this; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/59743974f1f8d5a50153b05647dac2d75d510976/RubyArray.java/clean/org/jruby/RubyArray.java |
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