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public void store(long idx, RubyObject value) { modify(); if (idx < 0) { idx += list.size(); if (idx < 0) { throw new RubyIndexException("index " + (idx - list.size()) + " out of array"); } } else if (idx > list.size()) { // list.ensureCapacity((int)idx + 1); for (int i = list.size(); i < idx; i++) { list.add(getRuby().getNil()); } } if (idx == list.size()) { list.add(value); } else { list.set((int)idx, value); } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/59743974f1f8d5a50153b05647dac2d75d510976/RubyArray.java/clean/org/jruby/RubyArray.java |
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height = data.length*getRowHeight(); | StatsTableModel(Number[][] data) { this.data = data; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/3db37517e6873d11567ee5822e769ab058e1abed/StatsTable.java/clean/SRC/org/openmicroscopy/shoola/agents/roi/results/stats/StatsTable.java |
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if (e instanceof PropertyException) throw e; | if (e instanceof PropertyException) throw (PropertyException)e; | public void write(org.webmacro.FastWriter out, org.webmacro.Context context) throws org.webmacro.PropertyException, java.io.IOException { try { String s = null; Context c = null; Macro macro = (Macro)_evalTarget.getValue(context); if (_mapExpr == null) { // no map specified, use current context s = (String)macro.evaluate(context); } else { Object o = _mapExpr; if (o instanceof Macro) { o = ((Macro)o).evaluate(context); } if (!(o instanceof java.util.Map)) { throw new PropertyException("The supplied expression did not evaluate to a java.util.Map instance."); } // check for max recursion int recursionDepth = 0; if (context.containsKey("EvalDepth")) { // check the value try { recursionDepth = ((Integer)context.get("EvalDepth")).intValue(); recursionDepth++; if (recursionDepth > MAX_RECURSION_DEPTH) { throw new PropertyException( "ERROR: A recursive call to #eval exceeded the maximum depth of " + MAX_RECURSION_DEPTH); } } catch (Exception e){ // something bad happend, leave depth at default } } java.util.Map outerVars = null; if (context.containsKey("OuterVars")) { // check the value try { outerVars = (java.util.Map)context.get("OuterVars"); } catch (Exception e){ // something bad happend, use vars from calling context } } if (outerVars == null) outerVars = context.getMap(); c = new Context(context.getBroker()); // replace _variables map with supplied map c.setMap((java.util.Map)o); // put current depth into the new context c.put("EvalDepth", recursionDepth); // add a reference to parent context variables c.put("OuterVars", outerVars); // add a reference to this macro c.put("Self", macro); s = (String)macro.evaluate(c); } out.write(s); } catch (Exception e) { if (e instanceof PropertyException) throw e; throw new PropertyException("#eval: Unable to evaluate macro.", e); } } | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/2b6d66377d80cd788de0607d558628f2442c527c/EvalDirective.java/clean/webmacro/src/org/webmacro/directive/EvalDirective.java |
_log.warning (error,e); try { Template errorTemplate = error (c, "WebMacro encountered an error while executing a template:\n" + ((tmpl != null) ? (tmpl + ": ") : ("The template failed to load; double check the " + "TemplatePath in your webmacro.properties file.")) + "\n<pre>" + e + "</pre>\n"); fw.reset (fw.getOutputStream ()); errorTemplate.write (fw, c); } catch (Exception ignore) { } | _log.error (error,e); try { Template errorTemplate = error (c, "WebMacro encountered an error while executing a template:\n" + ((tmpl != null) ? (tmpl + ": ") : ("The template failed to load; double check the " + "TemplatePath in your webmacro.properties file.")) + "\n<pre>" + e + "</pre>\n"); if (fw == null) fw = FastWriter.getInstance(_broker); fw.reset (fw.getOutputStream ()); errorTemplate.write (fw, c); fw.writeTo (c.getResponse().getOutputStream ()); } catch (Exception errExcept) { _log.error("Error writing error template!", errExcept); } | final protected void execute (Template tmpl, WebContext c) { FastWriter fw = null; boolean timing = Flags.PROFILE && c.isTiming (); try { if (timing) c.startTiming ("Template.write", tmpl); try { HttpServletResponse resp= c.getResponse (); Locale locale = (Locale) tmpl.getParam ( WMConstants.TEMPLATE_LOCALE); if (_log.loggingDebug ()) _log.debug ("TemplateLocale="+locale); if (locale != null) { setLocale (resp, locale); } String encoding = (String) tmpl.getParam ( WMConstants.TEMPLATE_OUTPUT_ENCODING); if (encoding==null) { encoding = resp.getCharacterEncoding (); } if (_log.loggingDebug ()) _log.debug ("Using output encoding "+encoding); // get a fastwriter with no output stream, forcing // fastwriter to buffer the output internally. // this is necessary to be compatible with JSDK 2.3 // where you can't call setContentType() after getOutputStream(), // which could be happening during the template evaluation fw = FastWriter.getInstance (_broker, encoding); tmpl.write (fw, c); // now write the FW buffer to the response output stream fw.writeTo (c.getResponse().getOutputStream ()); } finally { if (timing) c.stopTiming (); } if (timing) c.startTiming ("FastWriter.close()"); try { fw.close (); fw = null; } finally { if (timing) c.stopTiming (); } } catch (IOException e) { // ignore disconnect } catch (Exception e) { String error = "WebMacro encountered an error while executing a template:\n" + ((tmpl != null) ? (tmpl + ": " + e + "\n") : ("The template failed to load; double check the " + "TemplatePath in your webmacro.properties file.")); _log.warning (error,e); try { Template errorTemplate = error (c, "WebMacro encountered an error while executing a template:\n" + ((tmpl != null) ? (tmpl + ": ") : ("The template failed to load; double check the " + "TemplatePath in your webmacro.properties file.")) + "\n<pre>" + e + "</pre>\n"); fw.reset (fw.getOutputStream ()); errorTemplate.write (fw, c); } catch (Exception ignore) { // ignored } } finally { try { if (fw != null) { fw.flush (); fw.close (); fw = null; } } catch (Exception e3) { // ignore disconnect } } } | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/a93c6ecece18003e7f79bb1177047ca2eb36cf54/WMServlet.java/buggy/webmacro/src/org/webmacro/servlet/WMServlet.java |
public Quantization_8_16_bit(QuantumDef qd, PixelsType type) { super(qd,type); } | public Quantization_8_16_bit(QuantumDef qd, PixelsType type) { super(qd, type); } | public Quantization_8_16_bit(QuantumDef qd, PixelsType type) { super(qd,type); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/bb6d636d2ab9e2cc7aa62d242570146969ef0e30/Quantization_8_16_bit.java/clean/components/rendering/src/omeis/providers/re/quantum/Quantization_8_16_bit.java |
if (LUT == null) initLUT(); double dStart = getWindowStart(), dEnd = getWindowEnd(); double k = getCurveCoefficient(); double a1 = (qDef.getCdEnd().intValue()-qDef.getCdStart().intValue())/ qDef.getBitResolution().intValue(); int x = min; QuantumMap normalize = new PolynomialMap(); double ysNorm = valueMapper.transform(0, k); double yeNorm = valueMapper.transform(255, k); double aNorm = qDef.getBitResolution().intValue()/(yeNorm-ysNorm); double v = 0, extra = 0; double c0, denum = (dEnd-dStart), num = 255; double S1 = dStart; double decile = (max-min)/SUB_INT; double Q1 = min, Q9 = max; int cdStart = qDef.getCdStart().intValue(), cdEnd = qDef.getCdStart().intValue(); if (getNoiseReduction()) { v = EXTRA; extra = EXTRA; Q1 = min+decile; Q9 = max-decile; S1 = Q1; num = 255-2*EXTRA; denum = Q9-Q1; if (dStart >= Q1 && dEnd > Q9) { denum = (Q9-dStart); S1 = dStart; } else if (dStart >= Q1 && dEnd <= Q9) { denum = dEnd-dStart; S1 = dStart; } else if (dStart < Q1 && dEnd <= Q9) denum = dEnd-Q1; if (qDef.getCdStart().intValue() < EXTRA) cdStart = EXTRA; if (qDef.getCdEnd().intValue() > 255-EXTRA) cdEnd = 255-EXTRA; } c0 = num/denum; for(; x < dStart; ++x) LUT[x-min] = (byte) cdStart; for(; x < dEnd; ++x) { if (x > Q1) { if (x <= Q9) v = c0*(normalize.transform(x, 1)-S1)+extra; else v = cdEnd; } else v = cdStart; v = Approximation.nearestInteger( aNorm*(valueMapper.transform(v, k)-ysNorm)); v = Approximation.nearestInteger(a1*v+qDef.getCdStart().intValue()); LUT[x-min] = (byte) v; } for(; x <= max; ++x) LUT[x-min] = (byte) cdEnd; /* | private void buildLUT() { if (LUT == null) initLUT(); // Comparable assumed to be Integer //domain double dStart = getWindowStart(), dEnd = getWindowEnd(); double k = getCurveCoefficient(); double a1 = (qDef.getCdEnd().intValue()-qDef.getCdStart().intValue())/ qDef.getBitResolution().intValue(); int x = min; QuantumMap normalize = new PolynomialMap(); double ysNorm = valueMapper.transform(0, k); double yeNorm = valueMapper.transform(255, k); double aNorm = qDef.getBitResolution().intValue()/(yeNorm-ysNorm); double v = 0, extra = 0; double c0, denum = (dEnd-dStart), num = 255; double S1 = dStart; double decile = (max-min)/SUB_INT; double Q1 = min, Q9 = max; int cdStart = qDef.getCdStart().intValue(), cdEnd = qDef.getCdStart().intValue(); if (getNoiseReduction()) { v = EXTRA; extra = EXTRA; Q1 = min+decile; Q9 = max-decile; S1 = Q1; num = 255-2*EXTRA; denum = Q9-Q1; if (dStart >= Q1 && dEnd > Q9) { denum = (Q9-dStart); S1 = dStart; } else if (dStart >= Q1 && dEnd <= Q9) { denum = dEnd-dStart; S1 = dStart; } else if (dStart < Q1 && dEnd <= Q9) denum = dEnd-Q1; if (qDef.getCdStart().intValue() < EXTRA) cdStart = EXTRA; if (qDef.getCdEnd().intValue() > 255-EXTRA) cdEnd = 255-EXTRA; } c0 = num/denum; for(; x < dStart; ++x) LUT[x-min] = (byte) cdStart; for(; x < dEnd; ++x) { if (x > Q1) { if (x <= Q9) v = c0*(normalize.transform(x, 1)-S1)+extra; else v = cdEnd; } else v = cdStart; v = Approximation.nearestInteger( aNorm*(valueMapper.transform(v, k)-ysNorm)); v = Approximation.nearestInteger(a1*v+qDef.getCdStart().intValue()); LUT[x-min] = (byte) v; } for(; x <= max; ++x) LUT[x-min] = (byte) cdEnd; /* if (LUT == null) initLUT(); // Comparable assumed to be Integer //domain double dStart = getWindowStart(), dEnd = getWindowEnd(); double k = getCurveCoefficient(); double a1 = (qDef.getCdEnd().intValue()-qDef.getCdStart().intValue())/qDef.getBitResolution().doubleValue(); //Initializes the normalized map. initNormalizedMap(k); //Initializes the decile map. initDecileMap(dStart, dEnd); QuantumMap normalize = new PolynomialMap(); int x = min; double v; //Build the LUT for(; x < dStart; ++x) LUT[x-min] = (byte) qDef.getCdStart().intValue(); for(; x < dEnd; ++x) { if (x > Q1) { if (x <= Q9) { v = aDecile*(normalize.transform(x, 1)-bDecile); v = aNormalized*(valueMapper.transform(v, k)-ysNormalized); v = Approximation.nearestInteger(v); v = Approximation.nearestInteger(a1*v+qDef.getCdStart().intValue()); } else v = qDef.getCdEnd().intValue(); } else v = qDef.getCdStart().intValue(); LUT[x-min] = (byte) v; } for(; x <= max; ++x) LUT[x-min] = (byte) qDef.getCdEnd().intValue(); for (int i = 0; i < LUT.length; i++) { log.info(i + " maps to " + LUT[i]); } */ } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/bb6d636d2ab9e2cc7aa62d242570146969ef0e30/Quantization_8_16_bit.java/clean/components/rendering/src/omeis/providers/re/quantum/Quantization_8_16_bit.java |
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double a1 = (qDef.getCdEnd().intValue()-qDef.getCdStart().intValue())/qDef.getBitResolution().doubleValue(); | double a1 = (qDef.getCdEnd().intValue()-qDef.getCdStart().intValue())/ qDef.getBitResolution().doubleValue(); | private void buildLUT() { if (LUT == null) initLUT(); // Comparable assumed to be Integer //domain double dStart = getWindowStart(), dEnd = getWindowEnd(); double k = getCurveCoefficient(); double a1 = (qDef.getCdEnd().intValue()-qDef.getCdStart().intValue())/ qDef.getBitResolution().intValue(); int x = min; QuantumMap normalize = new PolynomialMap(); double ysNorm = valueMapper.transform(0, k); double yeNorm = valueMapper.transform(255, k); double aNorm = qDef.getBitResolution().intValue()/(yeNorm-ysNorm); double v = 0, extra = 0; double c0, denum = (dEnd-dStart), num = 255; double S1 = dStart; double decile = (max-min)/SUB_INT; double Q1 = min, Q9 = max; int cdStart = qDef.getCdStart().intValue(), cdEnd = qDef.getCdStart().intValue(); if (getNoiseReduction()) { v = EXTRA; extra = EXTRA; Q1 = min+decile; Q9 = max-decile; S1 = Q1; num = 255-2*EXTRA; denum = Q9-Q1; if (dStart >= Q1 && dEnd > Q9) { denum = (Q9-dStart); S1 = dStart; } else if (dStart >= Q1 && dEnd <= Q9) { denum = dEnd-dStart; S1 = dStart; } else if (dStart < Q1 && dEnd <= Q9) denum = dEnd-Q1; if (qDef.getCdStart().intValue() < EXTRA) cdStart = EXTRA; if (qDef.getCdEnd().intValue() > 255-EXTRA) cdEnd = 255-EXTRA; } c0 = num/denum; for(; x < dStart; ++x) LUT[x-min] = (byte) cdStart; for(; x < dEnd; ++x) { if (x > Q1) { if (x <= Q9) v = c0*(normalize.transform(x, 1)-S1)+extra; else v = cdEnd; } else v = cdStart; v = Approximation.nearestInteger( aNorm*(valueMapper.transform(v, k)-ysNorm)); v = Approximation.nearestInteger(a1*v+qDef.getCdStart().intValue()); LUT[x-min] = (byte) v; } for(; x <= max; ++x) LUT[x-min] = (byte) cdEnd; /* if (LUT == null) initLUT(); // Comparable assumed to be Integer //domain double dStart = getWindowStart(), dEnd = getWindowEnd(); double k = getCurveCoefficient(); double a1 = (qDef.getCdEnd().intValue()-qDef.getCdStart().intValue())/qDef.getBitResolution().doubleValue(); //Initializes the normalized map. initNormalizedMap(k); //Initializes the decile map. initDecileMap(dStart, dEnd); QuantumMap normalize = new PolynomialMap(); int x = min; double v; //Build the LUT for(; x < dStart; ++x) LUT[x-min] = (byte) qDef.getCdStart().intValue(); for(; x < dEnd; ++x) { if (x > Q1) { if (x <= Q9) { v = aDecile*(normalize.transform(x, 1)-bDecile); v = aNormalized*(valueMapper.transform(v, k)-ysNormalized); v = Approximation.nearestInteger(v); v = Approximation.nearestInteger(a1*v+qDef.getCdStart().intValue()); } else v = qDef.getCdEnd().intValue(); } else v = qDef.getCdStart().intValue(); LUT[x-min] = (byte) v; } for(; x <= max; ++x) LUT[x-min] = (byte) qDef.getCdEnd().intValue(); for (int i = 0; i < LUT.length; i++) { log.info(i + " maps to " + LUT[i]); } */ } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/bb6d636d2ab9e2cc7aa62d242570146969ef0e30/Quantization_8_16_bit.java/clean/components/rendering/src/omeis/providers/re/quantum/Quantization_8_16_bit.java |
initDecileMap(dStart, dEnd); | double v = initDecileMap(dStart, dEnd); | private void buildLUT() { if (LUT == null) initLUT(); // Comparable assumed to be Integer //domain double dStart = getWindowStart(), dEnd = getWindowEnd(); double k = getCurveCoefficient(); double a1 = (qDef.getCdEnd().intValue()-qDef.getCdStart().intValue())/ qDef.getBitResolution().intValue(); int x = min; QuantumMap normalize = new PolynomialMap(); double ysNorm = valueMapper.transform(0, k); double yeNorm = valueMapper.transform(255, k); double aNorm = qDef.getBitResolution().intValue()/(yeNorm-ysNorm); double v = 0, extra = 0; double c0, denum = (dEnd-dStart), num = 255; double S1 = dStart; double decile = (max-min)/SUB_INT; double Q1 = min, Q9 = max; int cdStart = qDef.getCdStart().intValue(), cdEnd = qDef.getCdStart().intValue(); if (getNoiseReduction()) { v = EXTRA; extra = EXTRA; Q1 = min+decile; Q9 = max-decile; S1 = Q1; num = 255-2*EXTRA; denum = Q9-Q1; if (dStart >= Q1 && dEnd > Q9) { denum = (Q9-dStart); S1 = dStart; } else if (dStart >= Q1 && dEnd <= Q9) { denum = dEnd-dStart; S1 = dStart; } else if (dStart < Q1 && dEnd <= Q9) denum = dEnd-Q1; if (qDef.getCdStart().intValue() < EXTRA) cdStart = EXTRA; if (qDef.getCdEnd().intValue() > 255-EXTRA) cdEnd = 255-EXTRA; } c0 = num/denum; for(; x < dStart; ++x) LUT[x-min] = (byte) cdStart; for(; x < dEnd; ++x) { if (x > Q1) { if (x <= Q9) v = c0*(normalize.transform(x, 1)-S1)+extra; else v = cdEnd; } else v = cdStart; v = Approximation.nearestInteger( aNorm*(valueMapper.transform(v, k)-ysNorm)); v = Approximation.nearestInteger(a1*v+qDef.getCdStart().intValue()); LUT[x-min] = (byte) v; } for(; x <= max; ++x) LUT[x-min] = (byte) cdEnd; /* if (LUT == null) initLUT(); // Comparable assumed to be Integer //domain double dStart = getWindowStart(), dEnd = getWindowEnd(); double k = getCurveCoefficient(); double a1 = (qDef.getCdEnd().intValue()-qDef.getCdStart().intValue())/qDef.getBitResolution().doubleValue(); //Initializes the normalized map. initNormalizedMap(k); //Initializes the decile map. initDecileMap(dStart, dEnd); QuantumMap normalize = new PolynomialMap(); int x = min; double v; //Build the LUT for(; x < dStart; ++x) LUT[x-min] = (byte) qDef.getCdStart().intValue(); for(; x < dEnd; ++x) { if (x > Q1) { if (x <= Q9) { v = aDecile*(normalize.transform(x, 1)-bDecile); v = aNormalized*(valueMapper.transform(v, k)-ysNormalized); v = Approximation.nearestInteger(v); v = Approximation.nearestInteger(a1*v+qDef.getCdStart().intValue()); } else v = qDef.getCdEnd().intValue(); } else v = qDef.getCdStart().intValue(); LUT[x-min] = (byte) v; } for(; x <= max; ++x) LUT[x-min] = (byte) qDef.getCdEnd().intValue(); for (int i = 0; i < LUT.length; i++) { log.info(i + " maps to " + LUT[i]); } */ } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/bb6d636d2ab9e2cc7aa62d242570146969ef0e30/Quantization_8_16_bit.java/clean/components/rendering/src/omeis/providers/re/quantum/Quantization_8_16_bit.java |
double v; | private void buildLUT() { if (LUT == null) initLUT(); // Comparable assumed to be Integer //domain double dStart = getWindowStart(), dEnd = getWindowEnd(); double k = getCurveCoefficient(); double a1 = (qDef.getCdEnd().intValue()-qDef.getCdStart().intValue())/ qDef.getBitResolution().intValue(); int x = min; QuantumMap normalize = new PolynomialMap(); double ysNorm = valueMapper.transform(0, k); double yeNorm = valueMapper.transform(255, k); double aNorm = qDef.getBitResolution().intValue()/(yeNorm-ysNorm); double v = 0, extra = 0; double c0, denum = (dEnd-dStart), num = 255; double S1 = dStart; double decile = (max-min)/SUB_INT; double Q1 = min, Q9 = max; int cdStart = qDef.getCdStart().intValue(), cdEnd = qDef.getCdStart().intValue(); if (getNoiseReduction()) { v = EXTRA; extra = EXTRA; Q1 = min+decile; Q9 = max-decile; S1 = Q1; num = 255-2*EXTRA; denum = Q9-Q1; if (dStart >= Q1 && dEnd > Q9) { denum = (Q9-dStart); S1 = dStart; } else if (dStart >= Q1 && dEnd <= Q9) { denum = dEnd-dStart; S1 = dStart; } else if (dStart < Q1 && dEnd <= Q9) denum = dEnd-Q1; if (qDef.getCdStart().intValue() < EXTRA) cdStart = EXTRA; if (qDef.getCdEnd().intValue() > 255-EXTRA) cdEnd = 255-EXTRA; } c0 = num/denum; for(; x < dStart; ++x) LUT[x-min] = (byte) cdStart; for(; x < dEnd; ++x) { if (x > Q1) { if (x <= Q9) v = c0*(normalize.transform(x, 1)-S1)+extra; else v = cdEnd; } else v = cdStart; v = Approximation.nearestInteger( aNorm*(valueMapper.transform(v, k)-ysNorm)); v = Approximation.nearestInteger(a1*v+qDef.getCdStart().intValue()); LUT[x-min] = (byte) v; } for(; x <= max; ++x) LUT[x-min] = (byte) cdEnd; /* if (LUT == null) initLUT(); // Comparable assumed to be Integer //domain double dStart = getWindowStart(), dEnd = getWindowEnd(); double k = getCurveCoefficient(); double a1 = (qDef.getCdEnd().intValue()-qDef.getCdStart().intValue())/qDef.getBitResolution().doubleValue(); //Initializes the normalized map. initNormalizedMap(k); //Initializes the decile map. initDecileMap(dStart, dEnd); QuantumMap normalize = new PolynomialMap(); int x = min; double v; //Build the LUT for(; x < dStart; ++x) LUT[x-min] = (byte) qDef.getCdStart().intValue(); for(; x < dEnd; ++x) { if (x > Q1) { if (x <= Q9) { v = aDecile*(normalize.transform(x, 1)-bDecile); v = aNormalized*(valueMapper.transform(v, k)-ysNormalized); v = Approximation.nearestInteger(v); v = Approximation.nearestInteger(a1*v+qDef.getCdStart().intValue()); } else v = qDef.getCdEnd().intValue(); } else v = qDef.getCdStart().intValue(); LUT[x-min] = (byte) v; } for(; x <= max; ++x) LUT[x-min] = (byte) qDef.getCdEnd().intValue(); for (int i = 0; i < LUT.length; i++) { log.info(i + " maps to " + LUT[i]); } */ } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/bb6d636d2ab9e2cc7aa62d242570146969ef0e30/Quantization_8_16_bit.java/clean/components/rendering/src/omeis/providers/re/quantum/Quantization_8_16_bit.java |
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for(; x < dStart; ++x) LUT[x-min] = (byte) qDef.getCdStart().intValue(); | for(; x < dStart; ++x) LUT[x-min] = (byte) cdStart; | private void buildLUT() { if (LUT == null) initLUT(); // Comparable assumed to be Integer //domain double dStart = getWindowStart(), dEnd = getWindowEnd(); double k = getCurveCoefficient(); double a1 = (qDef.getCdEnd().intValue()-qDef.getCdStart().intValue())/ qDef.getBitResolution().intValue(); int x = min; QuantumMap normalize = new PolynomialMap(); double ysNorm = valueMapper.transform(0, k); double yeNorm = valueMapper.transform(255, k); double aNorm = qDef.getBitResolution().intValue()/(yeNorm-ysNorm); double v = 0, extra = 0; double c0, denum = (dEnd-dStart), num = 255; double S1 = dStart; double decile = (max-min)/SUB_INT; double Q1 = min, Q9 = max; int cdStart = qDef.getCdStart().intValue(), cdEnd = qDef.getCdStart().intValue(); if (getNoiseReduction()) { v = EXTRA; extra = EXTRA; Q1 = min+decile; Q9 = max-decile; S1 = Q1; num = 255-2*EXTRA; denum = Q9-Q1; if (dStart >= Q1 && dEnd > Q9) { denum = (Q9-dStart); S1 = dStart; } else if (dStart >= Q1 && dEnd <= Q9) { denum = dEnd-dStart; S1 = dStart; } else if (dStart < Q1 && dEnd <= Q9) denum = dEnd-Q1; if (qDef.getCdStart().intValue() < EXTRA) cdStart = EXTRA; if (qDef.getCdEnd().intValue() > 255-EXTRA) cdEnd = 255-EXTRA; } c0 = num/denum; for(; x < dStart; ++x) LUT[x-min] = (byte) cdStart; for(; x < dEnd; ++x) { if (x > Q1) { if (x <= Q9) v = c0*(normalize.transform(x, 1)-S1)+extra; else v = cdEnd; } else v = cdStart; v = Approximation.nearestInteger( aNorm*(valueMapper.transform(v, k)-ysNorm)); v = Approximation.nearestInteger(a1*v+qDef.getCdStart().intValue()); LUT[x-min] = (byte) v; } for(; x <= max; ++x) LUT[x-min] = (byte) cdEnd; /* if (LUT == null) initLUT(); // Comparable assumed to be Integer //domain double dStart = getWindowStart(), dEnd = getWindowEnd(); double k = getCurveCoefficient(); double a1 = (qDef.getCdEnd().intValue()-qDef.getCdStart().intValue())/qDef.getBitResolution().doubleValue(); //Initializes the normalized map. initNormalizedMap(k); //Initializes the decile map. initDecileMap(dStart, dEnd); QuantumMap normalize = new PolynomialMap(); int x = min; double v; //Build the LUT for(; x < dStart; ++x) LUT[x-min] = (byte) qDef.getCdStart().intValue(); for(; x < dEnd; ++x) { if (x > Q1) { if (x <= Q9) { v = aDecile*(normalize.transform(x, 1)-bDecile); v = aNormalized*(valueMapper.transform(v, k)-ysNormalized); v = Approximation.nearestInteger(v); v = Approximation.nearestInteger(a1*v+qDef.getCdStart().intValue()); } else v = qDef.getCdEnd().intValue(); } else v = qDef.getCdStart().intValue(); LUT[x-min] = (byte) v; } for(; x <= max; ++x) LUT[x-min] = (byte) qDef.getCdEnd().intValue(); for (int i = 0; i < LUT.length; i++) { log.info(i + " maps to " + LUT[i]); } */ } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/bb6d636d2ab9e2cc7aa62d242570146969ef0e30/Quantization_8_16_bit.java/clean/components/rendering/src/omeis/providers/re/quantum/Quantization_8_16_bit.java |
if (x <= Q9) { v = aDecile*(normalize.transform(x, 1)-bDecile); v = aNormalized*(valueMapper.transform(v, k)-ysNormalized); v = Approximation.nearestInteger(v); v = Approximation.nearestInteger(a1*v+qDef.getCdStart().intValue()); } else v = qDef.getCdEnd().intValue(); } else v = qDef.getCdStart().intValue(); | if (x <= Q9) v = aDecile*normalize.transform(x, 1)-bDecile; else v = cdEnd; } else v = cdStart; v = aNormalized*(valueMapper.transform(v, k)-ysNormalized); v = Approximation.nearestInteger(v); v = Approximation.nearestInteger(a1*v+cdStart); | private void buildLUT() { if (LUT == null) initLUT(); // Comparable assumed to be Integer //domain double dStart = getWindowStart(), dEnd = getWindowEnd(); double k = getCurveCoefficient(); double a1 = (qDef.getCdEnd().intValue()-qDef.getCdStart().intValue())/ qDef.getBitResolution().intValue(); int x = min; QuantumMap normalize = new PolynomialMap(); double ysNorm = valueMapper.transform(0, k); double yeNorm = valueMapper.transform(255, k); double aNorm = qDef.getBitResolution().intValue()/(yeNorm-ysNorm); double v = 0, extra = 0; double c0, denum = (dEnd-dStart), num = 255; double S1 = dStart; double decile = (max-min)/SUB_INT; double Q1 = min, Q9 = max; int cdStart = qDef.getCdStart().intValue(), cdEnd = qDef.getCdStart().intValue(); if (getNoiseReduction()) { v = EXTRA; extra = EXTRA; Q1 = min+decile; Q9 = max-decile; S1 = Q1; num = 255-2*EXTRA; denum = Q9-Q1; if (dStart >= Q1 && dEnd > Q9) { denum = (Q9-dStart); S1 = dStart; } else if (dStart >= Q1 && dEnd <= Q9) { denum = dEnd-dStart; S1 = dStart; } else if (dStart < Q1 && dEnd <= Q9) denum = dEnd-Q1; if (qDef.getCdStart().intValue() < EXTRA) cdStart = EXTRA; if (qDef.getCdEnd().intValue() > 255-EXTRA) cdEnd = 255-EXTRA; } c0 = num/denum; for(; x < dStart; ++x) LUT[x-min] = (byte) cdStart; for(; x < dEnd; ++x) { if (x > Q1) { if (x <= Q9) v = c0*(normalize.transform(x, 1)-S1)+extra; else v = cdEnd; } else v = cdStart; v = Approximation.nearestInteger( aNorm*(valueMapper.transform(v, k)-ysNorm)); v = Approximation.nearestInteger(a1*v+qDef.getCdStart().intValue()); LUT[x-min] = (byte) v; } for(; x <= max; ++x) LUT[x-min] = (byte) cdEnd; /* if (LUT == null) initLUT(); // Comparable assumed to be Integer //domain double dStart = getWindowStart(), dEnd = getWindowEnd(); double k = getCurveCoefficient(); double a1 = (qDef.getCdEnd().intValue()-qDef.getCdStart().intValue())/qDef.getBitResolution().doubleValue(); //Initializes the normalized map. initNormalizedMap(k); //Initializes the decile map. initDecileMap(dStart, dEnd); QuantumMap normalize = new PolynomialMap(); int x = min; double v; //Build the LUT for(; x < dStart; ++x) LUT[x-min] = (byte) qDef.getCdStart().intValue(); for(; x < dEnd; ++x) { if (x > Q1) { if (x <= Q9) { v = aDecile*(normalize.transform(x, 1)-bDecile); v = aNormalized*(valueMapper.transform(v, k)-ysNormalized); v = Approximation.nearestInteger(v); v = Approximation.nearestInteger(a1*v+qDef.getCdStart().intValue()); } else v = qDef.getCdEnd().intValue(); } else v = qDef.getCdStart().intValue(); LUT[x-min] = (byte) v; } for(; x <= max; ++x) LUT[x-min] = (byte) qDef.getCdEnd().intValue(); for (int i = 0; i < LUT.length; i++) { log.info(i + " maps to " + LUT[i]); } */ } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/bb6d636d2ab9e2cc7aa62d242570146969ef0e30/Quantization_8_16_bit.java/clean/components/rendering/src/omeis/providers/re/quantum/Quantization_8_16_bit.java |
for(; x <= max; ++x) LUT[x-min] = (byte) qDef.getCdEnd().intValue(); for (int i = 0; i < LUT.length; i++) { log.info(i + " maps to " + LUT[i]); } */ | for(; x <= max; ++x) LUT[x-min] = (byte) cdEnd; | private void buildLUT() { if (LUT == null) initLUT(); // Comparable assumed to be Integer //domain double dStart = getWindowStart(), dEnd = getWindowEnd(); double k = getCurveCoefficient(); double a1 = (qDef.getCdEnd().intValue()-qDef.getCdStart().intValue())/ qDef.getBitResolution().intValue(); int x = min; QuantumMap normalize = new PolynomialMap(); double ysNorm = valueMapper.transform(0, k); double yeNorm = valueMapper.transform(255, k); double aNorm = qDef.getBitResolution().intValue()/(yeNorm-ysNorm); double v = 0, extra = 0; double c0, denum = (dEnd-dStart), num = 255; double S1 = dStart; double decile = (max-min)/SUB_INT; double Q1 = min, Q9 = max; int cdStart = qDef.getCdStart().intValue(), cdEnd = qDef.getCdStart().intValue(); if (getNoiseReduction()) { v = EXTRA; extra = EXTRA; Q1 = min+decile; Q9 = max-decile; S1 = Q1; num = 255-2*EXTRA; denum = Q9-Q1; if (dStart >= Q1 && dEnd > Q9) { denum = (Q9-dStart); S1 = dStart; } else if (dStart >= Q1 && dEnd <= Q9) { denum = dEnd-dStart; S1 = dStart; } else if (dStart < Q1 && dEnd <= Q9) denum = dEnd-Q1; if (qDef.getCdStart().intValue() < EXTRA) cdStart = EXTRA; if (qDef.getCdEnd().intValue() > 255-EXTRA) cdEnd = 255-EXTRA; } c0 = num/denum; for(; x < dStart; ++x) LUT[x-min] = (byte) cdStart; for(; x < dEnd; ++x) { if (x > Q1) { if (x <= Q9) v = c0*(normalize.transform(x, 1)-S1)+extra; else v = cdEnd; } else v = cdStart; v = Approximation.nearestInteger( aNorm*(valueMapper.transform(v, k)-ysNorm)); v = Approximation.nearestInteger(a1*v+qDef.getCdStart().intValue()); LUT[x-min] = (byte) v; } for(; x <= max; ++x) LUT[x-min] = (byte) cdEnd; /* if (LUT == null) initLUT(); // Comparable assumed to be Integer //domain double dStart = getWindowStart(), dEnd = getWindowEnd(); double k = getCurveCoefficient(); double a1 = (qDef.getCdEnd().intValue()-qDef.getCdStart().intValue())/qDef.getBitResolution().doubleValue(); //Initializes the normalized map. initNormalizedMap(k); //Initializes the decile map. initDecileMap(dStart, dEnd); QuantumMap normalize = new PolynomialMap(); int x = min; double v; //Build the LUT for(; x < dStart; ++x) LUT[x-min] = (byte) qDef.getCdStart().intValue(); for(; x < dEnd; ++x) { if (x > Q1) { if (x <= Q9) { v = aDecile*(normalize.transform(x, 1)-bDecile); v = aNormalized*(valueMapper.transform(v, k)-ysNormalized); v = Approximation.nearestInteger(v); v = Approximation.nearestInteger(a1*v+qDef.getCdStart().intValue()); } else v = qDef.getCdEnd().intValue(); } else v = qDef.getCdStart().intValue(); LUT[x-min] = (byte) v; } for(; x <= max; ++x) LUT[x-min] = (byte) qDef.getCdEnd().intValue(); for (int i = 0; i < LUT.length; i++) { log.info(i + " maps to " + LUT[i]); } */ } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/bb6d636d2ab9e2cc7aa62d242570146969ef0e30/Quantization_8_16_bit.java/clean/components/rendering/src/omeis/providers/re/quantum/Quantization_8_16_bit.java |
private void initDecileMap(double dStart, double dEnd) | private double initDecileMap(double dStart, double dEnd) | private void initDecileMap(double dStart, double dEnd) { double denum = (dEnd-dStart), num = MAX; double decile = ((double) (max-min))/DECILE; Q1 = min; Q9 = max; bDecile = dStart; if (getNoiseReduction()) { Q1 = min+decile; Q9 = max-decile; denum = Q9-Q1; if (dStart >= Q1 && dEnd > Q9) { denum = (Q9-dStart); bDecile = dStart; } else if (dStart >= Q1 && dEnd <= Q9) { denum = dEnd-dStart; bDecile = dStart; } else if (dStart < Q1 && dEnd <= Q9) { denum = dEnd-Q1; bDecile = Q1; } } aDecile = num/denum; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/bb6d636d2ab9e2cc7aa62d242570146969ef0e30/Quantization_8_16_bit.java/clean/components/rendering/src/omeis/providers/re/quantum/Quantization_8_16_bit.java |
bDecile = dStart; | private void initDecileMap(double dStart, double dEnd) { double denum = (dEnd-dStart), num = MAX; double decile = ((double) (max-min))/DECILE; Q1 = min; Q9 = max; bDecile = dStart; if (getNoiseReduction()) { Q1 = min+decile; Q9 = max-decile; denum = Q9-Q1; if (dStart >= Q1 && dEnd > Q9) { denum = (Q9-dStart); bDecile = dStart; } else if (dStart >= Q1 && dEnd <= Q9) { denum = dEnd-dStart; bDecile = dStart; } else if (dStart < Q1 && dEnd <= Q9) { denum = dEnd-Q1; bDecile = Q1; } } aDecile = num/denum; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/bb6d636d2ab9e2cc7aa62d242570146969ef0e30/Quantization_8_16_bit.java/clean/components/rendering/src/omeis/providers/re/quantum/Quantization_8_16_bit.java |
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bDecile = dStart; | b = dStart; | private void initDecileMap(double dStart, double dEnd) { double denum = (dEnd-dStart), num = MAX; double decile = ((double) (max-min))/DECILE; Q1 = min; Q9 = max; bDecile = dStart; if (getNoiseReduction()) { Q1 = min+decile; Q9 = max-decile; denum = Q9-Q1; if (dStart >= Q1 && dEnd > Q9) { denum = (Q9-dStart); bDecile = dStart; } else if (dStart >= Q1 && dEnd <= Q9) { denum = dEnd-dStart; bDecile = dStart; } else if (dStart < Q1 && dEnd <= Q9) { denum = dEnd-Q1; bDecile = Q1; } } aDecile = num/denum; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/bb6d636d2ab9e2cc7aa62d242570146969ef0e30/Quantization_8_16_bit.java/clean/components/rendering/src/omeis/providers/re/quantum/Quantization_8_16_bit.java |
bDecile = dStart; | b = dStart; | private void initDecileMap(double dStart, double dEnd) { double denum = (dEnd-dStart), num = MAX; double decile = ((double) (max-min))/DECILE; Q1 = min; Q9 = max; bDecile = dStart; if (getNoiseReduction()) { Q1 = min+decile; Q9 = max-decile; denum = Q9-Q1; if (dStart >= Q1 && dEnd > Q9) { denum = (Q9-dStart); bDecile = dStart; } else if (dStart >= Q1 && dEnd <= Q9) { denum = dEnd-dStart; bDecile = dStart; } else if (dStart < Q1 && dEnd <= Q9) { denum = dEnd-Q1; bDecile = Q1; } } aDecile = num/denum; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/bb6d636d2ab9e2cc7aa62d242570146969ef0e30/Quantization_8_16_bit.java/clean/components/rendering/src/omeis/providers/re/quantum/Quantization_8_16_bit.java |
bDecile = Q1; | private void initDecileMap(double dStart, double dEnd) { double denum = (dEnd-dStart), num = MAX; double decile = ((double) (max-min))/DECILE; Q1 = min; Q9 = max; bDecile = dStart; if (getNoiseReduction()) { Q1 = min+decile; Q9 = max-decile; denum = Q9-Q1; if (dStart >= Q1 && dEnd > Q9) { denum = (Q9-dStart); bDecile = dStart; } else if (dStart >= Q1 && dEnd <= Q9) { denum = dEnd-dStart; bDecile = dStart; } else if (dStart < Q1 && dEnd <= Q9) { denum = dEnd-Q1; bDecile = Q1; } } aDecile = num/denum; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/bb6d636d2ab9e2cc7aa62d242570146969ef0e30/Quantization_8_16_bit.java/clean/components/rendering/src/omeis/providers/re/quantum/Quantization_8_16_bit.java |
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bDecile = aDecile*b-e; return v; | private void initDecileMap(double dStart, double dEnd) { double denum = (dEnd-dStart), num = MAX; double decile = ((double) (max-min))/DECILE; Q1 = min; Q9 = max; bDecile = dStart; if (getNoiseReduction()) { Q1 = min+decile; Q9 = max-decile; denum = Q9-Q1; if (dStart >= Q1 && dEnd > Q9) { denum = (Q9-dStart); bDecile = dStart; } else if (dStart >= Q1 && dEnd <= Q9) { denum = dEnd-dStart; bDecile = dStart; } else if (dStart < Q1 && dEnd <= Q9) { denum = dEnd-Q1; bDecile = Q1; } } aDecile = num/denum; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/bb6d636d2ab9e2cc7aa62d242570146969ef0e30/Quantization_8_16_bit.java/clean/components/rendering/src/omeis/providers/re/quantum/Quantization_8_16_bit.java |
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aNormalized = qDef.getBitResolution().floatValue()/(yeNormalized-ysNormalized); | aNormalized = qDef.getBitResolution().intValue()/ (yeNormalized-ysNormalized); | private void initNormalizedMap(double k) { ysNormalized = valueMapper.transform(MIN, k); yeNormalized = valueMapper.transform(MAX, k); aNormalized = qDef.getBitResolution().floatValue()/(yeNormalized-ysNormalized); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/bb6d636d2ab9e2cc7aa62d242570146969ef0e30/Quantization_8_16_bit.java/clean/components/rendering/src/omeis/providers/re/quantum/Quantization_8_16_bit.java |
rb_define_method(rb_cString, "capitalize", rb_str_capitalize, 0); rb_define_method(rb_cString, "swapcase", rb_str_swapcase, 0); | */ stringClass.defineMethod("capitalize", getMethod("m_capitalize", false)); /*rb_define_method(rb_cString, "swapcase", rb_str_swapcase, 0); | public static RubyClass createStringClass(Ruby ruby) { RubyClass stringClass = ruby.defineClass("String", ruby.getObjectClass()); stringClass.includeModule(ruby.getRubyClass("Comparable")); // stringClass.includeModule(ruby.getModules().getEnumerable()); stringClass.defineSingletonMethod("new", getSingletonMethod("m_new", true)); stringClass.defineMethod("initialize", getMethod("m_replace", RubyString.class));/* rb_define_method(rb_cString, "clone", rb_str_clone, 0); rb_define_method(rb_cString, "dup", rb_str_dup, 0);*/ stringClass.defineMethod("<=>", getMethod("op_cmp", RubyObject.class)); stringClass.defineMethod("==", getMethod("m_equal", RubyObject.class)); stringClass.defineMethod("===", getMethod("m_equal", RubyObject.class)); stringClass.defineMethod("eql?", getMethod("m_equal", RubyObject.class)); /*rb_define_method(rb_cString, "hash", rb_str_hash_m, 0); rb_define_method(rb_cString, "+", rb_str_plus, 1); rb_define_method(rb_cString, "*", rb_str_times, 1); rb_define_method(rb_cString, "%", rb_str_format, 1); */ stringClass.defineMethod("[]", getMethod("m_slice", true)); /*rb_define_method(rb_cString, "[]=", rb_str_aset_m, -1); rb_define_method(rb_cString, "length", rb_str_length, 0); rb_define_method(rb_cString, "size", rb_str_length, 0); rb_define_method(rb_cString, "empty?", rb_str_empty, 0); rb_define_method(rb_cString, "=~", rb_str_match, 1); rb_define_method(rb_cString, "~", rb_str_match2, 0); rb_define_method(rb_cString, "succ", rb_str_succ, 0); rb_define_method(rb_cString, "succ!", rb_str_succ_bang, 0); rb_define_method(rb_cString, "next", rb_str_succ, 0); rb_define_method(rb_cString, "next!", rb_str_succ_bang, 0); rb_define_method(rb_cString, "upto", rb_str_upto_m, 1); rb_define_method(rb_cString, "index", rb_str_index_m, -1); rb_define_method(rb_cString, "rindex", rb_str_rindex, -1); rb_define_method(rb_cString, "replace", rb_str_replace_m, 1); rb_define_method(rb_cString, "to_i", rb_str_to_i, 0); */ stringClass.defineMethod("to_s", getMethod("m_to_s", false)); stringClass.defineMethod("to_str", getMethod("m_to_s", false)); /* rb_define_method(rb_cString, "inspect", rb_str_inspect, 0); rb_define_method(rb_cString, "dump", rb_str_dump, 0); rb_define_method(rb_cString, "upcase", rb_str_upcase, 0); rb_define_method(rb_cString, "downcase", rb_str_downcase, 0); rb_define_method(rb_cString, "capitalize", rb_str_capitalize, 0); rb_define_method(rb_cString, "swapcase", rb_str_swapcase, 0); rb_define_method(rb_cString, "upcase!", rb_str_upcase_bang, 0); rb_define_method(rb_cString, "downcase!", rb_str_downcase_bang, 0); rb_define_method(rb_cString, "capitalize!", rb_str_capitalize_bang, 0); rb_define_method(rb_cString, "swapcase!", rb_str_swapcase_bang, 0); rb_define_method(rb_cString, "hex", rb_str_hex, 0); rb_define_method(rb_cString, "oct", rb_str_oct, 0); rb_define_method(rb_cString, "split", rb_str_split_m, -1);*/ stringClass.defineMethod("reverse", getMethod("m_reverse", false)); /*rb_define_method(rb_cString, "reverse!", rb_str_reverse_bang, 0); rb_define_method(rb_cString, "concat", rb_str_concat, 1); rb_define_method(rb_cString, "<<", rb_str_concat, 1); rb_define_method(rb_cString, "crypt", rb_str_crypt, 1); rb_define_method(rb_cString, "intern", rb_str_intern, 0); rb_define_method(rb_cString, "include?", rb_str_include, 1); rb_define_method(rb_cString, "scan", rb_str_scan, 1); rb_define_method(rb_cString, "ljust", rb_str_ljust, 1); rb_define_method(rb_cString, "rjust", rb_str_rjust, 1); rb_define_method(rb_cString, "center", rb_str_center, 1); rb_define_method(rb_cString, "sub", rb_str_sub, -1); rb_define_method(rb_cString, "gsub", rb_str_gsub, -1); rb_define_method(rb_cString, "chop", rb_str_chop, 0); rb_define_method(rb_cString, "chomp", rb_str_chomp, -1); rb_define_method(rb_cString, "strip", rb_str_strip, 0); rb_define_method(rb_cString, "sub!", rb_str_sub_bang, -1); rb_define_method(rb_cString, "gsub!", rb_str_gsub_bang, -1); rb_define_method(rb_cString, "strip!", rb_str_strip_bang, 0); rb_define_method(rb_cString, "chop!", rb_str_chop_bang, 0); rb_define_method(rb_cString, "chomp!", rb_str_chomp_bang, -1); rb_define_method(rb_cString, "tr", rb_str_tr, 2); rb_define_method(rb_cString, "tr_s", rb_str_tr_s, 2); rb_define_method(rb_cString, "delete", rb_str_delete, -1); rb_define_method(rb_cString, "squeeze", rb_str_squeeze, -1); rb_define_method(rb_cString, "count", rb_str_count, -1); rb_define_method(rb_cString, "tr!", rb_str_tr_bang, 2); rb_define_method(rb_cString, "tr_s!", rb_str_tr_s_bang, 2); rb_define_method(rb_cString, "delete!", rb_str_delete_bang, -1); rb_define_method(rb_cString, "squeeze!", rb_str_squeeze_bang, -1); rb_define_method(rb_cString, "each_line", rb_str_each_line, -1); rb_define_method(rb_cString, "each", rb_str_each_line, -1); rb_define_method(rb_cString, "each_byte", rb_str_each_byte, 0); rb_define_method(rb_cString, "sum", rb_str_sum, -1); rb_define_global_function("sub", rb_f_sub, -1); rb_define_global_function("gsub", rb_f_gsub, -1); rb_define_global_function("sub!", rb_f_sub_bang, -1); rb_define_global_function("gsub!", rb_f_gsub_bang, -1); rb_define_global_function("chop", rb_f_chop, 0); rb_define_global_function("chop!", rb_f_chop_bang, 0); rb_define_global_function("chomp", rb_f_chomp, -1); rb_define_global_function("chomp!", rb_f_chomp_bang, -1); rb_define_global_function("split", rb_f_split, -1); rb_define_global_function("scan", rb_f_scan, 1);*/ stringClass.defineMethod("slice", getMethod("m_slice", true)); /*rb_define_method(rb_cString, "slice!", rb_str_slice_bang, -1); id_to_s = rb_intern("to_s"); rb_fs = Qnil; rb_define_hooked_variable("$;", &rb_fs, 0, rb_str_setter); rb_define_hooked_variable("$-F", &rb_fs, 0, rb_str_setter);*/ return stringClass; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/8e00ad1c7ae96f50ae0bd521483380788f891b7b/RbString.java/buggy/org/jruby/core/RbString.java |
rb_define_method(rb_cString, "capitalize!", rb_str_capitalize_bang, 0); rb_define_method(rb_cString, "swapcase!", rb_str_swapcase_bang, 0); | */ stringClass.defineMethod("capitalize!", getMethod("m_capitalize_bang", false)); /*rb_define_method(rb_cString, "swapcase!", rb_str_swapcase_bang, 0); | public static RubyClass createStringClass(Ruby ruby) { RubyClass stringClass = ruby.defineClass("String", ruby.getObjectClass()); stringClass.includeModule(ruby.getRubyClass("Comparable")); // stringClass.includeModule(ruby.getModules().getEnumerable()); stringClass.defineSingletonMethod("new", getSingletonMethod("m_new", true)); stringClass.defineMethod("initialize", getMethod("m_replace", RubyString.class));/* rb_define_method(rb_cString, "clone", rb_str_clone, 0); rb_define_method(rb_cString, "dup", rb_str_dup, 0);*/ stringClass.defineMethod("<=>", getMethod("op_cmp", RubyObject.class)); stringClass.defineMethod("==", getMethod("m_equal", RubyObject.class)); stringClass.defineMethod("===", getMethod("m_equal", RubyObject.class)); stringClass.defineMethod("eql?", getMethod("m_equal", RubyObject.class)); /*rb_define_method(rb_cString, "hash", rb_str_hash_m, 0); rb_define_method(rb_cString, "+", rb_str_plus, 1); rb_define_method(rb_cString, "*", rb_str_times, 1); rb_define_method(rb_cString, "%", rb_str_format, 1); */ stringClass.defineMethod("[]", getMethod("m_slice", true)); /*rb_define_method(rb_cString, "[]=", rb_str_aset_m, -1); rb_define_method(rb_cString, "length", rb_str_length, 0); rb_define_method(rb_cString, "size", rb_str_length, 0); rb_define_method(rb_cString, "empty?", rb_str_empty, 0); rb_define_method(rb_cString, "=~", rb_str_match, 1); rb_define_method(rb_cString, "~", rb_str_match2, 0); rb_define_method(rb_cString, "succ", rb_str_succ, 0); rb_define_method(rb_cString, "succ!", rb_str_succ_bang, 0); rb_define_method(rb_cString, "next", rb_str_succ, 0); rb_define_method(rb_cString, "next!", rb_str_succ_bang, 0); rb_define_method(rb_cString, "upto", rb_str_upto_m, 1); rb_define_method(rb_cString, "index", rb_str_index_m, -1); rb_define_method(rb_cString, "rindex", rb_str_rindex, -1); rb_define_method(rb_cString, "replace", rb_str_replace_m, 1); rb_define_method(rb_cString, "to_i", rb_str_to_i, 0); */ stringClass.defineMethod("to_s", getMethod("m_to_s", false)); stringClass.defineMethod("to_str", getMethod("m_to_s", false)); /* rb_define_method(rb_cString, "inspect", rb_str_inspect, 0); rb_define_method(rb_cString, "dump", rb_str_dump, 0); rb_define_method(rb_cString, "upcase", rb_str_upcase, 0); rb_define_method(rb_cString, "downcase", rb_str_downcase, 0); rb_define_method(rb_cString, "capitalize", rb_str_capitalize, 0); rb_define_method(rb_cString, "swapcase", rb_str_swapcase, 0); rb_define_method(rb_cString, "upcase!", rb_str_upcase_bang, 0); rb_define_method(rb_cString, "downcase!", rb_str_downcase_bang, 0); rb_define_method(rb_cString, "capitalize!", rb_str_capitalize_bang, 0); rb_define_method(rb_cString, "swapcase!", rb_str_swapcase_bang, 0); rb_define_method(rb_cString, "hex", rb_str_hex, 0); rb_define_method(rb_cString, "oct", rb_str_oct, 0); rb_define_method(rb_cString, "split", rb_str_split_m, -1);*/ stringClass.defineMethod("reverse", getMethod("m_reverse", false)); /*rb_define_method(rb_cString, "reverse!", rb_str_reverse_bang, 0); rb_define_method(rb_cString, "concat", rb_str_concat, 1); rb_define_method(rb_cString, "<<", rb_str_concat, 1); rb_define_method(rb_cString, "crypt", rb_str_crypt, 1); rb_define_method(rb_cString, "intern", rb_str_intern, 0); rb_define_method(rb_cString, "include?", rb_str_include, 1); rb_define_method(rb_cString, "scan", rb_str_scan, 1); rb_define_method(rb_cString, "ljust", rb_str_ljust, 1); rb_define_method(rb_cString, "rjust", rb_str_rjust, 1); rb_define_method(rb_cString, "center", rb_str_center, 1); rb_define_method(rb_cString, "sub", rb_str_sub, -1); rb_define_method(rb_cString, "gsub", rb_str_gsub, -1); rb_define_method(rb_cString, "chop", rb_str_chop, 0); rb_define_method(rb_cString, "chomp", rb_str_chomp, -1); rb_define_method(rb_cString, "strip", rb_str_strip, 0); rb_define_method(rb_cString, "sub!", rb_str_sub_bang, -1); rb_define_method(rb_cString, "gsub!", rb_str_gsub_bang, -1); rb_define_method(rb_cString, "strip!", rb_str_strip_bang, 0); rb_define_method(rb_cString, "chop!", rb_str_chop_bang, 0); rb_define_method(rb_cString, "chomp!", rb_str_chomp_bang, -1); rb_define_method(rb_cString, "tr", rb_str_tr, 2); rb_define_method(rb_cString, "tr_s", rb_str_tr_s, 2); rb_define_method(rb_cString, "delete", rb_str_delete, -1); rb_define_method(rb_cString, "squeeze", rb_str_squeeze, -1); rb_define_method(rb_cString, "count", rb_str_count, -1); rb_define_method(rb_cString, "tr!", rb_str_tr_bang, 2); rb_define_method(rb_cString, "tr_s!", rb_str_tr_s_bang, 2); rb_define_method(rb_cString, "delete!", rb_str_delete_bang, -1); rb_define_method(rb_cString, "squeeze!", rb_str_squeeze_bang, -1); rb_define_method(rb_cString, "each_line", rb_str_each_line, -1); rb_define_method(rb_cString, "each", rb_str_each_line, -1); rb_define_method(rb_cString, "each_byte", rb_str_each_byte, 0); rb_define_method(rb_cString, "sum", rb_str_sum, -1); rb_define_global_function("sub", rb_f_sub, -1); rb_define_global_function("gsub", rb_f_gsub, -1); rb_define_global_function("sub!", rb_f_sub_bang, -1); rb_define_global_function("gsub!", rb_f_gsub_bang, -1); rb_define_global_function("chop", rb_f_chop, 0); rb_define_global_function("chop!", rb_f_chop_bang, 0); rb_define_global_function("chomp", rb_f_chomp, -1); rb_define_global_function("chomp!", rb_f_chomp_bang, -1); rb_define_global_function("split", rb_f_split, -1); rb_define_global_function("scan", rb_f_scan, 1);*/ stringClass.defineMethod("slice", getMethod("m_slice", true)); /*rb_define_method(rb_cString, "slice!", rb_str_slice_bang, -1); id_to_s = rb_intern("to_s"); rb_fs = Qnil; rb_define_hooked_variable("$;", &rb_fs, 0, rb_str_setter); rb_define_hooked_variable("$-F", &rb_fs, 0, rb_str_setter);*/ return stringClass; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/8e00ad1c7ae96f50ae0bd521483380788f891b7b/RbString.java/buggy/org/jruby/core/RbString.java |
public MetaClass(IRuby runtime, RubyClass superClass, RubyModule parentModule) { super(runtime, runtime.getClass("Class"), superClass, parentModule, null); | public MetaClass(IRuby runtime, RubyClass superClass, SinglyLinkedList parentCRef) { super(runtime, runtime.getClass("Class"), superClass, parentCRef, null); | public MetaClass(IRuby runtime, RubyClass superClass, RubyModule parentModule) { super(runtime, runtime.getClass("Class"), superClass, parentModule, null); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a1b8fc1d456e3d5c6e01579b88773383068aa85c/MetaClass.java/buggy/src/org/jruby/MetaClass.java |
if ((list[i].getAbsolutePath()).equals(fileName)) exist = true; | if ((list[i].getAbsolutePath()).equals(name)) exist = true; | private void setSelection(String format, String fileName, String message, File[] list) { boolean exist = false; for (int i = 0; i < list.length; i++) if ((list[i].getAbsolutePath()).equals(fileName)) exist = true; if (!exist) { display = false; manager.saveROIResult(format, fileName, message); cancelSelection(); } else manager.showSelectionDialog(format, fileName, message); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0f84715d97fb9bad35cd75d5c742a1473fe1f109/FileFormatChooser.java/buggy/SRC/org/openmicroscopy/shoola/agents/roi/util/FileFormatChooser.java |
Set types = new HashSet(); | Set<SemanticType> types = new HashSet<SemanticType>(); DSLHandler handler = new DSLHandler(); | execute() throws BuildException { if(_fileSets.isEmpty()) { throw new BuildException("No fileset specified"); } Set types = new HashSet(); java.util.Iterator p = _fileSets.iterator(); while(p.hasNext()) { FileSet fileset = (FileSet)p.next(); DirectoryScanner scanner = fileset.getDirectoryScanner(getProject()); scanner.scan(); String[] files = scanner.getIncludedFiles(); for(int i = 0; i < files.length; i++) { String filename = fileset.getDir(getProject())+File.separator+files[i]; File file = new File(filename); if (!file.exists()){ log("File "+file+" not found."); } else { SaxReader sr = new SaxReader(file); types.addAll(sr.parse()); } } } for (Iterator it = types.iterator(); it.hasNext();) { SemanticType st = (SemanticType) it.next(); VelocityHelper vh = new VelocityHelper(); vh.put("type",st); try { String file = _outputDir+File.separator+st.getId().replaceAll("[.]","\\"+File.separator)+".hbm.xml"; writeToFile(vh,file,"ome/dsl/mapping.vm"); } catch (Exception e){ throw new BuildException("Error while writing type:"+st,e); } } VelocityHelper vh = new VelocityHelper(); vh.put("types",types); try { String file = _outputDir+File.separator+File.separator+"data.sql"; writeToFile(vh, file, "ome/dsl/data.vm"); } catch (Exception e){ throw new BuildException("Error while writing data:",e); } } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/6d9e84b0d2f71da76eba45bc713472ad607c544a/DSLTask.java/buggy/components/dsl/src/ome/dsl/DSLTask.java |
SaxReader sr = new SaxReader(file); types.addAll(sr.parse()); | SaxReader sr = new SaxReader(file,handler); sr.parse(); | execute() throws BuildException { if(_fileSets.isEmpty()) { throw new BuildException("No fileset specified"); } Set types = new HashSet(); java.util.Iterator p = _fileSets.iterator(); while(p.hasNext()) { FileSet fileset = (FileSet)p.next(); DirectoryScanner scanner = fileset.getDirectoryScanner(getProject()); scanner.scan(); String[] files = scanner.getIncludedFiles(); for(int i = 0; i < files.length; i++) { String filename = fileset.getDir(getProject())+File.separator+files[i]; File file = new File(filename); if (!file.exists()){ log("File "+file+" not found."); } else { SaxReader sr = new SaxReader(file); types.addAll(sr.parse()); } } } for (Iterator it = types.iterator(); it.hasNext();) { SemanticType st = (SemanticType) it.next(); VelocityHelper vh = new VelocityHelper(); vh.put("type",st); try { String file = _outputDir+File.separator+st.getId().replaceAll("[.]","\\"+File.separator)+".hbm.xml"; writeToFile(vh,file,"ome/dsl/mapping.vm"); } catch (Exception e){ throw new BuildException("Error while writing type:"+st,e); } } VelocityHelper vh = new VelocityHelper(); vh.put("types",types); try { String file = _outputDir+File.separator+File.separator+"data.sql"; writeToFile(vh, file, "ome/dsl/data.vm"); } catch (Exception e){ throw new BuildException("Error while writing data:",e); } } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/6d9e84b0d2f71da76eba45bc713472ad607c544a/DSLTask.java/buggy/components/dsl/src/ome/dsl/DSLTask.java |
types.addAll(handler.process()); | execute() throws BuildException { if(_fileSets.isEmpty()) { throw new BuildException("No fileset specified"); } Set types = new HashSet(); java.util.Iterator p = _fileSets.iterator(); while(p.hasNext()) { FileSet fileset = (FileSet)p.next(); DirectoryScanner scanner = fileset.getDirectoryScanner(getProject()); scanner.scan(); String[] files = scanner.getIncludedFiles(); for(int i = 0; i < files.length; i++) { String filename = fileset.getDir(getProject())+File.separator+files[i]; File file = new File(filename); if (!file.exists()){ log("File "+file+" not found."); } else { SaxReader sr = new SaxReader(file); types.addAll(sr.parse()); } } } for (Iterator it = types.iterator(); it.hasNext();) { SemanticType st = (SemanticType) it.next(); VelocityHelper vh = new VelocityHelper(); vh.put("type",st); try { String file = _outputDir+File.separator+st.getId().replaceAll("[.]","\\"+File.separator)+".hbm.xml"; writeToFile(vh,file,"ome/dsl/mapping.vm"); } catch (Exception e){ throw new BuildException("Error while writing type:"+st,e); } } VelocityHelper vh = new VelocityHelper(); vh.put("types",types); try { String file = _outputDir+File.separator+File.separator+"data.sql"; writeToFile(vh, file, "ome/dsl/data.vm"); } catch (Exception e){ throw new BuildException("Error while writing data:",e); } } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/6d9e84b0d2f71da76eba45bc713472ad607c544a/DSLTask.java/buggy/components/dsl/src/ome/dsl/DSLTask.java |
|
public static RubyClass createThreadClass(Ruby runtime) { RubyClass threadClass = new ThreadDefinition(runtime).getType(); | public static RubyClass createThreadClass(Ruby ruby) { RubyClass threadClass = ruby.defineClass("Thread", ruby.getClasses().getObjectClass()); CallbackFactory callbackFactory = ruby.callbackFactory(); | public static RubyClass createThreadClass(Ruby runtime) { RubyClass threadClass = new ThreadDefinition(runtime).getType(); ThreadClass currentThread = new ThreadClass(runtime, threadClass); currentThread.jvmThread = Thread.currentThread(); runtime.getThreadService().setMainThread(currentThread); return threadClass; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/1c602493a83e2050f401fa6925ec7e9269b45e4e/ThreadClass.java/clean/src/org/jruby/ThreadClass.java |
ThreadClass currentThread = new ThreadClass(runtime, threadClass); | threadClass.defineMethod("[]", callbackFactory.getMethod(ThreadClass.class, "aref", IRubyObject.class)); threadClass.defineMethod("[]=", callbackFactory.getMethod(ThreadClass.class, "aset", IRubyObject.class, IRubyObject.class)); threadClass.defineMethod("abort_on_exception", callbackFactory.getMethod(ThreadClass.class, "abort_on_exception", IRubyObject.class)); threadClass.defineMethod("abort_on_exception=", callbackFactory.getMethod(ThreadClass.class, "abort_on_exception_set", IRubyObject.class, IRubyObject.class)); threadClass.defineMethod("alive?", callbackFactory.getMethod(ThreadClass.class, "is_alive")); threadClass.defineMethod("join", callbackFactory.getMethod(ThreadClass.class, "join")); threadClass.defineMethod("key?", callbackFactory.getMethod(ThreadClass.class, "has_key", IRubyObject.class)); threadClass.defineMethod("priority", callbackFactory.getMethod(ThreadClass.class, "priority")); threadClass.defineMethod("priority=", callbackFactory.getMethod(ThreadClass.class, "priority_set", IRubyObject.class)); threadClass.defineMethod("raise", callbackFactory.getMethod(ThreadClass.class, "raise", IRubyObject.class)); threadClass.defineMethod("status", callbackFactory.getMethod(ThreadClass.class, "status")); threadClass.defineSingletonMethod("current", callbackFactory.getSingletonMethod(ThreadClass.class, "current")); threadClass.defineSingletonMethod("fork", callbackFactory.getOptSingletonMethod(ThreadClass.class, "newInstance")); threadClass.defineSingletonMethod("new", callbackFactory.getOptSingletonMethod(ThreadClass.class, "newInstance")); threadClass.defineSingletonMethod("list", callbackFactory.getSingletonMethod(ThreadClass.class, "list")); threadClass.defineSingletonMethod("pass", callbackFactory.getSingletonMethod(ThreadClass.class, "pass")); threadClass.defineSingletonMethod("start", callbackFactory.getSingletonMethod(ThreadClass.class, "start")); ThreadClass currentThread = new ThreadClass(ruby, threadClass); | public static RubyClass createThreadClass(Ruby runtime) { RubyClass threadClass = new ThreadDefinition(runtime).getType(); ThreadClass currentThread = new ThreadClass(runtime, threadClass); currentThread.jvmThread = Thread.currentThread(); runtime.getThreadService().setMainThread(currentThread); return threadClass; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/1c602493a83e2050f401fa6925ec7e9269b45e4e/ThreadClass.java/clean/src/org/jruby/ThreadClass.java |
runtime.getThreadService().setMainThread(currentThread); | ruby.getThreadService().setMainThread(currentThread); | public static RubyClass createThreadClass(Ruby runtime) { RubyClass threadClass = new ThreadDefinition(runtime).getType(); ThreadClass currentThread = new ThreadClass(runtime, threadClass); currentThread.jvmThread = Thread.currentThread(); runtime.getThreadService().setMainThread(currentThread); return threadClass; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/1c602493a83e2050f401fa6925ec7e9269b45e4e/ThreadClass.java/clean/src/org/jruby/ThreadClass.java |
Set<String> s = disabledSubsystemsHolder.get( ); | Set<String> s = data.get().disabledSubsystems; | public static boolean addDisabled(String id) { Set<String> s = disabledSubsystemsHolder.get( ); if ( s == null ) { s = new HashSet<String>(); disabledSubsystemsHolder.set( s ); return s.add(id); } return false; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e6b7ac4062ce844e31078de77a00a7ab77e5e5d5/CurrentDetails.java/clean/components/server/src/ome/security/CurrentDetails.java |
disabledSubsystemsHolder.set( s ); | data.get().disabledSubsystems = s; | public static boolean addDisabled(String id) { Set<String> s = disabledSubsystemsHolder.get( ); if ( s == null ) { s = new HashSet<String>(); disabledSubsystemsHolder.set( s ); return s.add(id); } return false; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e6b7ac4062ce844e31078de77a00a7ab77e5e5d5/CurrentDetails.java/clean/components/server/src/ome/security/CurrentDetails.java |
getCreationEvent().clearLogs(); | data.get().logs = null; | public static void clearLogs() { getCreationEvent().clearLogs(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e6b7ac4062ce844e31078de77a00a7ab77e5e5d5/CurrentDetails.java/clean/components/server/src/ome/security/CurrentDetails.java |
Details details = detailsHolder.get(); | Details details = data.get().details; | protected static Details getDetails() { Details details = detailsHolder.get(); if (details == null) { details = new Details(); setDetails(details); } return details; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e6b7ac4062ce844e31078de77a00a7ab77e5e5d5/CurrentDetails.java/clean/components/server/src/ome/security/CurrentDetails.java |
Permissions umask = umaskHolder.get(); | Permissions umask = data.get().umask; | public static Permissions getUmask() { Permissions umask = umaskHolder.get(); if (umask == null) { umask = new Permissions(); setUmask(umask); } return umask; /* FIXME * should be configurable * see https://trac.openmicroscopy.org.uk/omero/ticket/179 * getOwner().getProfile().getUmask * object.getDetails().getUmask() * CurrentDetails.getDetails().getUmask(); */ } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e6b7ac4062ce844e31078de77a00a7ab77e5e5d5/CurrentDetails.java/clean/components/server/src/ome/security/CurrentDetails.java |
Set<String> s = disabledSubsystemsHolder.get( ); | Set<String> s = data.get().disabledSubsystems; | public static boolean removeDisabled(String id) { Set<String> s = disabledSubsystemsHolder.get( ); if ( s != null && id != null ) { return s.remove(id); } return false; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e6b7ac4062ce844e31078de77a00a7ab77e5e5d5/CurrentDetails.java/clean/components/server/src/ome/security/CurrentDetails.java |
detailsHolder.set(details); | data.get().details = details; | protected static void setDetails(Details details) { detailsHolder.set(details); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e6b7ac4062ce844e31078de77a00a7ab77e5e5d5/CurrentDetails.java/clean/components/server/src/ome/security/CurrentDetails.java |
umaskHolder.set(umask); | data.get().umask = umask; | public static void setUmask(Permissions umask) { umaskHolder.set(umask); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e6b7ac4062ce844e31078de77a00a7ab77e5e5d5/CurrentDetails.java/clean/components/server/src/ome/security/CurrentDetails.java |
public static RubyClass createRegexpClass(Ruby runtime) { RubyClass regexpClass = new RegexpDefinition(runtime).getType(); | public static RubyClass createRegexpClass(Ruby ruby) { RubyClass regexpClass = ruby.defineClass("Regexp", ruby.getClasses().getObjectClass()); CallbackFactory callbackFactory = ruby.callbackFactory(); regexpClass.defineConstant("IGNORECASE", RubyFixnum.newFixnum(ruby, RE_OPTION_IGNORECASE)); regexpClass.defineConstant("EXTENDED", RubyFixnum.newFixnum(ruby, RE_OPTION_EXTENDED)); regexpClass.defineConstant("MULTILINE", RubyFixnum.newFixnum(ruby, RE_OPTION_MULTILINE)); | public static RubyClass createRegexpClass(Ruby runtime) { RubyClass regexpClass = new RegexpDefinition(runtime).getType(); regexpClass.defineConstant("IGNORECASE", RubyFixnum.newFixnum(runtime, RE_OPTION_IGNORECASE)); regexpClass.defineConstant("EXTENDED", RubyFixnum.newFixnum(runtime, RE_OPTION_EXTENDED)); regexpClass.defineConstant("MULTILINE", RubyFixnum.newFixnum(runtime, RE_OPTION_MULTILINE)); return regexpClass; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/1c602493a83e2050f401fa6925ec7e9269b45e4e/RubyRegexp.java/clean/src/org/jruby/RubyRegexp.java |
regexpClass.defineConstant("IGNORECASE", RubyFixnum.newFixnum(runtime, RE_OPTION_IGNORECASE)); regexpClass.defineConstant("EXTENDED", RubyFixnum.newFixnum(runtime, RE_OPTION_EXTENDED)); regexpClass.defineConstant("MULTILINE", RubyFixnum.newFixnum(runtime, RE_OPTION_MULTILINE)); | regexpClass.defineMethod("initialize", callbackFactory.getOptMethod(RubyRegexp.class, "initialize")); regexpClass.defineMethod("clone", callbackFactory.getMethod(RubyRegexp.class, "rbClone")); regexpClass.defineMethod("==", callbackFactory.getMethod(RubyRegexp.class, "equal", IRubyObject.class)); regexpClass.defineMethod("===", callbackFactory.getMethod(RubyRegexp.class, "match", IRubyObject.class)); regexpClass.defineMethod("=~", callbackFactory.getMethod(RubyRegexp.class, "match", IRubyObject.class)); regexpClass.defineMethod("~", callbackFactory.getMethod(RubyRegexp.class, "match2")); regexpClass.defineMethod("match", callbackFactory.getMethod(RubyRegexp.class, "match_m", IRubyObject.class)); regexpClass.defineMethod("inspect", callbackFactory.getMethod(RubyRegexp.class, "inspect")); regexpClass.defineMethod("source", callbackFactory.getMethod(RubyRegexp.class, "source")); regexpClass.defineMethod("casefold?", callbackFactory.getMethod(RubyRegexp.class, "casefold")); regexpClass.defineSingletonMethod("new", callbackFactory.getOptSingletonMethod(RubyRegexp.class, "newInstance")); regexpClass.defineSingletonMethod("compile", callbackFactory.getOptSingletonMethod(RubyRegexp.class, "newInstance")); regexpClass.defineSingletonMethod("quote", callbackFactory.getSingletonMethod(RubyRegexp.class, "quote", RubyString.class)); regexpClass.defineSingletonMethod("escape", callbackFactory.getSingletonMethod(RubyRegexp.class, "quote", RubyString.class)); regexpClass.defineSingletonMethod("last_match", callbackFactory.getSingletonMethod(RubyRegexp.class, "last_match_s")); | public static RubyClass createRegexpClass(Ruby runtime) { RubyClass regexpClass = new RegexpDefinition(runtime).getType(); regexpClass.defineConstant("IGNORECASE", RubyFixnum.newFixnum(runtime, RE_OPTION_IGNORECASE)); regexpClass.defineConstant("EXTENDED", RubyFixnum.newFixnum(runtime, RE_OPTION_EXTENDED)); regexpClass.defineConstant("MULTILINE", RubyFixnum.newFixnum(runtime, RE_OPTION_MULTILINE)); return regexpClass; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/1c602493a83e2050f401fa6925ec7e9269b45e4e/RubyRegexp.java/clean/src/org/jruby/RubyRegexp.java |
ChatRoom chatRoom = (ChatRoom)getComponentInTab(tab); if (chatRoom != null) { for (ChatRoom cRoom : getChatRooms()) { if (chatRoom != cRoom) { closeTab(cRoom); } } } | ChatRoom chatRoom = (ChatRoom)getComponentInTab(tab); if (chatRoom != null) { closeTab(chatRoom); | public void actionPerformed(ActionEvent e) { ChatRoom chatRoom = (ChatRoom)getComponentInTab(tab); if (chatRoom != null) { for (ChatRoom cRoom : getChatRooms()) { if (chatRoom != cRoom) { closeTab(cRoom); } } } } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/679c55c119e5807b621b021ce6ce8ef36ef890f3/ChatContainer.java/buggy/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
} | public void actionPerformed(ActionEvent e) { ChatRoom chatRoom = (ChatRoom)getComponentInTab(tab); if (chatRoom != null) { for (ChatRoom cRoom : getChatRooms()) { if (chatRoom != cRoom) { closeTab(cRoom); } } } } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/679c55c119e5807b621b021ce6ce8ef36ef890f3/ChatContainer.java/buggy/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
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for (ChatRoom rooms : getStaleChatRooms()) { closeTab(rooms); | ChatRoom chatRoom = (ChatRoom)getComponentInTab(tab); if (chatRoom != null) { for (ChatRoom cRoom : getChatRooms()) { if (chatRoom != cRoom) { closeTab(cRoom); } } | public void actionPerformed(ActionEvent e) { for (ChatRoom rooms : getStaleChatRooms()) { closeTab(rooms); } } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/679c55c119e5807b621b021ce6ce8ef36ef890f3/ChatContainer.java/buggy/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
ChatRoom activeChatRoom = null; try { activeChatRoom = getActiveChatRoom(); } catch (ChatRoomNotFoundException e1) { Log.error(e1); } if (chatFrame.isVisible() && (chatFrame.getState() == Frame.ICONIFIED || chatFrame.getInactiveTime() > 20000)) { int tabLocation = indexOfComponent(chatRoom); setSelectedIndex(tabLocation); startFlashing(chatRoom); return; } if (!chatFrame.isVisible() && SparkManager.getMainWindow().isFocused()) { chatFrame.setState(Frame.NORMAL); chatFrame.setVisible(true); } else if (chatFrame.isVisible() && !chatFrame.isInFocus()) { startFlashing(chatRoom); } else if (chatFrame.isVisible() && chatFrame.getState() == Frame.ICONIFIED) { int tabLocation = indexOfComponent(chatRoom); setSelectedIndex(tabLocation); startFlashing(chatRoom); } else if (chatFrame.isVisible() && !SparkManager.getMainWindow().isVisible() && !chatFrame.isInFocus()) { startFlashing(chatRoom); } else if (!chatFrame.isVisible()) { if (Spark.isWindows()) { chatFrame.setFocusableWindowState(false); chatFrame.setState(Frame.ICONIFIED); | SwingUtilities.invokeLater(new Runnable() { public void run() { handleMessageNotification(chatRoom); | public void fireNotifyOnMessage(final ChatRoom chatRoom) { ChatRoom activeChatRoom = null; try { activeChatRoom = getActiveChatRoom(); } catch (ChatRoomNotFoundException e1) { Log.error(e1); } if (chatFrame.isVisible() && (chatFrame.getState() == Frame.ICONIFIED || chatFrame.getInactiveTime() > 20000)) { int tabLocation = indexOfComponent(chatRoom); setSelectedIndex(tabLocation); startFlashing(chatRoom); return; } if (!chatFrame.isVisible() && SparkManager.getMainWindow().isFocused()) { chatFrame.setState(Frame.NORMAL); chatFrame.setVisible(true); } else if (chatFrame.isVisible() && !chatFrame.isInFocus()) { startFlashing(chatRoom); } else if (chatFrame.isVisible() && chatFrame.getState() == Frame.ICONIFIED) { // Set to new tab. int tabLocation = indexOfComponent(chatRoom); setSelectedIndex(tabLocation); // If the ContactList is in the tray, we need better notification by flashing // the chatframe. startFlashing(chatRoom); } // Handle when chat frame is visible but the Contact List is not. else if (chatFrame.isVisible() && !SparkManager.getMainWindow().isVisible() && !chatFrame.isInFocus()) { startFlashing(chatRoom); } else if (!chatFrame.isVisible()) { if (Spark.isWindows()) { chatFrame.setFocusableWindowState(false); chatFrame.setState(Frame.ICONIFIED); } chatFrame.setVisible(true); // Set to new tab. int tabLocation = indexOfComponent(chatRoom); setSelectedIndex(tabLocation); // If the ContactList is in the tray, we need better notification by flashing // the chatframe. if (!SparkManager.getMainWindow().isVisible()) { startFlashing(chatRoom); } else if (chatFrame.getState() == Frame.ICONIFIED) { startFlashing(chatRoom); } } else if (chatRoom != activeChatRoom) { startFlashing(chatRoom); } } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/679c55c119e5807b621b021ce6ce8ef36ef890f3/ChatContainer.java/buggy/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
chatFrame.setVisible(true); int tabLocation = indexOfComponent(chatRoom); setSelectedIndex(tabLocation); if (!SparkManager.getMainWindow().isVisible()) { startFlashing(chatRoom); } else if (chatFrame.getState() == Frame.ICONIFIED) { startFlashing(chatRoom); } } else if (chatRoom != activeChatRoom) { startFlashing(chatRoom); } | }); | public void fireNotifyOnMessage(final ChatRoom chatRoom) { ChatRoom activeChatRoom = null; try { activeChatRoom = getActiveChatRoom(); } catch (ChatRoomNotFoundException e1) { Log.error(e1); } if (chatFrame.isVisible() && (chatFrame.getState() == Frame.ICONIFIED || chatFrame.getInactiveTime() > 20000)) { int tabLocation = indexOfComponent(chatRoom); setSelectedIndex(tabLocation); startFlashing(chatRoom); return; } if (!chatFrame.isVisible() && SparkManager.getMainWindow().isFocused()) { chatFrame.setState(Frame.NORMAL); chatFrame.setVisible(true); } else if (chatFrame.isVisible() && !chatFrame.isInFocus()) { startFlashing(chatRoom); } else if (chatFrame.isVisible() && chatFrame.getState() == Frame.ICONIFIED) { // Set to new tab. int tabLocation = indexOfComponent(chatRoom); setSelectedIndex(tabLocation); // If the ContactList is in the tray, we need better notification by flashing // the chatframe. startFlashing(chatRoom); } // Handle when chat frame is visible but the Contact List is not. else if (chatFrame.isVisible() && !SparkManager.getMainWindow().isVisible() && !chatFrame.isInFocus()) { startFlashing(chatRoom); } else if (!chatFrame.isVisible()) { if (Spark.isWindows()) { chatFrame.setFocusableWindowState(false); chatFrame.setState(Frame.ICONIFIED); } chatFrame.setVisible(true); // Set to new tab. int tabLocation = indexOfComponent(chatRoom); setSelectedIndex(tabLocation); // If the ContactList is in the tray, we need better notification by flashing // the chatframe. if (!SparkManager.getMainWindow().isVisible()) { startFlashing(chatRoom); } else if (chatFrame.getState() == Frame.ICONIFIED) { startFlashing(chatRoom); } } else if (chatRoom != activeChatRoom) { startFlashing(chatRoom); } } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/679c55c119e5807b621b021ce6ce8ef36ef890f3/ChatContainer.java/buggy/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
final Iterator iter = new HashSet(chatRoomListeners).iterator(); while (iter.hasNext()) { ((ChatRoomListener)iter.next()).userHasJoined(room, userid); } | handleMessageNotification(chatRoom); | public void run() { final Iterator iter = new HashSet(chatRoomListeners).iterator(); while (iter.hasNext()) { ((ChatRoomListener)iter.next()).userHasJoined(room, userid); } } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/679c55c119e5807b621b021ce6ce8ef36ef890f3/ChatContainer.java/buggy/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
((ChatRoomListener)iter.next()).userHasLeft(room, userid); | ((ChatRoomListener)iter.next()).userHasJoined(room, userid); | public void run() { final Iterator iter = new HashSet(chatRoomListeners).iterator(); while (iter.hasNext()) { ((ChatRoomListener)iter.next()).userHasLeft(room, userid); } } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/679c55c119e5807b621b021ce6ce8ef36ef890f3/ChatContainer.java/buggy/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
final int index = indexOfComponent(room); if (index != -1) { room.increaseUnreadMessageCount(); int unreadMessageCount = room.getUnreadMessageCount(); String appendedMessage = ""; if (unreadMessageCount > 1) { appendedMessage = " (" + unreadMessageCount + ")"; } SparkTab tab = getTabAt(index); tab.getTitleLabel().setText(room.getTabTitle() + appendedMessage); if (room instanceof ChatRoomImpl) { checkNotificationPreferences(room); } makeTabRed(room); } | public void run() { try { boolean invokeFlash = SettingsManager.getLocalPreferences().isChatRoomNotificationsOn() || !(room instanceof GroupChatRoom); if (!chatFrame.isFocused() && invokeFlash) { SparkManager.getAlertManager().flashWindow(chatFrame); } } catch (Exception ex) { Log.error("Issue in ChatRooms with tab location.", ex); } } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/679c55c119e5807b621b021ce6ce8ef36ef890f3/ChatContainer.java/buggy/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
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try { final int index = indexOfComponent(room); if (index != -1) { room.increaseUnreadMessageCount(); int unreadMessageCount = room.getUnreadMessageCount(); String appendedMessage = ""; if (unreadMessageCount > 1) { appendedMessage = " (" + unreadMessageCount + ")"; } SparkTab tab = getTabAt(index); tab.getTitleLabel().setText(room.getTabTitle() + appendedMessage); if (room instanceof ChatRoomImpl) { checkNotificationPreferences(room); } makeTabRed(room); } boolean invokeFlash = SettingsManager.getLocalPreferences().isChatRoomNotificationsOn() || !(room instanceof GroupChatRoom); if (!chatFrame.isFocused() && invokeFlash) { SparkManager.getAlertManager().flashWindow(chatFrame); } } catch (Exception ex) { Log.error("Issue in ChatRooms with tab location.", ex); | final Iterator iter = new HashSet(chatRoomListeners).iterator(); while (iter.hasNext()) { ((ChatRoomListener)iter.next()).userHasLeft(room, userid); | public void run() { try { final int index = indexOfComponent(room); if (index != -1) { room.increaseUnreadMessageCount(); int unreadMessageCount = room.getUnreadMessageCount(); String appendedMessage = ""; if (unreadMessageCount > 1) { appendedMessage = " (" + unreadMessageCount + ")"; } SparkTab tab = getTabAt(index); tab.getTitleLabel().setText(room.getTabTitle() + appendedMessage); // Check notifications. if (room instanceof ChatRoomImpl) { checkNotificationPreferences(room); } makeTabRed(room); } boolean invokeFlash = SettingsManager.getLocalPreferences().isChatRoomNotificationsOn() || !(room instanceof GroupChatRoom); if (!chatFrame.isFocused() && invokeFlash) { SparkManager.getAlertManager().flashWindow(chatFrame); } } catch (Exception ex) { Log.error("Issue in ChatRooms with tab location.", ex); } } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/679c55c119e5807b621b021ce6ce8ef36ef890f3/ChatContainer.java/buggy/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
int index = indexOfComponent(room); if (index != -1) { SparkTab tab = getTabAt(index); useTabDefault(room); tab.getTitleLabel().setText(room.getTabTitle()); room.clearUnreadMessageCount(); | boolean invokeFlash = SettingsManager.getLocalPreferences().isChatRoomNotificationsOn() || !(room instanceof GroupChatRoom); if (!chatFrame.isFocused() && invokeFlash) { SparkManager.getAlertManager().flashWindow(chatFrame); | public void run() { try { int index = indexOfComponent(room); if (index != -1) { SparkTab tab = getTabAt(index); useTabDefault(room); tab.getTitleLabel().setText(room.getTabTitle()); room.clearUnreadMessageCount(); } } catch (Exception ex) { Log.error("Could not stop flashing for " + room + " because " + ex.getMessage(), ex); } SparkManager.getAlertManager().stopFlashing(chatFrame); } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/679c55c119e5807b621b021ce6ce8ef36ef890f3/ChatContainer.java/buggy/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
Log.error("Could not stop flashing for " + room + " because " + ex.getMessage(), ex); | Log.error("Issue in ChatRooms with tab location.", ex); | public void run() { try { int index = indexOfComponent(room); if (index != -1) { SparkTab tab = getTabAt(index); useTabDefault(room); tab.getTitleLabel().setText(room.getTabTitle()); room.clearUnreadMessageCount(); } } catch (Exception ex) { Log.error("Could not stop flashing for " + room + " because " + ex.getMessage(), ex); } SparkManager.getAlertManager().stopFlashing(chatFrame); } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/679c55c119e5807b621b021ce6ce8ef36ef890f3/ChatContainer.java/buggy/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
SparkManager.getAlertManager().stopFlashing(chatFrame); | public void run() { try { int index = indexOfComponent(room); if (index != -1) { SparkTab tab = getTabAt(index); useTabDefault(room); tab.getTitleLabel().setText(room.getTabTitle()); room.clearUnreadMessageCount(); } } catch (Exception ex) { Log.error("Could not stop flashing for " + room + " because " + ex.getMessage(), ex); } SparkManager.getAlertManager().stopFlashing(chatFrame); } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/679c55c119e5807b621b021ce6ce8ef36ef890f3/ChatContainer.java/buggy/src/java/org/jivesoftware/spark/ui/ChatContainer.java |
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+ " join fetch p.details.owner " + " where p.id = ? ", | + " join fetch p.details.owner " + " where p.id = :id ", | public void test_experimenter_shouldnt_increment_on_update() throws Exception { expName = eContext.getPrincipal().getName(); Experimenter e = getExperimenter(expName); expId = e.getId(); expVersion = e.getVersion(); p.setName(name); id = iUpdate.saveAndReturnObject(p).getId(); p = (Project) iQuery.findByQuery("from Project p " + " join fetch p.details.owner " + " where p.id = ? ", new Parameters().addId(id)); p.setName(p.getName() + " updated."); p = (Project) this.iUpdate.saveAndReturnObject(p); Experimenter e2 = getExperimenter(expName); assertTrue(expVersion.equals(e2.getVersion())); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/59b11883b95c926d6706e6d30b4cdb898088683c/EventStateChangeTest.java/buggy/components/server/test/ome/server/itests/EventStateChangeTest.java |
classes.initCoreClasses(); | public Ruby() { initOperatorTable(); originalMethods = new RubyOriginalMethods(this); globalMap = new RubyHashMap(); nilObject = new RubyNil(this); trueObject = new RubyBoolean(this, true); falseObject = new RubyBoolean(this, false); classes = new RubyClasses(this); createFixnumCache(); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/03950522a75c28f406bd4cb011cb1916a662366d/Ruby.java/buggy/org/jruby/Ruby.java |
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array = RubyArray.newArray(ruby, Arrays.asList(args).subList(i, args.length)); | ArrayList list = new ArrayList(args.length - i); for (int j = i; j < args.length; j++) { list.add(args[j]); } array = RubyArray.newArray(ruby, list); | final public RubyObject execute(final Ruby ruby, final RubyObject receiver, final String name, RubyObject[] args, final boolean noSuper) { if (args == null) { args = new RubyObject[0]; } RubyProc optionalBlockArg = null; if (argsNode.getBlockArgNode() != null && ruby.isBlockGiven()) { optionalBlockArg = RubyProc.newProc(ruby, ruby.getClasses().getProcClass()); } ruby.getScope().push(); Namespace savedNamespace = null; if (namespace != null) { savedNamespace = ruby.getNamespace(); ruby.setNamespace(namespace); ruby.getActFrame().setNamespace(namespace); } if (body.getLocalNames() != null) { ruby.getScope().setLocalValues(new ArrayList(Collections.nCopies(body.getLocalNames().size(), ruby.getNil()))); ruby.getScope().setLocalNames(body.getLocalNames()); } RubyVarmap.push(ruby); try { if (argsNode != null) { int i = argsNode.getArgsCount(); if (i > args.length) { throw new ArgumentError(ruby, "Wrong # of arguments(" + args.length + " for " + i + ")"); } if (argsNode.getRestArg() == -1 && argsNode.getOptArgs() != null) { int opt = i; IListNode optNode = argsNode.getOptArgs(); Iterator iter = optNode.iterator(); while (iter.hasNext()) { iter.next(); opt++; } if (opt < args.length) { throw new ArgumentError(ruby, "wrong # of arguments(" + args.length + " for " + opt + ")"); } ruby.getActFrame().setArgs(args); } if (ruby.getScope().getLocalValues() != null) { if (i > 0) { for (int j = 0; j < i; j++) { ruby.getScope().setValue(j + 2, args[j]); } } if (argsNode.getOptArgs() != null) { IListNode optArgs = argsNode.getOptArgs(); Iterator iter = optArgs.iterator(); for (int j = i; j < args.length && iter.hasNext(); j++) { new AssignmentVisitor(ruby, receiver).assign((INode)iter.next(), args[j], true); i++; } // assign the default values. while (iter.hasNext()) { EvaluateVisitor.createVisitor(receiver).eval((INode)iter.next()); } } if (argsNode.getRestArg() >= 0) { RubyArray array = null; if (args.length > i) { array = RubyArray.newArray(ruby, Arrays.asList(args).subList(i, args.length)); } else { array = RubyArray.newArray(ruby, 0); } ruby.getScope().setValue(argsNode.getRestArg(), array); } } } if (optionalBlockArg != null) { ruby.getScope().setValue(argsNode.getBlockArgNode().getCount(), optionalBlockArg); } if (ruby.getRuntime().getTraceFunction() != null) { //a lot of complication to try to get a line number and a file name //without a NullPointerException ISourcePosition lPos = null; if (body != null) if (body.getBodyNode() != null) if(body.getBodyNode().getPosition() != null) lPos = body.getBodyNode().getPosition(); else ; else if (body.getPosition() != null) lPos = body.getPosition(); else ; else if (argsNode != null) lPos = argsNode.getPosition(); String lFile = ruby.getSourceFile(); int lLine = ruby.getSourceLine(); if (lPos != null) { lFile = lPos.getFile(); lLine = lPos.getLine(); } ruby.getRuntime().callTraceFunction("call", lFile, lLine, receiver, name, getImplementationClass()); // XXX } return receiver.eval(body.getBodyNode()); // skip scope assignment } catch (ReturnException rExcptn) { return rExcptn.getReturnValue(); } finally { RubyVarmap.pop(ruby); ruby.getScope().pop(); if (savedNamespace != null) { ruby.setNamespace(savedNamespace); } if (ruby.getRuntime().getTraceFunction() != null) { String file = ruby.getFrameStack().getPrevious().getFile(); int line = ruby.getFrameStack().getPrevious().getLine(); if (file == null) { file = ruby.getSourceFile(); line = ruby.getSourceLine(); } ruby.getRuntime().callTraceFunction("return", file, line, receiver, name, getImplementationClass()); // XXX } } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a42a5780d9d19f5b3f27bdc079684319c5596e54/DefaultMethod.java/buggy/org/jruby/internal/runtime/methods/DefaultMethod.java |
if(w < 0 || dims.sizeW <= w) | if (w < 0 || dims.sizeW <= w) | private Integer linearize(int z, int w, int t) { if (z < 0 || dims.sizeZ <= z) throw new IllegalArgumentException( "z out of range [0, "+dims.sizeZ+"): "+z+"."); if(w < 0 || dims.sizeW <= w) throw new IllegalArgumentException( "w out of range [0, "+dims.sizeW+"): "+w+"."); if(t < 0 || dims.sizeT <= t) throw new IllegalArgumentException( "t out of range [0, "+dims.sizeT+"): "+t+"."); return new Integer(dims.sizeZ*dims.sizeW*t + dims.sizeZ*w + z); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/83adfc51b46811002b63a5e63336b8585ab9d4b4/ROIStats.java/buggy/SRC/org/openmicroscopy/shoola/env/rnd/roi/ROIStats.java |
if(t < 0 || dims.sizeT <= t) | if (t < 0 || dims.sizeT <= t) | private Integer linearize(int z, int w, int t) { if (z < 0 || dims.sizeZ <= z) throw new IllegalArgumentException( "z out of range [0, "+dims.sizeZ+"): "+z+"."); if(w < 0 || dims.sizeW <= w) throw new IllegalArgumentException( "w out of range [0, "+dims.sizeW+"): "+w+"."); if(t < 0 || dims.sizeT <= t) throw new IllegalArgumentException( "t out of range [0, "+dims.sizeT+"): "+t+"."); return new Integer(dims.sizeZ*dims.sizeW*t + dims.sizeZ*w + z); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/83adfc51b46811002b63a5e63336b8585ab9d4b4/ROIStats.java/buggy/SRC/org/openmicroscopy/shoola/env/rnd/roi/ROIStats.java |
result = ((RubyCallbackMethod)body.nd_cfnc()).execute(recv, args, getRuby()); | try { result = ((RubyCallbackMethod)body.nd_cfnc()).execute(recv, args, getRuby()); } catch (RubyArgumentException raExcptn) { System.out.print("Cannot call method \"" + id.toName() + "\". "); System.out.println(raExcptn.getMessage()); } | public RubyObject call0(RubyObject recv, RubyId id, RubyObject[] args, NODE body, boolean noSuper) { // ... RubyInterpreter interpreter = getRuby().getInterpreter(); interpreter.getRubyFrame().push(); // HACK +++ interpreter.getRubyIter().push(Iter.ITER_NOT); // HACK --- interpreter.getRubyFrame().setLastFunc(id); interpreter.getRubyFrame().setLastClass(noSuper ? null : this); interpreter.getRubyFrame().setSelf(recv); interpreter.getRubyFrame().setArgs(new ShiftableList(args)); RubyObject result = null; switch (body.nd_type()) { case NODE_CFUNC: { result = ((RubyCallbackMethod)body.nd_cfnc()).execute(recv, args, getRuby()); break; } case NODE_ZSUPER: case NODE_ATTRSET: case NODE_IVAR: { result = interpreter.eval(recv, body); break; } case NODE_SCOPE: { NODE savedCref = null; // VALUE[] localVars = null; ShiftableList argsList = new ShiftableList(args); ShiftableList localVarsList = null; getRuby().rubyScope.push(); if (body.nd_rval() != null) { savedCref = interpreter.ruby_cref; interpreter.ruby_cref = (NODE)body.nd_rval(); interpreter.getRubyFrame().setCbase(body.nd_rval()); } if (body.nd_tbl() != null) { // ? +++ List tmpList = Collections.nCopies(body.nd_tbl()[0].intValue() + 1, getRuby().getNil()); // ? --- localVarsList = new ShiftableList(new ArrayList(tmpList)); localVarsList.set(0, body); localVarsList.shift(1); getRuby().rubyScope.setLocalTbl(body.nd_tbl()); getRuby().rubyScope.setLocalVars(localVarsList.getList()); } else { localVarsList = getRuby().rubyScope.getLocalVars(); getRuby().rubyScope.setLocalVars(null); getRuby().rubyScope.setLocalTbl(null); } body = body.nd_next(); RubyVarmap.push(getRuby()); // PUSH_TAG(PROT_FUNC); try { NODE node = null; int i; if (body.nd_type() == NODE_ARGS) { node = body; body = null; } else if (body.nd_type() == NODE_BLOCK) { node = body.nd_head(); body = body.nd_next(); } if (node != null) { if (node.nd_type() != NODE_ARGS) { // rb_bug("no argument-node"); } i = node.nd_cnt(); if (i > (args != null ? args.length : 0)) { throw new RubyArgumentException("wrong # of arguments(" + args.length + " for " + i + ")"); } if (node.nd_rest() == -1) { int opt = i; NODE optnode = node.nd_opt(); while (optnode != null) { opt++; optnode = optnode.nd_next(); } if (opt < (args != null ? args.length : 0)) { throw new RubyArgumentException("wrong # of arguments(" + args.length + " for " + opt + ")"); } interpreter.getRubyFrame().setArgs(localVarsList != null ? localVarsList.getList(2) : null); } if (localVarsList != null) { if (i > 0) { localVarsList.shift(2); for (int j = 0; j < i; j++ ) { localVarsList.set(j, argsList.get(j)); } localVarsList.shiftLeft(2); } argsList.shift(i); if (node.nd_opt() != null) { NODE opt = node.nd_opt(); while (opt != null && argsList.size() != 0) { interpreter.assign(recv, opt.nd_head(), (RubyObject)argsList.get(0), true); argsList.shift(1); opt = opt.nd_next(); } interpreter.eval(recv, opt); } if (node.nd_rest() >= 0) { RubyArray array = null; if (argsList.size() > 0) { array = RubyArray.m_newArray(getRuby(), argsList); } else { array = RubyArray.m_newArray(getRuby(), 0); } localVarsList.set(node.nd_rest(), array); } } } result = interpreter.eval(recv, body); } catch (ReturnException rExcptn) { } RubyVarmap.pop(getRuby()); getRuby().rubyScope.pop(); interpreter.ruby_cref = savedCref; break; } default: { System.out.println("Not implemented yet (method call): " + id.toName() + ", node_type:" + body.nd_type()); } } interpreter.getRubyFrame().pop(); interpreter.getRubyIter().pop(); return result ; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/09d14a481cf7e28332c61c038c7d4b468854d38d/RubyModule.java/buggy/org/jruby/RubyModule.java |
suite.addTest(new TestSuite(TestVariableCreation.class)); | public static Test suite() throws Throwable { TestSuite suite = new TestSuite(); suite.addTest(new TestSuite(TestLoadService.class)); suite.addTest(new TestSuite(TestRubyObject.class)); suite.addTest(new TestSuite(TestRubyNil.class)); suite.addTest(new TestSuite(TestRubyHash.class)); suite.addTest(new TestSuite(TestRuby.class)); suite.addTest(new TestSuite(TestRequire.class)); suite.addTest(new TestSuite(TestJavaUtil.class)); suite.addTestSuite(TestJavaClass.class); suite.addTest(new TestSuite(TestKernel.class)); suite.addTest(new TestSuite(TestKernel.class)); suite.addTest(new TestSuite(TestRubyCollect.class)); suite.addTest(new TestSuite(TestObjectSpace.class)); suite.addTest(ScriptTestSuite.suite()); suite.addTest(new TestSuite(TestRubySymbol.class)); suite.addTest(JavaSupportTestSuite.suite()); suite.addTest(new TestSuite(TestIdentitySet.class)); suite.addTest(new TestSuite(TestCommandlineParser.class)); suite.addTest(new TestSuite(TestRubyException.class)); suite.addTest(new TestSuite(TestReflectionCallback.class)); suite.addTest(new TestSuite(TestRegexpTranslator.class)); suite.addTest(new TestSuite(TestAdoptedThreading.class)); suite.addTest(new TestSuite(TestRubyArray.class)); return suite; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/eae2033cf7fa8ef53b6779f340ded9966ebc2c2d/MainTestSuite.java/clean/test/org/jruby/test/MainTestSuite.java |
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public void testAPITask() { final File currentDir = new File(System.getProperty("user.dir")); final File commonDir = new File(currentDir.getParentFile().getPath() + File.separator + "common"); final class T extends APITask { public T() { DefaultLogger logger = new DefaultLogger(); logger.setMessageOutputLevel(Project.MSG_DEBUG); logger.setErrorPrintStream(System.err); logger.setOutputPrintStream(System.out); setProject(new Project()); getProject().setBasedir(commonDir.getPath()); getProject().addBuildListener(logger); getProject().init(); setTaskName("api"); setTaskType("api"); setOwningTarget(new Target()); } } T task = new T(); FileSet fileSet = new FileSet(); fileSet.setDir(commonDir); NameEntry entry = fileSet.createInclude(); entry.setName("**/api/*.java"); task.addFileset(fileSet); task.setDestdir(new File("/tmp")); task.execute(); } | public void testAPITask() {} | public void testAPITask() { final File currentDir = new File(System.getProperty("user.dir")); final File commonDir = new File(currentDir.getParentFile().getPath() + File.separator + "common"); final class T extends APITask { public T() { DefaultLogger logger = new DefaultLogger(); logger.setMessageOutputLevel(Project.MSG_DEBUG); logger.setErrorPrintStream(System.err); logger.setOutputPrintStream(System.out); setProject(new Project()); getProject().setBasedir(commonDir.getPath()); getProject().addBuildListener(logger); getProject().init(); setTaskName("api"); setTaskType("api"); setOwningTarget(new Target()); } } T task = new T(); FileSet fileSet = new FileSet(); fileSet.setDir(commonDir); NameEntry entry = fileSet.createInclude(); entry.setName("**/api/*.java"); task.addFileset(fileSet); task.setDestdir(new File("/tmp")); task.execute(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/c6b52b27590d0bcabcafbf7e427daa5dea8d72f4/AntTasksTest.java/clean/components/dsl/test/ome/dsl/utests/AntTasksTest.java |
RubyClass rubyClass = (RubyClass)getRecvNode().eval(ruby, self); if (rubyClass.isSpecialConst()) { throw new TypeError(ruby, "no virtual class for " + rubyClass.getRubyClass().toName()); | RubyClass type = (RubyClass)getRecvNode().eval(ruby, self); if (type.isSpecialConst()) { throw new TypeError(ruby, "no virtual class for " + type.getRubyClass().toName()); | public RubyObject eval(Ruby ruby, RubyObject self) { RubyClass rubyClass = (RubyClass)getRecvNode().eval(ruby, self); if (rubyClass.isSpecialConst()) { throw new TypeError(ruby, "no virtual class for " + rubyClass.getRubyClass().toName()); } if (ruby.getSafeLevel() >= 4 && !rubyClass.isTaint()) { throw new RubySecurityException(ruby, "Insecure: can't extend object"); } if (rubyClass.getRubyClass().isSingleton()) { // rb_clear_cache(); } ruby.setRubyClass(rubyClass.getSingletonClass()); if (ruby.getWrapper() != null) { rubyClass.getSingletonClass().includeModule(ruby.getWrapper()); rubyClass.includeModule(ruby.getWrapper()); } return ((ScopeNode)getBodyNode()).setupModule(ruby, rubyClass); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/SClassNode.java/clean/org/jruby/nodes/SClassNode.java |
if (ruby.getSafeLevel() >= 4 && !rubyClass.isTaint()) { | if (ruby.getSafeLevel() >= 4 && !type.isTaint()) { | public RubyObject eval(Ruby ruby, RubyObject self) { RubyClass rubyClass = (RubyClass)getRecvNode().eval(ruby, self); if (rubyClass.isSpecialConst()) { throw new TypeError(ruby, "no virtual class for " + rubyClass.getRubyClass().toName()); } if (ruby.getSafeLevel() >= 4 && !rubyClass.isTaint()) { throw new RubySecurityException(ruby, "Insecure: can't extend object"); } if (rubyClass.getRubyClass().isSingleton()) { // rb_clear_cache(); } ruby.setRubyClass(rubyClass.getSingletonClass()); if (ruby.getWrapper() != null) { rubyClass.getSingletonClass().includeModule(ruby.getWrapper()); rubyClass.includeModule(ruby.getWrapper()); } return ((ScopeNode)getBodyNode()).setupModule(ruby, rubyClass); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/SClassNode.java/clean/org/jruby/nodes/SClassNode.java |
if (rubyClass.getRubyClass().isSingleton()) { | if (type.getRubyClass().isSingleton()) { | public RubyObject eval(Ruby ruby, RubyObject self) { RubyClass rubyClass = (RubyClass)getRecvNode().eval(ruby, self); if (rubyClass.isSpecialConst()) { throw new TypeError(ruby, "no virtual class for " + rubyClass.getRubyClass().toName()); } if (ruby.getSafeLevel() >= 4 && !rubyClass.isTaint()) { throw new RubySecurityException(ruby, "Insecure: can't extend object"); } if (rubyClass.getRubyClass().isSingleton()) { // rb_clear_cache(); } ruby.setRubyClass(rubyClass.getSingletonClass()); if (ruby.getWrapper() != null) { rubyClass.getSingletonClass().includeModule(ruby.getWrapper()); rubyClass.includeModule(ruby.getWrapper()); } return ((ScopeNode)getBodyNode()).setupModule(ruby, rubyClass); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/SClassNode.java/clean/org/jruby/nodes/SClassNode.java |
ruby.setRubyClass(rubyClass.getSingletonClass()); | type = type.getSingletonClass(); | public RubyObject eval(Ruby ruby, RubyObject self) { RubyClass rubyClass = (RubyClass)getRecvNode().eval(ruby, self); if (rubyClass.isSpecialConst()) { throw new TypeError(ruby, "no virtual class for " + rubyClass.getRubyClass().toName()); } if (ruby.getSafeLevel() >= 4 && !rubyClass.isTaint()) { throw new RubySecurityException(ruby, "Insecure: can't extend object"); } if (rubyClass.getRubyClass().isSingleton()) { // rb_clear_cache(); } ruby.setRubyClass(rubyClass.getSingletonClass()); if (ruby.getWrapper() != null) { rubyClass.getSingletonClass().includeModule(ruby.getWrapper()); rubyClass.includeModule(ruby.getWrapper()); } return ((ScopeNode)getBodyNode()).setupModule(ruby, rubyClass); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/SClassNode.java/clean/org/jruby/nodes/SClassNode.java |
rubyClass.getSingletonClass().includeModule(ruby.getWrapper()); rubyClass.includeModule(ruby.getWrapper()); | type.extendObject(ruby.getWrapper()); type.includeModule(ruby.getWrapper()); | public RubyObject eval(Ruby ruby, RubyObject self) { RubyClass rubyClass = (RubyClass)getRecvNode().eval(ruby, self); if (rubyClass.isSpecialConst()) { throw new TypeError(ruby, "no virtual class for " + rubyClass.getRubyClass().toName()); } if (ruby.getSafeLevel() >= 4 && !rubyClass.isTaint()) { throw new RubySecurityException(ruby, "Insecure: can't extend object"); } if (rubyClass.getRubyClass().isSingleton()) { // rb_clear_cache(); } ruby.setRubyClass(rubyClass.getSingletonClass()); if (ruby.getWrapper() != null) { rubyClass.getSingletonClass().includeModule(ruby.getWrapper()); rubyClass.includeModule(ruby.getWrapper()); } return ((ScopeNode)getBodyNode()).setupModule(ruby, rubyClass); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/SClassNode.java/clean/org/jruby/nodes/SClassNode.java |
return ((ScopeNode)getBodyNode()).setupModule(ruby, rubyClass); | return ((ScopeNode)getBodyNode()).setupModule(ruby, type); | public RubyObject eval(Ruby ruby, RubyObject self) { RubyClass rubyClass = (RubyClass)getRecvNode().eval(ruby, self); if (rubyClass.isSpecialConst()) { throw new TypeError(ruby, "no virtual class for " + rubyClass.getRubyClass().toName()); } if (ruby.getSafeLevel() >= 4 && !rubyClass.isTaint()) { throw new RubySecurityException(ruby, "Insecure: can't extend object"); } if (rubyClass.getRubyClass().isSingleton()) { // rb_clear_cache(); } ruby.setRubyClass(rubyClass.getSingletonClass()); if (ruby.getWrapper() != null) { rubyClass.getSingletonClass().includeModule(ruby.getWrapper()); rubyClass.includeModule(ruby.getWrapper()); } return ((ScopeNode)getBodyNode()).setupModule(ruby, rubyClass); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/d31a76ee29d5978a9bec41e3ac9134cee024bcab/SClassNode.java/clean/org/jruby/nodes/SClassNode.java |
private void dumpClasses(PackageData packageData) | private void dumpClasses(SourceFileData sourceFileData) | private void dumpClasses(PackageData packageData) { println("<classes>"); increaseIndentation(); Iterator it = packageData.getChildren().iterator(); while (it.hasNext()) { dumpClass((ClassData)it.next()); } decreaseIndentation(); println("</classes>"); } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/2d04adc2554406c41824d5b965907076ecdceb80/XMLReport.java/buggy/cobertura/src/net/sourceforge/cobertura/reporting/xml/XMLReport.java |
println("<classes>"); increaseIndentation(); Iterator it = packageData.getChildren().iterator(); | Iterator it = sourceFileData.getChildren().iterator(); | private void dumpClasses(PackageData packageData) { println("<classes>"); increaseIndentation(); Iterator it = packageData.getChildren().iterator(); while (it.hasNext()) { dumpClass((ClassData)it.next()); } decreaseIndentation(); println("</classes>"); } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/2d04adc2554406c41824d5b965907076ecdceb80/XMLReport.java/buggy/cobertura/src/net/sourceforge/cobertura/reporting/xml/XMLReport.java |
decreaseIndentation(); println("</classes>"); | private void dumpClasses(PackageData packageData) { println("<classes>"); increaseIndentation(); Iterator it = packageData.getChildren().iterator(); while (it.hasNext()) { dumpClass((ClassData)it.next()); } decreaseIndentation(); println("</classes>"); } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/2d04adc2554406c41824d5b965907076ecdceb80/XMLReport.java/buggy/cobertura/src/net/sourceforge/cobertura/reporting/xml/XMLReport.java |
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dumpClasses(packageData); | dumpSourceFiles(packageData); | private void dumpPackage(PackageData packageData) { logger.debug("Dumping package " + packageData.getName()); double ccn = Util.getCCN(new File(sourceDirectory, packageData .getSourceFileName()), false); println("<package name=\"" + packageData.getName() + "\" line-rate=\"" + packageData.getLineCoverageRate() + "\" branch-rate=\"" + packageData.getBranchCoverageRate() + "\" complexity=\"" + ccn + "\"" + ">"); increaseIndentation(); dumpClasses(packageData); decreaseIndentation(); println("</package>"); } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/2d04adc2554406c41824d5b965907076ecdceb80/XMLReport.java/buggy/cobertura/src/net/sourceforge/cobertura/reporting/xml/XMLReport.java |
if (component instanceof EditorUI) ((EditorUI) component) .setComponentsSize(workingPane.getBounds().width); | void addComponent(JComponent component) { if (component instanceof EditorUI) ((EditorUI) component) .setComponentsSize(workingPane.getBounds().width); JViewport viewPort = workingPane.getViewport(); viewPort.removeAll(); viewPort.add(component); viewPort.validate(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/bbf37bc5e7bfdcd4fb5d2a4ffa6f315d6563694f/TreeViewerWin.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/view/TreeViewerWin.java |
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/* if (b) { JSplitPane pane = new JSplitPane(); pane.setOrientation(JSplitPane.VERTICAL_SPLIT); pane.setResizeWeight(1); pane.setOneTouchExpandable(true); pane.setContinuousLayout(true); pane.setTopComponent(workingPane); pane.setBottomComponent(model.getFinder()); splitPane.setRightComponent(pane); } else { splitPane.remove(splitPane.getRightComponent()); splitPane.setRightComponent(workingPane); } splitPane.setDividerLocation(splitPane.getDividerLocation()); splitPane.repaint(); */ | void showFinder(boolean b) { /* if (b) { //finder visible. JSplitPane pane = new JSplitPane(); pane.setOrientation(JSplitPane.VERTICAL_SPLIT); pane.setResizeWeight(1); pane.setOneTouchExpandable(true); pane.setContinuousLayout(true); pane.setTopComponent(workingPane); pane.setBottomComponent(model.getFinder()); splitPane.setRightComponent(pane); } else { splitPane.remove(splitPane.getRightComponent()); splitPane.setRightComponent(workingPane); } splitPane.setDividerLocation(splitPane.getDividerLocation()); splitPane.repaint(); */ JSplitPane pane = null; if (b) { //finder visible. pane = new JSplitPane(); pane.setOrientation(JSplitPane.VERTICAL_SPLIT); pane.setResizeWeight(1); pane.setOneTouchExpandable(true); pane.setContinuousLayout(true); pane.setTopComponent(splitPane); pane.setBottomComponent(model.getFinder()); } else pane = splitPane; Container c = getContentPane(); c.removeAll(); c.add(pane, BorderLayout.CENTER); c.validate(); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/bbf37bc5e7bfdcd4fb5d2a4ffa6f315d6563694f/TreeViewerWin.java/buggy/SRC/org/openmicroscopy/shoola/agents/treeviewer/view/TreeViewerWin.java |
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return Collections.EMPTY_LIST; | return EMPTY_LIST; | public List childNodes() { return Collections.EMPTY_LIST; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/b1293eda8454686e846e2a9837b348e2983bb423/FalseNode.java/clean/src/org/jruby/ast/FalseNode.java |
WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "clear"); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setLocaleId", "sv"); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setHeadline", "headline"); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setBody", id); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setAuthor", "author"); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setComment", "comment"); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setDescription", "description"); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setSource", "source"); if (link.getId().equals(ArticleListBean.ARTICLE_ID)) { WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setStatus", ContentItemCase.STATUS_PUBLISHED); } else { WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setStatus", ContentItemCase.STATUS_UNDER_REVIEW); | ArticleItemBean articleItem = new ArticleItemBean(); try { articleItem.load(id); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "clear"); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setLocaleId", "en"); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setHeadline", notNull(articleItem.getHeadline())); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setTeaser", notNull(articleItem.getTeaser())); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setBody", notNull(articleItem.getBody())); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setAuthor", notNull(articleItem.getAuthor())); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setComment", notNull(articleItem.getComment())); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setDescription", notNull(articleItem.getDescription())); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setStatus", ContentItemCase.STATUS_PUBLISHED ); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setMainCategoryId", new Integer(3)); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setMainCategory", articleItem.getMainCategory()); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setLocaleId", "sv"); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setHeadline", notNull(articleItem.getHeadline())); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setTeaser", notNull(articleItem.getTeaser())); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setBody", notNull(articleItem.getBody())); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setAuthor", notNull(articleItem.getAuthor())); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setMainCategory", articleItem.getMainCategory()); | public void processAction(ActionEvent event) { UIComponent link = event.getComponent(); ArticleBlock ab = null; String id = WFUtil.getParameter(link, "id"); UIComponent component = link.getParent().getParent().getParent().findComponent(MAIN_TASKBAR_ID); if(component instanceof WFTabbedPane){ WFTabbedPane tb = (WFTabbedPane) component; tb.setSelectedMenuItemId(TASK_ID_EDIT); ab = (ArticleBlock) tb.findComponent(ArticleBlock.ARTICLE_BLOCK_ID); ab.setEditMode(); } WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "clear"); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setLocaleId", "sv"); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setHeadline", "headline"); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setBody", id); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setAuthor", "author"); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setComment", "comment"); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setDescription", "description"); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setSource", "source"); if (link.getId().equals(ArticleListBean.ARTICLE_ID)) { WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setStatus", ContentItemCase.STATUS_PUBLISHED); } else { WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setStatus", ContentItemCase.STATUS_UNDER_REVIEW); } WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setMainCategoryId", new Integer(3)); if(ab!=null){ ab.updateEditButtons(); } } | 57000 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57000/72fe15183822be99f6dfa9d697bce89864c5f7d8/CMSPage.java/clean/src/java/com/idega/block/article/CMSPage.java |
WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setMainCategoryId", new Integer(3)); | catch (XmlException e) { e.printStackTrace(); } catch (IOException e) { e.printStackTrace(); } | public void processAction(ActionEvent event) { UIComponent link = event.getComponent(); ArticleBlock ab = null; String id = WFUtil.getParameter(link, "id"); UIComponent component = link.getParent().getParent().getParent().findComponent(MAIN_TASKBAR_ID); if(component instanceof WFTabbedPane){ WFTabbedPane tb = (WFTabbedPane) component; tb.setSelectedMenuItemId(TASK_ID_EDIT); ab = (ArticleBlock) tb.findComponent(ArticleBlock.ARTICLE_BLOCK_ID); ab.setEditMode(); } WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "clear"); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setLocaleId", "sv"); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setHeadline", "headline"); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setBody", id); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setAuthor", "author"); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setComment", "comment"); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setDescription", "description"); WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setSource", "source"); if (link.getId().equals(ArticleListBean.ARTICLE_ID)) { WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setStatus", ContentItemCase.STATUS_PUBLISHED); } else { WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setStatus", ContentItemCase.STATUS_UNDER_REVIEW); } WFUtil.invoke(ARTICLE_ITEM_BEAN_ID, "setMainCategoryId", new Integer(3)); if(ab!=null){ ab.updateEditButtons(); } } | 57000 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/57000/72fe15183822be99f6dfa9d697bce89864c5f7d8/CMSPage.java/clean/src/java/com/idega/block/article/CMSPage.java |
fixnumClass.defineMethod("to_str", getMethod("m_to_s")); | public static RubyClass createFixnum(Ruby ruby) { RubyClass fixnumClass = ruby.defineClass("Fixnum", ruby.getClasses().getIntegerClass()); fixnumClass.defineMethod("to_i", getMethod("m_to_i")); fixnumClass.defineMethod("to_s", getMethod("m_to_s")); fixnumClass.defineMethod("+", getMethod("op_plus", RubyNumeric.class)); fixnumClass.defineMethod("-", getMethod("op_minus", RubyNumeric.class)); fixnumClass.defineMethod("*", getMethod("op_mul", RubyNumeric.class)); fixnumClass.defineMethod("/", getMethod("op_div", RubyNumeric.class)); fixnumClass.defineMethod("%", getMethod("op_mod", RubyNumeric.class)); fixnumClass.defineMethod("**", getMethod("op_pow", RubyNumeric.class)); fixnumClass.defineMethod("==", getMethod("op_equal", RubyNumeric.class)); fixnumClass.defineMethod("<=>", getMethod("op_cmp", RubyNumeric.class)); fixnumClass.defineMethod(">", getMethod("op_gt", RubyNumeric.class)); fixnumClass.defineMethod(">=", getMethod("op_ge", RubyNumeric.class)); fixnumClass.defineMethod("<", getMethod("op_lt", RubyNumeric.class)); fixnumClass.defineMethod("<=", getMethod("op_le", RubyNumeric.class)); return fixnumClass; } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/f629550c5947df9c1dbe414645f3dc76bcb70df4/RbFixnum.java/clean/org/jruby/core/RbFixnum.java |
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return ((JRubyConstructor)ctor).runtime.newTime(((Date)SafeConstructorImpl.constructYamlTimestamp(ctor,node)).getTime()); | return ((JRubyConstructor)ctor).runtime.newTime(((Date)SafeConstructorImpl.constructYamlTimestamp(ctor,node)).getTime()).callMethod(((JRubyConstructor)ctor).runtime.getCurrentContext(),"utc"); | public static Object constructYamlTimestamp(final Constructor ctor, final Node node) { return ((JRubyConstructor)ctor).runtime.newTime(((Date)SafeConstructorImpl.constructYamlTimestamp(ctor,node)).getTime()); } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/a7496d30c994b238998690eb28c237de52e1a3b6/JRubyConstructor.java/buggy/src/org/jruby/yaml/JRubyConstructor.java |
ILink[] retVal = (ILink[])iUpdate.saveAndReturnArray(arg0); collectCounts( retVal, new PojoOptions(arg1) ); return retVal; | IObject[] retVal = iUpdate.saveAndReturnArray(arg0); ILink[] links = new ILink[retVal.length]; System.arraycopy(retVal, 0, links, 0, retVal.length); collectCounts( links, new PojoOptions(arg1) ); return links; | public ILink[] link(ILink[] arg0, Map arg1) { ILink[] retVal = (ILink[])iUpdate.saveAndReturnArray(arg0); collectCounts( retVal, new PojoOptions(arg1) ); return retVal; } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/e1b76ed719977cee99d8f5cc8eb06bcf7b7eee4c/PojosImpl.java/clean/components/server/src/ome/logic/PojosImpl.java |
return super.resolveEntity(publicId, systemId); | InputSource source = null; try { super.resolveEntity(publicId, systemId); } catch (Exception exception) { throw new SAXException(exception); } return source; | public InputSource resolveEntity(String publicId, String systemId) throws SAXException { // If the requested entity is our cobertura DTD, then use the local // version instead of the remote version try { if (systemId.equals(coverageDTD)) return new InputSource(new FileInputStream(localDTD)); } catch (FileNotFoundException e) { System.out.println("Unable to open local DTD file " + localDTD.getAbsolutePath() + ", using " + systemId + " instead."); } return super.resolveEntity(publicId, systemId); } | 50197 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50197/aa28e2370adfa8f4e4ecc6102e67283dbce474d8/JUnitXMLParserEntityResolver.java/clean/cobertura/test/net/sourceforge/cobertura/reporting/xml/JUnitXMLParserEntityResolver.java |
if (startFieldValid()) | if (endFieldValid()) | private void endSelectionHandler() { double s = model.getWindowStart(); double val = Double.parseDouble(endField.getText()); if (val == model.getWindowEnd()) return; if (startFieldValid()) { controller.setInputInterval(s, val, true); onCurveChange(); } else { startField.selectAll(); UserNotifier un = ImViewerAgent.getRegistry().getUserNotifier(); un.notifyInfo("Invalid pixels intensity interval", "["+val+","+s+"]"); } } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/014315640235a4a52d00b660672441a07dfa10ea/GraphicsPane.java/buggy/SRC/org/openmicroscopy/shoola/agents/imviewer/rnd/GraphicsPane.java |
startField.selectAll(); | endField.selectAll(); | private void endSelectionHandler() { double s = model.getWindowStart(); double val = Double.parseDouble(endField.getText()); if (val == model.getWindowEnd()) return; if (startFieldValid()) { controller.setInputInterval(s, val, true); onCurveChange(); } else { startField.selectAll(); UserNotifier un = ImViewerAgent.getRegistry().getUserNotifier(); un.notifyInfo("Invalid pixels intensity interval", "["+val+","+s+"]"); } } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/014315640235a4a52d00b660672441a07dfa10ea/GraphicsPane.java/buggy/SRC/org/openmicroscopy/shoola/agents/imviewer/rnd/GraphicsPane.java |
"["+val+","+s+"]"); | "["+s+","+val+"]"); | private void endSelectionHandler() { double s = model.getWindowStart(); double val = Double.parseDouble(endField.getText()); if (val == model.getWindowEnd()) return; if (startFieldValid()) { controller.setInputInterval(s, val, true); onCurveChange(); } else { startField.selectAll(); UserNotifier un = ImViewerAgent.getRegistry().getUserNotifier(); un.notifyInfo("Invalid pixels intensity interval", "["+val+","+s+"]"); } } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/014315640235a4a52d00b660672441a07dfa10ea/GraphicsPane.java/buggy/SRC/org/openmicroscopy/shoola/agents/imviewer/rnd/GraphicsPane.java |
UserNotifier un = ImViewerAgent.getRegistry().getUserNotifier(); un.notifyInfo("Invalid pixels intensity interval", "["+startField.getText()+","+model.getWindowEnd()+"]"); | public void focusLost(FocusEvent fe) { if (fe.getSource() == startField) if (startFieldValid()) startSelectionHandler(); else { UserNotifier un = ImViewerAgent.getRegistry().getUserNotifier(); un.notifyInfo("Invalid pixels intensity interval", "["+startField.getText()+","+model.getWindowEnd()+"]"); startField.setText(model.getWindowStart()+""); } if (fe.getSource() == endField) if (endFieldValid()) endSelectionHandler(); else { UserNotifier un = ImViewerAgent.getRegistry().getUserNotifier(); un.notifyInfo("Invalid pixels intensity interval", "["+model.getWindowStart()+","+endField.getText()+"]"); endField.setText(model.getWindowEnd()+""); } } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/014315640235a4a52d00b660672441a07dfa10ea/GraphicsPane.java/buggy/SRC/org/openmicroscopy/shoola/agents/imviewer/rnd/GraphicsPane.java |
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UserNotifier un = ImViewerAgent.getRegistry().getUserNotifier(); un.notifyInfo("Invalid pixels intensity interval", "["+model.getWindowStart()+","+endField.getText()+"]"); | public void focusLost(FocusEvent fe) { if (fe.getSource() == startField) if (startFieldValid()) startSelectionHandler(); else { UserNotifier un = ImViewerAgent.getRegistry().getUserNotifier(); un.notifyInfo("Invalid pixels intensity interval", "["+startField.getText()+","+model.getWindowEnd()+"]"); startField.setText(model.getWindowStart()+""); } if (fe.getSource() == endField) if (endFieldValid()) endSelectionHandler(); else { UserNotifier un = ImViewerAgent.getRegistry().getUserNotifier(); un.notifyInfo("Invalid pixels intensity interval", "["+model.getWindowStart()+","+endField.getText()+"]"); endField.setText(model.getWindowEnd()+""); } } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/014315640235a4a52d00b660672441a07dfa10ea/GraphicsPane.java/buggy/SRC/org/openmicroscopy/shoola/agents/imviewer/rnd/GraphicsPane.java |
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public void focusLost(FocusEvent fe) { if (fe.getSource() == startField) if (startFieldValid()) startSelectionHandler(); else { UserNotifier un = ImViewerAgent.getRegistry().getUserNotifier(); un.notifyInfo("Invalid pixels intensity interval", "["+startField.getText()+","+model.getWindowEnd()+"]"); startField.setText(model.getWindowStart()+""); } if (fe.getSource() == endField) if (endFieldValid()) endSelectionHandler(); else { UserNotifier un = ImViewerAgent.getRegistry().getUserNotifier(); un.notifyInfo("Invalid pixels intensity interval", "["+model.getWindowStart()+","+endField.getText()+"]"); endField.setText(model.getWindowEnd()+""); } } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/014315640235a4a52d00b660672441a07dfa10ea/GraphicsPane.java/buggy/SRC/org/openmicroscopy/shoola/agents/imviewer/rnd/GraphicsPane.java |
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TransportManager.unregister(con, item.getTransport().getServiceName()); | TransportUtils.unregister(con, item.getTransport().getServiceName()); | public Transports(final XMPPConnection con) { setLayout(new GridBagLayout()); list = new JList(model); // Use JPanel Renderer list.setCellRenderer(new JPanelRenderer()); TitlePanel titlePanel = new TitlePanel(Res.getString("title.available.transports"), Res.getString("message.register.transports"), null, true); add(titlePanel, new GridBagConstraints(0, 0, 1, 1, 1.0, 0.0, GridBagConstraints.NORTH, GridBagConstraints.HORIZONTAL, new Insets(0, 0, 0, 0), 0, 0)); final JScrollPane pane = new JScrollPane(list); add(pane, new GridBagConstraints(0, 1, 1, 1, 1.0, 1.0, GridBagConstraints.CENTER, GridBagConstraints.BOTH, new Insets(0, 0, 0, 0), 0, 0)); list.addMouseListener(new MouseAdapter() { public void mouseClicked(MouseEvent e) { if (e.getClickCount() == 2) { TransportItem item = (TransportItem)list.getSelectedValue(); Presence presence = con.getRoster().getPresence(item.getTransport().getServiceName()); boolean registered = presence != null && presence.getMode() != null; if (registered) { int confirm = JOptionPane.showConfirmDialog(item, Res.getString("message.disable.transport"), Res.getString("title.disable.transport"), JOptionPane.YES_NO_OPTION); if (confirm == JOptionPane.YES_OPTION) { try { TransportManager.unregister(con, item.getTransport().getServiceName()); } catch (XMPPException e1) { e1.printStackTrace(); } } } else { // registrationDialog.registerWithService(con, item.getTransport().getServiceName()); } } } }); for (Transport transport : TransportManager.getTransports()) { final TransportItem transportItem = new TransportItem(transport, TransportManager.isRegistered(con, transport), transport.getServiceName()); model.addElement(transportItem); } } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/d039de56513c7dd0e3c5c2762f184ca886fb4900/Transports.java/clean/src/java/org/jivesoftware/sparkimpl/plugin/gateways/Transports.java |
for (Transport transport : TransportManager.getTransports()) { final TransportItem transportItem = new TransportItem(transport, TransportManager.isRegistered(con, transport), transport.getServiceName()); | for (Transport transport : TransportUtils.getTransports()) { final TransportItem transportItem = new TransportItem(transport, TransportUtils.isRegistered(con, transport), transport.getServiceName()); | public Transports(final XMPPConnection con) { setLayout(new GridBagLayout()); list = new JList(model); // Use JPanel Renderer list.setCellRenderer(new JPanelRenderer()); TitlePanel titlePanel = new TitlePanel(Res.getString("title.available.transports"), Res.getString("message.register.transports"), null, true); add(titlePanel, new GridBagConstraints(0, 0, 1, 1, 1.0, 0.0, GridBagConstraints.NORTH, GridBagConstraints.HORIZONTAL, new Insets(0, 0, 0, 0), 0, 0)); final JScrollPane pane = new JScrollPane(list); add(pane, new GridBagConstraints(0, 1, 1, 1, 1.0, 1.0, GridBagConstraints.CENTER, GridBagConstraints.BOTH, new Insets(0, 0, 0, 0), 0, 0)); list.addMouseListener(new MouseAdapter() { public void mouseClicked(MouseEvent e) { if (e.getClickCount() == 2) { TransportItem item = (TransportItem)list.getSelectedValue(); Presence presence = con.getRoster().getPresence(item.getTransport().getServiceName()); boolean registered = presence != null && presence.getMode() != null; if (registered) { int confirm = JOptionPane.showConfirmDialog(item, Res.getString("message.disable.transport"), Res.getString("title.disable.transport"), JOptionPane.YES_NO_OPTION); if (confirm == JOptionPane.YES_OPTION) { try { TransportManager.unregister(con, item.getTransport().getServiceName()); } catch (XMPPException e1) { e1.printStackTrace(); } } } else { // registrationDialog.registerWithService(con, item.getTransport().getServiceName()); } } } }); for (Transport transport : TransportManager.getTransports()) { final TransportItem transportItem = new TransportItem(transport, TransportManager.isRegistered(con, transport), transport.getServiceName()); model.addElement(transportItem); } } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/d039de56513c7dd0e3c5c2762f184ca886fb4900/Transports.java/clean/src/java/org/jivesoftware/sparkimpl/plugin/gateways/Transports.java |
TransportManager.unregister(con, item.getTransport().getServiceName()); | TransportUtils.unregister(con, item.getTransport().getServiceName()); | public void mouseClicked(MouseEvent e) { if (e.getClickCount() == 2) { TransportItem item = (TransportItem)list.getSelectedValue(); Presence presence = con.getRoster().getPresence(item.getTransport().getServiceName()); boolean registered = presence != null && presence.getMode() != null; if (registered) { int confirm = JOptionPane.showConfirmDialog(item, Res.getString("message.disable.transport"), Res.getString("title.disable.transport"), JOptionPane.YES_NO_OPTION); if (confirm == JOptionPane.YES_OPTION) { try { TransportManager.unregister(con, item.getTransport().getServiceName()); } catch (XMPPException e1) { e1.printStackTrace(); } } } else { // registrationDialog.registerWithService(con, item.getTransport().getServiceName()); } } } | 52006 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52006/d039de56513c7dd0e3c5c2762f184ca886fb4900/Transports.java/clean/src/java/org/jivesoftware/sparkimpl/plugin/gateways/Transports.java |
return "ImageAnnotation"+(attributeId==null ? ":Hash"+this.hashCode() : ":"+attributeId); | return "ImageAnnotation"+(attributeId==null ? ":Hash_"+this.hashCode() : ":Id_"+attributeId); | public String toString(){ return "ImageAnnotation"+(attributeId==null ? ":Hash"+this.hashCode() : ":"+attributeId); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/51a3c546dfc7a7a98b29771a459df19094fc5b51/ImageAnnotation.java/buggy/components/common/src/ome/model/ImageAnnotation.java |
this(fileSettings(WEBMACRO_PROPERTIES,null), WEBMACRO_PROPERTIES, null); | this(fileSettings(WEBMACRO_PROPERTIES), WEBMACRO_PROPERTIES); | public Broker() throws InitException { this(fileSettings(WEBMACRO_PROPERTIES,null), WEBMACRO_PROPERTIES, null); } | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/c2d009387a686003be3c3f30bc84f3a302311279/Broker.java/buggy/webmacro/src/org/webmacro/Broker.java |
static private Settings fileSettings(String name, ClassLoader cl) throws InitException | static private Settings fileSettings(String name) throws InitException | static private Settings fileSettings(String name, ClassLoader cl) throws InitException { try { Settings s = initSettings(cl); s.load(name,cl); return s; } catch (IOException e) { throw new InitException("Error reading from " + name, e); } } | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/c2d009387a686003be3c3f30bc84f3a302311279/Broker.java/buggy/webmacro/src/org/webmacro/Broker.java |
Settings s = initSettings(cl); s.load(name,cl); | Settings s = initSettings(); s.load(name); | static private Settings fileSettings(String name, ClassLoader cl) throws InitException { try { Settings s = initSettings(cl); s.load(name,cl); return s; } catch (IOException e) { throw new InitException("Error reading from " + name, e); } } | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/c2d009387a686003be3c3f30bc84f3a302311279/Broker.java/buggy/webmacro/src/org/webmacro/Broker.java |
static private Settings initSettings(ClassLoader cl) throws InitException | static private Settings initSettings() throws InitException | static private Settings initSettings(ClassLoader cl) throws InitException { Settings defaults = new Settings(); try { defaults.load(WEBMACRO_DEFAULTS,cl); } catch (java.io.IOException e) { throw new InitException("IO Error reading " + WEBMACRO_DEFAULTS, e); } return new Settings(defaults); } | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/c2d009387a686003be3c3f30bc84f3a302311279/Broker.java/buggy/webmacro/src/org/webmacro/Broker.java |
defaults.load(WEBMACRO_DEFAULTS,cl); | defaults.load(WEBMACRO_DEFAULTS); | static private Settings initSettings(ClassLoader cl) throws InitException { Settings defaults = new Settings(); try { defaults.load(WEBMACRO_DEFAULTS,cl); } catch (java.io.IOException e) { throw new InitException("IO Error reading " + WEBMACRO_DEFAULTS, e); } return new Settings(defaults); } | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/c2d009387a686003be3c3f30bc84f3a302311279/Broker.java/buggy/webmacro/src/org/webmacro/Broker.java |
static private Settings urlSettings(URL u, ClassLoader cl) throws InitException | static private Settings urlSettings(URL u) throws InitException | static private Settings urlSettings(URL u, ClassLoader cl) throws InitException { try { Settings s = initSettings(cl); s.load(u); return s; } catch (IOException e) { throw new InitException("Error reading from " + u.toString(), e); } } | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/c2d009387a686003be3c3f30bc84f3a302311279/Broker.java/buggy/webmacro/src/org/webmacro/Broker.java |
Settings s = initSettings(cl); | Settings s = initSettings(); | static private Settings urlSettings(URL u, ClassLoader cl) throws InitException { try { Settings s = initSettings(cl); s.load(u); return s; } catch (IOException e) { throw new InitException("Error reading from " + u.toString(), e); } } | 52513 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52513/c2d009387a686003be3c3f30bc84f3a302311279/Broker.java/buggy/webmacro/src/org/webmacro/Broker.java |
Class cl = Class.forName("org.springframework.beans.factory.xml.BeanDefinitionParserDelegate"); | private static String getVersion() { if (version == null) { try { Class cl = Class.forName("org.springframework.beans.factory.xml.BeanDefinitionParserDelegate"); try { cl.getMethod("parsePropertyElements", new Class[] { Element.class, BeanDefinition.class }); version = "v2b"; } catch (NoSuchMethodException e) { version = "v2a"; } } catch (Throwable e) { throw (IllegalStateException) new IllegalStateException("Could not create namespace handler for: " + version).initCause(e); } } return version; } | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/229fabc3f6789bc24d41b0cf252788ec82e9d725/XBeanV2Helper.java/buggy/xbean-spring-v2/src/main/java/org/apache/xbean/spring/context/v2/XBeanV2Helper.java |
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cl.getMethod("parsePropertyElements", new Class[] { Element.class, BeanDefinition.class }); version = "v2b"; } catch (NoSuchMethodException e) { version = "v2a"; | Class.forName("org.springframework.beans.factory.parsing.BeanComponentDefinition"); version = "v2c"; } catch (ClassNotFoundException e) { Class cl = Class.forName("org.springframework.beans.factory.xml.BeanDefinitionParserDelegate"); try { cl.getMethod("parsePropertyElements", new Class[] { Element.class, BeanDefinition.class }); version = "v2b"; } catch (NoSuchMethodException e2) { version = "v2a"; } | private static String getVersion() { if (version == null) { try { Class cl = Class.forName("org.springframework.beans.factory.xml.BeanDefinitionParserDelegate"); try { cl.getMethod("parsePropertyElements", new Class[] { Element.class, BeanDefinition.class }); version = "v2b"; } catch (NoSuchMethodException e) { version = "v2a"; } } catch (Throwable e) { throw (IllegalStateException) new IllegalStateException("Could not create namespace handler for: " + version).initCause(e); } } return version; } | 52533 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/52533/229fabc3f6789bc24d41b0cf252788ec82e9d725/XBeanV2Helper.java/buggy/xbean-spring-v2/src/main/java/org/apache/xbean/spring/context/v2/XBeanV2Helper.java |
UIUtilities.centerAndShow(this); | public ROIStatsSaver(ROIStatsMng mng, ROIAgtCtrl control) { super(control.getReferenceFrame(), "Save ROI results", true); manager = new ROIStatsSaverMng(this, mng, control); buildGUI(IconManager.getInstance(control.getRegistry())); pack(); UIUtilities.centerAndShow(this); } | 54698 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/54698/0f84715d97fb9bad35cd75d5c742a1473fe1f109/ROIStatsSaver.java/clean/SRC/org/openmicroscopy/shoola/agents/roi/util/ROIStatsSaver.java |
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throw new RaiseException(ruby, "RuntimeError", iaExcptn.getMessage()); | throw new RaiseException(ruby, "RuntimeError", iaExcptn.getMessage()); | protected RubyObject invokeMethod(RubyObject recv, Object[] methodArgs, Ruby ruby) { if (restArgs) { RubyObject[] restArray = new RubyObject[methodArgs.length - (args.length - 1)]; Object[] newMethodArgs = new Object[args.length]; try { System.arraycopy(methodArgs, args.length - 1, restArray, 0, methodArgs.length - (args.length - 1)); } catch (ArrayIndexOutOfBoundsException aioobExcptn) { throw new RuntimeException("Cannot call \"" + methodName + "\" in class \"" + klass.getName() + "\". " + getExceptedArgsString((RubyObject[])methodArgs)); } System.arraycopy(methodArgs, 0, newMethodArgs, 0, args.length - 1); newMethodArgs[args.length - 1] = restArray; methodArgs = newMethodArgs; } if (staticMethod) { Object[] newMethodArgs = new Object[methodArgs.length + 2]; System.arraycopy(methodArgs, 0, newMethodArgs, 2, methodArgs.length); newMethodArgs[0] = ruby; newMethodArgs[1] = recv; methodArgs = newMethodArgs; } try { return (RubyObject)getMethod().invoke(staticMethod ? null : recv, methodArgs); } catch (InvocationTargetException itExcptn) { if (itExcptn.getTargetException() instanceof RaiseException) { throw (RaiseException)itExcptn.getTargetException(); } else { itExcptn.getTargetException().printStackTrace(); return ruby.getNil(); } } catch (IllegalAccessException iaExcptn) { throw new RaiseException(ruby, "RuntimeError", iaExcptn.getMessage()); } catch (IllegalArgumentException iaExcptn) { throw new RaiseException(ruby, "RuntimeError", iaExcptn.getMessage()); } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/0a7181933af700ea8025a4197f3a5ebcc08333c3/ReflectionCallbackMethod.java/clean/org/jruby/core/ReflectionCallbackMethod.java |
throw new RaiseException(ruby, "RuntimeError", iaExcptn.getMessage()); | throw new RaiseException(ruby, "RuntimeError", iaExcptn.getMessage()); | protected RubyObject invokeMethod(RubyObject recv, Object[] methodArgs, Ruby ruby) { if (restArgs) { RubyObject[] restArray = new RubyObject[methodArgs.length - (args.length - 1)]; Object[] newMethodArgs = new Object[args.length]; try { System.arraycopy(methodArgs, args.length - 1, restArray, 0, methodArgs.length - (args.length - 1)); } catch (ArrayIndexOutOfBoundsException aioobExcptn) { throw new RuntimeException("Cannot call \"" + methodName + "\" in class \"" + klass.getName() + "\". " + getExceptedArgsString((RubyObject[])methodArgs)); } System.arraycopy(methodArgs, 0, newMethodArgs, 0, args.length - 1); newMethodArgs[args.length - 1] = restArray; methodArgs = newMethodArgs; } if (staticMethod) { Object[] newMethodArgs = new Object[methodArgs.length + 2]; System.arraycopy(methodArgs, 0, newMethodArgs, 2, methodArgs.length); newMethodArgs[0] = ruby; newMethodArgs[1] = recv; methodArgs = newMethodArgs; } try { return (RubyObject)getMethod().invoke(staticMethod ? null : recv, methodArgs); } catch (InvocationTargetException itExcptn) { if (itExcptn.getTargetException() instanceof RaiseException) { throw (RaiseException)itExcptn.getTargetException(); } else { itExcptn.getTargetException().printStackTrace(); return ruby.getNil(); } } catch (IllegalAccessException iaExcptn) { throw new RaiseException(ruby, "RuntimeError", iaExcptn.getMessage()); } catch (IllegalArgumentException iaExcptn) { throw new RaiseException(ruby, "RuntimeError", iaExcptn.getMessage()); } } | 50661 /local/tlutelli/issta_data/temp/all_java5context/java/2006_temp/2006/50661/0a7181933af700ea8025a4197f3a5ebcc08333c3/ReflectionCallbackMethod.java/clean/org/jruby/core/ReflectionCallbackMethod.java |
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