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0.403462
2e0dcd4ded724856ad4107986499260c
Confocal imaging of S. cerevisiae incubated with PHMB. S. cerevisiae were treated with PHMB-rhodamine (4 µg/ml) for 4 h at room temp. Cells were counterstained with DAPI and Con A-Alexa Fluor 488 and imaged by confocal microscopy. Top panels: Confocal images before (left) and after (right) image processing by SRRF. Bottom-left panel: Cross-sectional view of confocal Z-stacks of S. cerevisiae (59 slices). Images show PHMB-rhodamine accumulation within the cytosol and co-localisation with the nucleus (DAPI). The graph confirms high intracellular accumulation of PHMB-rhodamine.
PMC9935507
41598_2023_29756_Fig6_HTML.jpg
0.416896
0159fb3812b345f5ac4aa8ed0f3dcfb4
Confocal imaging of C. albicans incubated with PHMB. C. albicans were treated with PHMB-rhodamine (4 µg/ml) for 4 h at room temp. Cells were counterstained with DAPI and Con A-Alexa Fluor 488 and imaged by confocal microscopy. Top panels: Confocal images before (left) and after (right) image processing by SRRF. Bottom-left panel: Cross-sectional view of confocal Z-stacks of C. albicans (35 slices). Images show PHMB-rhodamine accumulation within the cytosol and co-localisation with the nucleus (DAPI). The graph confirms high intracellular accumulation of PHMB-rhodamine.
PMC9935507
41598_2023_29756_Fig7_HTML.jpg
0.44371
1b161bd0ebe84805a29aed1f3c868358
Schematic of varying susceptibilities of yeasts and filamentous fungi to PHMB. (A) Yeast cells are more susceptible to PHMB attack as the cell wall is anionic, enabling for the polymer’s adhesion. In addition, during budding, the β-(1,3)-glucan and chitin matrix are exposed which could facilitate PHMB cell entry. (B) Filamentous fungi appear to be less susceptible to PHMB attack due to the presence of the extracellular matrix (ECM). The ECM confers biofilm like protection to “mop up” PHMB by binding the polymer effectively; reducing its local concentration at the fungal cell membrane. PHMB penetration and hyphae/conidiophore accessibility. However, α-1,3 in the cell walls is exposed during conidia germination which increases the negative charge of conidia, thus increasing the cidal activity of cationic PHMB.
PMC9935507
41598_2023_29756_Fig8_HTML.jpg
0.445494
75c18c2f421e468f8a44dfa2b7524566
Flow diagram of study population selection.
PMC9935691
fnut-10-1081896-g0001.jpg
0.405714
50c744f0af824432aac5a3401d2727aa
The non-linear associations between serum 25(OH)D concentrations and height growth velocity by sex, age, weight, and sexual maturity status. (A–D) Show the results stratified by sex, age, weight status, and sexual maturity status, respectively. The models are adjusted for age, sex (except for stratified analysis), family income, smoking, drinking, bean-curd or dairy products, aquatic foods, fruits and vegetables, meat products, term birth, birth weight, exclusive breastfeeding, usage of vitamin D / calcium supplements in baseline and follow-up, physical activity, serum calcium, BMI, parents' height, sexual maturity (except for stratified analysis), and baseline height.
PMC9935691
fnut-10-1081896-g0002.jpg
0.484872
e43fedc5d32a413d8f3014a87817cbc3
The non-linear associations between serum 25(OH)D concentrations and height growth velocity Z-score by sex, age weight, and sexual maturity status. (A–D) Show the results stratified by sex, age, weight status, and sexual maturity status, respectively. The models are adjusted for age, sex (except for stratified analysis), family income, smoking, drinking, bean-curd or dairy products, aquatic foods, fruits and vegetables, meat products, term birth, birth weight, exclusive breastfeeding, usage of vitamin D / calcium supplements in baseline and follow-up, physical activity, serum calcium, BMI, parents' height, sexual maturity (except for stratified analysis), and baseline height.
PMC9935691
fnut-10-1081896-g0003.jpg
0.392911
f96faac123c04350af2b09b5d05d8a0a
The estimated marginal mean of height growth velocity in different vitamin D status groups by sex, age, weight, and sexual maturity status. *0.01 ≤ P < 0.05; **0.001 ≤ P < 0.01; ***P < 0.001; NS, not significant. The models are adjusted for age, sex (except for stratified analysis), family income, smoking, drinking, bean-curd or dairy products, aquatic foods, fruits and vegetables, meat products, term birth, birth weight, exclusive breastfeeding, usage of vitamin D / calcium supplements in baseline and follow-up, physical activity, serum calcium, BMI, parents' height, sexual maturity (except for stratified analysis), and baseline height.
PMC9935691
fnut-10-1081896-g0004.jpg
0.448856
92662f5ab81341d79f61edb439b61ade
The estimated marginal mean of height growth velocity in different vitamin D status groups by sex across the weight status. *0.01 ≤ P < 0.05; **0.001 ≤ P < 0.01; ***P < 0.001; NS, not significant. (A, B) stand for boys and girls, respectively. The models are adjusted for age, family income, smoking, drinking, bean-curd or dairy products, aquatic foods, fruits and vegetables, meat products, term birth, birth weight, exclusive breastfeeding, usage of vitamin D / calcium supplements in baseline and follow-up, physical activity, serum calcium, BMI, parents' height, sexual maturity (except for stratified analysis), and baseline height.
PMC9935691
fnut-10-1081896-g0005.jpg
0.460643
c1c114ac91c34eadbfdb951d391429e1
The non-linear associations of serum 25(OH)D concentrations with the incidence of low bone mineral density by sex, age, weight, and sexual maturity status. (A–D) Show the results stratified by sex, age, weight status, and sexual maturity status, respectively. The models are adjusted for age, sex (except for stratified analysis), family income, smoking, drinking, bean-curd or dairy products, aquatic foods, fruits and vegetables, meat products, term birth, birth weight, exclusive breastfeeding, usage of vitamin D / calcium supplements in baseline and follow-up, physical activity, serum calcium, BMI, parents' height, sexual maturity (except for stratified analysis), and baseline calcaneal speed of sound.
PMC9935691
fnut-10-1081896-g0006.jpg
0.464954
a40556bceddd4867ba7fec2d1c4f8d4d
Effect of different amounts of nitrogen fertilization on the total phenolic (A), flavonoids (B), β-sitosterol (C), stigmasterol (D), DPPH (E), and OH (F) content of brown rice (lowercase represent differences between groups, P < 0.05).
PMC9936061
fnut-10-1071874-g001.jpg
0.386729
3e0598effc7d40cfbec9b2807876f16a
Effect of different amounts of nitrogen fertilization on phenolic composition of brown rice.
PMC9936061
fnut-10-1071874-g002.jpg
0.463632
0e1c605b0f4047b089d0b8867921ef92
The status of m6A modification on PRV transcripts. For PRV (MOI = 1) infection, total RNA of PK15 cells was harvested at 24 hpi. (A) Distribution pattern of m6A peaks on PRV transcripts was analyzed based on the MeRIP-seq data (NCBI #GSE209949). (B) Density of m6A peaks on PRV transcripts. (C) Transcriptome-wide mapping to PRV m6A IP reads, input reads and m6A peaks based on MeRIP-seq. The m6A peaks of PRV transcripts were indicated as blue blocks. The input and PRV IP coverage were indicated with green and red bars, respectively. All genes were shown and overlaid as black arrows in the bottom track. (D) Motif analysis to identify consensus sequences for PRV transcripts. The most prominent motif was shown.
PMC9936159
fmicb-14-1087484-g001.jpg
0.463151
a4c16021e3494679979947eebcfcc6dd
PRV infection affected m6A level and expression of m6A regulators in PK15 cells. (A) Total RNA was extracted from PRV-infected and uninfected PK15 cells at different time periods, and the m6A level of RNA was quantified by ELISA. (B) PK15 cells were infected with PRV for 12 and 24 h. m6A regulators were assessed by immunoblotting analysis. β-actin was used as a loading control. (C) RT-qPCR analysis was used to evaluate the mRNA levels of m6A regulators at different times of PRV infection. *p < 0.05, **p < 0.01, ***p < 0.001.
PMC9936159
fmicb-14-1087484-g002.jpg
0.470217
1aefed6fc9e242aeb2520c05d304b53a
PRV infection influenced m6A methylome of PK15 cell transcripts. (A) MeRIP-seq of PK15 cells which were infected by PRV (or uninfected as a negative control, i.e., “Mock”) for 24 h. Density of m6A peaks on PRV-infected and uninfected cellular transcripts. The m6A peaks information was included in our MeRIP-seq data (NCBI #GSE209949). (B) Distribution pattern of m6A peaks on PRV-infected (right) and uninfected (left) cellular transcripts. (C) Volcanic map of m6A peaks (left was downregulated, right was upregulated by PRV infection). There were 1,286 significantly down-regulated m6A peaks, and 260 significantly up-regulated m6A peaks induced by PRV infection. (D) GO enrichment analysis of pathways enriched in the hypomethylated (left) and hypermethylated (right) genes (The top 30 enriched pathways are shown.). (E) KEGG analysis of pathways enriched in the hypomethylated genes (left, the top 20 enriched pathways are shown.) and the hypermethylated genes (right, the top 10 enriched pathways are shown.). (F) Motif analysis to identify consensus sequences for PRV-infected (right) and uninfected (left) PK15 cells transcripts. The most prominent motif for each was shown.
PMC9936159
fmicb-14-1087484-g003.jpg
0.452841
74a5abeab89d4b3ead7ffc407a378802
Depletion of methyltransferases METTL3 and METTL14 suppressed PRV replication. (A) PK15 cells were transfected with the specified siRNAs (60 nM) for 24 h. METTL3 and METTL14 were assessed by immunoblotting analysis. β-actin was used as a loading control. (B) PK15 cells were transfected with the specified siRNAs and were mock transfected (MT) with transfection reagent alone for 24 h. PK15 cells were infected with PRV-FJ01 (MOI = 0.1) for 12 and 24 h. PRV DNA copies were evaluated by RT-qPCR analysis. (C) PK15 cells were transfected with the specified siRNAs and were mock transfected (MT) with transfection reagent alone for 24 h. PK15 cells were infected with PRV-FJ01 (MOI = 0.1) for 24 h. PRV titers were assessed by TCID50 analysis. (D) PK15 cells were transfected with the indicated siRNAs and were mock transfected (MT) with transfection reagent alone for 24 h. PK15 cells were infected with PRV-FJ01 (MOI = 0.1) for 24 h. PRV gE was assessed by immunoblotting analysis. β-actin was used as a loading control. *p < 0.05, **p < 0.01, ***p < 0.001.
PMC9936159
fmicb-14-1087484-g004.jpg
0.436848
aa514f8f3e06472185f65d2ebb6f292f
Overexpression of METTL14 promoted PRV proliferation. (A) PK15 cells were transfected with pEGFP-C3 and pEGFP-C3-METTL14 (2.5 μg) for 6 h, and then cultured with fresh maintenance medium for 24 h. METTL14 was assessed by immunoblotting analysis. β-actin was used as a loading control. (B) PK15 cells were transfected with pEGFP-C3 and pEGFP-C3-METTL14 (2.5 μg) for 6 h, and then cultured with fresh maintenance medium for 24 h. PK15 cells were infected with PRV-FJ01 (MOI = 0.1) for 12 and 24 h. PRV DNA copies were evaluated by RT-qPCR analysis. (C) PK15 cells were transfected with pEGFP-C3 and pEGFP-C3-METTL14 (2.5 μg) for 6 h, and then cultured with fresh maintenance medium for 24 h. PK15 cells were infected with PRV-FJ01 (MOI = 0.1) for 24 h. PRV titers were assessed by TCID50 analysis. (D) PK15 cells were transfected with pEGFP-C3 and pEGFP-C3-METTL14 (2.5 μg) for 6 h, and then cultured with fresh maintenance medium for 24 h. PK15 cells were infected with PRV-FJ01 (MOI = 0.1) for 24 h. PRV gE was assessed by immunoblotting analysis. β-Actin was used as a loading control. *p < 0.05, **p < 0.01.
PMC9936159
fmicb-14-1087484-g005.jpg
0.422455
52c0aa5a7dc44b0ba5c94efeb636a975
Demethylase FTO and ALKBH5 promoted PRV proliferation. (A) PK15 cells were transfected with the specified siRNAs (60 nM) for 24 h. FTO and ALKBH5 were assessed by immunoblotting analysis. β-actin was used as a loading control. (B) PK15 cells were transfected with the specified siRNAs and were mock transfected (MT) with transfection reagent alone for 24 h. PK15 cells were infected with PRV-FJ01 (MOI = 0.1) for 12 and 24 h. PRV DNA copies were evaluated by RT-qPCR analysis. (C) PK15 cells were transfected with the indicated siRNAs and were mock transfected (MT) with transfection reagent alone for 24 h. PK15 cells were infected with PRV-FJ01 (MOI = 0.1) for 24 h. PRV titers were assessed by TCID50 analysis. (D) PK15 cells were transfected with the indicated siRNAs and were mock transfected (MT) with transfection reagent alone for 24 h. PK15 cells were infected with PRV-FJ01 (MOI = 0.1) for 24 h. PRV gE was assessed by immunoblotting analysis. β-actin was used as a loading control. *p < 0.05, **p < 0.01, ***p < 0.001.
PMC9936159
fmicb-14-1087484-g006.jpg
0.408504
a52afed66aa74fdab7123bcca6afe568
Specific recognition protein YTHDF2 and YTHDF3 inhibited PRV proliferation. (A) PK15 cells were transfected with the specified siRNAs (60 nM) for 24 h. YTHDF1, YTHDF2 and YTHDF3 were assessed by immunoblotting analysis. β-actin was used as a loading control. (B) PK15 cells were transfected with the specified siRNAs and were mock transfected (MT) with transfection reagent alone for 24 h. PK15 cells were infected with PRV-FJ01 (MOI = 0.1) for 12 and 24 h. PRV DNA copies were evaluated by RT-qPCR analysis. (C) PK15 cells were transfected with the indicated siRNAs and were mock transfected (MT) with transfection reagent alone for 24 h. PK15 cells were infected with PRV-FJ01 (MOI = 0.1) for 24 h. PRV titers were assessed by TCID50 analysis. (D) PK15 cells were transfected with the specified siRNAs and were mock transfected (MT) with transfection reagent alone for 24 h. PK15 cells were infected with PRV-FJ01 (MOI = 0.1) for 24 h. PRV gE was assessed by immunoblotting analysis. β-actin was used as a loading control. *p < 0.05, **p < 0.01.
PMC9936159
fmicb-14-1087484-g007.jpg
0.434264
d1e9dc4f646442ce8c34ffc192a1fad0
Inhibition of PRV infection by methylation inhibitor 3-deazaadenosine (3-DAA). (A) PK15 cells were treated with the specified concentrations of 3-DAA for 24 h. m6A level quantification was performed by ELISA assays. (B) PK15 cells were treated with the specified concentrations of 3-DAA for 24 h. PK15 cells were infected with PRV-FJ01 (MOI = 0.01) for 24 h, and images of cytopathic effects were recorded (200×). (C) PK15 cells were treated with the specified concentrations of 3-DAA for 24 h. PK15 cells were infected with PRV-FJ01 (MOI = 0.01) for 24 h. PRV DNA copies were evaluated by RT-qPCR analysis. (D) PK15 cells were treated with the specified concentrations of 3-DAA for 24 h. PK15 cells were infected with PRV-FJ01 (MOI = 0.01) for 24 h. PRV titers were assessed by TCID50 analysis. (E) PK15 cells were treated with the specified concentrations of 3-DAA for 24 h. PK15 cells were infected with PRV-FJ01 (MOI = 0.01) for 24 h. PRV gE was assessed by immunoblotting analysis. β-actin was used as a loading control. *p < 0.05, **p < 0.01, ***p < 0.001.
PMC9936159
fmicb-14-1087484-g008.jpg
0.502147
9f4284b8723b43fd84ee0cdb5b0c462e
Schematic representation of m6A regulation of PRV replication. Upon viral infection, virions first attach to the host cell surface, subsequently enter the cell, and finally the viral genome is released into the host cell nucleus. In the nucleus, the methyltransferases METTL3/14 co-induce the methylation of multiple viral mRNAs, whereas the demethylases FTO and ALKBH5 regulate the demethylation process. The methylation of viral mRNA promotes its own nuclear export. In the cytoplasm, YTHDF1 and YTHDF3 synergistically promote mRNA stability and translation, and YTHDF3 cooperates with YTHDF2 to promote mRNA degradation. Ultimately, the expression of PRV proteins is promoted by the cooperation of YTHDF1/2/3, and these products are transported back into the nucleus, where they complete the viral nucleocapsid assembly and eventually release more viral particles.
PMC9936159
fmicb-14-1087484-g009.jpg
0.517038
d4c392aa624643c78db2536822e812ca
Rate of decline in FVC (mL/year) over 52 weeks (A) in all subjects and in subjects with risk factors for rapid decline in FVC at baseline and (B) in all subjects and in subjects with dcSSc and risk factors for rapid decline in FVC at baseline in the SENSCIS trial. *C reactive protein ≥6 mg/L and/or platelets ≥330×109/L. dcSSc, diffuse cutaneous systemic sclerosis; FVC, forced vital capacity; mRSS, modified Rodnan skin score.
PMC9936273
rmdopen-2022-002859f01.jpg
0.422879
4158dd78c7d445208ff27de55e1d1dc2
Timeline showing ferroptosis-related key discoveries.
PMC9936329
fcell-11-1112751-g001.jpg
0.46286
97924ac6580f41dfbe25233892592df7
A schematic illustration showing the main mechanisms of the ferroptosis process. The green arrows represent three antioxidant systems: Xc-GSH-GPX4 pathway, FSP1-CoQ10-NAD(P)H pathway, and GCH1-BH4 pathway. Iron metabolism disturbance and polyunsaturated fatty acids (PUFA) peroxidation, marked with red arrows, significantly contribute to cellular ferroptosis.
PMC9936329
fcell-11-1112751-g002.jpg
0.423985
2e996a1722ec4885ac4c77ba725ae392
Schematic representation of ferroptosis-associated biomarkers in four different musculoskeletal diseases. The profiles of ferroptosis-related molecules have been proven to be well‐established mediators affecting musculoskeletal disease progression and therapeutic response. The organic hallmarks present the biological functions of musculoskeletal diseases, including inflammation, cell death, cell migration, treatment resistance, etc.
PMC9936329
fcell-11-1112751-g003.jpg
0.434607
306cf93d28b44248aa439032f95b957f
Proportion of times that children selected the Canadian English speaker in Accent Group A (Canadian English vs. British English and Canadian English vs. Dutch-accented English) and Accent Group B (Canadian English vs. Australian English and Canadian English vs. French-accented English). Higher bars indicate a stronger “preference” to select the Canadian speaker. The red line indicates chance performance and error bars represent 95% confidence intervals.**p < .01.
PMC9936436
10.1177_17470218221094312-fig1.jpg
0.452026
db2edc77e68d4dac9c410120bfafb5fe
Mean teacher ratings for each pair of teachers on a 5-point rating scale from 1 (very bad) to 5 (very good). Error bars represent 95% confidence intervals.
PMC9936436
10.1177_17470218221094312-fig2.jpg
0.450087
3b24b5b2daf344c58c814a7f40ed8197
Mean teacher ratings for male and female teachers by male and female participants on a 5-point rating scale from 1 (very bad) to 5 (very good). Error bars represent 95% confidence intervals.
PMC9936436
10.1177_17470218221094312-fig3.jpg
0.494485
bf17ec8b990a4dcaa9659df0cf2e17bb
Identification of molecular subtypes based on oxidative stress- (OS-) related genes. (a) Forest plot of prognostic significant OS-related genes. (b) GSE39582 cohort sample cumulative distribution function (CDF) curve. (c) GSE39582 cohort sample CDF delta area curve; delta area curve of consensus clustering, indicating the relative change in area under the cumulative distribution function (CDF) curve for each category number k compared with k–1. The horizontal axis represents the category number k, and the vertical axis represents the relative change in area under CDF curve. (d) The heat map shows the clustering of samples when k = 4. (e) The Kaplan-Meier curve shows the overall survival prognosis of the four molecular subtypes. (f) The Kaplan-Meier curve shows the relapse-free survival prognosis of the four molecular subtypes. (g) The heat map showing the expression level of OS-related genes in different molecular subtypes of GSE39582. (h) The violin plot showing differences in “oxidative stress ssGSEA scores” between different molecular subtypes in the GSE39582.
PMC9936508
OMCL2023-5385742.001.jpg
0.467339
c1435018a9434b3697ae6138b8c94547
Clinical features among molecular subtypes. (a) Mismatch repair (MMR) status distribution in different clinical features in the GSE39582 cohort. (b) CpG island methylation phenotype (CIMP) status distribution in different clinical features in the GSE39582 cohort. (c) Chromosomal instability (CIN) status distribution in different clinical features in the GSE39582 cohort. (d) Comparative analysis of molecular subtypes in this study and Masiero et al. [24].
PMC9936508
OMCL2023-5385742.002.jpg
0.450458
a4da1d6396614808958795f8cd46b7e0
Immune features among molecular subtypes. (a) Differences in 22 immune cell scores between different molecular subtypes in GSE39582 cohort. (b) Differences in immune infiltration among different molecular subtypes in GSE39582 cohort. (c) Inflammation-related gene cluster score differences between different molecular subtypes in GSE39582 cohort. (d–f) Differences in ferroptosis scores, autophagy scores, and angiogenesis scores between different molecular subtypes, respectively.
PMC9936508
OMCL2023-5385742.003.jpg
0.395903
d929dad4eb274a858f1be2c4e997ccce
Identification of OS-related prognostic genes. (a) Univariate Cox analysis of DEGs and a total of 53 promising candidates were identified. Red means risk, and blue means protective. (b) The trajectory of each promising candidate genes as a function of lambda. (c) Confidence interval for lambda. (d) Distribution of LASSO coefficients for six genes.
PMC9936508
OMCL2023-5385742.004.jpg
0.395355
0feaf70b0d4b4aec9a97ad44a7d24ac4
RiskScore model establishment and effectiveness evaluation. (a) The distribution of RiskScore in the GSE39582 cohort: the top panel shows the RiskScore distribution, the middle panel shows the corresponding survival status of each patient, and the bottom panel shows the expression of six OS-related prognostic genes in each patient. (b) ROC curve was used to evaluate the predictive efficacy of the RiskScore model. (c) The Kaplan-Meier survival analysis showing the distribution of survival for different RiskScore groups. (d–i) ROC curve and the Kaplan-Meier survival analysis of different RiskScore group: (d, e) TCGA-COAD cohort; (f, g) TCGA-READ cohort; (h, i) GSE87211 cohort.
PMC9936508
OMCL2023-5385742.005.jpg
0.502035
8636fa8dc9184d20a56cd1aaefaec8eb
Relationship between RiskScore and immune cell infiltration. (a) Proportion of immune cell components in the GSE39582 cohort. (b) The proportion of immune cell components assessed by ESTIMATE in the GSE39582 cohort. (c) The heat map shows the correlation analysis of 22 immune cells and RiskScore in the GSE39582 cohort. (d) The heat map shows the correlation analysis between signaling pathways and RiskScore in the GSE39582 cohort (r > 0.3). (e) The heat map shows the correlation analysis between RiskScore and inflammatory activities in the GSE39582 cohort. (f) The scatter plot shows the correlation between RiskScore and “oxidative stress ssGSEA scores” in the GSE39582 cohort.
PMC9936508
OMCL2023-5385742.006.jpg
0.484
3fc1075850e549e98dab5208a5251175
The relationship between immunotherapy/chemotherapy and RiskScore. (a) Box plots showing immune checkpoint expression between different RiskScore groups in the GSE39582 cohort. (b) The difference of tumor mutation burden in the high and low groups. (c) TIDE analysis in the high and low group. (d) The box plots showing IC50 for gefitinib, thapsigargin, vinorelbine, 5-fluorouracil, cisplatin, and paclitaxel in GSE39582 cohort.
PMC9936508
OMCL2023-5385742.007.jpg
0.434653
03b399c7d78a48b98678ad07b5d35457
RiskScore incorporates clinicopathological features to further improve prognostic models. (a) Univariate Cox analysis of RiskScore and clinicopathological characteristics. (b) Multivariate Cox analysis of RiskScore and clinicopathological characteristics. (c) Nomogram showing the relationship between RiskScore and clinicopathological characteristics. (d) Calibration curves for 1, 3, and 5 years of nomogram. (e) Decision curve for nomogram.
PMC9936508
OMCL2023-5385742.008.jpg
0.399663
ad055abcc0bb41599a9b1287a23bcc33
Subcellular location of GFP-fused SsBBX13 protein in Nicotiana benthamiana leaf epidermal cells. The SsBBX13-GFP or GFP was transiently co-expressed with the nuclear localization marker NLS-mKATE by Agrobacterium. Images of epidermal cells were captured using green fluorescence, mKATE fluorescence, chlorophyll fluorescence, visible light, and merged light. Confocal laser microscopy scanning was carried out 48 h after dark culture with a Zeiss LSM 800. Scale bars was 20 μm
PMC9936747
12864_2023_9185_Fig1_HTML.jpg
0.479364
1dccd6ae147c467abc26c0c591b49c12
Phylogenetic tree of BBX peptide sequences of S. spontaneum, A. thaliana, O. sativa, S. bicolor, and Z. mays. Sequences were aligned using ClustalW software and the subsequent phylogenetic tree was constructed applying the Neighbor-joining algorithm by MEGA X software, with 1000 bootstrap replicates. Bootstrap values below 70% are not shown. Roman numerals (I–V) represent different gene clusters. The genes from each group are differentiated by color. Black solid triangles are the new BBXs found in Saccharum
PMC9936747
12864_2023_9185_Fig2_HTML.jpg
0.413973
2e0836f5bf7b4c00a27553ba74425c45
Phylogenetic tree (a), conserved domain (b), conserved motifs (c), and exon/intron organization (d) of BBX gene family from S. spontaneum. Protein sequences were aligned by ClustalW and the tree was constructed by MEGA X software using the neighbor-joining method, with 1000 bootstrap replicates. Bootstrap values below 70% are not shown. Black solid triangles are the new BBXs found in Saccharum. The B-box domains and CCT domain are highlighted by green and yellow boxes, respectively. Motifs of each of the SsBBXs, and 10 different motifs, are each denoted by different colored boxes. Exons and introns are represented by yellow boxes and black lines, and untranslated (UTR) 5′ - and 3′ -regions are indicated by green boxes, respectively
PMC9936747
12864_2023_9185_Fig3_HTML.jpg
0.470855
ecf1a8b60ad44bad9d29490f0a7d5cd5
Domain composition of SsBBX proteins. Multiple sequence alignments of the domains of the SsBBXs. Multiple sequence alignments of the B-box 1, B-box 2, and CCT domains are shown. The identical and similar conserved amino acids were represented by black and pink shaded, respectively
PMC9936747
12864_2023_9185_Fig4_HTML.jpg
0.454636
19b0252af6924ce98e7a089abb562bcf
Collinearity relationships of BBX genes from S. spontaneum, O. sativa, S. bicolor, and Z. mays. BBX collinear gene pairs were mapped to their respective locus in their genome in a circular diagram. The chromosomes of S. spontaneum, O. sativa, S. bicolor, and Z. mays are indicated by boxes of different colors with the prefixes ‘Ss’, ‘Os’, ‘Sb’, and ‘Zm’, respectively. The numbers along each chromosome box represent the sequence length of the corresponding chromosome in mega-bases. Lines of different colors represent the duplication pairs of BBX genes
PMC9936747
12864_2023_9185_Fig5_HTML.jpg
0.437164
32ab4b105c0340d58c2735d19a7311cc
Identification of cis-acting elements in all SsBBXs. a Four categories of cis-acting elements in the SsBBXs. Different colors and numbers of the heatmap box represented the number of different elements in these SsBBXs. Red indicates higher elements while blue indicates lower elements. b Histogram of the cis-acting elements in each SsBBX gene. c Pie charts of different sizes indicated the ratio of each promoter element in each category, respectively
PMC9936747
12864_2023_9185_Fig6_HTML.jpg
0.372578
0e449acbf3c94ebb84ab2d3b55abb093
The expression pattern of BBX genes based on log2-transformed FPKM values in three treatments. a Heatmap based on gene expression in different tissues at different stages in S. spontaneum and S. officinarum.b Heatmap based on gene expression across leaf gradients in S. spontaneum and S. officinarum. c&d) Heatmap based on gene expression during the diurnal cycles in S. spontaneum and S. officinarum. The heat map was plotted with the TBtools software (v1.098). Expression values were normalized to genes based on the average linkage algorithm. The scale bar represents the log2 normalized expression. Red indicates higher expression while blue indicates lower expression
PMC9936747
12864_2023_9185_Fig7_HTML.jpg
0.392355
d985f3acd7ba4d7ab74ccf01cc837bf4
The expression pattern of BBX genes in Saccharum hybrid YT55 and YT00–236 under low-nitrogen stress conditions based on log2-transformed FPKM values (a) and verification of BBX1 and BBX13 expressions in root and leaf under low-nitrogen stress by RT-qPCR (b, c, d, and e). YT55 and YT00–236 seedlings were subjected to 100 mM nitrogen treatment, and samples were collected at 0, 6, 12, 24, 48, and 72 h after the treatment. The expression at 0 h was set to 1.0. Values are mean ± SD of three replicates
PMC9936747
12864_2023_9185_Fig8_HTML.jpg
0.437243
48d084294eaf4982913f70a98c3a5f34
Comparative genomics heatmap, amino acid sequence alignment, and phylogenetic tree of sinH sequence.(A) Pathotype, phylogroup, sequence types of distribution of sinH sequence. Heatmap showing nonpathogenic E. coli, ExPECs and InPECs. Columns are organized by pathotypes, and rows are organized first by phylogroups, then by sequence types. Each cell in the heatmap is colored based on percent nucleotide identity compared to the reference used to generate the alignments, and the black boxes indicate there is no sequence type (ST) present for the listed pathotype whereas white boxes indicate there is a sequence type but it does not contain a sinH homolog. (B) MAFFT alignment of the amino acid sequence of SinH. Alignment is annotated with phylogroup and sequence type. An identity histogram is shown at the top, and black represents amino acid differences from the majority consensus. (C) Consensus maximum-likelihood phylogenetic tree of SinH generated from alignment shown in Fig 1B using RAxML and rooted with Salmonella SinH. Branch labels indicate percentage support from 100 rapid bootstrap replicates. The consensus tree and alignment were annotated in BioRender.
PMC9937491
ppat.1011082.g001.jpg
0.430094
c3c6b69478d54d21b60474fbcdcd7a4c
Structural alignment of predicted full-length SinH and expression and purification of SinH-based candidate antigens.Structural alignments were generated by Pairwise Structure Alignment webserver, and aligned structures were visualized using ChimeraX and annotated with BioRender. (A) Predicted structure of full-length SinH protein (excluding disordered residues 1 through 101) with four distinct domains (Translocation β-barrel transmembrane domain: purple, Ig-like domain-1: green, Ig-like domain-2: red, Ig-like domain-3 (Receptor binding domain): blue). (B) Alignment between transmembrane β-barrel domains of predicted SinH protein structure (blue) and transmembrane domains of Y. pseudotuberculosis invasin (PDB: 4E1T) (red, left) and EHEC intimin (PDB: 4E1S) (red, right). (C) Alignment between domain-1 of SinH (blue) and domain-3 of Y. pseudotuberculosis invasin (red). (D) Alignment between domain-2 of SinH (blue) and domain-3 of Y. pseudotuberculosis invasin (red). (E) Alignment between the receptor-binding domain (RBD) of SinH (blue) and Ig-like domain-1 of EHEC intimin (red, left) and Ig-like domain-4 of Y. pseudotuberculosis invasin (red, right). (F) Genes encoding SinH-based antigens (Ig-like domain-1,2,3 or Ig-like domain-3) were cloned from ExPEC ST131 strain JJ1887. SinH-based antigens were recombinantly expressed with a glutathione-S-transferase (GST) tag and purified using immobilized GST-affinity chromatography. Purified antigens were separated and analyzed by SDS-PAGE and stained with Coomassie blue stain buffer. Predicted sizes of tagged proteins are as follows: GST-SinH-3, 40 kDa; GST-SinH-123, 70 kDa. Circle symbols indicate the locations of the GST-SinH Domain-3 and GST-SinH Domain-123, respectively, for each individual gel. The SDS-PAGE were annotated in BioRender.
PMC9937491
ppat.1011082.g002.jpg
0.498055
15da14b5c24f4b99b999842b42aa68a4
Assessment of the protective efficacy and immunogenicity of SinH-based vaccines against ExPEC sequence type 131 (ST131) bacteremia.(A) The vaccination scheme was used in this experiment. BALB/cJ, 6 weeks old, female mice were subcutaneously immunized with SinH-based antigens (SinH-3, SinH-123, N = 15) or GST alone (N = 15) and injected with an intraperitoneal (IP) injection of 5 × 107 CFU of different ExPEC ST131 strains (JJ1886, JJ2547, JJ2050). Organs were harvested and plated to determine bacteria levels. Serum was taken from individual mice after immunization and ExPEC infection. The schematic diagram was made in BioRender. (B) Box-and-whisker plots of the bacterial levels (CFU/ml) in combining the counts from all organs (liver, spleen, kidney) and all ExPEC strains (JJ1886, JJ2547, JJ2050); (C) or the bacterial levels (CFU/ml) of each ExPEC ST131 strain in combining the counts from all organs; (D) or the bacterial levels (CFU/ml) of all ExPEC strains in each type of organ following necropsy. (E) ELISA analysis of sera from SinH-based antigens vaccinated animals using antigens, SinH-3 or SinH-123 (GST-tag removed), as the capture antigen. Error bars indicate the median with 95% confidence interval (CI). Significant was determined by theKruskal-Wallis analysis of variance (ANOVA) with Dunn’s multiple comparisons correction. Symbols represent data of individual mice. One star (*) P < 0.05, two stars (**) P < 0.01, three stars (***) P < 0.001, four stars (****) P < 0.0001. The Box-and-whisker plots were exported from Graphpad Prism 9 and annotated using BioRender.
PMC9937491
ppat.1011082.g003.jpg
0.472169
b11f992f4e0f442d8bb17ae3906b95ba
Assessment of the protective efficacy of SinH-based vaccines reduced the mortality of ExPEC sequence type 131 (ST131) bacteremia.(A) The vaccination scheme was used in this experiment. BALB/cJ, 6 weeks old, female mice were subcutaneously immunized with SinH-based antigens (SinH-3, SinH-123, N = 12), alum-only (N = 8) or LPS-only (N = 8) and injected with an intraperitoneal (IP) injection of 5 × 107 CFU of ExPEC ST131 strain JJ2050. Mice were monitored twice a day for 10 days, and moribund animals were euthanized/necropsied to determine bacterial levels in the kidneys, spleen, and liver. The schematic diagram was made in BioRender. (B) The survival rate of ST131 ExPEC strain JJ2050 was determined using the Gehan-Breslow-Wilcoxon comparison. (C) Box-and-whisker plots of the JJ2050 bacterial levels (CFU/ml) of the SinH-3 vaccinated group and SinH-123 vaccinated group in combining the counts from all organs (liver, spleen, kidney) at 2 d.p.i and 10 d.p.i. Error bars indicate the median with 95% confidence interval (CI). Significant was determined by the Kruskal-Wallis analysis of variance (ANOVA) with Dunn’s multiple comparisons correction. Symbols represent data of individual mice. One star (*) P < 0.05, two stars (**) P < 0.01, three stars (***) P < 0.001, four stars (****) P < 0.0001. The Box-and-whisker plots and Kaplan Meier survival curves were exported from Graphpad Prism 9 and annotated using BioRender.
PMC9937491
ppat.1011082.g004.jpg
0.48629
e747bb97e2054099b065653003eca77d
Assessment of the protective efficacy of SinH-3 against the bacteremia of multiple ExPEC sequence types (STs).(A) Sequence alignment of sinH in different sequence types of ExPEC. The alignment was exported from Geneious and annotated using BioRender. (B) The vaccination scheme was used in this experiment. BALB/cJ, 6 weeks old, unvaccinated female mice (N = 4) and female mice were subcutaneously immunized with SinH-3 (N = 8), were both injected with an intraperitoneal (IP) injection of 5 × 107 CFU of multiple ExPEC sequence type strains (ST73-mixture, ST95-mixture). Mice were monitored twice a day for 5 days, and moribund animals were euthanized/necropsied to determine bacterial levels in the kidneys, spleen, and liver. Organs were harvested and plated to determine bacteria levels. The schematic diagram was made in BioRender. The survival rate curve of (C) ST73-mixture or (D) ST95-mixture was determined using the Gehan-Breslow-Wilcoxon comparison. (E) Box-and-whisker plots of the bacterial levels (CFU/ml) of the counts from all organs following necropsy. Error bars indicate the median with 95% confidence interval (CI). Significant was determined by the Kruskal-Wallis analysis of variance (ANOVA) with Dunn’s multiple comparisons correction. Symbols represent data of individual mice. One star (*) P < 0.05, two stars (**) P < 0.01, three stars (***) P < 0.001, four stars (****) P < 0.0001. The Box-and-whisker plots and Kaplan Meier survival curves were exported from Graphpad Prism 9 and annotated using BioRender.
PMC9937491
ppat.1011082.g005.jpg
0.445604
9e8b36e65b6b4285a5df600dbf30d2ff
Assessment of the protective efficacy and immunogenicity of SinH-based vaccines against acute urinary tract infection (UTI).(A) The vaccination scheme was used in this experiment. BALB/cJ, 6 weeks old, female mice were subcutaneously immunized with SinH-based antigens (SinH-3, SinH-123, N = 8) or GST alone (N = 7 or 8) and inoculated with a transurethral injection of 108 CFU of UPEC strains (UTI89, CFT073). Bladders were harvested and plated to determine bacteria levels. Urine was taken from each mouse after complete immunization. The schematic diagram was made in BioRender. Box-and-whisker plots of the bacterial levels (CFU/ml) in the bladder of UTI89 (B) or CFT073 (C) ELISA analysis of urinary IgG (D) and IgA (E) from SinH-based antigens vaccinated animals using antigens, SinH-3 or SinH-123, as the capture antigen. Error bars indicate the median with 95% confidence interval (CI). Significant was determined by the Kruskal-Wallis analysis of variance (ANOVA) with Dunn’s multiple comparisons correction. Symbols represent data of individual mice. One star (*) P < 0.05, two stars (**) P < 0.01, three stars (***) P < 0.001, four stars (****) P < 0.0001. The Box-and-whisker plots were exported from Graphpad Prism 9 and annotated using BioRender.
PMC9937491
ppat.1011082.g006.jpg
0.466125
8ea4bc60ff334328957a1ef7c5079928
Assessment of the protective efficacy of SinH-based vaccines against ExPEC colonization in the GI tract.(A) The vaccination scheme was used in the murine model of gastrointestinal (GI) tract colonization. BALB/c, 6 weeks old, female mice were subcutaneously immunized with SinH-based antigens (SinH-3, SinH-123, N = 18) or GST alone (N = 18) and inoculated with a gavage of 109 CFU of ExPEC ST131 strains (JJ1886, JJ2547, JJ2050). Feces samples were collected and plated to determine bacteria levels. (B) Box-and-whisker plots of the bacterial levels (CFU/ml) in combining the counts from all ExPEC strains (JJ1886, JJ2547, JJ2050) (C) or the bacterial levels (CFU/ml) of each ExPEC strain in feces. (D) The vaccination scheme was used in the murine model of gastrointestinal (GI) tract colonization in immunosuppressed mice. BALB/c, 6 weeks old, female mice were subcutaneously immunized with SinH-based antigens (SinH-3, SinH-123, N = 18) or GST alone (N = 18) and inoculated with a gavage of 109 CFU of ExPEC ST131 strains (JJ1886, JJ2547, JJ2050). And then, mice were treated with the chemotherapeutic agent Cytoxan (CTX) on alternate days. After three times injections, feces were harvested and plated to determine bacteria levels in immunosuppressed mice. (E) Box-and-whisker plots of the bacterial levels (CFU/ml) in combining the counts from all ExPEC strains (JJ1886, JJ2547, JJ2050) (F) or the bacterial levels (CFU/ml) of each ExPEC strain in immunosuppressed mice feces. Error bars indicate the median with 95% confidence interval (CI). Significant was determined by the Kruskal-Wallis analysis of variance (ANOVA) with Dunn’s multiple comparisons correction. Symbols represent data of individual mice. One star (*) P < 0.05, two stars (**) P < 0.01, three stars (***) P < 0.001, four stars (****) P < 0.0001. The schematic diagrams were made in BioRender. The Box-and-whisker plots were exported from Graphpad Prism 9 and annotated using BioRender.
PMC9937491
ppat.1011082.g007.jpg
0.448965
a275e5cff382471981fac105eabdf2fe
Potential phytochemical classes and secondary metabolites discussed for COVID-19 infection.
PMC9937517
10541_2023_2427_Fig1_HTML.jpg
0.421029
2c65531b9d7249f9adf2e86d8417c737
Structures of potential terpenoid compounds effective against COVID-19.
PMC9937517
10541_2023_2427_Fig2_HTML.jpg
0.454713
bc58b19938d841f5ad375e1448b5400f
Structures of alkaloids potential for COVID-19.
PMC9937517
10541_2023_2427_Fig3_HTML.jpg
0.430741
8ebc4e136348469eb25d405486e69a46
Structures of phenolic phytochemicals potential for COVID-19.
PMC9937517
10541_2023_2427_Fig4_HTML.jpg
0.515266
d3fc4664e5544c4ca48ccd04247bda14
Overview of potential high-value phytochemicals effective for COVID-19.
PMC9937517
10541_2023_2427_Fig5_HTML.jpg
0.49212
db1b8372f00c469e9511ccccddcad977
Reaction scheme showing photo-degradation of methionine in the presence of riboflavin to produce volatile sulfur compounds, among other products (adapted with permission from refs (25) (copyright 2019 Elsevier) and (35) (copyright 2020 American Chemical Society)).
PMC9937536
jf2c05275_0002.jpg
0.46142
81e5151c15de469d8ef69cb911749ba6
Results from photo-degradation trials carried out in model wine solution showing (A) PLS regression model performance (R2) and associated regression coefficients for (B) dimethyl disulfide (DMDS) concentration, (C) sum of VSCs, (D) methionine disappearance (Met lost), (E) molar ratio of sulfur compound formed/Met degraded, and (F) cabbage sensory score.
PMC9937536
jf2c05275_0003.jpg
0.413326
eb54bbb230cb4817ae4769289d89bb6d
Results from photo-degradation trials carried out in model wine solution showing the contour plots for the interaction between oxygen and copper for (A) sum of VSCs and (B) cabbage sensory score.
PMC9937536
jf2c05275_0004.jpg
0.527176
948411e8267e4bc2888f3efce3bf3e9f
Results from photo-degradation trials carried out in model wine solution added with caffeic acid showing (A) PLS regression model performance (R2) and associated regression coefficients for (B) free methanethiol (MeSH) concentration and (C) sum of VSCs.
PMC9937536
jf2c05275_0005.jpg
0.48384
6bbdea6af36343ae9caa9a7f631f17af
Results from photo-degradation trials carried out in model wine solution added with caffeic acid showing the contour plots for the interaction between oxygen and iron for free methanethiol concentration.
PMC9937536
jf2c05275_0006.jpg
0.518486
3f94cbd29bbe4d179f8e8cb7efa928a8
Results from photo-degradation trials carried out in model wine solution added with catechin showing (A) PLS regression model performance (R2) and associated regression coefficients for (B) free methanethiol (MeSH) concentration and (C) cabbage sensory score.
PMC9937536
jf2c05275_0007.jpg
0.425196
76775f087b3947548a3fb2bf4516d30f
Results from photo-degradation trials carried out in model wine solution added with catechin showing the contour plots for the interaction between oxygen and copper for (A) free methanethiol and (B) cabbage sensory score.
PMC9937536
jf2c05275_0008.jpg
0.543965
ce8ea528eb03485b8bffc95746015af0
Workflow for estimating and forecasting cases and hospitalizations by Wisconsin HERC region
PMC9937741
12889_2023_15160_Fig1_HTML.jpg
0.470099
a612cf9b76ab43feb5e15f4e7e1c4826
Geofacet of time series data for estimated and forecasted cases. Geofacet of time series data for estimated and forecasted cases by Wisconsin HERC region generated from September 20, 2020 to December 6, 2020
PMC9937741
12889_2023_15160_Fig2_HTML.jpg
0.476861
4ea2dbbb0ca240988cc8e4e553f2bda5
Geofacet of time series data for estimated and forecasted effective \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$R_t$$\end{document}Rt. Geofacet of time series data for estimated and forecasted effective \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$R_t$$\end{document}Rt by Wisconsin HERC region generated from September 20, 2020 to December 6, 2020
PMC9937741
12889_2023_15160_Fig3_HTML.jpg
0.475339
9d7d75614ef248828f1a210937b918d7
Geofacet of time series data for estimated and forecasted hopitalizations. Geofacet of time series data for estimated and forecasted hopitalizations by Wisconsin HERC region generated from September 20, 2020 to December 6, 2020
PMC9937741
12889_2023_15160_Fig4_HTML.jpg
0.548593
a2024aeaaba2408686305fbe71c21980
Coverage probability of time series data for estimated and forecasted cases, effective \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$R_t$$\end{document}Rt, and hopitalizations. Coverage probability of time series data for estimated and forecasted cases, effective \documentclass[12pt]{minimal} \usepackage{amsmath} \usepackage{wasysym} \usepackage{amsfonts} \usepackage{amssymb} \usepackage{amsbsy} \usepackage{mathrsfs} \usepackage{upgreek} \setlength{\oddsidemargin}{-69pt} \begin{document}$$R_t$$\end{document}Rt, and hopitalizations by Wisconsin HERC region generated from September 20, 2020 to December 6, 2020
PMC9937741
12889_2023_15160_Fig5_HTML.jpg
0.484212
30537e7fe4964d30a223686b071eb540
Characteristics of TK1-IgY-pAb. A. Example of a patient with RC (T1N2M0). a Western blot of STK1p. The serum samples, presurgery (Lines 1 and 2, duplicate), and 6 months after surgery (Line 3); Serum sample from a disease-free person (Lines 4 and 5, duplicate). b) TK1 immunohistochemistry (IHC) staining of RC tissue postsurgery (T1N2M0). Brownish-yellow TK1 was mainly in the cytoplasm. Blue staining was used to counterstain nuclei with hematoxylin. Magnification 200 × . B. Receiver operation characteristic (ROC) analysis. The analysis was based on STK1p values of 488 CRC patients and 488 tumor-free persons
PMC9938097
12672_2023_614_Fig1_HTML.jpg
0.45739
9dad2bfe82d44f2480fefd2de4b61bd7
Overall survival (OS) rate of CRC patients related to STKIp, CEA and CA19.9 (A–C) and the OS rate related to PTL of CRC (D) based on the Kaplan–Meier plotter database. The solid dots in the survival curves show the times of censored observations. M: months
PMC9938097
12672_2023_614_Fig2_HTML.jpg
0.407469
ce4acd36bd714af4bd6fd10463b3b021
Overall survival (OS) curves of R-CC (A), L-CC (B) and RC (C) related to STK1p, CEA, CA19.9, and TNM stage based on the Kaplan–Meier plotter database. The solid dots in the survival curves show the times of censored observations. M: months
PMC9938097
12672_2023_614_Fig3a_HTML.jpg
0.41899
41ae45c0f13e47b885a385a286bf99c3
Correlation between serum values of STK1p, CEA and CA19.9 in R-CC (A), L-CC (B) and RC (C) patients. r = Pearson correlation coefficient
PMC9938097
12672_2023_614_Fig4_HTML.jpg
0.410629
79a87638e89243c8846c06fab4316784
Schematic diagram of the detection of early colorectal tumorigenesis based on STK1p combined with appropriate imaging. ROS✸: Reactive oxygen species from metabolism, inflammation, radiation, pollution, etc.; *Elevated STK1p: the STK1p value significantly increased (P < 0.0001) in the following manner: healthy mucosa (tumor-free) < enlarged polyps < dysplasia < colorectal carcinoma (CRC, TNM stage I-III) [28]. The text is explained in reference no 30
PMC9938097
12672_2023_614_Fig5_HTML.jpg
0.493573
7e8538c7ec2147ce8c620409dae5c736
Summary of the potential roles of neutrophils in non-tuberculous mycobacterial lung disease. The figure is made with BioRender (https://app.biorender.com/). Abbreviations: ROS: Reactive oxygen species; NET neutrophil extracellular trap
PMC9938600
12941_2023_562_Fig1_HTML.jpg
0.488724
634c628c1d344c4e8e04c04e127852fb
Рисунок 1. График роста пациента Е.Примечание к рисунку: по вертикали — рост, см; по горизонтали — возраст, годы; измерения роста в соответствии с хронологическим (красные точки) и костным (желтые точки) возрастом.Figure 1. Growth chart of patient E.
PMC9939971
problendo-68-13149-g001.jpg
0.476204
e0bfd8e7eee447eda0e80ba4aac8dee5
Рисунок 2. Результаты 5-дневного непрерывного мониторинга гликемии пациента Е.Примечание к рисунку: 200 мг/дл = 11,1 ммоль/л, 140 мг/дл = 7,8 ммоль/л, 70 мг/дл = 3,9 ммоль/л, 40 мг/дл = 2,2 ммоль/л.Figure 2. Results of 5-day continuous monitoring of glycemia of patient E.
PMC9939971
problendo-68-13149-g002.jpg
0.504877
7ec0569b6c8b4738b05ba1eb5268f6c7
Рисунок 3. График роста пациентки А.Примечание к рисунку: по вертикали — рост, см; по горизонтали — возраст, годы; измерения роста в соответствии с хронологическим (красные точки) и костным (желтые точки) возрастом.Figure 3. Growth chart of patient A.
PMC9939971
problendo-68-13149-g003.jpg
0.419807
1c1101b4055f4a9aa768f4372fd9755c
Рисунок 4. Результаты 5-дневного непрерывного мониторинга гликемии пациентки А.Примечание к рисунку: 140 мг/дл = 7,8 ммоль/л, 80 мг/дл = 4,5 ммоль/л.Figure 4. Results of 5-day continuous glycemic monitoring of patient A.
PMC9939971
problendo-68-13149-g004.jpg
0.538549
72acbe06edf84e8a9c4ff4cac7e3f3cb
Summary of the approach ‘Map-then-assemble’ implemented in FrangiPANe. Raw pair-ended short reads are mapped to the reference genome, separately for each sample, and unmapped reads are assembled. Next, contigs from all individuals are pooled and clustered to reduce redundancy. Non-redundant contigs are finally anchored on the genome.
PMC9940456
lqad013fig1.jpg
0.427703
937c6569c2a64f899eb21829a9872fc9
Contigs location on the 12 chromosomes of CG14. A total of 152 411 sequences were uniquely anchored, representing 31.5% of the total number of contigs.
PMC9940456
lqad013fig2.jpg
0.470862
18070246bcc44fa2bcae9381588fed49
Mobility trends in Austria. The black lines represent average mobility changes relative to the baseline (Mar. 23–29, 2020). The gray area indicates the COVID-19 stringency index [0–100] (containment and closure policies) for Austria (Hale et al. 2021).
PMC9940778
nfac042f1.jpg
0.473024
a3de7a446fde4d4fb02266ed39859675
Correlation of mobility estimates (averages by subgroup and week). P values refer to two-sided tests for statistical significance.
PMC9940778
nfac042f2.jpg
0.503825
d8e51de179ea4ab1a82ed2f534f6a972
Correlation of mobility estimates (averages by category and week). P values refer to two-sided tests for statistical significance.
PMC9940778
nfac042f3.jpg
0.42836
8c0571999d7f463580175f32d8a86e66
Intraoperative image and diagram demonstrating en bloc resection of segment 4a + 5 and PD. (A) Kocher's maneuver was applied to the lift head of the pancreas and the duodenum, and a biopsy of the periaortic lymph node was routinely performed. (B) PD: after transecting the gastric antrum, the pancreas, and the jejunum, the small blood vessels between the uncinate process and the SMA were separated and ligated until its root. The red solid line indicates the transection of the gastric antrum. The yellow dotted line indicates the transection of the pancreas at the neck. (C) Resection of segment 4a + 5. (D) After the completion of segment 4a + 5 resection and PD. CHA: Common hepatic artery; CHD: Common hepatic duct; IVC: Inferior vena cava; LRV: Left renal vein; PD: Pancreatoduo-denectomy; PV: Portal vein; SMA: Superior mesenteric artery.
PMC9943980
cm9-135-2851-g001.jpg
0.436459
4cf61cb952a24e6c9b933113bb25b79e
(A) Kaplan–Meier analysis showed a significant difference in OS between the GBC group and the cholangiocarcinoma group (P < 0.001). (B) Kaplan–Meier analysis showed a significant difference in GBC patients with or without prognostic factors (P < 0.001, HR, 95% CI [3.431, 1.853–6.355]). CI: Confidence interval; GBC: Gallbladder cancer; OS: Overall survival.
PMC9943980
cm9-135-2851-g002.jpg
0.437356
de00869a13d54c1d91bc98aaf8b77006
Kaplan–Meier analysis showed the overall median survival in the HPD-GBC and None-HPD-GBC groups was 11 months and 12.12 months, respectively (P > 0.05).
PMC9943980
cm9-135-2851-g003.jpg
0.444046
e6d65ef1050248e597cf85ce22acbae6
The flow diagram of the screening process. SDOH, Social Determinants of Health.
PMC9944244
HSR2-6-e1124-g001.jpg
0.425215
ecd6b3953ce1425eaa39193186ce7321
(A) Subtle erythematous rash on the forearm in a linear pattern. (B) Histopathologic examination of the skin punch biopsy reveals a sparse interstitial inflammatory cell infiltrate. Hematoxylin and eosin, (H&E) ×40. (C) Loss of the fat around eccrine glands, mild thickening of the collagen bundles, and a mild lymphocytic inflammatory cell infiltrate with plasma cells (H&E) ×200. (D) CD34 expression is reduced in the lower reticular dermis in a geographical pattern (as demarcated by the blue line) ×40.
PMC9944576
dermatopathology-10-00010-g001.jpg
0.434541
2526864228c64c9090759dc3a7551b1c
(A) Scanning magnification of this punch biopsy with hyperkeratosis, follicular plugging, and hyalinization of collagen in the superficial dermis (H&E) ×40. (B) Higher magnification shows an interstitial inflammatory cell infiltrate composed predominantly of lymphocytes (H&E) ×100. (C) Plasma cell also seen in the infiltrate (H&E) ×200 (D) There is diffuse loss of CD34 expression throughout the dermis (as demarcated by the blue line) ×40.
PMC9944576
dermatopathology-10-00010-g002.jpg
0.419597
5e3650389bc048be9f804ea463d129f7
(A) Hyperpigmented area seen in the left upper inner arm. (B) Histopathologic examination shows hyperkeratosis and acanthosis with diffuse thickening of the superficial and deep dermis with loss of adnexal structures. (H&E) ×40. (C) Thickening of the collagen bundles with hyalinization is present with a mild interstitial cell infiltrate composed of lymphocytes and plasma cells (H&E) ×400. (D) CD34 expression is diffusely absent in the dermis (as demarcated by the blue line) ×40.
PMC9944576
dermatopathology-10-00010-g003.jpg
0.450718
c786b0affa734d4aafc8476e900043a5
Initial characterization of studied ILs. (a) Chemical structure of trihexyl(tetradecyl)phosphonium cation [P666,14]+ and anions: bis(2-ethylhexyl) phosphate [BEHP]-, bis(2,4,4-trimethylpentyl) phosphinate [BTMPP]−. (b) Differential scanning calorimetry (DSC) traces of [P666,14][BEHP] and [P666,14][BTMPP] obtained on cooling with the rate of 10 Kmin−1.
PMC9944924
41598_2023_29518_Fig1_HTML.jpg
0.421835
e1c5cdbf75fd4e0fa96faf65dcf93551
Dielectric response of examined ILs measured at ambient pressure. (a) Imaginary part of the complex electric modulus M’’ and (b) real part of complex conductivity σ’ as a function of frequency at various temperatures for [P666,14][BEHP] and [P666,14][BTMPP]. (c) Superimposition of M’’ spectra of [P666,14][BEHP], [P666,14][BTMPP] at 0.1 MPa and several temperatures. (d) Temperature dependence of conductivity relaxation times above and below Tg. (e) Temperature dependence of dc-conductivity. Solid lines in (d) and (e) denote the fits of the VFT equation to experimental data above Tg and the fits of Arrhenius law for the secondary relaxation process below Tg. Adj. R-Square of VFT fits is equal to 0.9999 and 0.9992 for [P666,14][BEHP], [P666,14][BTMPP], respectively. (f) βKWW as a function of M”(f) peak maximum for [P666,14][BEHP], [P666,14][BTMPP] and three others IL, i.e. [P666,14][BOB], [P666,14][TAU] and [P666,14][TFSI].
PMC9944924
41598_2023_29518_Fig2_HTML.jpg
0.42849
b06c9763b8c740f3b12530e65206ce7d
(a) Temperature dependence of density for [P666,14][BEHP] and [P666,14][BTMPP] measured at 0.1 MPa. The solid lines are linear fits. (b) Temperature dependence of viscosity for studied ILs. Solid lines denote the fit of the VFT equation. (c) Walden plot constructed for studied ILs comparing with ideal KCl line.
PMC9944924
41598_2023_29518_Fig3_HTML.jpg
0.457333
f1e789e2d6de4c5daec581bdfda18ace
(a) The Stickel plots of conductivity relaxation times τσ and viscosity η for [P666,14][BEHP] and [P666,14][BTMPP]. (b) The comparison of Stickel analysis for [P666,14][BTMPP] with [P666,14][BOB]. The inset shows the Stickel analysis of ILs with the LLT phenomenon. Data are taken from ref.31.
PMC9944924
41598_2023_29518_Fig4_HTML.jpg
0.453178
682801f0f3c34fbe8d2b9c497f202f5d
(a) The imaginary part of the dielectric loss modulus M’’ versus frequency registered during the compression of [P666,14][BEHP] and [P666,14][BTMPP] at T = 244 K. (b) Pressure dependence of the conductivity relaxation times τσ measured at different isothermal conditions for [P666,14][BEHP] and [P666,14][BTMPP]. The solid lines denote the corresponding fits, i.e., Arrhenius fit for [P666,14][BEHP] and pVTF fit for [P666,14][BTMPP]. (c) Pressure dependence of the glass transition temperature Tg for studied ILs. The solid lines are fits of the Andersson-Andersson equation to the experimental data. (d) Pressure dependence of log10 τσ (P) of [P666,14][BTMPP] for the same isotherms. The solid lines represent the fits with the hybrid model (Eq. 4).
PMC9944924
41598_2023_29518_Fig5_HTML.jpg
0.425574
1abb5bdfb10146599bc249f1bbd67594
(a) Pressure dependences of activation volume for [P666,14][BEHP] [P666,14][BTMPP] and [P666,14][BOB]. The lines are fits according to Eq. (4). In the inset, the temperature dependence of activation volume of [P666,14][BEHP] at ambient pressure is shown. (b) Temperature dependence of inflection pressure for [P666,14][BTMPP] and [P666,14][BOB]. Solid lines are linear fits, extrapolating to the inflection temperature at 0.1 MPa.
PMC9944924
41598_2023_29518_Fig6_HTML.jpg
0.442122
fac29f9ea013417ab16e450054e8e40c
Flowchart of the study participants (COVID-19 patients).
PMC9946204
pone.0279032.g001.jpg
0.480123
a995441bf73f4c13854155cdd38d2994
Distribution of the symptoms of the COVID-19 patients.
PMC9946204
pone.0279032.g002.jpg
0.400901
9f6f7b31a9cf4790a964ef7f03694038
Distribution of the COVID-19 patients by comorbidities (n = 427).
PMC9946204
pone.0279032.g003.jpg
0.524709
260dd4ac74294436988c1c455fb1bacd
(a) Percentage DPPH inhibition (b) Percentage OH radical inhibition and (c) Ferric-reducing antioxidant power of fractions of S. mombin stem bark extract. AA: Ascorbic acid; GA: Gallic acid; ASM: Aqueous fraction of S. mombin; BSM: n-butanol fraction of S. mombin; ESM: Ethyl acetate fraction of S. mombin; HSM: n-hexane fraction of S. mombin. #[P < 0.05]; significant compared with BSM.
PMC9947098
gr1.jpg
0.420282
ceea7a98269b4a10b80ce8f8fb91ec05
Percentage α-amylase inhibition of various fractions of S. mombin stem bark extract. ASM: Aqueous fraction of S. mombin; BSM: n-butanol fraction of S. mombin; ESM: Ethyl acetate fraction of S. mombin; HSM: n-hexane fraction of S. mombin. #[P < 0.05]; significant compared with 250 μg/mL.
PMC9947098
gr2.jpg