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Parte 1/Lista 01/013.py | Raiane-nepomuceno/Python | 0 | 163057 | n1=int(input('Digite a idade da primeira pessoa:'))
n2=int(input('Digite a idade da segunda pessoa:'))
n3=int(input('Digite a idade da terceira pessoa:'))
#Maior ou igual a 100
#menor que 100
soma = n1+ n2+ n3
if soma > 100 or soma == 100:
print('Maior ou igual a 100')
else:
print('Menor que 100')
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override.py | Sp-X/PCAP | 0 | 109804 | class Mouse:
def __init__(self, name):
self.name = name
def __str__(self):
return "My name is " + self.name
class AncientMouse(Mouse):
def __str__(self):
return "Meum nomen est " + self.name
mus = AncientMouse("Caesar") # Prints "Meum nomen est Caesar"
print(mus)
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methods/final_solution/graph_metrics.py | PaulRaid/H-index-prediction | 0 | 72639 | <reponame>PaulRaid/H-index-prediction<gh_stars>0
import networkx as nx
import pandas as pd
import argparse
import progress_bar as pb
pb.init(1, _prefix="Refactoring metrics \t \t")
parser = argparse.ArgumentParser(
description="GCN")
parser.add_argument("edge_index")
parser.add_argument("author_abstract_count")
parser.add_argument("output")
args = parser.parse_args()
edge_index_file_name = args.edge_index
author_abstract_count_name = args.author_abstract_count
output_file_name = args.output
df_edge_index = pd.read_csv(edge_index_file_name, sep=";")
df_author_abstract_count = pd.read_csv(author_abstract_count_name, sep=";", index_col=0)
df_graph_metrics = pd.DataFrame()
### Calcul des features du graph
G = nx.from_pandas_edgelist(df_edge_index, source= 'author_2', target= 'author_1')
degree = nx.degree(G)
core_number = nx.core_number(G)
degree_centr = nx.degree_centrality(G)
nbr_avg_deg = nx.average_neighbor_degree(G)
pagerank = nx.pagerank(G, alpha=0.9)
olayer = nx.onion_layers(G)
df_graph_metrics.insert(0, "degree", degree)
df_graph_metrics.insert(1, "core_number", core_number)
df_graph_metrics.insert(2, "degree_centr", degree_centr)
df_graph_metrics.insert(3, "nbr_avg_deg", nbr_avg_deg)
df_graph_metrics.insert(4, "pagerank", pagerank)
df_graph_metrics.insert(5, "olayer", olayer)
pb.set_length(df_graph_metrics.shape[0])
def compute_row_feature(row):
pb.progress(row.name)
row.degree = G.degree[row.name]
row.core_number = core_number[row.name]
row.degree_centr = degree_centr[row.name]
row.nbr_avg_deg = nbr_avg_deg[row.name]
row.pagerank = pagerank[row.name]
row.olayer = olayer[row.name]
return row
df_graph_metrics = df_graph_metrics.apply(lambda x: compute_row_feature(x), axis=1)
df_graph_metrics.index.name="author"
df_graph_metrics.insert(0, "author_abstract_count", df_author_abstract_count["count"])
pb.progress(df_graph_metrics.shape[0])
print(df_graph_metrics)
df_graph_metrics.to_csv(output_file_name, sep=";",index=True) | [
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config_template.py | oholsen/scales | 0 | 193108 | <reponame>oholsen/scales<filename>config_template.py
wifi_ssid = ""
wifi_password = ""
mqtt_username = ""
mqtt_password = ""
mqtt_address = ""
mqtt_port = 8883
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certbot/compat/os.py | sharpmind-de/certbot | 4 | 129056 | """
This compat modules is a wrapper of the core os module that forbids usage of specific operations
(e.g. chown, chmod, getuid) that would be harmful to the Windows file security model of Certbot.
This module is intended to replace standard os module throughout certbot projects (except acme).
"""
from __future__ import absolute_import
# First round of wrapping: we import statically all public attributes exposed by the os module
# This allows in particular to have pylint, mypy, IDEs be aware that most of os members are
# available in certbot.compat.os.
from os import * # type: ignore # pylint: disable=wildcard-import,unused-wildcard-import,redefined-builtin,os-module-forbidden
# Second round of wrapping: we import dynamically all attributes from the os module that have not
# yet been imported by the first round (static import). This covers in particular the case of
# specific python 3.x versions where not all public attributes are in the special __all__ of os,
# and so not in `from os import *`.
import os as std_os # pylint: disable=os-module-forbidden
import sys as std_sys
ourselves = std_sys.modules[__name__]
for attribute in dir(std_os):
# Check if the attribute does not already exist in our module. It could be internal attributes
# of the module (__name__, __doc__), or attributes from standard os already imported with
# `from os import *`.
if not hasattr(ourselves, attribute):
setattr(ourselves, attribute, getattr(std_os, attribute))
# Similar to os.path, allow certbot.compat.os.path to behave as a module
std_sys.modules[__name__ + '.path'] = path
# Clean all remaining importables that are not from the core os module.
del ourselves, std_os, std_sys
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] |
apps/ots/strategy/portfolio_hft.py | yt7589/iching | 32 | 43176 | #
from __future__ import print_function
import datetime as dt
import math
from apps.ots.strategy.performance import Performance
try:
import Queue as queue
except ImportError:
import queue
import numpy as np
import pandas as pd
#
from apps.ots.event.ots_event import OtsEvent
from apps.ots.event.signal_event import SignalEvent
from apps.ots.event.order_event import OrderEvent
from apps.ots.event.fill_event import FillEvent
from apps.ots.strategy.naive_risk_manager import NaiveRiskManager
from apps.ots.order.ots_order import OtsOrder
from apps.ots.ots_util import OtsUtil
class PortfolioHft(object):
'''
处理所有持仓和市值,其接收Stategy产生的SignalEvent,根据现有持仓情况和规则,
以及风控模型,还有就是算法交易情况(如交易量巨大时分步来进行),生成OrderEvent,
同时接收Exchange系统产生的FillEvent,最终更新持仓情况。
position DataFrame 存放用时间为索引的持仓数量
holdings DataFrame 存放特定时间索引对应的每个代码的现金和总的市场持仓价值,
以及资产组合总量的百分比变化
'''
def __init__(self, bars, events, start_date, initial_capital=100000):
self.risk_manager = NaiveRiskManager()
self.bars = bars
self.events = events
self.symbol_list = self.bars.symbol_list
self.start_date = start_date
self.initial_capital = initial_capital
self.all_positions = self.construct_all_positions()
self.current_positions = dict((k, v) for k, v in [(s, 0) for s in self.symbol_list])
self.all_holdings = self.construct_all_holdings()
self.current_holdings = self.construct_current_holdings()
def construct_all_positions(self):
'''
使用start_date确定开始日期,构造持仓列表
'''
d = dict((k, v) for k, v in [(s, 0.0) for s in self.symbol_list])
d['datetime'] = self.start_date
return [d]
def construct_all_holdings(self):
'''
构造字典保存所有资产组合的开始日期的价值
'''
d = dict((k, v) for k, v in [(s, 0.0) for s in self.symbol_list])
d['cash'] = self.initial_capital
d['commission'] = 0.0
d['total'] = self.initial_capital
return [d]
def construct_current_holdings(self):
''' 构造这典保存所有资产组合的当前价值 '''
d = dict((k, v) for k, v in [(s, 0.0) for s in self.symbol_list])
d['cash'] = self.initial_capital
d['commission'] = 0.0
d['total'] = self.initial_capital
return d
def update_timeindex(self, event):
'''
根据当前市场数据,增加一条新数据,反映当前所有持仓的市场价值
event为市场事件
'''
latest_datetime = self.bars.get_latest_bar_dt(self.symbol_list[0])
dp = dict((k, v) for k, v in [(s, 0) for s in self.symbol_list])
dp['datetime'] = latest_datetime
for s in self.symbol_list:
dp[s] = self.current_positions[s]
self.all_positions.append(dp)
dh = dict((k, v) for k, v in [(s, 0) for s in self.symbol_list])
dh['datetime'] = latest_datetime
dh['cash'] = self.current_holdings['cash']
dh['commission'] = self.current_holdings['commission']
dh['total'] = self.current_holdings['total']
for s in self.symbol_list:
market_value = self.current_positions[s] * self.bars.get_latest_bar_value(s, 'close')
dh[s] = market_value
dh['total'] += market_value
self.all_holdings.append(dh)
def update_positions_from_fill(self, fillEvent):
'''
根据FillEvent更新持仓矩阵来反映最新持仓
'''
fill_direction = 0
if fillEvent.direction == 'BUY':
fill_direction = 1
elif fillEvent.direction == 'SELL':
fill_direction = -1
self.current_positions[fillEvent.symbol] += fill_direction * fillEvent.quantity
def update_holdings_from_fill(self, fillEvent):
'''
根据FillEvent更新持仓价值矩阵
'''
fill_direction = 0
if fillEvent.direction == 'BUY':
fill_direction = 1
elif fillEvent.direction == 'SELL':
fill_direction = -1
fill_price = self.bars.get_latest_bar_value(fillEvent.symbol, 'close')
amount = fill_direction * fill_price * fillEvent.quantity
self.current_holdings[fillEvent.symbol] += amount
self.current_holdings['commission'] = fillEvent.commission
self.current_holdings['cash'] -= (amount + fillEvent.commission)
self.current_holdings['total'] -= (amount + fillEvent.commission)
def update_fill(self, event):
'''
接收到FillEvent后更新持仓和市值
'''
self.update_positions_from_fill(event)
self.update_holdings_from_fill(event)
def generate_order(self, signalEvent):
'''
根据信号事件生成订单对象
'''
order_event = None
symbol = signalEvent.symbol
direction = signalEvent.direction
strength = signalEvent.strength
mkt_quantity = self.risk_manager.get_mkt_quantity(signalEvent=signalEvent)
curr_quantity = self.current_holdings[symbol]
order_type = OtsOrder.OT_MKT
if direction == 'LONG' and curr_quantity == 0:
order_event = OrderEvent(symbol, order_type, mkt_quantity, 'BUY')
elif direction == 'SHORT' and curr_quantity >= mkt_quantity:
order_event = OrderEvent(symbol, order_type, mkt_quantity, 'SELL')
elif direction == 'EXIT' and curr_quantity>0:
order_event = OrderEvent(symbol, order_type, abs(mkt_quantity), 'SELL')
elif direction == 'EXIT' and curr_quantity<0:
order_event = OrderEvent(symbol, order_type, abs(mkt_quantity), 'BUY')
return order_event
def update_signal(self, event):
order_event = self.generate_order(event)
self.events.put(order_event)
def update_from_event(self, event):
''' update_signal
'''
if event.type == OtsEvent.ET_SIGNAL:
self.update_signal(event)
elif event.type == OtsEvent.ET_FILL:
self.update_fill(event)
def create_equity_curve_dataframe(self):
'''
基于all_holdings的DataFrame对象
'''
curve = pd.DataFrame(self.all_holdings)
print('curve: {0}; {1};'.format(type(curve), curve))
curve.set_index('datetime', inplace=True)
curve['returns'] = curve['total'].pct_change()
curve['equity_curve'] = (1.0 + curve['returns']).cumprod()
self.equity_curve = curve
def output_summary_stats(self):
'''
所有资产组合的合计信息
'''
total_return = self.equity_curve['equity_curve'][-1]
returns = self.equity_curve['returns']
pnl = self.equity_curve['equity_curve']
# 由于是分钟级数据,每年交易252天,每天6.5小时,每小时60分钟
sharpe_ratio = Performance.calculate_sharpe_ratio(returns, periods=252*6.5*60)
drawdown, max_dd, dd_duration = Performance.calculate_drawdowns(pnl)
self.equity_curve['drawdown'] = drawdown
stats = [('Total Return', '{0:0.2f}%'.format((total_return - 1.0)*100)),
('Sharpe Ratio', '{0:0.2f}'.format(sharpe_ratio)),
('Max Drawdown', '{0:0.2f}'.format(max_dd*100)),
('Drawdown Duration', '{0}'.format(dd_duration))
]
self.equity_curve.to_csv('equity.csv')
return stats
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src/pretix/base/migrations/0188_delete_requiredaction.py | fabm3n/pretix | 1,248 | 159486 | <reponame>fabm3n/pretix<gh_stars>1000+
# Generated by Django 3.2.2 on 2021-05-13 18:20
from django.db import migrations
class Migration(migrations.Migration):
dependencies = [
('pretixbase', '0187_normalize_salutation'),
]
operations = [
migrations.DeleteModel(
name='RequiredAction',
),
]
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13,
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] |
settings.py | Vetal1977/tf_aws_lambda | 31 | 109411 | <filename>settings.py
'''
Common settings for using in a project scope
'''
MODEL_ZIP_FILE_NAME_ENV_VAR = 'TF_AWS_MODEL_ZIP_FILE_NAME'
MODEL_PROTOBUF_FILE_NAME_ENV_VAR = 'TF_AWS_MODEL_PROTOBUF_FILE_NAME'
S3_MODEL_BUCKET_NAME_ENV_VAR = 'TF_AWS_S3_MODEL_BUCKET_NAME'
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scieio/conditions/apps.py | arnelimperial/scieio | 0 | 1607269 | from django.apps import AppConfig
from django.utils.translation import gettext_lazy as _
class ConditionsConfig(AppConfig):
name = 'scieio.conditions'
verbose_name = _("Product Conditions")
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pymer4/tests/test_utils.py | turbach/pymer4 | 127 | 104850 | <filename>pymer4/tests/test_utils.py
from __future__ import division
from pymer4.utils import con2R, R2con, get_resource_path, result_to_table
import pandas as pd
import numpy as np
from pymer4.models import Lm
import os
def test_con2R():
x = np.array([[-1, 0, 0, 1], [-0.5, -0.5, 0.5, 0.5], [-3 / 3, 1 / 3, 1 / 3, 1 / 3]])
out = con2R(x)
assert out.shape == (4, 3)
names = ["1 v s4", "1+2 vs 3+4", "1 vs 2+3+4"]
out = con2R(x, names=names)
assert isinstance(out, pd.DataFrame)
assert [x == y for x, y in zip(out.columns, names)]
assert out.shape == (4, 3)
out = con2R(np.array([-1, 0, 1]))
assert np.allclose(
out, np.array([[-0.5, 0.40824829], [0.0, -0.81649658], [0.5, 0.40824829]])
)
def test_result_to_table():
df = pd.read_csv(os.path.join(get_resource_path(), "sample_data.csv"))
model = Lm("DV ~ IV1 + IV3", data=df)
model.fit(summarize=False)
formatted = result_to_table(model, drop_intercept=False)
assert isinstance(formatted, pd.DataFrame)
assert formatted.shape == (3, 6)
assert set(["Predictor", "b", "ci", "t", "df", "p"]) == set(formatted.columns)
assert formatted.iloc[0, -1] == "< .001"
formatted = result_to_table(model, drop_intercept=True)
assert isinstance(formatted, pd.DataFrame)
assert formatted.shape == (2, 6)
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src/tests/flow.py | SeleSchaefer/super_resolution | 5 | 13664 | #!/usr/bin/env python3
# -*- coding: utf-8 -*-
import cv2
import imageio
import numpy as np
from tar.miscellaneous import convert_flow_to_color
prev = imageio.imread("ressources/1_1.png")
prev = cv2.cvtColor(prev, cv2.COLOR_RGB2GRAY)
curr = imageio.imread("ressources/1_2.png")
curr = cv2.cvtColor(curr, cv2.COLOR_RGB2GRAY)
flow = cv2.calcOpticalFlowFarneback(prev, curr, None, 0.9, 15, 20, 100, 10, 1.5, cv2.OPTFLOW_FARNEBACK_GAUSSIAN)
rgb = convert_flow_to_color(flow)
imageio.imsave("/Users/sele/Desktop/test.png", rgb)
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magnolia/python/training/data_iteration/mix_data.py | rashley-iqt/Magnolia | 51 | 130168 | <filename>magnolia/python/training/data_iteration/mix_data.py<gh_stars>10-100
import argparse
import logging.config
import json
import numpy as np
import msgpack
import tqdm
from magnolia.utils.sample import Sample
from magnolia.utils.mixing import construct_mixed_sample
def main():
# parse command line arguments
parser = argparse.ArgumentParser(description='Run preprocessing pipeline.')
parser.add_argument('--settings', '-s',
default='../../settings/mixing_template.json',
help='sample mixing settings JSON file')
parser.add_argument('--logger_settings', '-l',
default='../../settings/logging.conf',
help='logging configuration file')
args = parser.parse_args()
# Load logging configuration
logging.config.fileConfig(args.logger_settings)
logger = logging.getLogger('partitioning')
with open(args.settings) as settings_file:
settings = json.load(settings_file)
logger.debug('settings {}'.format(settings))
rng = np.random.RandomState(settings['rng_seed'])
number_of_mixed_samples = settings['number_of_mixed_samples']
byte_buffer = settings['byte_buffer']
snr_range = settings['snr_range']
output_file_name = settings['output_file']
target_sample_length = settings['target_sample_length']
signals = []
noises = []
for signal_setting in settings['signals']:
signals.append(Sample(rng, signal_setting))
for noise_setting in settings['noises']:
noises.append(Sample(rng, noise_setting))
ofile = open(output_file_name, 'bw+')
for _ in tqdm.trange(number_of_mixed_samples):
snr = rng.uniform(*snr_range)
result = construct_mixed_sample(signals, noises, snr, target_sample_length)
bresult = msgpack.packb(result)
ofile.write(bytes(format(len(bresult), str(byte_buffer)), 'utf-8'))
ofile.write(bresult)
if __name__ == '__main__':
main()
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sched_slack_bot/reminder/sender.py | Germandrummer92/SchedSlackBot | 0 | 23064 | <gh_stars>0
import abc
from sched_slack_bot.model.reminder import Reminder
class ReminderSender(abc.ABC):
@abc.abstractmethod
def send_reminder(self, reminder: Reminder) -> None:
raise NotImplementedError("Not Implemented")
@abc.abstractmethod
def send_skip_message(self, reminder: Reminder) -> None:
raise NotImplementedError("Not Implemented")
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neuroConstruct/pythonScripts/RegenerateNml2.py | OpenSourceBrain/L5bPyrCellHayEtAl2011 | 4 | 107391 | import sys
import os
try:
from java.io import File
except ImportError:
print "Note: this file should be run using ..\\..\\..\\nC.bat -python XXX.py' or '../../../nC.sh -python XXX.py'"
print "See http://www.neuroconstruct.org/docs/python.html for more details"
quit()
sys.path.append(os.environ["NC_HOME"]+"/pythonNeuroML/nCUtils")
import ncutils as nc # Many useful functions such as SimManager.runMultipleSims found here
projFile = File(os.getcwd(), "../L5bPyrCellHayEtAl2011.ncx")
simConfigs = []
simConfigs.append("TestNeuroML")
nc.generateNeuroML2(projFile, simConfigs)
extra_files = ['.test*',
'cell2_fromNeurolucida.nml',
'CaDynamics_E2_NML2*gamma*.nml',
'L5PC.cell.nml',
'*TestL5PC*ml',
'analyse_chans.sh',
'compare_nml2_mods.py',
'mods']
if len(sys.argv)==2 and sys.argv[1] == "-f":
extra_files.append('L5bPyrCellHayEtAl2011.net.nml')
extra_files.append('LEMS_L5bPyrCellHayEtAl2011.xml')
extra_files.append('LEMS_L5bPyrCellHayEtAl2011_LowDt.xml')
from subprocess import call
for f in extra_files:
call(["git", "checkout", "../generatedNeuroML2/%s"%f])
quit()
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] |
FigureTable/NeuroPathRegions/barplots.py | vkola-lab/multi-task | 1 | 15579 | from correlate import *
import matplotlib
import matplotlib.pyplot as plt
import seaborn as sns
from matplotlib import rc, rcParams
rc('axes', linewidth=1)
rc('font', weight='bold', size=10)
def barplots(prefixes, regions, stains, corre, error, name, folder, ylim):
for stain in stains:
barplot(prefixes, regions, stain, corre, error, name, folder, ylim)
def barplot(prefixes, regions, stain, corre, error, name, folder, ylim):
colors = ['#bfe2e3', '#69869c', '#36896e', '#c22e00', '#c6d645', '#ffd3b6', '#b2b2b2', '#4724a9',
'#9bc84d', '#7141ae', '#d2a782', '#933b61', '#435299', '#d88770', '#765aa8', '#719795']
Val, Std = [], []
for i, prefix in enumerate(prefixes):
val, std = corre[prefix][stain], error[prefix][stain]
Val.append(val)
Std.append(std)
fig, ax = plt.subplots(dpi=300, figsize=(6, 3))
index = [i for i in range(len(regions))]
ax.bar(index, Val, yerr=Std, capsize=2, color=colors[:len(prefixes)])
ax.set_ylabel('Spearman\'s rank correlation', fontweight='bold')
ax.set_ylim(ylim[0]-0.05, ylim[1]+0.05)
ax.set_xticks(index)
ax.set_xticklabels(regions, rotation=45, ha="right")
ax.grid(which='major', axis='both', linestyle='--')
plt.savefig(folder + 'bar_{}_{}.png'.format(stain, name), bbox_inches='tight')
plt.close()
if __name__ == "__main__":
years = 2
layername = 'block2BN'
time_threshold, type = 365*years, 'COG'
folder = type + '_correlation_{}_years/'.format(years)
if not os.path.exists(folder):
os.mkdir(folder)
interval = file_interval_info(type)
y_lim = [0, 0]
corre = collections.defaultdict(dict)
error = collections.defaultdict(dict)
pool = [[0, prefixes[i], regions[i]] for i in range(len(regions))]
for i, region in enumerate(prefixes):
for stain in stains:
corr, std = get_correlation(region + '_' + stain, prefix_idx[region], time_threshold, interval, folder, type, layername, missing=0)
corre[region][stain] = corr
error[region][stain] = 0
y_lim[1] = max(y_lim[1], corr)
y_lim[0] = min(y_lim[0], corr)
pool[i][0] -= corr
pool.sort()
prefixes = [p[1] for p in pool]
regions = [p[2] for p in pool]
barplots(prefixes, regions, stains, corre, error, '{}days_{}shap_{}'.format(time_threshold, type, layername), folder, y_lim)
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] |
Robocop.py | kitlith/robocop-ng | 0 | 77223 | import os
import asyncio
import sys
import logging
import logging.handlers
import traceback
import aiohttp
import config
import discord
from discord.ext import commands
script_name = os.path.basename(__file__).split('.')[0]
log_file_name = f"{script_name}.log"
# Limit of discord (non-nitro) is 8MB (not MiB)
max_file_size = 1000 * 1000 * 8
backup_count = 3
file_handler = logging.handlers.RotatingFileHandler(
filename=log_file_name, maxBytes=max_file_size, backupCount=backup_count)
stdout_handler = logging.StreamHandler(sys.stdout)
log_format = logging.Formatter(
'[%(asctime)s] {%(filename)s:%(lineno)d} %(levelname)s - %(message)s')
file_handler.setFormatter(log_format)
stdout_handler.setFormatter(log_format)
log = logging.getLogger('discord')
log.setLevel(logging.INFO)
log.addHandler(file_handler)
log.addHandler(stdout_handler)
def get_prefix(bot, message):
prefixes = config.prefixes
return commands.when_mentioned_or(*prefixes)(bot, message)
wanted_jsons = ["data/restrictions.json",
"data/robocronptab.json",
"data/userlog.json"]
initial_extensions = ['cogs.common',
'cogs.admin',
'cogs.verification',
'cogs.mod',
'cogs.mod_note',
'cogs.mod_reacts',
'cogs.mod_userlog',
'cogs.mod_timed',
'cogs.basic',
'cogs.logs',
'cogs.err',
'cogs.lockdown',
'cogs.legacy',
'cogs.links',
'cogs.remind',
'cogs.robocronp',
'cogs.meme']
bot = commands.Bot(command_prefix=get_prefix,
description=config.bot_description, pm_help=True)
bot.log = log
bot.loop = asyncio.get_event_loop()
bot.config = config
bot.script_name = script_name
bot.wanted_jsons = wanted_jsons
if __name__ == '__main__':
for extension in initial_extensions:
try:
bot.load_extension(extension)
except Exception as e:
log.error(f'Failed to load extension {extension}.')
log.error(traceback.print_exc())
@bot.event
async def on_ready():
aioh = {"User-Agent": f"{script_name}/1.0'"}
bot.aiosession = aiohttp.ClientSession(headers=aioh)
bot.app_info = await bot.application_info()
bot.botlog_channel = bot.get_channel(config.botlog_channel)
log.info(f'\nLogged in as: {bot.user.name} - '
f'{bot.user.id}\ndpy version: {discord.__version__}\n')
game_name = f"{config.prefixes[0]}help"
# Send "Robocop has started! x has y members!"
guild = bot.botlog_channel.guild
msg = f"{bot.user.name} has started! "\
f"{guild.name} has {guild.member_count} members!"
data_files = [discord.File(fpath) for fpath in wanted_jsons]
await bot.botlog_channel.send(msg, files=data_files)
activity = discord.Activity(name=game_name,
type=discord.ActivityType.listening)
await bot.change_presence(activity=activity)
@bot.event
async def on_command(ctx):
log_text = f"{ctx.message.author} ({ctx.message.author.id}): "\
f"\"{ctx.message.content}\" "
if ctx.guild: # was too long for tertiary if
log_text += f"on \"{ctx.channel.name}\" ({ctx.channel.id}) "\
f"at \"{ctx.guild.name}\" ({ctx.guild.id})"
else:
log_text += f"on DMs ({ctx.channel.id})"
log.info(log_text)
@bot.event
async def on_error(event_method, *args, **kwargs):
log.error(f"Error on {event_method}: {sys.exc_info()}")
@bot.event
async def on_command_error(ctx, error):
error_text = str(error)
err_msg = f"Error with \"{ctx.message.content}\" from "\
f"\"{ctx.message.author} ({ctx.message.author.id}) "\
f"of type {type(error)}: {error_text}"
log.error(err_msg)
if not isinstance(error, commands.CommandNotFound):
err_msg = bot.escape_message(err_msg)
await bot.botlog_channel.send(err_msg)
if isinstance(error, commands.NoPrivateMessage):
return await ctx.send("This command doesn't work on DMs.")
elif isinstance(error, commands.MissingPermissions):
roles_needed = '\n- '.join(error.missing_perms)
return await ctx.send(f"{ctx.author.mention}: You don't have the right"
" permissions to run this command. You need: "
f"```- {roles_needed}```")
elif isinstance(error, commands.BotMissingPermissions):
roles_needed = '\n-'.join(error.missing_perms)
return await ctx.send(f"{ctx.author.mention}: Bot doesn't have "
"the right permissions to run this command. "
"Please add the following roles: "
f"```- {roles_needed}```")
elif isinstance(error, commands.CommandOnCooldown):
return await ctx.send(f"{ctx.author.mention}: You're being "
"ratelimited. Try in "
f"{error.retry_after:.1f} seconds.")
elif isinstance(error, commands.CheckFailure):
return await ctx.send(f"{ctx.author.mention}: Check failed. "
"You might not have the right permissions "
"to run this command.")
elif isinstance(error, commands.CommandInvokeError) and\
("Cannot send messages to this user" in error_text):
return await ctx.send(f"{ctx.author.mention}: I can't DM you.\n"
"You might have me blocked or have DMs "
f"blocked globally or for {ctx.guild.name}.\n"
"Please resolve that, then "
"run the command again.")
elif isinstance(error, commands.CommandNotFound):
# Nothing to do when command is not found.
return
help_text = f"Usage of this command is: ```{ctx.prefix}"\
f"{ctx.command.signature}```\nPlease see `{ctx.prefix}help "\
f"{ctx.command.name}` for more info about this command."
if isinstance(error, commands.BadArgument):
return await ctx.send(f"{ctx.author.mention}: You gave incorrect "
f"arguments. {help_text}")
elif isinstance(error, commands.MissingRequiredArgument):
return await ctx.send(f"{ctx.author.mention}: You gave incomplete "
f"arguments. {help_text}")
@bot.event
async def on_message(message):
if message.author.bot:
return
if (message.guild) and (message.guild.id not in config.guild_whitelist):
return
# Ignore messages in newcomers channel, unless it's potentially reset
if message.channel.id == config.welcome_channel and\
"reset" not in message.content:
return
ctx = await bot.get_context(message)
await bot.invoke(ctx)
if not os.path.exists("data"):
os.makedirs("data")
for wanted_json in wanted_jsons:
if not os.path.exists(wanted_json):
with open(wanted_json, "w") as f:
f.write("{}")
bot.run(config.token, bot=True, reconnect=True, loop=bot.loop)
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payments/migrations/0019_markdownx.py | jakereps/workshops.qiime2.org | 0 | 144383 | # ----------------------------------------------------------------------------
# Copyright (c) 2016-2018, QIIME 2 development team.
#
# Distributed under the terms of the Modified BSD License.
#
# The full license is in the file LICENSE, distributed with this software.
# ----------------------------------------------------------------------------
from django.db import migrations
import markdownx.models
class Migration(migrations.Migration):
dependencies = [
('payments', '0018_workshops_defaults'),
]
operations = [
migrations.AlterField(
model_name='workshop',
name='description',
field=markdownx.models.MarkdownxField(),
),
]
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ykdl/extractors/sina/video.py | Fearyncess/ykdl | 2 | 132117 | #!/usr/bin/env python
# -*- coding: utf-8 -*-
from ykdl.extractor import VideoExtractor
from ykdl.util.match import match1, matchall
from ykdl.util.html import get_content, get_location
from ykdl.videoinfo import VideoInfo
import json
def get_realurl(url):
location = get_location(url)
if location != url:
return location
else:
html = get_content(url)
return matchall(html, ['CDATA\[([^\]]+)'])[1]
class Sina(VideoExtractor):
name = u"新浪视频 (sina)"
def prepare(self):
info = VideoInfo(self.name)
self.vid = match1(self.url, 'video_id=(\d+)', '#(\d{5,})', '(\d{5,})\.swf')
if not self.vid:
html = get_content(self.url)
self.vid = match1(html,
'video_id:\'([^\']+)',
'SINA_TEXT_PAGE_INFO[\s\S]+?video_id: ?(\d+)')
assert self.vid, "can't get vid"
api_url = 'http://s.video.sina.com.cn/video/h5play?video_id={}'.format(self.vid)
data = json.loads(get_content(api_url))['data']
info.title = data['title']
for t in ['mp4', '3gp', 'flv']:
if t in data['videos']:
video_info = data['videos'][t]
break
for profile in video_info:
if not profile in info.stream_types:
v = video_info[profile]
tp = v['type']
url = v['file_api']+'?vid='+v['file_id']
r_url = get_realurl(url)
info.stream_types.append(profile)
info.streams[profile] = {'container': tp, 'video_profile': profile, 'src': [r_url], 'size' : 0}
return info
def prepare_list(self):
html = get_content(self.url)
return matchall(html, ['video_id: ([^,]+)'])
site = Sina()
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] |
model-optimizer/extensions/front/caffe/correlation_ext_test.py | fujunwei/dldt | 1 | 140296 | <reponame>fujunwei/dldt
"""
Copyright (C) 2018-2020 Intel Corporation
Licensed under the Apache License, Version 2.0 (the "License");
you may not use this file except in compliance with the License.
You may obtain a copy of the License at
http://www.apache.org/licenses/LICENSE-2.0
Unless required by applicable law or agreed to in writing, software
distributed under the License is distributed on an "AS IS" BASIS,
WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
See the License for the specific language governing permissions and
limitations under the License.
"""
import unittest
from unittest.mock import patch
from extensions.front.caffe.correlation_ext import CorrelationFrontExtractor
from extensions.ops.correlation import CorrelationOp
from mo.utils.unittest.extractors import FakeMultiParam
from mo.utils.unittest.graph import FakeNode
from mo.ops.op import Op
class FakeCorrProtoLayer:
def __init__(self, val):
self.correlation_param = val
class TestCorrelationExt(unittest.TestCase):
@classmethod
def setUpClass(cls):
Op.registered_ops['Correlation'] = CorrelationOp
def test_da_no_pb_no_ml(self):
self.assertRaises(AttributeError, CorrelationFrontExtractor.extract, None)
@patch('extensions.front.caffe.correlation_ext.merge_attrs')
def test_resample_ext_ideal_numbers(self, merge_attrs_mock):
params = {
'pad': 20,
'kernel_size': 1,
'max_displacement': 20,
'stride_1': 1,
'stride_2': 2,
'single_direction': 0,
'do_abs': False,
'correlation_type': 'caffe.CorrelationParameter.MULTIPLY'
}
merge_attrs_mock.return_value = {
**params,
'test': 54,
'test2': 'test3'
}
fake_pl = FakeCorrProtoLayer(FakeMultiParam(params))
fake_node = FakeNode(fake_pl, None)
CorrelationFrontExtractor.extract(fake_node)
exp_res = {
'type': "Correlation",
'pad': 20,
'kernel_size': 1,
'max_displacement': 20,
'stride_1': 1,
'stride_2': 2,
'single_direction': 0,
'do_abs': False,
'correlation_type': 'caffe.CorrelationParameter.MULTIPLY',
'infer': CorrelationOp.corr_infer
}
for key in exp_res.keys():
self.assertEqual(fake_node[key], exp_res[key])
| [
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1989,
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2314,
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2
] |
Chapter02/Pandas_Join.py | PacktPublishing/Bioinformatics-with-Python-Cookbook-third-edition | 9 | 111492 | # # Pandas advanced
import numpy as np
import pandas as pd
# # Code to sample original data
#
# ```
# vdata = pd.read_csv("2021VAERSDATA.csv.gz", encoding="iso-8859-1")
# vdata.sample(frac=0.9).to_csv("vdata_sample.csv.gz", index=False)
# vax = pd.read_csv("2021VAERSVAX.csv.gz", encoding="iso-8859-1")
# vax.sample(frac=0.9).to_csv("vax_sample.csv.gz", index=False)
# ```
vdata = pd.read_csv("vdata_sample.csv.gz") # No encoding
vax = pd.read_csv("vax_sample.csv.gz")
vdata_with_vax = vdata.join(
vax.set_index("VAERS_ID"),
on="VAERS_ID",
how="inner")
len(vdata), len(vax), len(vdata_with_vax)
lost_vdata = vdata.loc[~vdata.index.isin(vdata_with_vax.index)]
lost_vdata
lost_vax = vax[~vax["VAERS_ID"].isin(vdata_with_vax["VAERS_ID"])]
lost_vax
# Left, Right and outer caveats
vdata_with_vax_left = vdata.join(
vax.set_index("VAERS_ID"),
on="VAERS_ID")
vdata_with_vax_left.groupby("VAERS_ID").size().sort_values()
len(vdata_with_vax_left), len(vdata_with_vax_left.VAERS_ID.unique())
# +
#vdata_all = pd.read_csv("2021VAERSDATA.csv.gz", encoding="iso-8859-1")
#vax_all = pd.read_csv("2021VAERSVAX.csv.gz", encoding="iso-8859-1")
# -
dead = vdata[vdata.DIED == "Y"]
vax19 = vax[vax.VAX_TYPE == "COVID19"]
vax19_dead = vax19.join(dead.set_index("VAERS_ID"), on="VAERS_ID", how="right")
# join on id, discuss
len(vax19), len(dead), len(vax19_dead)
len(vax19_dead[vax19_dead.VAERS_ID.duplicated()])
len(vax19_dead) - len(dead)
vax19_dead["STATE"] = vax19_dead["STATE"].str.upper()
dead_lot = vax19_dead[["VAERS_ID", "VAX_LOT", "STATE"]].set_index(["VAERS_ID", "VAX_LOT"])
dead_lot_clean = dead_lot[~dead_lot.index.duplicated()]
dead_lot_clean = dead_lot_clean.reset_index()
dead_lot_clean[dead_lot_clean.VAERS_ID.isna()]
baddies = dead_lot_clean.groupby("VAX_LOT").size().sort_values(ascending=False)
for i, (lot, cnt) in enumerate(baddies.items()):
print(lot, cnt, len(dead_lot_clean[dead_lot_clean.VAX_LOT == lot].groupby("STATE")))
if i == 10:
break
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2867,
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] |
Chapter07/python/com/sparksamples/linearregression/LinearRegressionCrossValidationIterations.py | quguiliang/Machine-Learning-with-Spark-Second-Edition | 112 | 60670 | <reponame>quguiliang/Machine-Learning-with-Spark-Second-Edition
import os
import sys
import pylab as P
import matplotlib
import matplotlib.pyplot as plt
from com.sparksamples.util import evaluate
from com.sparksamples.linearregression.LinearRegressionUtil import get_train_test_data
try:
from pyspark import SparkContext
from pyspark import SparkConf
except ImportError as e:
print ("Error importing Spark Modules", e)
sys.exit(1)
from com.sparksamples.util import SPARK_HOME
os.environ['SPARK_HOME'] = SPARK_HOME
sys.path.append(SPARK_HOME + "/python")
def main():
execute()
def execute():
train_data, test_data = get_train_test_data()
params = [1, 5, 10, 20, 50, 100, 200]
metrics = [evaluate(train_data, test_data, param, 0.01, 0.0, 'l2', False) for param in params]
print params
print metrics
P.plot(params, metrics)
fig = matplotlib.pyplot.gcf()
plt.xscale('log')
plt.title("LinearRegressionWithSGD : Iterations")
plt.xlabel("Iterators")
plt.ylabel("RMSLE")
P.show()
if __name__ == "__main__":
main()
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Packs/mnemonicMDR/Integrations/ArgusManagedDefence/ArgusManagedDefence.py | matan-xmcyber/content | 0 | 5758 | import demistomock as demisto
from CommonServerPython import *
""" IMPORTS """
import json
import urllib3
import dateparser
import traceback
from typing import Any, Dict, List, Union
import logging
from argus_api import session as argus_session
from argus_api.api.currentuser.v1.user import get_current_user
from argus_api.api.cases.v2.case import (
add_case_tag,
add_comment,
advanced_case_search,
close_case,
create_case,
delete_case,
delete_comment,
download_attachment,
edit_comment,
get_attachment,
get_case_metadata_by_id,
list_case_attachments,
list_case_tags,
list_case_comments,
remove_case_tag_by_id,
remove_case_tag_by_key_value,
update_case,
)
from argus_api.api.events.v1 import get_event_by_path
from argus_api.api.events.v1.case.case import get_events_for_case
from argus_api.api.events.v1.aggregated import (
find_aggregated_events,
list_aggregated_events,
)
from argus_api.api.events.v1.payload import get_payload
from argus_api.api.events.v1.pcap import get_pcap
from argus_api.api.events.v1.nids import find_n_i_d_s_events, list_n_i_d_s_events
from argus_api.api.pdns.v3.search import search_records
from argus_api.api.reputation.v1.observation import (
fetch_observations_for_domain,
fetch_observations_for_i_p,
)
# Disable insecure warnings
urllib3.disable_warnings()
""" CONSTANTS """
DATE_FORMAT = "%Y-%m-%dT%H:%M:%SZ"
PRETTY_DATE_FORMAT = "%b %d, %Y, %H:%M:%S"
FETCH_TAG = demisto.params().get("fetch_tag")
""" HELPER FUNCTIONS """
def set_argus_settings(
api_key: str, base_url: str = None, proxies: dict = None, verify: bool = None
):
argus_session.api_key = api_key
argus_session.base_url = base_url
argus_session.proxies = proxies
argus_session.verify = verify
def argus_priority_to_demisto_severity(priority: str) -> int:
mapping = {"low": 1, "medium": 2, "high": 3, "critical": 4}
return mapping.get(priority, 0)
def argus_status_to_demisto_status(status: str) -> int:
mapping = {
"pendingCustomer": 0,
"pendingSoc": 0,
"pendingVendor": 0,
"pendingClose": 0,
"workingSoc": 1,
"workingCustomer": 1,
"closed": 2,
}
return mapping.get(status, 0)
def build_argus_priority_from_min_severity(min_severity: str) -> List[str]:
severities = ["low", "medium", "high", "critical"]
min_severity_list = []
for severity in severities:
if argus_priority_to_demisto_severity(
min_severity.lower()
) <= argus_priority_to_demisto_severity(severity):
min_severity_list.append(severity)
return min_severity_list
def parse_first_fetch(first_fetch: Any) -> Any:
if isinstance(first_fetch, str):
if first_fetch[0] != "-":
first_fetch = f"-{first_fetch}"
return first_fetch
def build_tags_from_list(lst: list) -> List[Dict]:
if not lst:
return []
if len(lst) % 2 != 0:
return []
tags = []
for i in range(0, len(lst), 2):
tags.append({"key": lst[i], "value": lst[i + 1]})
return tags
def str_to_dict(string: str) -> dict:
if not string:
return {}
lst = argToList(string)
if len(lst) % 2 != 0:
return {}
return {lst[i]: lst[i + 1] for i in range(0, len(lst), 2)}
def date_time_to_epoch_milliseconds(date_time: Union[datetime, str] = None) -> int:
if isinstance(date_time, datetime):
return int(date_time.timestamp() * 1000)
if isinstance(date_time, str):
return date_time_to_epoch_milliseconds(dateparser.parse(date_time))
return int(datetime.now().timestamp() * 1000)
def pretty_print_date(date_time: Union[datetime, str] = None) -> str:
if isinstance(date_time, datetime):
return date_time.strftime(PRETTY_DATE_FORMAT)
if isinstance(date_time, str):
return pretty_print_date(dateparser.parse(date_time))
return datetime.now().strftime(PRETTY_DATE_FORMAT)
def pretty_print_case_metadata(result: dict, title: str = None) -> str:
data = result["data"]
string = title if title else f"# #{data['id']}: {data['subject']}\n"
string += "_Priority: {}, status: {}, last updated: {}_\n".format(
data["priority"], data["status"], pretty_print_date(data["lastUpdatedTime"])
)
string += "Reported by {} at {}\n\n".format(
data["publishedByUser"]["name"], pretty_print_date(data["publishedTime"])
)
string += data["description"]
return string
def pretty_print_comment(comment: dict, title: str = None) -> str:
string = title if title else ""
string += f"#### *{comment['addedByUser']['userName']} - {pretty_print_date(comment['addedTime'])}*\n"
string += (
f"_Last updated {pretty_print_date(comment['lastUpdatedTime'])}_\n"
if comment["lastUpdatedTime"]
else ""
)
string += f"{comment['comment']}\n\n"
string += f"_id: {comment['id']}_\n"
string += f"_Flags: {str(comment['flags'])}_\n" if comment["flags"] else ""
string += "* * *\n"
return string
def pretty_print_comments(comments: list, title: str = None) -> str:
string = title if title else ""
for comment in comments:
string += pretty_print_comment(comment)
return string
def pretty_print_events(result: dict, title: str = None) -> str:
string = title if title else ""
string += "_Count: {}, showing {} events, from {} to {}_\n".format(
result["count"], result["size"], result["offset"], result["limit"]
)
string += tableToMarkdown("Events", result["data"])
return string
""" COMMAND FUNCTIONS """
def test_module_command() -> str:
response = get_current_user()
if response["responseCode"] == 200:
return "ok"
return (
f"Unable to communicate with Argus API {response['responseCode']}, {response}"
)
def fetch_incidents(
last_run: dict, first_fetch_period: str, limit: int = 25, min_severity: str = "low"
):
start_timestamp = last_run.get("start_time", None) if last_run else None
# noinspection PyTypeChecker
result = advanced_case_search(
startTimestamp=start_timestamp if start_timestamp else first_fetch_period,
endTimestamp="now",
limit=limit,
sortBy=["createdTimestamp"],
priority=build_argus_priority_from_min_severity(min_severity),
subCriteria=[
{"exclude": True, "status": ["closed"]},
],
timeFieldStrategy=["createdTimestamp"],
)
incidents = []
for case in result["data"]:
incidents.append(
{
"name": f"#{case['id']}: {case['subject']}",
"occurred": case["createdTime"],
"severity": argus_priority_to_demisto_severity(case["priority"]),
"status": argus_status_to_demisto_status(case["status"]),
"details": case["description"],
"customFields": {
"argus_id": str(case["id"]),
"type": case["type"],
"category": case["category"]["name"] if case["category"] else None,
"service": case["service"]["name"],
"lastUpdatedTime": case["lastUpdatedTime"],
"createdTimestamp": case["createdTimestamp"],
"customer": case["customer"]["shortName"],
},
"rawJSON": json.dumps(case),
}
)
if result["data"]:
last_run["start_time"] = str(result["data"][-1]["createdTimestamp"] + 1)
return last_run, incidents
def add_case_tag_command(args: Dict[str, Any]) -> CommandResults:
case_id = args.get("case_id", None)
key = args.get("key", None)
value = args.get("value", None)
if not case_id:
raise ValueError("case_id not specified")
if not key:
raise ValueError("key not specified")
if not value:
raise ValueError("value not specified")
tag = {"key": key, "value": value}
result = add_case_tag(caseID=case_id, tags=tag)
headers = ["key", "value", "addedTime"]
readable_output = tableToMarkdown(
f"#{case_id}: Tags", result["data"], headers=headers
)
return CommandResults(
readable_output=readable_output,
outputs_prefix="Argus.Tags",
outputs=result,
raw_response=result,
)
def add_comment_command(args: Dict[str, Any]) -> CommandResults:
case_id = args.get("case_id", None)
comment = args.get("comment", None)
if not case_id:
raise ValueError("case_id not specified")
if not comment:
raise ValueError("comment not specified")
result = add_comment(
caseID=case_id,
comment=comment,
asReplyTo=args.get("as_reply_to", None),
internal=args.get("internal", None),
originEmailAddress=args.get("origin_email_address", None),
associatedAttachmentID=args.get("associated_attachment_id", None),
)
return CommandResults(
readable_output=pretty_print_comment(
result["data"], f"# #{case_id}: Added comment\n"
),
outputs_prefix="Argus.Comment",
outputs=result,
raw_response=result,
)
def advanced_case_search_command(args: Dict[str, Any]) -> CommandResults:
# noinspection PyTypeChecker
result = advanced_case_search(
startTimestamp=args.get("start_timestamp", None),
endTimestamp=args.get("end_timestamp", None),
limit=args.get("limit", None),
offset=args.get("offset", None),
includeDeleted=args.get("include_deleted", None),
subCriteria=argToList(args.get("sub_criteria", None)),
exclude=args.get("exclude", None),
required=args.get("required", None),
customerID=argToList(args.get("customer_id", None)),
caseID=argToList(args.get("case_id", None)),
customer=argToList(args.get("customer", None)),
type=argToList(args.get("case_type", None)),
service=argToList(args.get("service", None)),
category=argToList(args.get("category", None)),
status=argToList(args.get("status", None)),
priority=argToList(args.get("priority", None)),
assetID=argToList(args.get("asset_id", None)),
tag=argToList(args.get("tag", None)),
workflow=argToList(args.get("workflow", None)),
field=argToList(args.get("field", None)),
keywords=argToList(args.get("keywords", None)),
timeFieldStrategy=argToList(args.get("time_field_strategy", None)),
timeMatchStrategy=args.get("time_match_strategy", None),
keywordFieldStrategy=argToList(args.get("keyword_field_strategy", None)),
keywordMatchStrategy=args.get("keyword_match_strategy", None),
user=argToList(args.get("user", None)),
userFieldStrategy=argToList(args.get("user_field_strategy", None)),
userAssigned=args.get("user_assigned", None),
techAssigned=args.get("tech_assigned", None),
includeWorkflows=args.get("include_workflows", None),
includeDescription=args.get("include_description", None),
accessMode=argToList(args.get("access_mode", None)),
explicitAccess=argToList(args.get("explicit_access", None)),
sortBy=argToList(args.get("sort_by", None)),
includeFlags=argToList(args.get("include_flags", None)),
excludeFlags=argToList(args.get("exclude_flags", None)),
)
readable_output = f"Advanced Case Search: {result['count']} result(s)\n"
readable_output += tableToMarkdown(
"Output not suitable for playground", result["data"]
)
return CommandResults(
readable_output=readable_output,
outputs_prefix="Argus.Cases",
outputs=result,
raw_response=result,
)
def close_case_command(args: Dict[str, Any]) -> CommandResults:
case_id = args.get("case_id", None)
if not case_id:
raise ValueError("case_id not specified")
result = close_case(
caseID=case_id,
comment=args.get("comment", None),
)
readable_output = f"# #{case_id}: close case\n"
readable_output += (
f"_Status: {result['data']['status']}, at: {result['data']['closedTime']}_"
)
return CommandResults(
readable_output=readable_output,
outputs_prefix="Argus.Case",
outputs=result,
raw_response=result,
)
def create_case_command(args: Dict[str, Any]) -> CommandResults:
subject = args.get("subject", None)
description = args.get("description", None)
service = args.get("service", None)
case_type = args.get("type", None)
tags = args.get("tags", None)
if not subject:
raise ValueError("subject not specified")
if not description:
raise ValueError("description not specified")
if not service:
raise ValueError("service not specified")
if not case_type:
raise ValueError("case_type not specified")
if tags:
tags = str(tags).split(",")
if len(tags) % 2 != 0:
raise ValueError("tags list must be of even number", tags)
tags = build_tags_from_list(tags)
result = create_case(
customer=args.get("customer", None),
service=service,
category=args.get("category", None),
type=case_type,
status=args.get("status", None),
tags=tags,
subject=subject,
description=description,
customerReference=args.get("customer_reference", None),
priority=args.get("priority", None),
accessMode=args.get("access_mode", None),
originEmailAddress=args.get("origin_email_address", None),
publish=args.get("publish", None),
defaultWatchers=args.get("default_watchers", None),
)
return CommandResults(
readable_output=pretty_print_case_metadata(result),
outputs_prefix="Argus.Case",
outputs=result,
raw_response=result,
)
def delete_case_command(args: Dict[str, Any]) -> CommandResults:
case_id = args.get("case_id", None)
if not case_id:
raise ValueError("case id not specified")
result = delete_case(caseID=case_id)
return CommandResults(
readable_output=pretty_print_case_metadata(result, "Case deleted"),
outputs_prefix="Argus.Case",
outputs=result,
raw_response=result,
)
def delete_comment_command(args: Dict[str, Any]) -> CommandResults:
case_id = args.get("case_id", None)
comment_id = args.get("comment_id", None)
if not case_id:
raise ValueError("case id not specified")
if not comment_id:
raise ValueError("comment id not specified")
result = delete_comment(caseID=case_id, commentID=comment_id)
return CommandResults(
readable_output=pretty_print_comment(
result["data"], f"# #{case_id}: Deleted comment\n"
),
outputs_prefix="Argus.Comment",
outputs=result,
raw_response=result,
)
def download_attachment_command(args: Dict[str, Any]) -> Any:
case_id = args.get("case_id", None)
attachment_id = args.get("attachment_id", None)
if not case_id:
raise ValueError("case id not specified")
if not attachment_id:
raise ValueError("attachment id not specified")
result = download_attachment(caseID=case_id, attachmentID=attachment_id)
return fileResult(attachment_id, result.content)
def edit_comment_command(args: Dict[str, Any]) -> CommandResults:
case_id = args.get("case_id", None)
comment_id = args.get("comment_id", None)
comment = args.get("comment", None)
if not case_id:
raise ValueError("case id not specified")
if not comment_id:
raise ValueError("comment id not specified")
if not comment:
raise ValueError("comment not specified")
result = edit_comment(caseID=case_id, commentID=comment_id, comment=comment)
return CommandResults(
readable_output=pretty_print_comment(
result["data"], f"# #{case_id}: Updated comment\n"
),
outputs_prefix="Argus.Comment",
outputs=result,
raw_response=result,
)
def get_attachment_command(args: Dict[str, Any]) -> CommandResults:
case_id = args.get("case_id", None)
attachment_id = args.get("attachment_id", None)
if not case_id:
raise ValueError("case id not specified")
if not attachment_id:
raise ValueError("attachment id not specified")
result = get_attachment(caseID=case_id, attachmentID=attachment_id)
readable_output = f"# #{case_id}: attachment metadata\n"
readable_output += f"#### *{result['data']['addedByUser']['userName']} - {result['data']['addedTime']}*\n"
readable_output += f"{result['data']['name']} ({result['data']['mimeType']}, {result['data']['size']} bytes)\n\n"
readable_output += f"_id: {result['data']['id']}_\n"
return CommandResults(
readable_output=readable_output,
outputs_prefix="Argus.Attachments",
outputs=result,
raw_response=result,
)
def get_case_metadata_by_id_command(args: Dict[str, Any]) -> CommandResults:
case_id = args.get("case_id", None)
if not case_id:
raise ValueError("case id not specified")
result = get_case_metadata_by_id(
id=case_id, skipRedirect=args.get("skip_redirect", None)
)
return CommandResults(
readable_output=pretty_print_case_metadata(result),
outputs_prefix="Argus.Case",
outputs=result,
raw_response=result,
)
def list_case_attachments_command(args: Dict[str, Any]) -> CommandResults:
case_id = args.get("case_id", None)
if not case_id:
raise ValueError("case_id not specified")
result = list_case_attachments(
caseID=case_id, limit=args.get("limit", None), offset=args.get("offset", None)
)
readable_output = f"# #{case_id}: Case attachments\n"
for attachment in result["data"]:
readable_output += f"#### *{attachment['addedByUser']['userName']} - {attachment['addedTime']}*\n"
readable_output += f"{attachment['name']} ({attachment['mimeType']}, {attachment['size']} kb)\n\n"
readable_output += f"_id: {attachment['id']}_\n"
readable_output += "* * *\n"
return CommandResults(
readable_output=readable_output,
outputs_prefix="Argus.Attachments",
outputs=result,
raw_response=result,
)
def list_case_tags_command(args: Dict[str, Any]) -> CommandResults:
case_id = args.get("case_id", None)
if not case_id:
raise ValueError("case_id not specified")
result = list_case_tags(
caseID=case_id, limit=args.get("limit", None), offset=args.get("offset", None)
)
headers = ["key", "value", "addedTime", "id"]
readable_output = tableToMarkdown(
f"#{case_id}: Tags", result["data"], headers=headers
)
return CommandResults(
readable_output=readable_output,
outputs_prefix="Argus.Tags",
outputs=result,
raw_response=result,
)
def list_case_comments_command(args: Dict[str, Any]) -> CommandResults:
case_id = args.get("case_id", None)
sort_by = args.get("sort_by", None)
if not case_id:
raise ValueError("case_id not specified")
if sort_by:
sort_by = ["addedTimestamp"] if sort_by == "ascending" else ["-addedTimestamp"]
result = list_case_comments(
caseID=case_id,
beforeComment=args.get("before_comment", None),
afterComment=args.get("after_comment", None),
offset=args.get("offset", None),
limit=args.get("limit", None),
sortBy=sort_by,
)
return CommandResults(
readable_output=pretty_print_comments(
result["data"], f"# #{case_id}: Comments\n"
),
outputs_prefix="Argus.Comments",
outputs=result,
raw_response=result,
)
def remove_case_tag_by_id_command(args: Dict[str, Any]) -> CommandResults:
case_id = args.get("case_id", None)
tag_id = args.get("tag_id", None)
if not case_id:
raise ValueError("case id not specified")
if not tag_id:
raise ValueError("tag id not specified")
result = remove_case_tag_by_id(caseID=case_id, tagID=tag_id)
headers = ["key", "value", "addedTime", "id", "flags"]
readable_output = tableToMarkdown(
f"#{case_id}: Delete tags", result["data"], headers=headers
)
return CommandResults(
readable_output=readable_output,
outputs_prefix="Argus.Tags",
outputs=result,
raw_response=result,
)
def remove_case_tag_by_key_value_command(args: Dict[str, Any]) -> CommandResults:
case_id = args.get("case_id", None)
key = args.get("key", None)
value = args.get("value", None)
if not case_id:
raise ValueError("case id not specified")
if not key:
raise ValueError("key not specified")
if not value:
raise ValueError("value not specified")
result = remove_case_tag_by_key_value(caseID=case_id, tagKey=key, tagValue=value)
headers = ["key", "value", "addedTime", "id", "flags"]
readable_output = tableToMarkdown(
f"#{case_id}: Delete tags", result["data"], headers=headers
)
return CommandResults(
readable_output=readable_output,
outputs_prefix="Argus.Tags",
outputs=result,
raw_response=result,
)
def update_case_command(args: Dict[str, Any]) -> CommandResults:
case_id = args.get("case_id", None)
if not case_id:
raise ValueError("case id not specified")
result = update_case(
id=case_id,
subject=args.get("subject", None),
description=args.get("description", None),
status=args.get("status", None),
priority=args.get("priority", None),
category=args.get("category", None),
reporter=args.get("reporter", None),
assignedUser=args.get("assigned_user", None),
assignedTech=args.get("assigned_tech", None),
customerReference=args.get("customer_reference", None),
comment=args.get("comment", None),
originEmailAddress=args.get("origin_email_address", None),
hasEvents=args.get("has_events", None),
internalComment=args.get("internal_comment", None),
)
return CommandResults(
readable_output=pretty_print_case_metadata(result),
outputs_prefix="Argus.Case",
outputs=result,
raw_response=result,
)
def get_event_command(args: Dict[str, Any]) -> CommandResults:
event_type = args.get("type", None)
timestamp = args.get("timestamp", None)
customer_id = args.get("customer_id", None)
event_id = args.get("event_id", None)
if not event_type:
raise ValueError("event type not specified")
if not timestamp:
raise ValueError("timestamp not specified")
if not customer_id:
raise ValueError("customer id not specified")
if not event_id:
raise ValueError("event id not specified")
result = get_event_by_path(
type=event_type, timestamp=timestamp, customerID=customer_id, eventID=event_id
)
return CommandResults(
readable_output=tableToMarkdown(f"Event: {event_id}", result["data"]),
outputs_prefix="Argus.Event",
outputs=result,
raw_response=result,
)
def get_events_for_case_command(args: Dict[str, Any]) -> CommandResults:
case_id = args.get("case_id", None)
if not case_id:
raise ValueError("case id not specified")
result = get_events_for_case(
caseID=case_id, limit=args.get("limit", None), offset=args.get("offset", None)
)
return CommandResults(
readable_output=pretty_print_events(
dict(result), f"# #{case_id}: Associated Events\n"
),
outputs_prefix="Argus.Events",
outputs=result,
raw_response=result,
)
def find_aggregated_events_command(args: Dict[str, Any]) -> CommandResults:
# noinspection PyTypeChecker
result = find_aggregated_events(
skipFutureEvents=args.get("skip_future_events", None),
exclude=args.get("exclude", None),
locationID=argToList(args.get("location_id", None)),
severity=argToList(args.get("severity", None)),
customer=argToList(args.get("customer", None)),
alarmID=argToList(args.get("alarm_id", None)),
attackCategoryID=argToList(args.get("attack_category_id", None)),
sourceGeoCountry=argToList(args.get("source_geo_country", None)),
destinationGeoCountry=argToList(args.get("destination_geo_country", None)),
geoCountry=argToList(args.get("geo_country", None)),
properties=str_to_dict(args.get("properties", None)),
exactMatchProperties=args.get("exact_match_properties", None),
subCriteria=argToList(args.get("sub_criteria", None)),
signature=argToList(args.get("signature", None)),
lastUpdatedTimestamp=args.get("last_updated_timestamp", None),
indexStartTime=args.get("index_start_time", None),
indexEndTime=args.get("index_end_time", None),
destinationIP=argToList(args.get("destination_ip", None)),
sourceIP=argToList(args.get("source_ip", None)),
ip=argToList(args.get("ip", None)),
destinationPort=argToList(args.get("destination_port", None)),
sourcePort=argToList(args.get("source_port", None)),
port=argToList(args.get("port", None)),
minSeverity=args.get("min_severity", None),
maxSeverity=args.get("max_severity", None),
limit=args.get("limit", 25),
offset=args.get("offset", None),
includeDeleted=args.get("include_deleted", None),
minCount=args.get("min_count", None),
associatedCaseID=argToList(args.get("associated_case_id", None)),
sourceIPMinBits=args.get("source_ip_min_bits", None),
destinationIPMinBits=args.get("destination_ip_min_bits", None),
startTimestamp=args.get("start_timestamp", "-24hours"),
endTimestamp=args.get("end_timestamp", "now"),
sortBy=argToList(args.get("sort_by", None)),
includeFlags=argToList(args.get("include_flags", None)),
excludeFlags=argToList(args.get("exclude_flags", None)),
)
return CommandResults(
readable_output=pretty_print_events(dict(result), "# Find events\n"),
outputs_prefix="Argus.Events",
outputs=result,
raw_response=result,
)
def list_aggregated_events_command(args: Dict[str, Any]) -> CommandResults:
result = list_aggregated_events(
customerID=args.get("customer_id", None),
signature=args.get("signature", None),
ip=args.get("ip", None),
startTimestamp=args.get("start_timestamp", None),
endTimestamp=args.get("end_timestamp", None),
limit=args.get("limit", None),
offset=args.get("offset", None),
)
return CommandResults(
readable_output=pretty_print_events(dict(result), "# List Events\n"),
outputs_prefix="Argus.Events",
outputs=result,
raw_response=result,
)
def get_payload_command(args: Dict[str, Any]) -> CommandResults:
event_type = args.get("type", None)
timestamp = args.get("timestamp", None)
customer_id = args.get("customer_id", None)
event_id = args.get("event_id", None)
if not event_type:
raise ValueError("event type not specified")
if not timestamp:
raise ValueError("timestamp not specified")
if not customer_id:
raise ValueError("customer id not specified")
if not event_id:
raise ValueError("event id not specified")
result = get_payload(
type=event_type, timestamp=timestamp, customerID=customer_id, eventID=event_id
)
readable_output = "# Event payload\n"
readable_output += f"Event: {event_id}, type: {result['data']['type']}\n"
readable_output += result["data"]["payload"]
return CommandResults(
readable_output=readable_output,
outputs_prefix="Argus.Payload",
outputs=result,
raw_response=result,
)
def get_pcap_command(args: Dict[str, Any]) -> Any:
event_type = args.get("type", None)
timestamp = args.get("timestamp", None)
customer_id = args.get("customer_id", None)
event_id = args.get("event_id", None)
if not event_type:
raise ValueError("event type not specified")
if not timestamp:
raise ValueError("timestamp not specified")
if not customer_id:
raise ValueError("customer id not specified")
if not event_id:
raise ValueError("event id not specified")
result = get_pcap(
type=event_type, timestamp=timestamp, customerID=customer_id, eventID=event_id
)
return fileResult(f"{event_id}_pcap", result.content)
def find_nids_events_command(args: Dict[str, Any]) -> CommandResults:
# noinspection PyTypeChecker
result = find_n_i_d_s_events(
skipFutureEvents=args.get("skip_future_events", None),
exclude=args.get("exclude", None),
eventIdentifier=argToList(args.get("event_identifier", None)),
locationID=argToList(args.get("location_id", None)),
severity=argToList(args.get("severity", None)),
customer=argToList(args.get("customer", None)),
alarmID=argToList(args.get("alarm_id", None)),
attackCategoryID=argToList(args.get("attack_category_id", None)),
sourceGeoCountry=argToList(args.get("source_geo_country", None)),
destinationGeoCountry=argToList(args.get("destination_geo_country", None)),
geoCountry=argToList(args.get("geo_country", None)),
properties=str_to_dict(args.get("properties", None)),
exactMatchProperties=args.get("exact_match_properties", None),
sensorID=argToList(args.get("sensor_id", None)),
subCriteria=argToList(args.get("sub_criteria", None)),
signature=argToList(args.get("signature", None)),
lastUpdatedTimestamp=args.get("last_updated_timestamp", None),
indexStartTime=args.get("index_start_time", None),
indexEndTime=args.get("index_end_time", None),
destinationIP=argToList(args.get("destination_ip", None)),
sourceIP=argToList(args.get("source_ip", None)),
ip=argToList(args.get("ip", None)),
destinationPort=argToList(args.get("destination_port", None)),
sourcePort=argToList(args.get("source_port", None)),
port=argToList(args.get("port", None)),
minSeverity=args.get("min_severity", None),
maxSeverity=args.get("max_severity", None),
limit=args.get("limit", 25),
offset=args.get("offset", None),
includeDeleted=args.get("include_deleted", None),
startTimestamp=args.get("start_timestamp", "-24hours"),
endTimestamp=args.get("end_timestamp", "now"),
sortBy=argToList(args.get("sort_by", None)),
includeFlags=argToList(args.get("include_flags", None)),
excludeFlags=argToList(args.get("exclude_flags", None)),
)
return CommandResults(
readable_output=pretty_print_events(dict(result), "# Find NIDS Events\n"),
outputs_prefix="Argus.NIDS",
outputs=result,
raw_response=result,
)
def list_nids_events_command(args: Dict[str, Any]) -> CommandResults:
result = list_n_i_d_s_events(
customerID=args.get("customer_id", None),
signature=args.get("signature", None),
ip=args.get("ip", None),
startTimestamp=args.get("start_timestamp", None),
endTimestamp=args.get("end_timestamp", None),
limit=args.get("limit", None),
offset=args.get("offset", None),
)
return CommandResults(
readable_output=pretty_print_events(dict(result), "# List NIDS Events\n"),
outputs_prefix="Argus.NIDS",
outputs=result,
raw_response=result,
)
def search_records_command(args: Dict[str, Any]) -> CommandResults:
query = args.get("query", None)
if not query:
raise ValueError("query not specified")
# noinspection PyTypeChecker
result = search_records(
query=query,
aggregateResult=args.get("aggregate_result", None),
includeAnonymousResults=args.get("include_anonymous_results", None),
rrClass=argToList(args.get("rr_class", None)),
rrType=argToList(args.get("rr_type", None)),
customerID=argToList(args.get("customer_id", None)),
tlp=argToList((args.get("tlp", None))),
limit=args.get("limit", 25),
offset=args.get("offset", None),
)
return CommandResults(
readable_output=tableToMarkdown("PDNS records", result["data"]),
outputs_prefix="Argus.PDNS",
outputs=result,
raw_response=result,
)
def fetch_observations_for_domain_command(args: Dict[str, Any]) -> CommandResults:
fqdn = args.get("fqdn", None)
if not fqdn:
raise ValueError("fqdn not specified")
result = fetch_observations_for_domain(fqdn=fqdn)
return CommandResults(
readable_output=tableToMarkdown(
f'Domain observations for "{fqdn}"', result["data"]
),
outputs_prefix="Argus.ObservationsDomain",
outputs=result,
raw_response=result,
)
def fetch_observations_for_i_p_command(args: Dict[str, Any]) -> CommandResults:
ip = args.get("ip", None)
if not ip:
raise ValueError("ip not specified")
result = fetch_observations_for_i_p(ip=ip)
return CommandResults(
readable_output=tableToMarkdown(f'IP observations for "{ip}"', result["data"]),
outputs_prefix="Argus.ObservationsIP",
outputs=result,
raw_response=result,
)
""" MAIN FUNCTION """
def main() -> None:
logging.getLogger("argus_cli").setLevel("WARNING")
first_fetch_period = parse_first_fetch(
demisto.params().get("first_fetch", "-1 day")
)
set_argus_settings(
demisto.params().get("api_key"),
demisto.params().get("api_url"),
handle_proxy(),
demisto.params().get("insecure", None),
)
demisto.debug(f"Command being called is {demisto.command()}")
try:
if demisto.command() == "test-module":
# This is the call made when pressing the integration Test button.
return_results(test_module_command())
elif demisto.command() == "fetch-incidents":
# Set and define the fetch incidents command to run after activated via integration settings.
next_run, incidents = fetch_incidents(
last_run=demisto.getLastRun(),
first_fetch_period=first_fetch_period,
limit=demisto.params().get("max_fetch", 25),
min_severity=demisto.params().get("min_severity", "low"),
)
demisto.setLastRun(next_run)
demisto.incidents(incidents)
elif demisto.command() == "argus-add-case-tag":
return_results(add_case_tag_command(demisto.args()))
elif demisto.command() == "argus-add-comment":
return_results(add_comment_command(demisto.args()))
elif demisto.command() == "argus-advanced-case-search":
return_results(advanced_case_search_command(demisto.args()))
elif demisto.command() == "argus-close-case":
return_results(close_case_command(demisto.args()))
elif demisto.command() == "argus-create-case":
return_results(create_case_command(demisto.args()))
elif demisto.command() == "argus-delete-case":
return_results(delete_case_command(demisto.args()))
elif demisto.command() == "argus-delete-comment":
return_results(delete_comment_command(demisto.args()))
elif demisto.command() == "argus-download-attachment":
return_results(download_attachment_command(demisto.args()))
elif demisto.command() == "argus-edit-comment":
return_results(edit_comment_command(demisto.args()))
elif demisto.command() == "argus-get-attachment":
return_results(get_attachment_command(demisto.args()))
elif demisto.command() == "argus-get-case-metadata-by-id":
return_results(get_case_metadata_by_id_command(demisto.args()))
elif demisto.command() == "argus-list-case-attachments":
return_results(list_case_attachments_command(demisto.args()))
elif demisto.command() == "argus-list-case-tags":
return_results(list_case_tags_command(demisto.args()))
elif demisto.command() == "argus-list-case-comments":
return_results(list_case_comments_command(demisto.args()))
elif demisto.command() == "argus-remove-case-tag-by-id":
return_results(remove_case_tag_by_id_command(demisto.args()))
elif demisto.command() == "argus-remove-case-tag-by-key-value":
return_results(remove_case_tag_by_key_value_command(demisto.args()))
elif demisto.command() == "argus-update-case":
return_results(update_case_command(demisto.args()))
elif demisto.command() == "argus-get-event":
return_results(get_event_command(demisto.args()))
elif demisto.command() == "argus-get-events-for-case":
return_results(get_events_for_case_command(demisto.args()))
elif demisto.command() == "argus-find-aggregated-events":
return_results(find_aggregated_events_command(demisto.args()))
elif demisto.command() == "argus-list-aggregated-events":
return_results(list_aggregated_events_command(demisto.args()))
elif demisto.command() == "argus-get-payload":
return_results(get_payload_command(demisto.args()))
elif demisto.command() == "argus-get-pcap":
return_results(get_pcap_command(demisto.args()))
elif demisto.command() == "argus-find-nids-events":
return_results(find_nids_events_command(demisto.args()))
elif demisto.command() == "argus-list-nids-events":
return_results(list_nids_events_command(demisto.args()))
elif demisto.command() == "argus-pdns-search-records":
return_results(search_records_command(demisto.args()))
elif demisto.command() == "argus-fetch-observations-for-domain":
return_results(fetch_observations_for_domain_command(demisto.args()))
elif demisto.command() == "argus-fetch-observations-for-ip":
return_results(fetch_observations_for_i_p_command(demisto.args()))
# Log exceptions and return errors
except Exception as e:
demisto.error(traceback.format_exc()) # print the traceback
return_error(
f"Failed to execute {demisto.command()} command.\nError:\n{str(e)}"
)
""" ENTRY POINT """
if __name__ in ("__main__", "__builtin__", "builtins"):
main()
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src/GUI/__init__.py | shulip/ShoppingMallSystem | 0 | 140095 | <gh_stars>0
#!/usr/bin/env python
# -*- coding:utf-8 -*-
from .LCEOWindow import *
from .LProprietorWindow import *
from .LLoginWindow import *
from .LManagerWindow import *
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src/make_notebooks/__init__.py | marskar/make_notebooks | 0 | 150508 | # -*- coding: utf-8 -*-
"""Top-level package for Make Notebooks."""
__author__ = """<NAME>"""
__version__ = '0.0.1'
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tests/test_ms_sql_server.py | changrunner/zeppos_microsoft_sql_server | 0 | 37450 | import unittest
from zeppos_microsoft_sql_server.ms_sql_server import MsSqlServer
import pandas as pd
import pyodbc
import os
class TestTheProjectMethods(unittest.TestCase):
def test_constructor_methods(self):
self.assertEqual("<class 'zeppos_microsoft_sql_server.ms_sql_server.MsSqlServer'>", str(type(MsSqlServer(""))))
def test_execute_sql_method(self):
ms_sql = MsSqlServer(
"DRIVER={ODBC Driver 13 for SQL Server}; SERVER=localhost\sqlexpress; DATABASE=master; Trusted_Connection=yes;")
self.assertEqual(True, ms_sql.execute_sql("drop table if exists #tmp"))
def test_drop_table_method(self):
ms_sql = MsSqlServer(
"DRIVER={ODBC Driver 13 for SQL Server}; SERVER=localhost\sqlexpress; DATABASE=master; Trusted_Connection=yes;")
self.assertEqual(True, ms_sql.drop_table("dbo", "table_does_not_exist"))
def test_create_table_method(self):
ms_sql = MsSqlServer(
"DRIVER={ODBC Driver 13 for SQL Server}; SERVER=localhost\sqlexpress; DATABASE=master; Trusted_Connection=yes;")
df = pd.DataFrame({'column_1': [3600],
'column_2': ['12'],
'column_3': [23]
}, columns=['column_1', 'column_2', 'column_3'])
df['column_1'] = df['column_1'].astype(object)
df['column_2'] = df['column_2'].astype(str)
df['column_3'] = df['column_3'].astype(int)
ms_sql.drop_table("dbo", "table_does_not_exist")
self.assertEqual(True, ms_sql.create_table("dbo", "table_does_not_exist", df))
def test_does_table_exists(self):
ms_sql = MsSqlServer(
"DRIVER={ODBC Driver 13 for SQL Server}; SERVER=localhost\sqlexpress; DATABASE=master; Trusted_Connection=yes;")
self.assertEqual(False, ms_sql.does_table_exists('dbo', 'test123456123'))
def test_save_dataframe_by_record_method(self):
ms_sql = MsSqlServer(
"DRIVER={ODBC Driver 13 for SQL Server}; SERVER=localhost\sqlexpress; DATABASE=master; Trusted_Connection=yes;")
ms_sql.drop_table("dbo", "test_table")
ms_sql.execute_sql("create table dbo.test_table (column_1 int)")
# test
df_actual = pd.DataFrame({'column_1': [3600]}, columns=['column_1'])
self.assertEqual(True, ms_sql.save_dataframe_by_record(df_actual, "dbo", "test_table"))
self.assertEqual(1, pd.read_sql("SELECT TOP 1 column_1 FROM dbo.test_table", pyodbc.connect(
"DRIVER={ODBC Driver 13 for SQL Server}; SERVER=localhost\sqlexpress; DATABASE=master; Trusted_Connection=yes;")).shape[0])
def test_save_dataframe_in_bulk_method(self):
ms_sql = MsSqlServer(
"DRIVER={ODBC Driver 13 for SQL Server}; SERVER=localhost\sqlexpress; DATABASE=master; Trusted_Connection=yes;")
# test
df_actual = pd.DataFrame({'column_1': [3600]}, columns=['column_1'])
self.assertEqual(True, ms_sql.save_dataframe_in_bulk(df_actual, "dbo", "test_table"))
self.assertEqual(1, pd.read_sql("SELECT TOP 1 column_1 FROM dbo.test_table", pyodbc.connect(
"DRIVER={ODBC Driver 13 for SQL Server}; SERVER=localhost\sqlexpress; DATABASE=master; Trusted_Connection=yes;")).shape[
0])
def test_1_read_data_into_dataframe_method(self):
ms_sql = MsSqlServer(
"DRIVER={ODBC Driver 13 for SQL Server}; SERVER=localhost\sqlexpress; DATABASE=master; Trusted_Connection=yes;")
self.assertEqual(1,
ms_sql.read_data_into_dataframe("SELECT TOP 1 COLUMN_NAME FROM INFORMATION_SCHEMA.COLUMNS").shape[0])
def test_2_read_data_into_dataframe_method(self):
ms_sql = MsSqlServer(
"DRIVER={ODBC Driver 13 for SQL Server}; SERVER=localhost\sqlexpress; DATABASE=master; Trusted_Connection=yes;")
self.assertEqual(1, ms_sql.read_data_into_dataframe("""
SET NOCOUNT ON; -- This has to be here.
DROP TABLE IF EXISTS #tmp
SELECT DISTINCT TABLE_SCHEMA, TABLE_NAME into #tmp
FROM INFORMATION_SCHEMA.COLUMNS
SELECT count(1) as RECORD_COUNT from #tmp
""").shape[0])
def test_extract_to_csv_method(self):
ms_sql = MsSqlServer(
"DRIVER={ODBC Driver 13 for SQL Server}; SERVER=localhost\sqlexpress; DATABASE=master; Trusted_Connection=yes;")
csv_file = ms_sql.extract_to_csv("select table_schema, table_name from information_schema.tables", r"c:\temp", "test.csv")
self.assertEqual(True, os.path.exists(csv_file.full_file_name))
df = pd.read_csv(csv_file.full_file_name, sep="|")
self.assertGreater(df.shape[0], 0)
os.remove(csv_file.full_file_name)
if __name__ == '__main__':
unittest.main()
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oommfc/oommf/oommf.py | spinachslayer420/MSE598-SAF-Project | 0 | 179634 | import os
import abc
import sys
import time
import datetime
import logging
import shutil
import oommfc as oc
import subprocess as sp
import ubermagutil as uu
import micromagneticmodel as mm
log = logging.getLogger(__name__)
_cached_oommf_runner = None
class OOMMFRunner(metaclass=abc.ABCMeta):
"""Abstract class for running OOMMF.
"""
def call(self, argstr, need_stderr=False):
"""Calls OOMMF by passing ``argstr`` to OOMMF.
Parameters
----------
argstr : str
Argument string passed to OOMMF.
need_stderr : bool
If ``need_stderr=True``, standard error is captured. Defaults to
``False``.
Raises
------
RuntimeError
If an error occured.
Returns
-------
int
When the OOMMF run was successful, ``0`` is returned.
Examples
--------
1. Getting OOMMF runner automatically and calling it.
>>> import oommfc as oc
...
>>> runner = oc.oommf.get_oommf_runner()
>>> runner.call(argstr='+version')
Running OOMMF...
CompletedProcess(...)
"""
now = datetime.datetime.now()
timestamp = '{}/{:02d}/{:02d} {:02d}:{:02d}'.format(now.year,
now.month,
now.day,
now.hour,
now.minute)
print(f'Running OOMMF ({self.__class__.__name__}) [{timestamp}]... ',
end='')
tic = time.time()
res = self._call(argstr=argstr, need_stderr=need_stderr)
self._kill() # kill OOMMF (mostly needed on Windows)
toc = time.time()
seconds = '({:0.1f} s)'.format(toc - tic)
print(seconds) # append seconds to the previous print.
if res.returncode != 0:
if sys.platform != 'win32':
# Only on Linux and MacOS - on Windows we do not get stderr and
# stdout.
stderr = res.stderr.decode('utf-8', 'replace')
stdout = res.stdout.decode('utf-8', 'replace')
cmdstr = ' '.join(res.args)
print('OOMMF error:')
print(f'\tcommand: {cmdstr}')
print(f'\tstdout: {cmdstr}')
print(f'\tstderr: {stderr}')
print('\n')
raise RuntimeError('Error in OOMMF run.')
return res
@abc.abstractmethod
def _call(self, argstr, need_stderr=False):
"""This method should be implemented in subclass.
"""
pass # pragma: no cover
@abc.abstractmethod
def _kill(self, targets=('all',)):
"""This method should be implemented in subclass.
"""
pass # pragma: no cover
@abc.abstractmethod
def errors(self):
"""Returns the content of ``boxsii.errors`` OOMMF file.
Returns
-------
str
``boxsii.errors`` OOMMF file.
"""
pass # pragma: no cover
def version(self):
"""Returns the OOMMF version.
Returns
-------
str
OOMMF version.
Examples
--------
1. Getting OOMMF version.
>>> import oommfc as oc
...
>>> runner = oc.oommf.get_oommf_runner()
>>> runner.version()
Running OOMMF...
'...'
"""
res = self.call(argstr='+version', need_stderr=True)
return res.stderr.decode('utf-8').split('oommf.tcl')[-1].strip()
def platform(self):
"""Returns platform seen by OOMMF.
Returns
-------
str
Platform.
Examples
--------
1. Getting platform.
>>> import oommfc as oc
...
>>> runner = oc.oommf.get_oommf_runner()
>>> runner.platform()
Running OOMMF...
'...'
"""
res = self.call(argstr='+platform', need_stderr=True)
return res.stderr.decode('utf-8')
@uu.inherit_docs
class TclOOMMFRunner(OOMMFRunner):
"""OOMMF runner using path to ``oommf.tcl``.
Parameters
----------
oommf_tcl: str
Path to ``oommf.tcl``file.
"""
def __init__(self, oommf_tcl):
self.oommf_tcl = oommf_tcl # a path to oommf.tcl
def _call(self, argstr, need_stderr=False):
cmd = ['tclsh', self.oommf_tcl, 'boxsi', '+fg',
argstr, '-exitondone', '1']
# Not clear why we cannot get stderr and stdout on win32. Calls to
# OOMMF get stuck.
stdout = stderr = sp.PIPE
if sys.platform == 'win32' and not need_stderr:
stdout = stderr = None # pragma: no cover
return sp.run(cmd, stdout=stdout, stderr=stderr)
def _kill(self, targets=['all']):
sp.run(['tclsh', self.oommf_tcl, 'killoommf'] + targets)
def errors(self):
errors_file = os.path.join(os.path.dirname(self.oommf_tcl),
'boxsi.errors')
with open(errors_file, 'r') as f:
errors = f.read()
return errors
@uu.inherit_docs
class ExeOOMMFRunner(OOMMFRunner):
"""OOMMF runner using OOMMF executable, which can be found on $PATH.
Parameters
----------
oommf_exe: str
Name of the OOMMF executable. Defaults to ``oommf``.
"""
def __init__(self, oommf_exe='oommf'):
self.oommf_exe = oommf_exe
def _call(self, argstr, need_stderr=False):
# Here we might need stderr = stdot = None like in
# TclOOMMFRunner for Windows. This is not clear because we
# never use ExeOOMMFRunner on Windows.
cmd = [self.oommf_exe, 'boxsi', '+fg', argstr, '-exitondone', '1']
return sp.run(cmd, stdout=sp.PIPE, stderr=sp.PIPE)
def _kill(self, targets=['all']):
sp.run([self.oommf_exe, 'killoommf'] + targets)
def errors(self):
try:
errors_file = os.path.join(
os.path.dirname(shutil.which(self.oommf_exe)),
'..', 'opt', 'oommf', 'boxsi.errors')
with open(errors_file, 'r') as f:
errors = f.read()
return errors
except FileNotFoundError:
msg = 'boxsi.errors cannot be retrieved.'
raise EnvironmentError(msg)
@uu.inherit_docs
class DockerOOMMFRunner(OOMMFRunner):
"""OOMMF runner using Docker.
Parameters
----------
docker_exe: str
Docker executable. Defaults to ``docker``.
image: str
Docker image on DockerHub. Defaults to ``ubermag/oommf``.
"""
def __init__(self, docker_exe='docker', image='ubermag/oommf'):
self.docker_exe = docker_exe
self.image = image
def _call(self, argstr, need_stderr=False):
cmd = [self.docker_exe, 'run', '-v', os.getcwd()+':/io',
self.image, '/bin/bash', '-c',
('tclsh /usr/local/oommf/oommf/oommf.tcl boxsi '
'+fg {} -exitondone 1').format(argstr)]
return sp.run(cmd, stdout=sp.PIPE, stderr=sp.PIPE)
def _kill(self, targets=('all',)):
# There is no need to kill OOMMF when run inside docker.
pass
def errors(self):
msg = 'boxsi.errors cannot be retrieved from Docker container.'
raise EnvironmentError(msg)
def get_oommf_runner(use_cache=True, envvar='OOMMFTCL',
oommf_exe='oommf', docker_exe='docker'):
"""Find the best available way to run OOMMF.
Returns an ``oommfc.oommf.OOMMFRunner`` object, or raises
``EnvironmentError`` if no suitable method is found.
Parameters
----------
use_cache : bool
The first call to this function will determine the best way to run OOMMF
and cache it. Normally, subsequent calls will return the ``OOMMFRunner``
object from the cache. Setting this parameter to ``False`` will cause it
to check for available methods again. Defaults to ``True``.
envvar : str
Name of the environment variable containing the path to ``oommf.tcl``.
Defaults to ``'OOMMFTCL'``.
oommf_exe : str
The name or path of the executable ``oommf`` command. Defaults to
``'oommf'``.
docker_exe : str
The name or path of the docker command. Defaults to ``'docker'``.
Returns
-------
oommfc.oommf.OOMMFRunner
An OOMMF runner.
Raises
------
EnvironmentError
If no OOMMF can be found on host.
Examples
--------
1. Getting OOMMF Runner.
>>> import oommfc as oc
...
>>> runner = oc.oommf.get_oommf_runner()
>>> isinstance(runner, oc.oommf.OOMMFRunner)
True
"""
global _cached_oommf_runner
if use_cache and (_cached_oommf_runner is not None):
return _cached_oommf_runner
# Check for the OOMMFTCL environment variable pointing to oommf.tcl.
oommf_tcl = os.environ.get(envvar, None)
if oommf_tcl is not None:
cmd = ['tclsh', oommf_tcl, 'boxsi',
'+fg', '+version', '-exitondone', '1']
try:
res = sp.run(cmd, stdout=sp.PIPE, stderr=sp.PIPE)
except FileNotFoundError:
log.warning('oommf.tcl was not found.')
else:
if res.returncode:
log.warning('OOMMFTCL is set, but OOMMF could not be run.\n'
f'stdout:\n{res.stdout}\n'
f'stderr:\n{res.stderr}')
else:
_cached_oommf_runner = TclOOMMFRunner(oommf_tcl)
return _cached_oommf_runner
# OOMMF is installed via conda and oommf.tcl is in opt/oommf (Windows).
# This would probably also work on MacOS/Linux, but on these operating
# systems, when installed via conda, we use 'oommf' executable.
if sys.platform == 'win32' and \
os.path.isdir(os.path.join(sys.prefix, 'conda-meta')):
oommf_tcl = os.path.join(sys.prefix, 'opt', 'oommf', 'oommf.tcl')
if os.path.isfile(oommf_tcl):
_cached_oommf_runner = TclOOMMFRunner(oommf_tcl)
return _cached_oommf_runner
# OOMMF available as an executable - in a conda env on Mac/Linux, or oommf
# installed separately.
oommf_exe = shutil.which(oommf_exe)
if oommf_exe:
_cached_oommf_runner = ExeOOMMFRunner(oommf_exe)
return _cached_oommf_runner
# Check for docker to run OOMMF in a docker image.
cmd = [docker_exe, 'images']
try:
res = sp.run(cmd, stdout=sp.PIPE, stderr=sp.PIPE)
except FileNotFoundError:
log.warning('Docker was not found.')
else:
if res.returncode:
log.warning('Error running docker\n'
f'stdout:\n{res.stdout}\n'
f'stderr:\n{res.stderr}')
else:
_cached_oommf_runner = DockerOOMMFRunner(docker_exe=docker_exe,
image='ubermag/oommf')
return _cached_oommf_runner
# If OOMMFRunner was not returned up to this point, we raise an
# exception.
raise EnvironmentError('Cannot find OOMMF.')
def status():
"""Run a macrospin example for 1 ps through oommfc and print the OOMMF
status.
Returns
-------
int
If ``0``, the OOMMF is found and running. Otherwise, ``1`` is returned.
Examples
--------
1. Checking the OOMMF status.
>>> import oommfc as oc
...
>>> oc.oommf.status()
Running OOMMF...
OOMMF found and running.
0
"""
system = mm.examples.macrospin()
try:
td = oc.TimeDriver()
td.drive(system, t=1e-12, n=1)
print('OOMMF found and running.')
return 0
except (EnvironmentError, RuntimeError):
print('Cannot find OOMMF.')
return 1
def overhead():
"""Run a macrospin example for 1 ps through ``oommfc`` and directly and
return the difference in run times.
Returns
-------
float
The time difference (overhead) between running OOMMF though ``oommfc``
and directly.
Examples
--------
1. Getting the overhead time.
>>> import oommfc as oc
...
>>> isinstance(oc.oommf.overhead(), float)
Running OOMMF...
True
"""
# Running OOMMF through oommfc.
system = mm.examples.macrospin()
td = oc.TimeDriver()
oommfc_start = time.time()
td.drive(system, t=1e-12, n=1, save=True, overwrite=True)
oommfc_stop = time.time()
oommfc_time = oommfc_stop - oommfc_start
# Running OOMMF directly.
oommf_runner = get_oommf_runner()
mifpath = os.path.realpath(os.path.join(system.name,
'drive-0',
'macrospin.mif'))
oommf_start = time.time()
oommf_runner.call(mifpath)
oommf_stop = time.time()
oommf_time = oommf_stop - oommf_start
oc.delete(system)
return oommfc_time - oommf_time
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__init__.py | allan920693/PTT-Photo-Crawler-with-Scrapy | 0 | 1600971 | # coding=utf-8
# This package will contain the spiders of your Scrapy project
#
# Please refer to the documentation for information on how to create and manage
# your spiders.
import scrapy
import logging
from scrapy.http import FormRequest
import datetime
from ptt.items import PostItem
import re
class PTTSpider(scrapy.Spider):
name = 'ptt'
allowed_domains = ['ptt.cc']
start_urls = ('https://www.ptt.cc/bbs/Gossiping/index.html', )
_retries = 0
MAX_RETRY = 1
_pages = 0
MAX_PAGES = 4 #Maxixum number of crawled pages
total_score_threshold = 20 # Threshold of push score (for filtering)
keyword = [u'政治',u'藍營',u'綠營',u'總統','立法',u'行政',u'執政',] # Please specify your keyword
keyword_count_threshold = 1 # Threshold of keyword occurence (for filtering)
def parse(self, response):
if len(response.xpath('//div[@class="over18-notice"]')) > 0:
if self._retries < PTTSpider.MAX_RETRY:
self._retries += 1
logging.warning('retry {} times...'.format(self._retries))
yield FormRequest.from_response(response,
formdata={'yes': 'yes'},
callback=self.parse)
else:
logging.warning('!!!!!!!!!!!!!!!!!you cannot pass!!!!!!!!!!!!!!')
else:
filename = response.url.split('/')[-2] + '.html'
with open(filename, 'wb') as f:
f.write(response.body)
self._pages += 1
for href in response.css('.r-ent > div.title > a::attr(href)'):
url = response.urljoin(href.extract())
yield scrapy.Request(url, callback=self.parse_post)
if self._pages < PTTSpider.MAX_PAGES:
next_page = response.xpath(u'//div[@id="action-bar-container"]//a[contains(text(), "上頁")]/@href')
logging.warning(next_page)
logging.warning('231')
if next_page:
url = response.urljoin(next_page[0].extract())
yield scrapy.Request(url, self.parse)
else:
logging.warning('no next page')
else:
logging.warning('max pages reached')
def parse_post(self, response):
item = PostItem()
# item['title'] = response.xpath(
# '//meta[@property="og:title"]/@content')[0].extract()
# item['author'] = response.xpath(
# u'//div[@class="article-metaline"]/span[text()="作者"]/following-sibling::span[1]/text()')[
# 0].extract().split(' ')[0]
# datetime_str = response.xpath(
# u'//div[@class="article-metaline"]/span[text()="時間"]/following-sibling::span[1]/text()')[
# 0].extract()
# item['date'] = datetime.datetime.strptime(datetime_str, '%a %b %d %H:%M:%S %Y')
# item['content'] = response.xpath('//div[@id="main-content"]/text()')[0].extract()
comments = []
total_score = 0
for comment in response.xpath('//div[@class="push"]'):
push_tag = comment.css('span.push-tag::text')[0].extract()
push_user = comment.css('span.push-userid::text')[0].extract()
push_content = comment.css('span.push-content::text')[0].extract()
if u'推' in push_tag:
score = 1
elif u'噓' in push_tag:
score = -1
else:
score = 0
total_score += score
comments.append({'user': push_user,
'content': push_content,
'score': score})
# item['comments'] = comments
# item['score'] = total_score
# item['url'] = response.url
if total_score >= self.total_score_threshold:
check_content = response.xpath('//div[@id="main-content"]/text()')[
0].extract()
keyword_count = 0
for i in range(0,len(self.keyword),1):
if re.search(self.keyword[i],check_content):
keyword_count+=1
else:
continue
if keyword_count >= self.keyword_count_threshold:
incontent = response.xpath('//div[@id="main-content"]')
for incontent_href in incontent.css('a::attr(href)'):
if re.search('.png',incontent_href.extract()):
item['incontent_url'] = incontent_href.extract()
item['incontent_url_type'] = '.png'
if re.search('.jpg',incontent_href.extract()):
item['incontent_url'] = incontent_href.extract()
item['incontent_url_type'] = '.jpg'
yield item
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] |
tests/test_utilities/test_csvgrep.py | diraol/csvkit | 0 | 1613485 | <filename>tests/test_utilities/test_csvgrep.py
#!/usr/bin/env python
import StringIO
import unittest
from csvkit import CSVKitReader
from csvkit.utilities.csvgrep import CSVGrep
from csvkit.exceptions import ColumnIdentifierError, RequiredHeaderError
class TestCSVGrep(unittest.TestCase):
def test_match(self):
args = ['-c', '1', '-m', '1', 'examples/dummy.csv']
output_file = StringIO.StringIO()
utility = CSVGrep(args, output_file)
utility.main()
input_file = StringIO.StringIO(output_file.getvalue())
reader = CSVKitReader(input_file)
self.assertEqual(reader.next(), ['a', 'b', 'c'])
self.assertEqual(reader.next(), ['1', '2', '3'])
def test_no_match(self):
args = ['-c', '1', '-m', 'NO MATCH', 'examples/dummy.csv']
output_file = StringIO.StringIO()
utility = CSVGrep(args, output_file)
utility.main()
input_file = StringIO.StringIO(output_file.getvalue())
reader = CSVKitReader(input_file)
self.assertEqual(reader.next(), ['a', 'b', 'c'])
def test_invert_match(self):
args = ['-c', '1', '-i', '-m', 'NO MATCH', 'examples/dummy.csv']
output_file = StringIO.StringIO()
utility = CSVGrep(args, output_file)
utility.main()
input_file = StringIO.StringIO(output_file.getvalue())
reader = CSVKitReader(input_file)
self.assertEqual(reader.next(), ['a', 'b', 'c'])
self.assertEqual(reader.next(), ['1', '2', '3'])
def test_re_match(self):
args = ['-c', '3', '-r', '^(3|9)$', 'examples/dummy.csv']
output_file = StringIO.StringIO()
utility = CSVGrep(args, output_file)
utility.main()
input_file = StringIO.StringIO(output_file.getvalue())
reader = CSVKitReader(input_file)
self.assertEqual(reader.next(), ['a', 'b', 'c'])
self.assertEqual(reader.next(), ['1', '2', '3'])
def test_string_match(self):
args = ['-c', '1', '-m', 'ILLINOIS', 'examples/realdata/FY09_EDU_Recipients_by_State.csv']
output_file = StringIO.StringIO()
utility = CSVGrep(args, output_file)
utility.main()
input_file = StringIO.StringIO(output_file.getvalue())
reader = CSVKitReader(input_file)
self.assertEqual(reader.next(), ['State Name', 'State Abbreviate', 'Code', 'Montgomery GI Bill-Active Duty', 'Montgomery GI Bill- Selective Reserve', 'Dependents\' Educational Assistance', 'Reserve Educational Assistance Program', 'Post-Vietnam Era Veteran\'s Educational Assistance Program', 'TOTAL', ''])
self.assertEqual(reader.next(), ['ILLINOIS', 'IL', '17', '15,659', '2,491', '2,025', '1,770', '19', '21,964', ''])
def test_invalid_column(self):
args = ['-c', '0', '-m', '1', 'examples/dummy.csv']
output_file = StringIO.StringIO()
utility = CSVGrep(args, output_file)
self.assertRaises(ColumnIdentifierError, utility.main)
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pyspark/example/spark_core/4.7_spark_prog.py | chiliangpi/hellobi | 53 | 11562 | <reponame>chiliangpi/hellobi
import os
import numpy as np
import sys
import logging
LOG_PATH = os.environ['log']
spark_home = os.environ['SPARK_HOME']
sys.path.insert(0, os.path.join(spark_home, 'python'))
sys.path.insert(0, os.path.join(spark_home, 'python/lib/py4j-0.10.4-src.zip'))
from pyspark.sql import SparkSession
spark = SparkSession.builder.appName("test") \
.getOrCreate()
logger = logging.getLogger(__name__)
logger.addHandler(logging.FileHandler(LOG_PATH))
def main(*args):
top = int(args[0][0])
data = spark.read.csv("hdfs:///tmp/ratings.csv", sep = ',', header= True)
result = (data
.groupBy("movieid")
.agg({'rating': 'mean'})
.withColumnRenamed("avg(rating)", "avg_ratings")
.dropna()
.orderBy(['avg_ratings'], ascending=[0])
.limit(top))
logger.info("result: {}".format(result.toPandas()))
#spark.stop()
if __name__ == '__main__':
logging.basicConfig(format='[%(levelname)s] %(asctime)s %(message)s',
datefmt='%Y-%m-%d %H:%M:%S',
level=logging.INFO)
main(sys.argv[1:])
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content_interactions_stats/migrations/0001_initial.py | aaboffill/django-content-interactions | 0 | 106224 | <reponame>aaboffill/django-content-interactions<filename>content_interactions_stats/migrations/0001_initial.py<gh_stars>0
# -*- coding: utf-8 -*-
from south.utils import datetime_utils as datetime
from south.db import db
from south.v2 import SchemaMigration
from django.db import models
class Migration(SchemaMigration):
def forwards(self, orm):
# Adding model 'Stats'
db.create_table(u'content_interactions_stats_stats', (
(u'id', self.gf('django.db.models.fields.AutoField')(primary_key=True)),
('likes', self.gf('django.db.models.fields.IntegerField')(default=0)),
('ratings', self.gf('django.db.models.fields.IntegerField')(default=0)),
('rating_5_count', self.gf('django.db.models.fields.IntegerField')(default=0)),
('rating_4_count', self.gf('django.db.models.fields.IntegerField')(default=0)),
('rating_3_count', self.gf('django.db.models.fields.IntegerField')(default=0)),
('rating_2_count', self.gf('django.db.models.fields.IntegerField')(default=0)),
('rating_1_count', self.gf('django.db.models.fields.IntegerField')(default=0)),
('rating', self.gf('django.db.models.fields.DecimalField')(default=0, max_digits=2, decimal_places=1)),
('favorite_marks', self.gf('django.db.models.fields.IntegerField')(default=0)),
('shares', self.gf('django.db.models.fields.IntegerField')(default=0)),
('denounces', self.gf('django.db.models.fields.IntegerField')(default=0)),
('visits', self.gf('django.db.models.fields.IntegerField')(default=0)),
('content_type', self.gf('django.db.models.fields.related.ForeignKey')(related_name='content_type_set_for_stats', to=orm['contenttypes.ContentType'])),
('object_pk', self.gf('django.db.models.fields.IntegerField')()),
))
db.send_create_signal(u'content_interactions_stats', ['Stats'])
# Adding unique constraint on 'Stats', fields ['content_type', 'object_pk']
db.create_unique(u'content_interactions_stats_stats', ['content_type_id', 'object_pk'])
def backwards(self, orm):
# Removing unique constraint on 'Stats', fields ['content_type', 'object_pk']
db.delete_unique(u'content_interactions_stats_stats', ['content_type_id', 'object_pk'])
# Deleting model 'Stats'
db.delete_table(u'content_interactions_stats_stats')
models = {
u'content_interactions_stats.stats': {
'Meta': {'unique_together': "(('content_type', 'object_pk'),)", 'object_name': 'Stats'},
'content_type': ('django.db.models.fields.related.ForeignKey', [], {'related_name': "'content_type_set_for_stats'", 'to': u"orm['contenttypes.ContentType']"}),
'denounces': ('django.db.models.fields.IntegerField', [], {'default': '0'}),
'favorite_marks': ('django.db.models.fields.IntegerField', [], {'default': '0'}),
u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
'likes': ('django.db.models.fields.IntegerField', [], {'default': '0'}),
'object_pk': ('django.db.models.fields.IntegerField', [], {}),
'rating': ('django.db.models.fields.DecimalField', [], {'default': '0', 'max_digits': '2', 'decimal_places': '1'}),
'rating_1_count': ('django.db.models.fields.IntegerField', [], {'default': '0'}),
'rating_2_count': ('django.db.models.fields.IntegerField', [], {'default': '0'}),
'rating_3_count': ('django.db.models.fields.IntegerField', [], {'default': '0'}),
'rating_4_count': ('django.db.models.fields.IntegerField', [], {'default': '0'}),
'rating_5_count': ('django.db.models.fields.IntegerField', [], {'default': '0'}),
'ratings': ('django.db.models.fields.IntegerField', [], {'default': '0'}),
'shares': ('django.db.models.fields.IntegerField', [], {'default': '0'}),
'visits': ('django.db.models.fields.IntegerField', [], {'default': '0'})
},
u'contenttypes.contenttype': {
'Meta': {'ordering': "('name',)", 'unique_together': "(('app_label', 'model'),)", 'object_name': 'ContentType', 'db_table': "'django_content_type'"},
'app_label': ('django.db.models.fields.CharField', [], {'max_length': '100'}),
u'id': ('django.db.models.fields.AutoField', [], {'primary_key': 'True'}),
'model': ('django.db.models.fields.CharField', [], {'max_length': '100'}),
'name': ('django.db.models.fields.CharField', [], {'max_length': '100'})
}
}
complete_apps = ['content_interactions_stats'] | [
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ccnlab/utils.py | nikhilxb/ccnlab | 5 | 166264 | <reponame>nikhilxb/ccnlab
import fnmatch
from collections import defaultdict
def listdict_to_dictlist(ld):
dl = defaultdict(list)
keys = set(k for d in ld for k in d)
for d in ld:
for k in keys:
dl[k].append(d[k] if k in d else None)
return dl
class SearchableRegistry:
def __init__(self):
self.items = {}
def __call__(self, *args, **kwargs):
return self.get(*args, **kwargs)
def register(self, item):
self.items[item.__name__] = item
def get(self, *globs, call=True):
"""Return items that match any of the specified globs. By default, assumes that items are
callable (i.e. a function or constructor that requires no arguments) and calls them."""
names = self.items.keys()
if len(globs) > 0:
names = [name for name in names if any(fnmatch.fnmatch(name, glob) for glob in globs)]
return [self.items[name]() if call else self.items[name] for name in names]
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] |
src/demo2.py | lorenzobini/3D-shape-retrieval-search-engine | 2 | 162128 | import os
import numpy as np
import matplotlib.pyplot as plt
from shape import Shape
from visualize import visualize
from normalize import normalize_data, normalize_shape
from dataLoader import import_dataset, import_normalised_data
from featureExtraction import *
from featureMatching import *
from utils import pick_file
DATA_PATH = os.path.join(os.getcwd(), 'data') + os.sep
DATA_SHAPES_PRICETON = DATA_PATH + 'benchmark' + os.sep + 'db' + os.sep
SAVED_DATA = DATA_PATH + 'cache' + os.sep
NORMALIZED_DATA = SAVED_DATA + 'processed_data' + os.sep
try:
features = np.load(SAVED_DATA + "features.npy", allow_pickle=True)
features = features.item()
except:
pass
#TODO: Include a file picker to show that aspect we also implemented, and the speed of the feature calculation
# Retrieving shape
print("\n----------------------------------------------------")
print("3D Shapes Search Engine")
print("----------------------------------------------------")
while True:
print("Select a shape to search for similar ones. Only OFF and PLY formats are supported. \n")
try:
shape = pick_file()
break
except FileNotFoundError:
print("File not found. Try again.\n")
continue
except FileExistsError:
print("Format not supported. Please select an OFF or PLY file.\n")
continue
print('Normalising query shape . . . ')
shape, new_n_verts, new_n_faces = normalize_shape(shape)
# Calculating features for the shape
print('Calculating features for query shape and standardize them. . .')
shape_features = calculate_single_shape_metrics(shape)
shape_features = standardize_single_shape(shape_features)
# Calculate nearest neighbors via ANN and R-Nearest Neighbors
neighbors = r_neighbors(shape_features, features)
n_shapes_id, n_distances = neighbors[0][1:], neighbors[1][1:]
# Retrieving shapes from database
n_shapes = []
for id in n_shapes_id:
filename =NORMALIZED_DATA + "n" + str(id) + ".off"
file = open(filename, 'r')
verts, faces, n_verts, n_faces = read_off(file)
mesh = trm.load_mesh(filename)
shape = Shape(verts, faces, mesh)
shape.set_id(id)
n_shapes.append(shape)
visualize(n_shapes)
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tests/confmeasure.py | Mic92/vmsh | 39 | 130396 | <gh_stars>10-100
#!/usr/bin/env python3
import contextlib
import sys
from datetime import datetime
from pathlib import Path
from typing import List, Type, Optional
import pytest
from qemu import QemuVm, VmImage, spawn_qemu
from nix import notos_image, busybox_image
from root import TEST_ROOT
from vmsh import spawn_vmsh_command, VmshPopen
sys.path.append(str(TEST_ROOT.parent))
NOW = datetime.now().strftime("%Y%m%d-%H%M%S")
# passed to numactl, starts with 0
CORES_VMSH = "1-3"
CORES_QEMU = "4-7"
class Helpers:
@staticmethod
def root() -> Path:
return TEST_ROOT
@staticmethod
def notos_image() -> VmImage:
return notos_image(nix=".#measurement-image")
@staticmethod
def busybox_image() -> "contextlib._GeneratorContextManager[Path]":
# return busybox_image(nix=".#measurement-image")
return busybox_image()
@staticmethod
def spawn_vmsh_command(
args: List[str], cargo_executable: str = "vmsh"
) -> VmshPopen:
return spawn_vmsh_command(
args, cargo_executable, target="release", pin_cores=CORES_VMSH
)
@staticmethod
def run_vmsh_command(args: List[str], cargo_executable: str = "vmsh") -> VmshPopen:
proc = spawn_vmsh_command(
args, cargo_executable, target="release", pin_cores=CORES_VMSH
)
assert proc.wait() == 0
return proc
@staticmethod
def spawn_qemu(
image: VmImage,
virtio_blk: Optional[str] = None,
virtio_9p: Optional[str] = None,
extra_args: List[str] = [],
) -> "contextlib._GeneratorContextManager[QemuVm]":
extra_args_pre = [
"numactl",
"-C",
CORES_QEMU,
]
extra_args_ = extra_args.copy()
if virtio_blk is not None:
extra_args_ += [
"-drive",
f"id=drive2,file={virtio_blk},format=raw,if=none",
"-device",
"virtio-blk-pci,drive=drive2", # TODO mmio
]
if virtio_9p is not None:
extra_args_ += [
"-virtfs",
f"local,path={virtio_9p},security_model=none,mount_tag=measure9p",
]
return spawn_qemu(image, extra_args_, extra_args_pre)
@pytest.fixture
def helpers() -> Type[Helpers]:
return Helpers
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utils/label_data.py | safdark/CarND-Capstone | 2 | 99907 | <filename>utils/label_data.py
import glob
import os
import time
import numpy as np
import tensorflow as tf
from PIL import Image
from lxml import etree
from tqdm import tqdm
flags = tf.app.flags
flags.DEFINE_string('data_dir', None, 'Path to the folder where the images are stored')
flags.DEFINE_string('labels_dir', None, 'Path to the folder labels annotation are stored')
flags.DEFINE_string('model_path', None, 'Path to the frozen graph used for traffic light detection')
flags.DEFINE_string('label', None, 'The name of the corresponding label')
flags.DEFINE_integer('category_index', 10, 'The id of the traffic light category as detected by the model')
tf.app.flags.mark_flag_as_required('data_dir')
tf.app.flags.mark_flag_as_required('model_path')
tf.app.flags.mark_flag_as_required('label')
FLAGS = flags.FLAGS
def load_model(file_path):
detection_graph = tf.Graph()
with detection_graph.as_default():
od_graph_def = tf.GraphDef()
with tf.gfile.GFile(file_path, 'rb') as fid:
serialized_graph = fid.read()
od_graph_def.ParseFromString(serialized_graph)
tf.import_graph_def(od_graph_def, name='')
return detection_graph
def load_image(image_path):
image = Image.open(image_path)
(im_width, im_height) = image.size
return np.array(image.getdata()).reshape((im_height, im_width, 3)).astype(np.uint8), im_width, im_height
def run_inference(sess, ops, image_tensor, image):
output_dict = {}
time_s = time.time()
num_detections, boxes, scores, classes = sess.run(ops, feed_dict={image_tensor: image})
time_t = time.time() - time_s
output_dict['num_detections'] = int(num_detections[0])
output_dict['detection_classes'] = classes[0].astype(np.uint8)
output_dict['detection_boxes'] = boxes[0]
output_dict['detection_scores'] = scores[0]
output_dict['detection_time'] = time_t
return output_dict
def create_xml_annotation(detection_dict, label_path, label, category_index, threshold=0.5):
root = etree.Element("annotation")
etree.SubElement(root, "filename").text = os.path.basename(detection_dict['filename'])
source = etree.SubElement(root, 'source')
etree.SubElement(source, 'database').text = 'Unknown'
size = etree.SubElement(root, 'size')
width = detection_dict['width']
height = detection_dict['height']
etree.SubElement(size, 'width').text = str(width)
etree.SubElement(size, 'height').text = str(height)
etree.SubElement(size, 'depth').text = str(detection_dict['depth'])
etree.SubElement(root, 'segmented').text = '0'
num_detections = detection_dict['num_detections']
detection_classes = detection_dict['detection_classes']
detection_boxes = detection_dict['detection_boxes']
detection_scores = detection_dict['detection_scores']
# Selects the indexes that correspond to the correct category and that passes the detection score threshold
traffic_lights_idx = np.where((detection_classes == category_index) & (detection_scores >= threshold))
detection_boxes = detection_boxes[traffic_lights_idx]
for box in detection_boxes:
detection = etree.Element('object')
etree.SubElement(detection, 'name').text = label
etree.SubElement(detection, 'pose').text = 'Unspecified'
etree.SubElement(detection, 'truncated').text = '0'
etree.SubElement(detection, 'difficult').text = '0'
bound_box = etree.SubElement(detection, 'bndbox')
# Convert from normalized boxes
etree.SubElement(bound_box, 'xmin').text = str(int(box[1] * width))
etree.SubElement(bound_box, 'ymin').text = str(int(box[0] * height))
etree.SubElement(bound_box, 'xmax').text = str(int(box[3] * width))
etree.SubElement(bound_box, 'ymax').text = str(int(box[2] * height))
root.append(detection)
with open(label_path, 'wb') as f:
f.write(etree.tostring(root, pretty_print=True))
def main(unused_argv):
if FLAGS.labels_dir is None:
FLAGS.labels_dir = os.path.join(FLAGS.data_dir, 'labels')
if not os.path.isdir(FLAGS.labels_dir):
os.makedirs(FLAGS.labels_dir)
image_paths = glob.glob(os.path.join(FLAGS.data_dir, '*.jpg'))
graph = load_model(FLAGS.model_path)
with graph.as_default():
image_tensor = graph.get_tensor_by_name('image_tensor:0')
boxes_tensor = graph.get_tensor_by_name('detection_boxes:0')
scores_tensor = graph.get_tensor_by_name('detection_scores:0')
classes_tensor = graph.get_tensor_by_name('detection_classes:0')
detections_tensor = graph.get_tensor_by_name('num_detections:0')
ops = [detections_tensor, boxes_tensor, scores_tensor, classes_tensor]
with tf.Session() as sess:
for image_path in tqdm(image_paths, desc='Processing', unit=' images'):
image, width, height = load_image(image_path)
# Expand dimensions since the model expects images to have shape: [1, None, None, 3]
image_np_expanded = np.expand_dims(image, axis=0)
# Actual detection.
output_dict = run_inference(sess, ops, image_tensor, image_np_expanded)
file_name = os.path.basename(image_path)
# Adds some metadata
output_dict['filename'] = file_name
output_dict['width'] = width
output_dict['height'] = height
output_dict['depth'] = 3
label_path = os.path.join(FLAGS.labels_dir, '{}.xml'.format(os.path.splitext(file_name)[0]))
create_xml_annotation(output_dict, label_path, FLAGS.label, FLAGS.category_index)
if __name__ == '__main__':
tf.app.run()
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librs/dblib.py | mrabobi/ISChallenge | 1 | 163117 | <filename>librs/dblib.py
import os
import time
import traceback
from datetime import datetime
from sqlalchemy import create_engine, engine, text
cloud_sql_connection_name = os.getenv("CLOUD_SQL_CONNECTION_NAME")
db = create_engine(
engine.url.URL(
drivername="mysql+pymysql",
username=os.getenv("DB_USER"),
password=<PASSWORD>("<PASSWORD>"),
database=os.getenv("DB_NAME"),
query={"unix_socket": "/cloudsql/{}".format(cloud_sql_connection_name)},
),
)
def insert_user(name, email, token=None):
with db.connect() as conn:
added_at_timestamp = int(time.time())
added_at_formatted = datetime.fromtimestamp(added_at_timestamp).strftime("%Y-%m-%d %H:%M:%S")
stmt = text(
"INSERT INTO users (name, email, added_at, token) VALUES (:name, :email, :added_at, :token)"
)
result = conn.execute(
stmt, name=name, email=email, added_at=added_at_formatted, token=token
)
if result:
return True
return False
def user_add_new_challange(user_id, location_id):
with db.connect() as conn:
# Format -- 2020-01-01 10:10:10
start_time_timestamp = int(time.time())
start_time_formatted = datetime.fromtimestamp(start_time_timestamp).strftime("%Y-%m-%d %H:%M:%S")
stmt = text(
"INSERT INTO picked (user_id, location_id, start_time) VALUES (:user_id, :location_id, :start_time)"
)
result = conn.execute(
stmt, user_id=user_id, location_id=location_id, start_time=start_time_formatted
)
if result:
return True
return False
def insert_new_location(lat, long, name, url, description):
with db.connect() as conn:
stmt = text(
"INSERT INTO locations (latitude, longitude, name, url, description)"
" VALUES (:latitude, :longitude, :name, :url, :description)"
)
result = conn.execute(
stmt, latitude=lat, longitude=long, name=name, url=url, description=description
)
if result:
return True
return False
def get_location_id(name):
with db.connect() as conn:
stmt = text(
"SELECT location_id FROM locations WHERE name=:name"
)
result = conn.execute(
stmt, name=name
).fetchone()
if result:
return result[0]
return None
def get_user_id(name):
with db.connect() as conn:
stmt = text(
"SELECT user_id FROM users WHERE name=:name"
)
result = conn.execute(
stmt, name=name
).fetchone()
if result:
return result[0]
return None
def get_coords(name):
with db.connect() as conn:
stmt = text(
"SELECT latitude, longitude FROM locations WHERE name=:name"
)
result = conn.execute(
stmt, name=name
).fetchone()
if result:
return result, "result is {}".format(result)
return None, ""
def get_everything_from_locations():
with db.connect() as conn:
stmt = text(
"SELECT latitude, longitude, url, name FROM locations"
)
result = conn.execute(stmt).fetchall()
li = list()
for index in result:
li.append(index)
return li, "result is {}".format(result) | [
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] |
14/python/collatz.py | tylermumford/euler | 1 | 54573 | #!/usr/bin/env python3
collatz_memo = {1: 1}
def collatz(n):
'''Return the length of the Collatz sequence for the given input'''
if n in collatz_memo:
result = collatz_memo[n]
elif n % 2 == 0:
collatz_memo[n] = 1 + collatz(n / 2)
result = collatz_memo[n]
else:
collatz_memo[n] = 1 + collatz(3 * n + 1)
result = collatz_memo[n]
return result
if __name__ == '__main__':
import argparse
desc = 'Return the collatz number for a given input'
parser = argparse.ArgumentParser(description=desc)
parser.add_argument('n', type=int, help='integer to use as input')
args = parser.parse_args()
print(collatz(args.n))
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build/lib.linux-x86_64-2.7_ucs4/mx/DateTime/ISO.py | mkubux/egenix-mx-base | 0 | 55207 | """ This module provides a set of constructors and routines to convert
between DateTime[Delta] instances and ISO representations of date
and time.
Note: Timezones are only interpreted by ParseDateTimeGMT(). All
other constructors silently ignore the time zone information.
Copyright (c) 1998-2000, <NAME>; mailto:<EMAIL>
Copyright (c) 2000-2015, eGenix.com Software GmbH; mailto:<EMAIL>
See the documentation for further information on copyrights,
or contact the author.
"""
import DateTime,Timezone
import re
# Grammar: ISO 8601 (not all, but what we need from it)
_year = '(?P<year>\d?\d\d\d)'
_month = '(?P<month>\d?\d)'
_day = '(?P<day>\d?\d)'
_hour = '(?P<hour>\d?\d)'
_minute = '(?P<minute>\d?\d)'
_second = '(?P<second>\d?\d(?:\.\d+)?)'
_sign = '(?P<sign>[-+])'
_week = 'W(?P<week>\d?\d)'
_zone = Timezone.isozone
_weekdate = _year + '-?(?:' + _week + '-?' + _day + '?)?'
_date = _year + '-?' + '(?:' + _month + '-?' + _day + '?)?'
_time = _hour + ':?' + _minute + ':?' + _second + '?(?:' + _zone + ')?'
isodatetimeRE = re.compile(_date + '(?:[ T]' + _time + ')?$')
isodateRE = re.compile(_date + '$')
isotimeRE = re.compile(_time + '$')
isodeltaRE = re.compile(_sign + '?' + _time + '$')
isoweekRE = re.compile(_weekdate + '$')
isoweektimeRE = re.compile(_weekdate + '(?:[ T]' + _time + ')?$')
def WeekTime(year,isoweek=1,isoday=1,hour=0,minute=0,second=0.0):
""" Week(year,isoweek=1,isoday=1,hour=0,minute=0,second=0.0)
Returns a DateTime instance pointing to the given ISO week and
day. isoday defaults to 1, which corresponds to Monday in the
ISO numbering. The time part is set as given.
"""
d = DateTime.DateTime(year,1,1,hour,minute,second)
if d.iso_week[0] == year:
# 1.1. belongs to year (backup to Monday)
return d + (-d.day_of_week + 7 * (isoweek-1) + isoday-1)
else:
# 1.1. belongs to year-1 (advance to next Monday)
return d + (7-d.day_of_week + 7 * (isoweek-1) + isoday-1)
# Alias
Week = WeekTime
# Aliases for the other constructors (they all happen to already use
# ISO format)
Date = DateTime.Date
Time = DateTime.Time
TimeDelta = DateTime.TimeDelta
def ParseDateTime(isostring,parse_isodatetime=isodatetimeRE.match):
""" ParseDateTime(isostring)
Returns a DateTime instance reflecting the given ISO date. A
time part is optional and must be delimited from the date by a
space or 'T'.
Time zone information is parsed, but not evaluated.
"""
s = isostring.strip()
date = parse_isodatetime(s)
if not date:
raise ValueError,'wrong format, use YYYY-MM-DD HH:MM:SS'
year,month,day,hour,minute,second,zone = date.groups()
year = int(year)
if month is None:
month = 1
else:
month = int(month)
if day is None:
day = 1
else:
day = int(day)
if hour is None:
hour = 0
else:
hour = int(hour)
if minute is None:
minute = 0
else:
minute = int(minute)
if second is None:
second = 0.0
else:
second = float(second)
return DateTime.DateTime(year,month,day,hour,minute,second)
def ParseDateTimeGMT(isostring,parse_isodatetime=isodatetimeRE.match):
""" ParseDateTimeGMT(isostring)
Returns a DateTime instance in UTC reflecting the given ISO
date. A time part is optional and must be delimited from the
date by a space or 'T'. Timezones are honored.
"""
s = isostring.strip()
date = parse_isodatetime(s)
if not date:
raise ValueError,'wrong format, use YYYY-MM-DD HH:MM:SS'
year,month,day,hour,minute,second,zone = date.groups()
year = int(year)
if month is None:
month = 1
else:
month = int(month)
if day is None:
day = 1
else:
day = int(day)
if hour is None:
hour = 0
else:
hour = int(hour)
if minute is None:
minute = 0
else:
minute = int(minute)
if second is None:
second = 0.0
else:
second = float(second)
offset = Timezone.utc_offset(zone)
return DateTime.DateTime(year,month,day,hour,minute,second) - offset
# Alias
ParseDateTimeUTC = ParseDateTimeGMT
def ParseDate(isostring,parse_isodate=isodateRE.match):
""" ParseDate(isostring)
Returns a DateTime instance reflecting the given ISO date. A
time part may not be included.
"""
s = isostring.strip()
date = parse_isodate(s)
if not date:
raise ValueError,'wrong format, use YYYY-MM-DD'
year,month,day = date.groups()
year = int(year)
if month is None:
month = 1
else:
month = int(month)
if day is None:
day = 1
else:
day = int(day)
return DateTime.DateTime(year,month,day)
def ParseWeek(isostring,parse_isoweek=isoweekRE.match):
""" ParseWeek(isostring)
Returns a DateTime instance reflecting the given ISO date. A
time part may not be included.
"""
s = isostring.strip()
date = parse_isoweek(s)
if not date:
raise ValueError,'wrong format, use yyyy-Www-d, e.g. 1998-W01-1'
year,week,day = date.groups()
year = int(year)
if week is None:
week = 1
else:
week = int(week)
if day is None:
day = 1
else:
day = int(day)
return Week(year,week,day)
def ParseWeekTime(isostring,parse_isoweektime=isoweektimeRE.match):
""" ParseWeekTime(isostring)
Returns a DateTime instance reflecting the given ISO date. A
time part is optional and must be delimited from the date by a
space or 'T'.
"""
s = isostring.strip()
date = parse_isoweektime(s)
if not date:
raise ValueError,'wrong format, use e.g. "1998-W01-1 12:00:30"'
year,week,day,hour,minute,second,zone = date.groups()
year = int(year)
if week is None:
week = 1
else:
week = int(week)
if day is None:
day = 1
else:
day = int(day)
if hour is None:
hour = 0
else:
hour = int(hour)
if minute is None:
minute = 0
else:
minute = int(minute)
if second is None:
second = 0.0
else:
second = float(second)
return WeekTime(year,week,day,hour,minute,second)
def ParseTime(isostring,parse_isotime=isotimeRE.match):
""" ParseTime(isostring)
Returns a DateTimeDelta instance reflecting the given ISO time.
Hours and minutes must be given, seconds are
optional. Fractions of a second may also be used,
e.g. 12:23:12.34.
"""
s = isostring.strip()
time = parse_isotime(s)
if not time:
raise ValueError,'wrong format, use HH:MM:SS'
hour,minute,second,zone = time.groups()
hour = int(hour)
minute = int(minute)
if second is not None:
second = float(second)
else:
second = 0.0
return DateTime.TimeDelta(hour,minute,second)
def ParseTimeDelta(isostring,parse_isodelta=isodeltaRE.match):
""" ParseTimeDelta(isostring)
Returns a DateTimeDelta instance reflecting the given ISO time
as delta. Hours and minutes must be given, seconds are
optional. Fractions of a second may also be used,
e.g. 12:23:12.34. In addition to the ISO standard a sign may be
prepended to the time, e.g. -12:34.
"""
s = isostring.strip()
time = parse_isodelta(s)
if not time:
raise ValueError,'wrong format, use [-]HH:MM:SS'
sign,hour,minute,second,zone = time.groups()
hour = int(hour)
minute = int(minute)
if second is not None:
second = float(second)
else:
second = 0.0
if sign and sign == '-':
return -DateTime.TimeDelta(hour,minute,second)
else:
return DateTime.TimeDelta(hour,minute,second)
def ParseAny(isostring):
""" ParseAny(isostring)
Parses the given string and tries to convert it to a
DateTime[Delta] instance.
"""
try:
return ParseDateTime(isostring)
except ValueError:
pass
try:
return ParseWeekTime(isostring)
except ValueError:
pass
try:
return ParseTimeDelta(isostring)
except ValueError:
raise ValueError,'unsupported format: "%s"' % isostring
def str(datetime,tz=None):
""" str(datetime,tz=DateTime.tz_offset(datetime))
Returns the datetime instance as ISO date string. tz can be
given as DateTimeDelta instance providing the time zone
difference from datetime's zone to UTC. It defaults to
DateTime.tz_offset(datetime) which assumes local time.
"""
if tz is None:
tz = datetime.gmtoffset()
return '%04i-%02i-%02i %02i:%02i:%02i%+03i%02i' % (
datetime.year, datetime.month, datetime.day,
datetime.hour, datetime.minute, datetime.second,
tz.hour,tz.minute)
def strGMT(datetime):
""" strGMT(datetime)
Returns the datetime instance as ISO date string assuming it is
given in GMT.
"""
return '%04i-%02i-%02i %02i:%02i:%02i+0000' % (
datetime.year, datetime.month, datetime.day,
datetime.hour, datetime.minute, datetime.second)
def strUTC(datetime):
""" strUTC(datetime)
Returns the datetime instance as ISO date string assuming it is
given in UTC.
"""
return '%04i-%02i-%02i %02i:%02i:%02i+0000' % (
datetime.year, datetime.month, datetime.day,
datetime.hour, datetime.minute, datetime.second)
# Testing
if __name__ == '__main__':
e = DateTime.Date(1900,1,1)
for i in range(100000):
d = e + i
year,week,day = d.iso_week
c = WeekTime(year,week,day)
if d != c:
print ' Check %s (given; %i) != %s (parsed)' % (d,d.day_of_week,c)
elif i % 1000 == 0:
print d,'ok'
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oks/elements/operation/eitem.py | alnvdl/oks | 2 | 107972 | <gh_stars>1-10
#!/usr/bin/env python
#-*- coding:utf-8 -*-
from core.output import *
from oks.elements.operation import OperationElement
import oks
class ExchangeItem(OperationElement):
TYPE = oks.EXCHANGE_ITEM
def __init__(self, **kwargs):
self.name = ""
self.quantity = 1
self.notes = ""
self.row = ("name", "quantity", "notes")
OperationElement.__init__(self, **kwargs)
def make_output(self):
eitem = Section("eitem_{0}".format(self.row_id), self.name)
quantity = FloatData("quantity", "Quantidade", self.quantity,
strip_zeros=True)
eitem.add_child(quantity)
notes = StringData("notes", "Observações", self.notes)
eitem.add_child(notes)
return eitem
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test/resources/app.py | earwig/bitshift | 28 | 144896 | """
Module to contain all the project's Flask server plumbing.
"""
from flask import Flask
from flask import render_template, session
from bitshift import assets
# from bitshift.database import Database
# from bitshift.query import parse_query
app = Flask(__name__)
app.config.from_object("bitshift.config")
app_env = app.jinja_env
app_env.line_statement_prefix = "="
app_env.globals.update(assets=assets)
# database = Database()
@app.route("/")
def index():
return render_template("index.html")
@app.route("/search/<query>")
def search(query):
# tree = parse_query(query)
# database.search(tree)
pass
@app.route("/about")
def about():
return render_template("about.html")
@app.route("/developers")
def developers():
return render_template("developers.html")
if __name__ == "__main__":
app.run(debug=True)
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peptidemapper/src/pepmapperapp/migrations/0002_mapperautocomplete.py | uvic-proteincentre/MRMAssayDB | 0 | 26357 | <filename>peptidemapper/src/pepmapperapp/migrations/0002_mapperautocomplete.py
# -*- coding: utf-8 -*-
from __future__ import unicode_literals
from django.db import models, migrations
class Migration(migrations.Migration):
dependencies = [
('pepmapperapp', '0001_initial'),
]
operations = [
migrations.CreateModel(
name='MapperAutoComplete',
fields=[
('id', models.AutoField(verbose_name='ID', serialize=False, auto_created=True, primary_key=True)),
('uniprotacc', models.CharField(max_length=20)),
('prot_name', models.CharField(max_length=300)),
('gene', models.CharField(max_length=100)),
('organism', models.CharField(max_length=100)),
('pepseq', models.CharField(max_length=20)),
('path_name', models.CharField(max_length=1000)),
('dis_mut', models.CharField(max_length=1000)),
('go_id', models.CharField(max_length=100)),
('go_name', models.CharField(max_length=1000)),
('go_term', models.CharField(max_length=100)),
],
),
]
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] |
assam/scheduling/scheduling_module.py | ykawashima/assam | 3 | 86826 | <reponame>ykawashima/assam<filename>assam/scheduling/scheduling_module.py<gh_stars>1-10
#!/usr/bin/env python
"""
MIT License
Copyright (c) 2020-2021 <NAME>
Permission is hereby granted, free of charge, to any person obtaining a copy
of this software and associated documentation files (the "Software"), to deal
in the Software without restriction, including without limitation the rights
to use, copy, modify, merge, publish, distribute, sublicense, and/or sell
copies of the Software, and to permit persons to whom the Software is
furnished to do so, subject to the following conditions:
The above copyright notice and this permission notice shall be included in all
copies or substantial portions of the Software.
THE SOFTWARE IS PROVIDED "AS IS", WITHOUT WARRANTY OF ANY KIND, EXPRESS OR
IMPLIED, INCLUDING BUT NOT LIMITED TO THE WARRANTIES OF MERCHANTABILITY,
FITNESS FOR A PARTICULAR PURPOSE AND NONINFRINGEMENT. IN NO EVENT SHALL THE
AUTHORS OR COPYRIGHT HOLDERS BE LIABLE FOR ANY CLAIM, DAMAGES OR OTHER
LIABILITY, WHETHER IN AN ACTION OF CONTRACT, TORT OR OTHERWISE, ARISING FROM,
OUT OF OR IN CONNECTION WITH THE SOFTWARE OR THE USE OR OTHER DEALINGS IN THE
SOFTWARE.
"""
import operator
import numpy as np
from tqdm import tqdm
class SchedulingModule():
def __init__(self, targets):
"""
Initialisation function for the scheduling module.
Parameters
----------
targets : list
List of targets.
Returns
-------
None.
"""
# Store targets
self.targets = targets
# Declare empty variables
self.contacts = None
self.scheduled_contacts = None
def combine_contacts(self):
"""
Function to combine contacts from all the targets into one list.
Returns
-------
contacts : list
List of all contacts.
"""
# Extract contacts
contacts = [contact
for target in self.targets
for contact in target.contacts]
# Store contacts
self.contacts = contacts
# Return contacts
return contacts
def simple_dynamic_schedule(self):
"""
Function to schedule contacts using the simple dynamic linear
programming method.
Returns
-------
scheduled_contacts : list
List of scheduled contacts.
benefit_optimal : numpy.float64
Optimal benefit corresponding to the scheduled contacts.
"""
# Sort list of contacts by end time
contacts = self.contacts
contact_key = operator.attrgetter("end")
contacts.sort(key=contact_key)
# Shift the contacts by using a dummy element as the original
# algorithm assumes indexing from one
contacts_shift = [None] + contacts
# Calculate predecessors
pred = np.zeros(len(contacts_shift), dtype="uintc")
# Loop through each contact
for i, contact in enumerate(tqdm(contacts_shift, "Calculating Predecessors")):
# Skip dummy element
if i == 0:
continue
# Loop through preceeding contacts, working backwards from the
# current contact
for j in range(i-1, 0, -1):
# Extract second contact
second_contact = contacts_shift[j]
# Update predecessor if it does not intersect with the contact
if contact.start >= second_contact.end:
pred[i] = j
break
# Calculate schedule
benefit = np.zeros(len(contacts_shift))
optimal_contacts = [[]] + [None] * (len(contacts))
# Iterate through subproblems
for i, contact in enumerate(tqdm(contacts_shift, "Scheduling")):
# Skip dummy element
if i == 0:
continue
# Calculate previous benefit
benefit_previous = benefit[i-1]
# Calculate new benefit
benefit_new = benefit[pred[i]] + contact.benefit
# Update benefit
benefit[i] = max(benefit_previous, benefit_new)
# Update included contacts
optimal_contacts_previous = optimal_contacts[i-1]
optimal_contacts_new = optimal_contacts[pred[i]] + [i]
if benefit_new > benefit_previous:
optimal_contacts[i] = optimal_contacts_new
else:
optimal_contacts[i] = optimal_contacts_previous
# Extract optimal benefit and contacts
benefit_optimal = benefit[-1]
scheduled_contacts = [contacts_shift[i] for i in optimal_contacts[-1]]
# Store scheduled_contacts
self.scheduled_contacts = scheduled_contacts
# Return scheduled contacts and optimal benefit
return scheduled_contacts, benefit_optimal
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count_doubles.py | tiagocoutinho/tc-rusty | 0 | 114545 | <filename>count_doubles.py
#!/usr/bin/env python
# -*- coding: utf-8 -*-
import os
import random
import string
import itertools
import functools
import six
import numpy
from tools import GCContext, run
from tools import c_debug, c_release
from tools import rust_debug, rust_release
# ---- RUST -------------------------------------
count_doubles_rust_debug = rust_debug.count_doubles
count_doubles_rust = rust_release.count_doubles
# ---- C ----------------------------------------
count_doubles_c_debug = c_debug.count_doubles
count_doubles_c = c_release.count_doubles
# ---- PYTHON -----------------------------------
def count_doubles_python(val, n):
total = 0
for c1, c2 in itertools.izip(val, val[1:]):
if c1 == c2:
total += 1
return total
# ---- PYTHON NUMBA -----------------------------
import numba
def numba_numpy(f):
@functools.wraps(f)
def wrapper(val, n):
val = numpy.frombuffer(val, dtype=numpy.uint8)
return f(val, n)
return wrapper
@numba_numpy
@numba.jit
def count_doubles_numba(val, n):
total = 0
for c1, c2 in zip(val, val[1:]):
if c1 == c2:
total += 1
return total
# ---- PYTHON PYTHRAN ---------------------------
from pythrantcrusty import count_doubles_pythran, count_doubles_pythran_zip
# -----------------------------------------------
def get_data():
this_dir = os.path.dirname(os.path.abspath(__file__))
data_file = os.path.join(this_dir, 'count_doubles.data')
if os.path.isfile(data_file):
with open(data_file, 'rb') as f:
data = f.read()
else:
six.print_('Generating data...', end='', flush=True)
N = 10000000
data = ''.join(random.choice(string.ascii_letters)
for i in range(N))
with open(data_file, 'wb') as f:
f.write(data)
six.print_('[DONE]')
return data
data = get_data()
ARGS = [data, len(data)]
def main():
TESTS = (
'count_doubles_rust',
'count_doubles_c',
'count_doubles_numba',
'count_doubles_pythran',
'count_doubles_python',
)
expected = count_doubles_c(*ARGS)
run('count_doubles', TESTS, expected=expected, repeat=10)
if __name__ == "__main__":
main()
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TrendTrading/BearBullIndicators/SPY DOW RUSS market.py | benjabee10/WKUResearch | 0 | 92571 | <gh_stars>0
import numpy as np
import pandas as pd
import talib
low=0.9
high=1.1
pct= 0.1
def initialize(context):
context.stocks= [sid(8347), sid(6653), sid(3149), sid(4151), sid(5061), sid(19675), sid(700), sid(8229)]
context.spy= sid(8554)
context.russ= sid(21519)
context.dow= sid(2174)
context.small= 50
context.large= 200
context.market= 0
schedule_function(check)
def check(context, data):
spydata= data.history(context.spy, 'price', context.large+10, '1d')
spys= talib.SMA(spydata, context.small)[-1]
spyl= talib.SMA(spydata, context.large)[-1]
russdata= data.history(context.russ, 'price', context.large+10, '1d')
russs= talib.SMA(russdata, context.small)[-1]
russl= talib.SMA(russdata, context.large)[-1]
dowdata= data.history(context.dow, 'price', context.large+10, '1d')
dows= talib.SMA(dowdata, context.small)[-1]
dowl= talib.SMA(dowdata, context.large)[-1]
if spys > high*spyl and russs > high*russl and dows > high*dowl:
context.market= -1
elif low*spyl <= spys <= high*spyl or low*russl <= russs <= high*russl or low*dowl <= dows <= high*dowl:
context.market= 0
elif spys < low*spyl and russs < low*russl and dows < low*dowl:
context.market= 1
spyposition = context.portfolio.positions[context.spy].amount
russposition = context.portfolio.positions[context.russ].amount
dowposition = context.portfolio.positions[context.spy].amount
if context.market == 1 and spyposition==0:
order_target_percent(context.spy, 0.3)
order_target_percent(context.russ, 0.3)
order_target_percent(context.dow, 0.3)
clearstocks(context, data)
elif context.market == 0:
apotrade(context, data)
order_target_percent(context.spy, 0)
order_target_percent(context.russ, 0)
order_target_percent(context.dow, 0)
elif context.market == -1 and spyposition==0:
order_target_percent(context.spy, -0.3)
order_target_percent(context.russ, -0.3)
order_target_percent(context.dow, -0.3)
clearstocks(context, data)
record(market=context.market, leverage=context.account.leverage)
def apotrade(context, data):
for stock in context.stocks:
prices = data.history(stock, 'price', 50, '1d')
apo = talib.APO(prices, fastperiod=12, slowperiod=26, matype=0)[-1]
position = context.portfolio.positions[stock].amount
if apo > 0 and position == 0:
order_target_percent(stock, pct)
elif apo < 0 and position > 0:
order_target_percent(stock, 0)
def clearstocks(context, data):
for stock in context.stocks:
order_target_percent(stock, 0) | [
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cosmoscope/server.py | cosmoscope/cosmo-server | 0 | 26781 | import logging
import signal
import gevent
import msgpack
from zerorpc import Publisher, Puller, Pusher, Server
import numpy as np
import jsonpickle
from .store import store
from .data import Data
from .operations.operation import Operation
from .utils.singleton import Singleton
__all__ = ['ServerAPI']
class ServerAPI(Server, metaclass=Singleton):
"""
RPC server class.
"""
def __init__(self, publisher=None, *args, **kwargs):
super(ServerAPI, self).__init__(*args, **kwargs)
self.publisher = publisher
def undo(self):
"""
Undo an operation popping from the stack and calling its `undo` method.
"""
Operation.pop().undo()
def redo(self):
"""
Call the `redo` method on the latest operation to be added to stack.
"""
Operation.redo()
def register(self, msg):
pass
# self.publisher.testing("This is a test on client.")
def load_data(self, path, format):
"""
Load a data file given path and format.
"""
import astropy.units as u
# data = Data.read(path, format=format)
data = Data(np.random.sample(100) * u.Jy, spectral_axis=np.linspace(1100, 1200, 100) * u.AA)
self.publisher.data_loaded(data.identifier)
def create_data(self, *args, **kwargs):
data = Data(*args, **kwargs)
self.publisher.data_created(data.identifier)
return data.identifier
def query_loader_formats(self):
"""
Returns a list of available data loader formats.
"""
from specutils import Spectrum1D
from astropy.io import registry as io_registry
all_formats = io_registry.get_formats(Spectrum1D)['Format']
return all_formats
def query_data(self, identifier):
data = store[identifier]
data_dict = {
'name': data.name,
'identifier': data.identifier,
'spectral_axis': data.spectral_axis.value.tolist(),
'spectral_axis_unit': data.spectral_axis.unit.to_string(),
'flux': data.flux.value.tolist(),
'unit': data.flux.unit.to_string()
}
return data_dict
def query_data_attribute(self, identifier, name):
data = store[identifier]
data_attr = getattr(data, name)
packed_data_attr = data.encode(data_attr)
return packed_data_attr
def launch(server_address=None, publisher_address=None, block=True):
server_address = server_address or "tcp://127.0.0.1:4242"
publisher_address = publisher_address or "tcp://127.0.0.1:4243"
# Establish the publisher service. This will send events to any
# subscribed services along the designated address.
publisher = Publisher()
publisher.connect(publisher_address)
# Setup the server service. This will be the api that clients
# will send events to.
server = ServerAPI(publisher)
server.bind(server_address)
logging.info(
"Server is now listening on %s and sending on %s.",
server_address, publisher_address)
# Allow for stopping the server via ctrl-c
gevent.signal(signal.SIGINT, server.stop)
server.run() if block else gevent.spawn(server.run) | [
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] |
gsea_api/gsea/java.py | krassowski/gsea-api | 8 | 97770 | <reponame>krassowski/gsea-api
import re
from glob import glob
from pathlib import Path
from shutil import rmtree
from tempfile import TemporaryDirectory
from typing import Union
from warnings import warn
from pandas import read_table, DataFrame
from .base import GSEA
from ..molecular_signatures_db import GeneSets
from ..paths import tmp_dir, third_party_dir
class GSEADesktop(GSEA):
path = Path('java')
def __init__(self, memory_size=5000, gsea_jar_path: Union[str, Path] = None, **kwargs):
super().__init__(**kwargs)
self.memory_size = memory_size
if gsea_jar_path is None:
gsea_jar_path = third_party_dir / 'gsea-3.0.jar'
else:
gsea_jar_path = Path(gsea_jar_path)
if not str(gsea_jar_path).endswith('.jar'):
warn(f'{gsea_jar_path} does not look like a valid GSEADesktop path')
self.gsea_path = gsea_jar_path
if not self.gsea_path.exists():
raise Exception(
f'Could not find GSEADesktop installation in {gsea_jar_path};'
f' please symlink it or set path in "gsea_jar_path" argument.'
)
@property
def core_command(self):
return f'{self.path} -cp {self.gsea_path}'
@staticmethod
def load_results(out_dir, name, expression_data, delete=True):
timestamps = []
for path in glob(f'{out_dir}/{name}.Gsea.*'):
match = re.match(rf'{name}\.Gsea\.(\d*)', Path(path).name)
timestamp = match.group(1)
timestamps.append(timestamp)
timestamps = sorted(timestamps, reverse=True)
newest = timestamps[0]
results = {}
for class_type in set(expression_data.safe_classes):
path = f'{out_dir}/{name}.Gsea.{newest}/gsea_report_for_{class_type}_{newest}.xls'
result: DataFrame = read_table(path)
assert all(result['Unnamed: 11'].isnull())
result.drop('Unnamed: 11', axis='columns', inplace=True)
result.columns = [column.lower().replace(' ', '_') for column in result.columns]
result.drop('gs<br>_follow_link_to_msigdb', axis='columns', inplace=True)
result = result.sort_values('fdr_q-val')
result.set_index('name', inplace=True)
results[class_type] = result.dropna(subset=['nes', 'fdr_q-val'])
if delete:
rmtree(f'{out_dir}/{name}.Gsea.{newest}', ignore_errors=True)
return results
metrics_using_variance = {'tTest', 'Signal2Noise'}
def run(
# Common GSEA interface
self, expression_data, gene_sets: Union[str, GeneSets], metric='Signal2Noise',
permutations=1000, permutation_type='phenotype', verbose=False,
# GSEADesktop-specific
collapse=True, mode='Max_probe', detailed_sets_analysis=False, out_dir=None,
plot_top_x=0, name='my_analysis', normalization='meandiv', min_genes=15, max_genes=500,
sort='real',
# internal, won't be passed to GSEA
use_existing=False, delete=True,
# additional arguments to be passed
**kwargs
):
"""Memory in MB"""
super().run(expression_data, gene_sets, metric=metric)
gene_sets = self.solve_gene_sets(gene_sets)
assert permutation_type in {'Gene_set', 'phenotype'}
assert metric in {'Diff_of_Classes', 'log2_Ratio_of_Classes', 'Ratio_of_Classes' 'tTest', 'Signal2Noise'}
if use_existing:
try:
results = self.load_results(out_dir, name, expression_data)
print(
'Re-using pre-calculated results for GSEA'
' (to prevent this, set use_existing=False or clear the temporary GSEA folder)'
)
return results
except IndexError:
pass
command = f'{self.core_command} -Xmx{self.memory_size}m xtools.gsea.Gsea'
for key, value in kwargs.items():
command += f' -{key} {value}'
data_path, classes_path = self.prepare_files(expression_data)
with TemporaryDirectory(dir=tmp_dir) as temp_dir:
out_dir = self.prepare_out_dir(out_dir, temp_dir)
command += (
f' -res {data_path}'
f' -cls {classes_path}'
f' -gmx {gene_sets}'
f' -collapse false -mode {mode} -norm {normalization}'
f' -nperm {permutations} -permute {permutation_type} -rnd_type no_balance'
f' -scoring_scheme weighted -rpt_label {name}'
f' -metric {metric}'
f' -sort {sort} -order descending'
' -create_gcts false -create_svgs false'
# ' -include_only_symbols true'
f' -make_sets {str(detailed_sets_analysis).lower()} -median false -num 100'
f' -plot_top_x {plot_top_x} -rnd_seed timestamp'
' -save_rnd_lists false'
f' -set_max {max_genes} -set_min {min_genes}'
' -zip_report false'
f' -out {out_dir}'
' -gui false'
)
self.run_in_subprocess(command, verbose=verbose)
results = self.load_results(out_dir, name, expression_data, delete=delete)
if delete:
self.clean_up(data_path, classes_path)
return results
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Drawing Book/code.py | swy20190/HackerRankChallenge | 0 | 38826 | <gh_stars>0
import os
def pageCount(n, p):
# Write your code here
front_flip = int(p/2)
end_flip = int(n/2)-front_flip
return min(front_flip, end_flip)
if __name__ == '__main__':
fptr = open(os.environ['OUTPUT_PATH'], 'w')
n = int(input().strip())
p = int(input().strip())
result = pageCount(n, p)
fptr.write(str(result) + '\n')
fptr.close()
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fairepart/backends/__init__.py | thoas/django-fairepart | 2 | 123264 | def get_backends():
from ..settings import BACKENDS
from ..utils import load_class
backends = {}
for backend_path in BACKENDS:
backend = load_class(backend_path)
backends[backend.name] = backend
return backends
| [
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imports/download-json.py | UrbanDS/semantic-segmentation-editor | 0 | 192063 | import glob
import requests
import json
files = glob.glob('*.jpg')
for file in files:
base_file = file.split("/")[-1]
output = open(base_file.replace(".jpg", ".json"))
url = f"http://localhost:3000/api/json/{base_file}"
json.dump(requests.get(url).json(), output) | [
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app.py | SamEdwardes/wod-tracker | 0 | 1604905 | import os
import boto3
import dash_bootstrap_components as dbc
import dash_core_components as dcc
import dash_html_components as html
import numpy as np
import pandas as pd
import dash
from dash.dependencies import Input, Output, State
from src.aws import refresh_aws_table
from src.helpers import clean_text
dynamodb = boto3.resource('dynamodb', region_name='ca-central-1')
##############################################
# Boilterplate
##############################################
app = dash.Dash(__name__, external_stylesheets=[dbc.themes.FLATLY])
app.title = "WOD Log"
port = int(os.environ.get("PORT", 5000))
server = app.server
##############################################
# Data
##############################################
wod_log = dynamodb.Table('wod_log')
##############################################
# Layouts
##############################################
layout_01_navbar = dbc.Navbar(
[
html.A(
# Use row and col to control vertical alignment of logo / brand
dbc.Row(
[
dbc.Col(dbc.NavbarBrand("Wod Log", className="ml-2")),
],
align="center",
no_gutters=True,
),
),
],
color="primary",
dark=True,
)
layout_02_workout_entry = dbc.Col([
# Row 1: User and Date
dbc.Row(
[
dbc.Col(
dbc.FormGroup(
[
dbc.Label("User", html_for="new-user"),
dbc.Input(
type="text",
id="new-user",
placeholder="Enter name of user (e.g. <NAME>",
),
]
),
width=6,
),
dbc.Col(
dbc.FormGroup(
[
dbc.Label("Date", html_for="new-date"),
dbc.Input(
type="date",
id="new-date",
placeholder="Enter date",
),
]
),
width=6,
),
],
form=True,
),
# Row 2: Exercise
dbc.Row(
[
dbc.Col(
dbc.FormGroup(
[
dbc.Label("Name of exercise", html_for="new-name"),
dbc.Input(
type="text",
id="new-name",
placeholder="Name of movement (e.g. 'Squat')",
),
]
)
)
]
),
# Row 3: Sets, reps, weight
dbc.Row(
[
dbc.Col(
dbc.FormGroup(
[
dbc.Label("Sets", html_for="new-sets"),
dbc.Input(
type="number",
id="new-sets",
placeholder="Enter number of sets (e.g. '3')",
),
]
),
width=4,
),
dbc.Col(
dbc.FormGroup(
[
dbc.Label("Reps", html_for="new-reps"),
dbc.Input(
type="number",
id="new-reps",
placeholder="Enter the number of reps (e.g. '10'",
),
]
),
width=4,
),
dbc.Col(
dbc.FormGroup(
[
dbc.Label("Weight", html_for="new-weight"),
dbc.Input(
type="number",
id="new-weight",
placeholder="Enter date",
),
]
),
width=4,
),
],
form=True,
),
# Row 4: Submit button
dbc.Row(dbc.Col([
dbc.Button(id='submit-entry-button', children="Submit Movement")
])),
dbc.Row(dbc.Col([
dbc.Label(id='submit-status')
]))
])
##############################################
# App layout
##############################################
app.layout = html.Div([
layout_01_navbar,
dbc.Col(html.Div([
html.Br(),
html.P('''Welcome to WOD Log. A tool for tracking the progress of your
workouts'''),
dbc.Label("History"),
html.Div(id="wod-log-df"),
html.Hr(),
html.P("Log a new workout"),
layout_02_workout_entry,
html.P("End of app...")
]))
])
##############################################
# App Callbacks
##############################################
@app.callback(
[Output("submit-status", "children"),
Output("wod-log-df", "children")],
[Input("submit-entry-button", "n_clicks")],
[State("new-date", "value"),
State("new-name", "value"),
State("new-sets", "value"),
State("new-reps", "value"),
State("new-weight", "value"),
State("new-user", "value")])
def submit_new_entry(n_clicks, date, name, sets, reps, weight, user):
if n_clicks is None:
return (
"Press button to submit workout",
refresh_aws_table(wod_log)[1]
)
else:
wod_log.put_item(
Item={
'name': clean_text(name),
'date': date,
'sets': sets,
'reps': reps,
'weight': weight,
'user': clean_text(user)
}
)
return (
f"Workout logged! Performed {sets} of {name} using {weight} lbs on {date}.",
refresh_aws_table(wod_log)[1]
)
##############################################
# Run
##############################################
if __name__ == '__main__':
app.run_server(
debug=True,
host="0.0.0.0",
port=port
)
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python-backend/tests/status/resources/test_mine_status_resource.py | MaxWardle/mds | 0 | 39031 | import json
from app.api.constants import MINE_STATUS_OPTIONS
from tests.constants import TEST_MINE_GUID
# GET
def test_get_mine_status_option(test_client, auth_headers):
get_resp = test_client.get('/mines/status', headers=auth_headers['full_auth_header'])
get_data = json.loads(get_resp.data.decode())
assert get_data == {'options': MINE_STATUS_OPTIONS}
assert get_resp.status_code == 200
def test_get_mine_status_not_found(test_client, auth_headers):
get_resp = test_client.get('/mines/status/' + TEST_MINE_GUID, headers=auth_headers['full_auth_header'])
get_data = json.loads(get_resp.data.decode())
assert get_data['error']['message'] == 'Mine Status not found'
assert get_resp.status_code == 404
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] |
561. Array Partition I/main.py | Competitive-Programmers-Community/LeetCode | 2 | 102450 | class Solution:
def arrayPairSum(self, nums):
"""
:type nums: List[int]
:rtype: int
"""
nums.sort()
s=0
for i in range(0,len(nums),2):
s+=nums[i]
return s
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systori/apps/equipment/urls.py | systori/systori | 12 | 8921 | <filename>systori/apps/equipment/urls.py
from django.conf.urls import url
from django.urls import path, include
from systori.apps.user.authorization import office_auth
from systori.apps.equipment.views import EquipmentListView, EquipmentView, EquipmentCreate, EquipmentDelete, EquipmentUpdate, RefuelingStopCreate, RefuelingStopDelete, RefuelingStopUpdate, MaintenanceCreate, MaintenanceDelete, MaintenanceUpdate
urlpatterns = [
# two url rules to make the active_filter keyword optional
url(
r"^equipment/$", office_auth(EquipmentListView.as_view()), name="equipment.list"
),
url(
r"^equipment/(?P<active_filter>[\w-]+)$",
office_auth(EquipmentListView.as_view()),
name="equipment.list",
),
url(
r"^equipment-(?P<pk>\d+)$",
office_auth(EquipmentView.as_view()),
name="equipment.view",
),
url(
r"^create-equipment$",
office_auth(EquipmentCreate.as_view()),
name="equipment.create",
),
url(
r"^equipment-(?P<pk>\d+)/edit$",
office_auth(EquipmentUpdate.as_view()),
name="equipment.edit",
),
url(
r"^equipment-(?P<pk>\d+)/delete$",
office_auth(EquipmentDelete.as_view()),
name="equipment.delete",
),
url(
r"^equipment-(?P<pk>\d+)/create-refueling-stop$",
office_auth(RefuelingStopCreate.as_view()),
name="refueling_stop.create",
),
url(
r"^equipment-(?P<equipment_pk>\d+)/refueling-stop-(?P<pk>\d+)/update$",
office_auth(RefuelingStopUpdate.as_view()),
name="refueling_stop.update",
),
url(
r"^equipment-(?P<equipment_pk>\d+)/refueling-stop-(?P<pk>\d+)/delete",
office_auth(RefuelingStopDelete.as_view()),
name="refueling_stop.delete",
),
url(
r"^equipment-(?P<pk>\d+)/create-maintenance",
office_auth(MaintenanceCreate.as_view()),
name="maintenance.create",
),
url(
r"^equipment-(?P<equipment_pk>\d+)/maintenance-(?P<pk>\d+)/update$",
office_auth(MaintenanceUpdate.as_view()),
name="maintenance.update",
),
url(
r"^equipment-(?P<equipment_pk>\d+)/maintenance-(?P<pk>\d+)/delete",
office_auth(MaintenanceDelete.as_view()),
name="maintenance.delete",
),
]
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app/core/models.py | echosisdev/openmrs-disa-sync | 0 | 11932 | from django.db import models
from django.db.models.signals import pre_save, post_save
from core.utils.constants import Constants
from core.utils.data_convertion import DataConversion
class ExcelFile(models.Model):
file_name = models.FileField(upload_to='uploads')
date_created = models.DateTimeField(auto_now_add=True)
activated = models.BooleanField(default=False)
def __str__(self):
return f'File Id{self.id} File name {self.file_name}'
class CsvFile(models.Model):
file_name = models.FileField(upload_to='uploads')
date_uploaded = models.DateTimeField(auto_now_add=True)
activated = models.BooleanField(default=False)
def __str__(self):
return f'File Id{self.id} File name {self.file_name}'
class ViralLoad(models.Model):
laboratory_id = models.CharField(max_length=100, null=True, blank=True)
sector = models.CharField(max_length=30, blank=True, null=True)
number_orig_lab = models.CharField(max_length=100, blank=True, null=True)
province = models.CharField(max_length=100, blank=True, null=True)
district = models.CharField(max_length=100, blank=True, null=True)
health_facility = models.CharField(max_length=100, blank=True, null=True)
patient_name = models.CharField(max_length=100, blank=True, null=True)
gender = models.CharField(max_length=100, blank=True, null=True)
reference = models.CharField(max_length=100, blank=True, null=True)
capture_date = models.DateField(null=True, blank=True)
access_date = models.DateField(null=True, blank=True)
nid = models.CharField(max_length=100, blank=True, null=True)
viral_load = models.CharField(max_length=100, null=True, blank=True)
viral_load_qualitative = models.CharField(
max_length=100, blank=True, null=True)
synced = models.BooleanField(default=False)
formatted_nid = models.CharField(max_length=100, blank=True, null=True)
class Meta:
verbose_name = 'Viral Load'
verbose_name_plural = 'Viral Loads'
def __str__(self):
return self.patient_name
class Patient(models.Model):
patient_uuid = models.CharField(max_length=500)
#person_id = models.IntegerField()
nid = models.CharField(max_length=100, blank=True, null=True)
patient_name = models.CharField(max_length=100, blank=True, null=True)
def __str__(self):
return self.patient_name
class Encounter(models.Model):
encounterDatetime = models.DateTimeField(auto_now_add=True)
patient = models.ForeignKey(Patient, on_delete=models.CASCADE)
encounterType_uuid = models.CharField(
max_length=255, default=Constants().get_uuids().get('encounter_type'))
location_uuid = models.CharField(
max_length=255, default=Constants().get_uuids().get('hpt'))
form_uuid = models.CharField(
max_length=255, default=Constants().get_uuids().get('form'))
synced = models.BooleanField(default=False)
def __str__(self):
return self.patient.name
class Observation(models.Model):
patient = models.ForeignKey(
Patient, on_delete=models.CASCADE)
obsDateTime = models.DateTimeField(auto_now_add=True)
concept = models.CharField(max_length=255)
value_numeric = models.PositiveIntegerField(null=True, blank=True)
value_coded = models.PositiveIntegerField(null=True, blank=True)
value_datetime = models.DateTimeField(null=True, blank=True)
encounter = models.ForeignKey(Encounter, on_delete=models.CASCADE)
location = models.CharField(
max_length=255, default=Constants().get_uuids().get('hpt'))
value = models.CharField(max_length=255)
voided = models.BooleanField(default=False)
synced = models.BooleanField(default=False)
def __str__(self):
return self.id
# def insert_formatted_nid(sender, instance, created, *args, **kwargs):
# if created:
# instance.formatted_nid = DataConversion.format_nid(instance.nid)
# print(instance.formatted_nid)
# post_save.connect(insert_formatted_nid, sender=ViralLoad)
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karte.py | goodmanjonathan/kattis-problems | 0 | 52183 | <filename>karte.py
import sys
def replicate(n, x):
ret = []
for _ in range(n):
ret.append(x)
return ret
line = input()
cards = replicate(53, False)
for i in range(0, len(line), 3):
card_num = int(line[i+1:i+3])
offset = 0
if line[i] == 'P':
pass
elif line[i] == 'K':
offset = 13
elif line[i] == 'H':
offset = 26
else:
offset = 39
if cards[offset + card_num] is True:
print("GRESKA")
sys.exit(0)
else:
cards[offset + card_num] = True
suits = [cards[1:14], cards[14:27], cards[27:40], cards[40:53]]
for (idx, suit) in enumerate(suits):
if idx != 0:
print(end=" ")
print(len(list(filter(lambda card: card is False, suit))), end="")
print()
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glmsingle/utils/robustrange.py | gretatuckute/GLMsingle | 35 | 78064 | <gh_stars>10-100
import numpy as np
def robustrange(m):
"""
robustrange(m)
<m> is an array
figure out a reasonable range for the values in <m>,
that is, one that tries to include as many of the values
as possible, but also tries to exclude the effects of potential
outliers (so that we don't get a really large range).
see the code for specific details on how we do this.
return:
<f> as [<mn> <mx>]
<mn> as the minimum value of the range
<mx> as the maximum value of the range
example:
import matplotlib.pyplot as plt
x = np.random.randn(10000)**2
plt.hist(x,100)
rng = robustrange(x)[0]
plt.plot(
[rng[0], rng[0]],
plt.ylim(),
color='r',
linestyle='-',
linewidth=2)
plt.plot(
[rng[1], rng[1]],
plt.ylim(),
color='r',
linestyle='-',
linewidth=2)
plt.title(f'range is {rng[0]:.20f} {rng[1]:.20f}')
"""
# absolute min and max
absmn = np.min(m.flatten())
absmx = np.max(m.flatten())
# percentiles
vals = np.percentile(m.flatten(), [.1, 10, 50, 90, 99.9])
# percentile-based min and max
pmn = vals[2] - 5*(vals[2]-vals[1])
pmx = vals[2] + 5*(vals[3]-vals[2])
# whether to rerun (recursively)
rerun = 0
# deal with max
if vals[4] <= pmx: # if the 99.9 is reasonably small, use it
if absmx <= vals[2] + 1.1*(vals[4]-vals[2]):
# actually, if the absolute max isn't too big, use that
finalmx = absmx
else:
finalmx = vals[4]
else:
# hmm, something is funny. probably there are outliers.
# let's chop off and re-run.
rerun = 1
m = m[np.logical_not(m > pmx)]
# deal with min
if vals[0] >= pmn:
if absmn >= vals[2] - 1.1*(vals[2]-vals[0]):
finalmn = absmn
else:
finalmn = vals[0]
else:
rerun = 1
m = m[np.logical_not(m < pmn)]
# rerun without outliers and output
if rerun:
f, mn, mx = robustrange(m)
return f, mn, mx
else:
f = [finalmn, finalmx]
mn = finalmn
mx = finalmx
return f, mx, mn
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directory/factories.py | arogachev/dgtt | 0 | 94888 | <reponame>arogachev/dgtt
from functools import reduce
from random import randint
from django.contrib.gis.geos import Point
import factory
from faker.providers import BaseProvider
from .models import Building, Category, Organization
LOCALE = 'ru_RU'
class CoordinatesProvider(BaseProvider):
CENTER_COORDINATES = (54.873950, 69.152105)
RADIUS = 5
def coordinates(self):
latitude = factory.Faker('geo_coordinate', center=self.CENTER_COORDINATES[0], radius=self.RADIUS).generate({})
longitude = factory.Faker('geo_coordinate', center=self.CENTER_COORDINATES[1], radius=self.RADIUS).generate({})
return Point((latitude, longitude))
class CategoryProvider(BaseProvider):
WORDS_COUNT_MIN = 1
WORDS_COUNT_MAX = 3
INSTANCES_COUNT_MIN = 1
INSTANCES_COUNT_MAX = 3
def __init__(self, generator):
super().__init__(generator)
self._iterator = factory.Iterator(Category.objects.order_by('pk').all())
def category_name(self):
words_count = randint(self.WORDS_COUNT_MIN, self.WORDS_COUNT_MAX)
words = factory.Faker('words', nb=words_count).generate({})
return ' '.join(words).capitalize()
def category_instances(self):
count = randint(self.INSTANCES_COUNT_MIN, self.INSTANCES_COUNT_MAX)
return tuple(self._iterator.evaluate(None, None, None) for _ in range(count))
class PhonesProvider(BaseProvider):
COUNT_MIN = 1
COUNT_MAX = 3
def phones(self):
count = randint(self.COUNT_MIN, self.COUNT_MAX)
return [factory.Faker('phone_number').generate({}) for _ in range(count)]
factory.Faker._DEFAULT_LOCALE = LOCALE
factory.Faker.add_provider(CoordinatesProvider)
factory.Faker.add_provider(CategoryProvider)
factory.Faker.add_provider(PhonesProvider)
class BuildingFactory(factory.django.DjangoModelFactory):
class Meta:
model = Building
address = factory.Faker('address')
coordinates = factory.Faker('coordinates')
class CategoryFactory(factory.django.DjangoModelFactory):
class Meta:
model = Category
name = factory.Faker('category_name')
@classmethod
def create_batch_tree(cls, children_per_level):
items_per_level = tuple(
reduce(lambda x, y: x * y, children_per_level[:level + 1])
for level, _ in enumerate(children_per_level)
)
categories_map = {level: [] for level, _ in enumerate(children_per_level)}
prev_level_items_count = 0
for level, items_count in enumerate(items_per_level):
prev_level = level - 1
for item_number in range(items_count):
category = CategoryFactory.build()
if prev_level >= 0:
category.parent = categories_map[prev_level][item_number % prev_level_items_count]
category.save()
categories_map[level].append(category)
prev_level_items_count = items_count
class OrganizationFactory(factory.django.DjangoModelFactory):
class Meta:
model = Organization
name = factory.Faker('company')
phones = factory.Faker('phones')
building = factory.Iterator(Building.objects.order_by('pk').all())
@classmethod
def create_batch(cls, size, **kwargs):
return [cls.create(categories=factory.Faker('category_instances'), **kwargs) for _ in range(size)]
@factory.post_generation
def categories(self, create, extracted, **kwargs):
if not create:
return
if extracted:
for category in extracted:
self.categories.add(category)
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flashpandas/__init__.py | MaxTechniche/flash-pandas | 0 | 135779 | <reponame>MaxTechniche/flash-pandas<filename>flashpandas/__init__.py<gh_stars>0
import time
import dash_bootstrap_components as dbc
import dash_core_components as dcc
import dash_html_components as html
from flask import session
from dash.dependencies import Output, State, Input
from .app import APP, users, cards
from .pages import home, learn, test, login, signup, search, create, signout, profile
app = APP
server = app.server
my_blue = "#C8E4F4"
user_details = html.Div(id="user-details", style={"display": "none"})
url = dcc.Location(id="url")
navbar = dbc.NavbarSimple(
children=[
dbc.NavLink("Cards", href="/cards"),
# dbc.NavLink('Test', href='/test'),
dbc.NavLink("Create", href="/create", disabled=True, id="create-link"),
dbc.DropdownMenu(
children=[
dbc.DropdownMenuItem("Login", href="/login"),
dbc.DropdownMenuItem("Create Account", href="/signup"),
],
id="account-dropdown",
label="Account",
nav=True,
style={"margin-right": "20px"},
),
],
brand="Flash-Pandas",
brand_href="/",
sticky="top",
style={"margin": "0px", "margin-left": "20px", "margin-right": "20px"},
)
page = html.Div(id="page-content", style={"margin": "1rem"})
footer = dbc.Col(
[
"Built by <NAME> with Dash.",
html.Div(
[
html.A(
dbc.Button(
"YouTube", id="youtube", color="danger", outline=True, size="sm"
),
href="https://youtube.com/MaxTechniche",
style={"margin": "1%"},
),
html.A(
dbc.Button(
"GitHub", id="github", color="dark", outline=True, size="sm"
),
href="https://github.com/MaxTechniche",
style={"margin": "1%"},
),
],
style={"margin-top": "5px"},
),
],
style={"text-align": "center", "margin-bottom": "15px"},
)
app.layout = dbc.Container(
[user_details, url, navbar, page, footer],
style={"word-wrap": "break-word", "position": "relative", "min-height": "95vh"},
)
@app.callback(
[
Output("create-link", "disabled"),
Output("account-dropdown", "children"),
Output("page-content", "children"),
],
Input("url", "pathname"),
)
def display_page(pathname):
n_layout = None
if pathname == "/":
n_layout = [home.layout]
if pathname == "/login":
if session.get("username", None):
n_layout = [login.logged_in_layout]
else:
n_layout = [login.logged_out_layout]
if pathname == "/signup":
n_layout = [signup.layout]
if pathname in ["/signout", "/logout"]:
session.pop("username", None)
time.sleep(1)
n_layout = [home.layout]
if pathname == "/create":
if not session.get("username", None):
n_layout = [create.logged_out_layout]
else:
n_layout = [create.layout]
if pathname == "/cards":
n_layout = [learn.layout]
if not n_layout:
try:
n_layout = [globals()[f"{ pathname.replace('/', '') }"].layout]
except KeyError:
n_layout = html.Div("Path not found.", style={"text-align": "center"})
c_link = get_create_link()
a_drop = get_account_dropdown()
return [c_link, a_drop, n_layout]
def get_create_link():
if session.get("username", None):
return False
return True
def get_account_dropdown():
if session.get("username", None):
return [
dbc.DropdownMenuItem("Profile", href="/profile"),
dbc.DropdownMenuItem("Sign Out", href="/signout"),
]
else:
return [
dbc.DropdownMenuItem("Login", href="/login"),
dbc.DropdownMenuItem("Create Account", href="/signup"),
]
def get_page_content():
pass
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config/experiments.b.py | shibaji7/model.CODE_BASE | 0 | 155305 | #!/usr/bin/env python
"""experiments.py: experiments python program for different experiment applications"""
__author__ = "<NAME>."
__copyright__ = "Copyright 2020, SuperDARN@VT"
__credits__ = []
__license__ = "MIT"
__version__ = "1.0."
__maintainer__ = "<NAME>."
__email__ = "<EMAIL>"
__status__ = "Research"
import matplotlib
matplotlib.use("Agg")
import matplotlib.dates as mdates
import matplotlib.pyplot as plt
plt.style.use("config/alt.mplstyle")
import sys
sys.path.append("models/")
sys.path.append("models/experiments/")
import os
import numpy as np
import argparse
import pandas as pd
import datetime as dt
from netCDF4 import Dataset, num2date
from dateutil import parser as dparser
import glob
import xarray
import statsmodels.api as sm
from statsmodels.formula.api import ols
from constant import *
import utils
from absorption import *
import case0
from model import Model
fontT = {"family": "serif", "color": "k", "weight": "normal", "size": 8}
font = {"family": "serif", "color": "black", "weight": "normal", "size": 10}
from matplotlib import font_manager
ticks_font = font_manager.FontProperties(family="serif", size=10, weight="normal")
matplotlib.rcParams["xtick.color"] = "k"
matplotlib.rcParams["ytick.color"] = "k"
matplotlib.rcParams["xtick.labelsize"] = 10
matplotlib.rcParams["ytick.labelsize"] = 10
matplotlib.rcParams["mathtext.default"] = "default"
def coloring_axes(ax, atype="left", col="red", fmtr="%H", ivl=60):
ax.spines[atype].set_color(col)
ax.tick_params(axis="y", which="both", colors=col)
ax.yaxis.label.set_color(col)
fmt = matplotlib.dates.DateFormatter(fmtr)
ax.xaxis.set_major_formatter(fmt)
ax.xaxis.set_major_locator(mdates.MinuteLocator(interval=ivl))
return ax
def coloring_twaxes(ax, atype="left", col="red", twcol="k", fmtr="%H", ivl=60):
ax.spines[atype].set_color(col)
ax.tick_params(axis="y", which="both", colors=twcol)
ax.yaxis.label.set_color(twcol)
fmt = matplotlib.dates.DateFormatter(fmtr)
ax.xaxis.set_major_formatter(fmt)
ax.xaxis.set_major_locator(mdates.MinuteLocator(interval=ivl))
return ax
def _case0_(args):
""" Impact of the I0 and frequency """
chi = np.deg2rad(np.linspace(0,90,91))
f0 = 10**np.linspace(-6,-1,31) * 1e3
fo = 10**np.linspace(np.log10(.1), np.log10(200), 100)
ev, start, end = dt.datetime(2015,3,11,16,22), dt.datetime(2015,3,11,15,30), dt.datetime(2015,3,11,17,30)
l, r = 52, 53
_f0_ = case0._Case0_(start, end)[40:53]
fname = "data/sim/case0.nc.gz"
os.system("gzip -d "+fname)
_nc = Dataset(fname.replace(".gz", ""))
os.system("gzip "+fname.replace(".gz", ""))
pg = utils.PointGrid("ott", ev, start, end, 30, v=False)
_lo_,_qo_ = [],[]
b = pg.igrf["B"][l:r,:]
pg._col_.nu_FT = pg._col_.nu_FT[l:r,:]
pg._col_.nu_av_CC = pg._col_.nu_av_CC[l:r,:]
pg._col_.nu_av_MB = pg._col_.nu_av_MB[l:r,:]
pg._col_.nu_SN["total"] = pg._col_.nu_SN["total"][l:r,:]
ne = _nc.variables["ne"][l:r,:]
for _f_ in fo:
print(" Frequency - ", _f_, " MHz")
u = Absorption(b, pg._col_, ne, fo=_f_*1e6)
_lo_.append([utils.int_absorption(u.AH["SN"]["O"], pg.alts, extpoint=68, llim = 60, ulim = 110),
utils.int_absorption(u.AH["AV_CC"]["O"], pg.alts, extpoint=64, llim = 60, ulim = 110),
utils.int_absorption(u.AH["AV_MB"]["O"], pg.alts, extpoint=64, llim = 60, ulim = 110),
utils.int_absorption(u.SW["FT"]["O"], pg.alts, extpoint=64, llim = 60, ulim = 110)])
continue
_lo_ = np.array(_lo_)
ne = _nc.variables["ne"][40:53,:]
nfo = np.linspace(1,70,50)
for i, _ in enumerate(_f0_):
_k_ = []
for _f_ in nfo:
print(" Frequency, I - ", _f_, " MHz,", _f0_[i], "W/m2")
u = Absorption(b, pg._col_, ne[i:i+1,:], fo=_f_*1e6)
_k_.append([utils.int_absorption(u.AH["SN"]["O"], pg.alts, extpoint=68, llim = 60, ulim = 110),
utils.int_absorption(u.AH["AV_CC"]["O"], pg.alts, extpoint=64, llim = 60, ulim = 110),
utils.int_absorption(u.AH["AV_MB"]["O"], pg.alts, extpoint=64, llim = 60, ulim = 110),
utils.int_absorption(u.SW["FT"]["O"], pg.alts, extpoint=64, llim = 60, ulim = 110)])
_k_ = np.array(_k_)[:,:,0]
_qo_.append([10**utils.extrap1d(_k_[:,0], np.log10(nfo))([1])[0],
10**utils.extrap1d(_k_[:,1], np.log10(nfo))([1])[0],
10**utils.extrap1d(_k_[:,2], np.log10(nfo))([1])[0],
10**utils.extrap1d(_k_[:,3], np.log10(nfo))([1])[0]])
_qo_ = np.array(_qo_)
haf0 = 93.5 * (f0**0.25)
l0 = 4.37e3 * (.22**0.5) / (fo)**2
haf1 = 10*np.log10(f0*1e-3) + 65
l1 = ((10*np.log10(2.2e-4) + 65)/fo)**1.5
matplotlib.rcParams["xtick.labelsize"] = 10
matplotlib.rcParams["ytick.labelsize"] = 10
matplotlib.rcParams["mathtext.default"] = "default"
font = {"family": "serif", "color": "black", "weight": "normal", "size": 10}
fonttext = {"family": "serif", "color": "blue", "weight": "normal", "size": 10}
#fig, axes = plt.subplots(figsize=(6, 6), nrows=2, ncols=2, dpi=150)
#fig.subplots_adjust(hspace=.3, wspace=.1)
fig, ax = plt.subplots(figsize=(3, 3), nrows=1, ncols=1, dpi=100)
#ax = axes[0,0]
#ax.loglog(f0*1e-3, haf0, "r", linewidth=1.2, label="Sato (1975)")
#ax.loglog(f0*1e-3, haf1, "b", linewidth=1.2, label="DARP2")
#ax.set_ylabel("HAF, MHz", fontdict=font)
#ax.set_xlim(1e-6,1e-1)
#ax.legend(loc=2, scatterpoints=3, fontsize=8, frameon=True)
#ax.text(0.2, 1.05, r"(a) $\chi=0^o$", horizontalalignment="center", verticalalignment="center", transform=ax.transAxes, fontdict=fonttext)
#ax = axes[0,1]
#ax.set_yticks([])
#ax = ax.twinx()
#ax.loglog(fo, l0, "r", linewidth=1.2, label="Sato (1975)")
ax.loglog(fo, l1, "darkred", ls="--", linewidth=0.8, label="DARP")
ax.set_xlim(1,200)
ax.set_ylim(1,1e5)
ax.set_ylabel("Absorption, dB", fontdict=font)
#ax.legend(loc=1, scatterpoints=3, fontsize=8, frameon=True)
ax.text(0.5, 1.05, r"$\chi=0^o$, $I_{\infty}=2.2\times 10^{-4}$ $Wm^{-2}$", horizontalalignment="center", verticalalignment="center", transform=ax.transAxes, fontdict=fonttext)
#ax = axes[1,0]
#ax.loglog(_f0_, _qo_[:,0], "ro", markersize=1.2, label=r"$\beta_{ah}(\nu_{sn})$")
#ax.loglog(_f0_, _qo_[:,1], "go", markersize=0.8, label=r"$\beta_{ah}(\nu_{av}^{cc})$")
#ax.loglog(_f0_, _qo_[:,2], "bo", markersize=1.2, label=r"$\beta_{ah}(\nu_{av}^{mb})$")
#ax.loglog(_f0_, _qo_[:,3], "ko", markersize=1.2, label=r"$\beta_{sw}(\nu_{me})$")
#ax.set_ylabel("HAF, MHz", fontdict=font)
#ax.set_xlabel(r"SXR, $Wm^{-2}$", fontdict=font)
#ax.set_xlim(1e-6,1e-1)
#ax.legend(loc=2, scatterpoints=3, fontsize=8, frameon=True)
#ax.text(0.2, 1.05, r"(b) $\chi=0^o$", horizontalalignment="center", verticalalignment="center", transform=ax.transAxes, fontdict=fonttext)
#ax = axes[1,1]
ax.set_xlabel("Frequency, MHz", fontdict=font)
#ax.set_yticks([])
#ax = ax.twinx()
ax.loglog(fo, utils.smooth(_lo_[:,0,0], 11), "r", linewidth=1.2, label=r"$\beta_{ah}(\nu_{sn})$")
ax.loglog(fo, utils.smooth(_lo_[:,1,0], 11), "g", linewidth=0.8, label=r"$\beta_{ah}(\nu_{av}^{cc})$")
ax.loglog(fo, utils.smooth(_lo_[:,2,0], 11), "b", linewidth=1.2, label=r"$\beta_{ah}(\nu_{av}^{mb})$")
ax.loglog(fo, utils.smooth(_lo_[:,3,0], 11), "k", linewidth=1.2, label=r"$\beta_{sw}(\nu_{me})$")
ax.set_ylim(1,1e5)
ax.set_xlim(1,200)
ax.set_ylabel("Absorption, dB", fontdict=font)
ax.legend(loc=1, scatterpoints=3, fontsize=8, frameon=True)
ax.text(0.5, 1.05, r"$\chi=0^o$, $I_{\infty}=2.2\times 10^{-4}$ $Wm^{-2}$", horizontalalignment="center", verticalalignment="center", transform=ax.transAxes, fontdict=fonttext)
fig.savefig("_images_/case0.png", bbox_inches="tight")
return
def _case1_(args):
""" Impact of special event case study """
evs, rs, starts, ends = [dt.datetime(2017,9,5), dt.datetime(2017,9,6), dt.datetime(2017,9,7)],\
["sps","sps","sps"],\
[dt.datetime(2017,9,5,17), dt.datetime(2017,9,6,11), dt.datetime(2017,9,7,13,30)],\
[dt.datetime(2017,9,5,19,30), dt.datetime(2017,9,6,17), dt.datetime(2017,9,7,19)]
for ev, r, start, end in zip(evs, rs, starts, ends):
if args.prog == "bgc":
cmd = "python simulate.py -p bgc -r {r} -ev {ev} -s {s} -e {e} -v -fr {fr}".format(r=r,
ev=ev.strftime("%Y-%m-%dT%H:%M"), s=start.strftime("%Y-%m-%dT%H:%M"),
e=end.strftime("%Y-%m-%dT%H:%M"), fr=5.24)
print(" "+ cmd)
os.system(cmd)
elif args.prog == "flare":
cmd = "python simulate.py -p flare -r {r} -ev {ev} -s {s} -e {e} -v -fr {fr} -rm".format(r=r,
ev=ev.strftime("%Y-%m-%dT%H:%M"), s=start.strftime("%Y-%m-%dT%H:%M"),
e=end.strftime("%Y-%m-%dT%H:%M"), fr=5.24)
print(" "+ cmd)
os.system(cmd)
if args.prog == "plot":
fmt = matplotlib.dates.DateFormatter("%H")
fig, axes = plt.subplots(figsize=(9, 5), nrows=2, ncols=3, dpi=150)
fig.subplots_adjust(hspace=.1, wspace=.3)
i = 0
CC = ["M2.3", "X9.3", "X1.7"]
for ev, start, end in zip(evs, starts, ends):
_X_ = pd.read_csv("config/dat/case1.ev{t}.csv".format(t=i))
_X_["dt"] = [ev + dt.timedelta(hours=h) for h in _X_.dt]
_X_ = _X_.sort_values(by=["dt"])
ax = axes[0,i]
gos = utils.read_goes(ev)
col = "r"
ax = coloring_axes(ax, col="k")
ax.semilogy(gos.date,gos.B_AVG,col,linewidth=0.75, label="SXR (.1-.8 nm)")
ax.semilogy(gos.date,gos.A_AVG,"b",linewidth=0.75, label="HXR (.05-.4 nm)")
if i==2: ax.legend(bbox_to_anchor=(1.4, 0.5), scatterpoints=3, ncol=1, fontsize=8, frameon=True)
ax.set_ylim(1e-8,1e-3)
ax.set_yticks([1e-8, 1e-7, 1e-6, 1e-5, 1e-4,1e-3])
ax.set_xlim(start,end)
if i==0: ax.set_ylabel(r"Solar Flux, $Wm^{-2}$",fontdict=font)
font["color"] = "k"
font["color"] = "darkgreen"
ax.text(0.5,1.05,"%s, %s"%(ev.strftime("%d %b %Y"), CC[i]),horizontalalignment="center",
verticalalignment="center", transform=ax.transAxes,fontdict=font)
font["color"] = "k"
ax = axes[1,i]
ax = coloring_axes(ax, col="k")
if i==0:
ax.set_ylabel("Observations \n HF Absorption, db",fontdict=font)
ax.scatter(_X_[_X_.model=="N"].dt, _X_[_X_.model=="N"].db, s=3., color="gray", alpha=0.8, marker="D", label="Ionosonde")
#ax.legend(loc=1, scatterpoints=3, fontsize=8, frameon=True)
#ax.text(0.35, 1.05, "(a.%d) "%(i+1) + ev.strftime("%Y-%m-%d")+" UT", horizontalalignment="center",
# verticalalignment="center", transform=ax.transAxes, fontdict=fonttext)
fname = "data/sim/{date}/flare.sps.nc.gz".format(date=ev.strftime("%Y.%m.%d.%H.%M"))
os.system("gzip -d " + fname)
nc = Dataset(fname.replace(".gz",""))
os.system("gzip " + fname.replace(".gz",""))
times = num2date(nc.variables["time"][:], nc.variables["time"].units, nc.variables["time"].calendar)
times = np.array([x._to_real_datetime() for x in times]).astype("datetime64[ns]")
times = [dt.datetime.utcfromtimestamp(x.astype(int) * 1e-9) for x in times]
ax.plot(times, 2*nc.variables["drap"][:], "darkred", ls="--", linewidth=0.8, label="DRAP2")
ax.plot(times, 2*utils.int_absorption(nc.variables["abs.ah.sn.o"][:], model["alts"], extpoint=68), "r",
linewidth=1.2, label=r"$\beta_{ah}(\nu_{sn})$")
ax.plot(times, 2*utils.int_absorption(nc.variables["abs.ah.av.cc.o"][:], model["alts"], extpoint=64), "g",
linewidth=0.8, label=r"$\beta_{ah}(\nu_{av}^{cc})$")
ax.plot(times, 2*utils.int_absorption(nc.variables["abs.ah.av.mb.o"][:], model["alts"], extpoint=64), "b",
linewidth=1.2, label=r"$\beta_{ah}(\nu_{av}^{mb})$")
ax.plot(times, 2*utils.int_absorption(nc.variables["abs.sw.ft.o"][:], model["alts"], extpoint=64), "k",
linewidth=0.8, label=r"$\beta_{ah}(\nu_{av}^{cc})$")
ax.set_xlim(start, end)
ax.scatter(_X_[_X_.model=="Y"].dt, _X_[_X_.model=="Y"].db, s=1.2, color="darkred",
alpha=0.8, label="Levine et al. (2019)")
if i==2: ax.legend(bbox_to_anchor=(1.12, 0.9), scatterpoints=3, fontsize=8, frameon=True)
#ax.text(0.5, 1.05, "(b.%d) "%(i+1) + ev.strftime("%Y-%m-%d")+" UT, @6.4 MHz", horizontalalignment="center",
# verticalalignment="center", transform=ax.transAxes, fontdict=fonttext)
i += 1
axes[1,0].set_xlabel("Time (UT)", fontdict=font)
axes[1,1].set_xlabel("Time (UT)", fontdict=font)
axes[1,2].set_xlabel("Time (UT)", fontdict=font)
font["color"] = "k"
fig.autofmt_xdate(rotation=25,ha="center")
fig.savefig("_images_/case1.png", bbox_inches="tight")
return
def _case2_(args):
""" Testing electron temperature dependence """
args.event, args.rio, args.start, args.end = dt.datetime(2011,9,7,22,38), "mcmu",\
dt.datetime(2011,9,7,22,10), dt.datetime(2011,9,7,23,20)
start, end = dt.datetime(2011,9,7,22,30), dt.datetime(2011,9,7,23,0)
TElec = np.linspace(0.75,1.75,101)
if args.prog == "bgc":
cmd = "python simulate.py -p bgc -r {r} -ev {ev} -s {s} -e {e} -v".format(r=args.rio,
ev=args.event.strftime("%Y-%m-%dT%H:%M"), s=args.start.strftime("%Y-%m-%dT%H:%M"),
e=args.end.strftime("%Y-%m-%dT%H:%M"))
print(" "+ cmd)
os.system(cmd)
elif args.prog == "flare":
for t in TElec:
print(" TElec:", t)
Model(args.rio, args.event, args)._exp_("TElec", {"TElec": t})
elif args.prog == "plot":
matplotlib.rcParams["xtick.labelsize"] = 6
matplotlib.rcParams["ytick.labelsize"] = 6
matplotlib.rcParams["mathtext.default"] = "default"
font = {"family": "serif", "color": "black", "weight": "normal", "size": 6}
fonttext = {"family": "serif", "color": "blue", "weight": "normal", "size": 6}
fmt = matplotlib.dates.DateFormatter("%H:%M")
fig, axes = plt.subplots(figsize=(6, 2), nrows=1, ncols=2, dpi=100)
#ax = axes[0]
#import bootstrapped.bootstrap as bs
#import bootstrapped.stats_functions as bs_stats
#from scipy.stats import norm
#x = np.linspace(0.5,2,151)
#loc = bs.bootstrap(x, stat_func=bs_stats.mean).value
#scale = bs.bootstrap(x, stat_func=bs_stats.std).value
#ax.plot(x, norm.pdf(x, loc=loc, scale=scale), "r", lw=0.8, alpha=0.6)
#ax.text(0.5, 1.05, r"(a) Distribution of $T_d$", horizontalalignment="center",
# verticalalignment="center", transform=ax.transAxes, fontdict=fonttext)
files = glob.glob("data/sim/{dn}/flare*TElec*".format(dn=args.event.strftime("%Y.%m.%d.%H.%M")))
ax = axes[0]
ax.xaxis.set_major_formatter(fmt)
files.sort()
X = []
_abs_ = utils.read_riometer(args.event, args.rio)
_abs_ = _abs_[(_abs_.date > start) & (_abs_.date < end-dt.timedelta(minutes=1))]
cmap = matplotlib.cm.get_cmap("Reds")
Mx = np.zeros((int((end-start).total_seconds()/60), len(files)))
for i,f in enumerate(files):
os.system("gzip -d " + f)
nc = Dataset(f.replace(".gz", ""))
os.system("gzip " + f.replace(".gz", ""))
times = num2date(nc.variables["time"][:], nc.variables["time"].units, nc.variables["time"].calendar)
times = np.array([x._to_real_datetime() for x in times]).astype("datetime64[ns]")
times = [dt.datetime.utcfromtimestamp(x.astype(int) * 1e-9) for x in times]
#if np.mod(i,20)==0: ax.plot(times, utils.smooth(utils.int_absorption(nc.variables["abs.ah.sn.o"][:],
# model["alts"], extpoint=68), 5), color=cmap(.2+(i/200)),
# linewidth=0.6, ls="--", label=r"$T_d$=%.2f"%TElec[i])
m = pd.DataFrame()
m["date"] = times
m["hf_abs"] = utils.smooth(utils.int_absorption(nc.variables["abs.ah.sn.o"][:], model["alts"], extpoint=68), 5)
m = m[(m.date >= start) & (m.date < end)]
Mx[:,i] = m.hf_abs.tolist()
e = utils.estimate_error(m, _abs_)
X.append(e)
ax.plot(_abs_.date, _abs_.hf_abs, "ko", alpha=0.4, markersize=0.1, label=r"$\beta_{R}$", lw=.4)
mn, st = 1.2*np.median(Mx, axis=1), 1.98*np.std(Mx, axis=1)
ax.plot(m.date, mn, color="r", linewidth=0.8, ls="--", label=r"$\beta_m$")
ax.fill_between(m.date, mn - st, mn + st, color="r", alpha=0.5, label="95% CI")
X = np.array(X)
ax.set_xlim(start, end)
ax.text(0.5, 1.05, r"(b) %s UT, %s @30 MHz, $T_d=\frac{T^{90}}{T^{90}_{base}}$"%(args.event.strftime("%Y-%m-%d"),
args.rio.upper()), horizontalalignment="center",
verticalalignment="center", transform=ax.transAxes, fontdict=fonttext)
ax.set_ylim(-.1,2.5)
ax.legend(loc=1, scatterpoints=3, fontsize=4, ncol=1, frameon=True)
ax.set_xlabel("Time (UT)", fontdict=font)
ax.set_ylabel("Absorption, dB", fontdict=font)
ax = axes[1]
ax.grid(False, axis="y")
ax.set_xlabel(r"Temperature ratio, $\frac{T^{90}}{T^{90}_{base}}$", fontdict=font)
ax.set_yticklabels([])
ax = ax.twinx()
ax.plot(TElec, X, "ro", markersize=0.3, alpha=.6)
ax.set_xlim(.75,1.75)
ax.axvline(TElec[np.argmin(X)], ls="--", lw=0.4, color="b")
ax.set_ylabel("RMSE", fontdict=font)
ax.text(0.5, 1.05, "(c) Impact of Temperature on RMSE", horizontalalignment="center",
verticalalignment="center", transform=ax.transAxes, fontdict=fonttext)
fonttext["size"] = 4
ax.text(TElec[np.argmin(X)], 0.745, r"$T_d$=%.2f"%TElec[np.argmin(X)], horizontalalignment="center",
verticalalignment="center", fontdict=fonttext, rotation=90)
fig.autofmt_xdate()
fig.savefig("_images_/case2.png", bbox_inches="tight")
return
def _stats_(args):
""" Estimate and plot statistics """
x = pd.read_csv("config/flare.stats.m.csv")
x.dn = [dt.datetime.strptime(t,"%Y.%m.%d.%H.%M") for t in x.dn]
if args.prog == "plot":
matplotlib.rcParams["xtick.labelsize"] = 12
matplotlib.rcParams["ytick.labelsize"] = 12
matplotlib.rcParams["mathtext.default"] = "default"
font = {"family": "serif", "color": "black", "weight": "normal", "size": 12}
fonttext = {"family": "serif", "color": "blue", "weight": "normal", "size": 12}
fig1, axes1 = plt.subplots(figsize=(9, 12), nrows=4, ncols=3, dpi=90, sharey="row", sharex="col")
edist = {}
for j, nm in enumerate(["sn","cc","mb","me"]):
df = []
name = "mRMSE_"+nm
for i, row in x.iterrows():
stn = row["rio"]
f = "data/sim/archive/{dn}/skills.{rio}.nc".format(dn=row["dn"].strftime("%Y.%m.%d.%H.%M"), rio=stn)
d = xarray.open_dataset(f)
d.attrs.update({"acc": 1-(d.attrs[name]/d.attrs["mRMSE_dr"]),
name: (d.attrs[name]), "sza": np.median(d["sza"].values),
"local_time": np.median(d["local_time"].values), "mlt": np.mean(d["mlt"].values)})
df.append(d.attrs)
#print(d.attrs["dPeak"]-d.attrs["mPeak_"+nm])
df = pd.DataFrame.from_records(df)
ux = df[np.abs(df["dPeak"]-d.attrs["mPeak_dr"])<.8]
print(np.corrcoef(ux.dPeak, ux["mPeak_dr"]), len(ux))
df = df[~df.isin([np.nan, np.inf, -np.inf]).any(1)]
model = ols("acc ~ sza+local_time+mlt+mlat", data=df)
#model = ols(name + "~ sza*local_time*mlt*mlat", data=df)
response = model.fit()
anova = sm.stats.anova_lm(response, typ=2)
edist[nm] = df.acc.tolist()
print(anova)
#print(response.summary())
ax = axes1[j, 0]
sza, acc = running_mean(df.sza, df.acc, dx=5)
ax.plot(df.sza, df.acc, "ro", alpha=0.5, markersize=0.75)
#x = _create_x_(df.cossza.tolist(), np.mean(df.lat), np.mean(df.logfmax), np.mean(df["lt"]), lp="cossza")
#o = r.get_prediction(x[["sza","mlt",""]].values)
#m, v = o.predicted_mean, np.sqrt(o.var_pred_mean)
#ax.plot(df.sza, o.predicted_mean, "r-", linewidth=0.75, alpha=0.8)
#ax.fill_between(df.sza, m - 1.98*v, m + 1.98*v, color="r", alpha=0.2)
ax = axes1[j, 1]
ax.plot(df.local_time, df.acc, "ro", alpha=0.5, markersize=0.75)
ax = axes1[j, 2]
ax.plot(df.mlt, df.acc, "ro", alpha=0.5, markersize=0.75)
axes1[0,0].set_ylabel("RMSE", fontdict=font)
axes1[1,0].set_ylabel("RMSE", fontdict=font)
axes1[2,0].set_ylabel("RMSE", fontdict=font)
axes1[3,0].set_ylabel("RMSE", fontdict=font)
axes1[3,0].set_xlabel(r"SZA, $\chi(^o)$", fontdict=font)
axes1[3,1].set_xlabel(r"LT, Hours", fontdict=font)
axes1[3,2].set_xlabel(r"MLT, Hours", fontdict=font)
from scipy import stats
print(stats.ttest_rel(edist["mb"], edist["sn"]))
fig1.savefig("_images_/stats.png", bbox_inches="tight")
else:
xref = pd.read_csv("config/flares.csv", parse_dates=["dn", "start", "end"])
for i, row in x.iterrows():
ref = xref[xref.dn==row["dn"]]
stn = row["rio"]
f = "data/sim/archive/{dn}/flare.{rio}.nc.gz".format(dn=row["dn"].strftime("%Y.%m.%d.%H.%M"), rio=stn)
os.system("gzip -d " + f)
_x_ = Dataset(f.replace(".gz", ""))
os.system("gzip " + f.replace(".gz", ""))
times = num2date(_x_.variables["time"][:], _x_.variables["time"].units, _x_.variables["time"].calendar,
only_use_cftime_datetimes=False)
times = np.array([x._to_real_datetime() for x in times]).astype("datetime64[ns]")
times = [dt.datetime.utcfromtimestamp(x.astype(int) * 1e-9) for x in times]
alts = _x_.variables["alts"][:]
o = {
"sn": utils.int_absorption(_x_.variables["abs.ah.sn.o"][:], alts, extpoint=68),
"cc": utils.int_absorption(_x_.variables["abs.ah.av.cc.o"][:], alts, extpoint=64),
"mb": utils.int_absorption(_x_.variables["abs.ah.av.mb.o"][:], alts, extpoint=64),
"me": utils.int_absorption(_x_.variables["abs.sw.ft.o"][:], alts, extpoint=64),
"dr": _x_.variables["drap"][:],
}
pf = utils.Performance(stn=stn, ev=row["dn"], times=times, model=o, start=ref["start"].tolist()[0],
end=ref["end"].tolist()[0], bar=row["bar"], alt=row["alt"])
fname = f.replace("flare","skills")
pf._skill_()._params_()._to_netcdf_(fname.replace(".gz",""))
return
if __name__ == "__main__":
parser = argparse.ArgumentParser()
parser.add_argument("-p", "--prog", default="flare", help="Program code [bgc/flare] (default bgc)")
parser.add_argument("-r", "--rio", default="ott", help="Riometer code (default ott)")
parser.add_argument("-ev", "--event", default=dt.datetime(2015,3,11,16,22), help="Start date (default 2015-3-11T16:22)",
type=dparser.isoparse)
parser.add_argument("-s", "--start", default=dt.datetime(2015,3,11,16), help="Start date (default 2015-3-11T15:30)",
type=dparser.isoparse)
parser.add_argument("-e", "--end", default=dt.datetime(2015,3,11,17), help="End date (default 2015-3-11T17:30)",
type=dparser.isoparse)
parser.add_argument("-g", "--save_goes", action="store_false", help="Save goes data (default True)")
parser.add_argument("-sat", "--sat", type=int, default=15, help="Satellite number (default 15)")
parser.add_argument("-rm", "--save_riom", action="store_false", help="Save riometer data (default True)")
parser.add_argument("-ps", "--plot_summary", action="store_true", help="Plot summary report (default False)")
parser.add_argument("-sr", "--save_result", action="store_false", help="Save results (default True)")
parser.add_argument("-c", "--clear", action="store_true", help="Clear pervious stored files (default False)")
parser.add_argument("-irr", "--irradiance", default="EUVAC+", help="Irradiance model (default EUVAC+)")
parser.add_argument("-v", "--verbose", action="store_true", help="Increase output verbosity (default False)")
parser.add_argument("-pc", "--plot_code", type=int, default=0, help="Plotting code,applicable if --prog==plot (default 0)")
parser.add_argument("-fr", "--frequency", type=float, default=30, help="Frequency of oprrations in MHz (default 30 MHz)")
parser.add_argument("-ex", "--exp", type=int, default=0, help="Program code [0-10] (default0)")
args = parser.parse_args()
if args.verbose:
print("\n Parameter list for simulation ")
for k in vars(args).keys():
print(" " , k , "->" , str(vars(args)[k]))
if args.exp == 0: _case0_(args)
if args.exp == 1: _case1_(args)
if args.exp == 2: _case2_(args)
if args.exp == 3: _stats_(args)
else: print("\n Program not implemented")
print("")
if os.path.exists("models/__pycache__"): os.system("rm -rf models/__pycache__")
if os.path.exists("models/experiments/__pycache__"): os.system("rm -rf models/experiments/__pycache__")
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config.py | HarryThuku/Group-of-Schools | 0 | 1609165 | <filename>config.py
import os, subprocess
appData = {
'institution_name' : os.environ.get("INSTITUTION_NAME"),
'institution_initials':os.environ.get("INSTITUTION_INITIALS"),
'app_base_url' : os.environ.get("APP_URL"),
'map_coordinates' : '',
'country' : os.environ.get("COUNTRY"),
'email' : os.environ.get("MAIL_USERNAME"),
'primary_phone' : os.environ.get("PRIMARY_PHONE"),
'secondary_phone' : '',
'stateOrCounty' : os.environ.get("STATE_OR_COUNTY"),
'about' : ''
}
class Config:
'''
General configuration parent class
'''
SECRET_KEY = os.environ.get('SECRET_KEY')
SQLALCHEMY_DATABASE_URI = os.environ.get("SQLALCHEMY_DATABASE_URI")
UPLOADED_PHOTOS_DEST = 'app/static/photos'
# email configurations
MAIL_SERVER = 'smtp.gmail.com'
MAIL_PORT = 587
MAIL_USE_TLS = True
MAIL_USE_SSL = False
MAIL_USERNAME = os.environ.get('MAIL_USERNAME')
MAIL_PASSWORD = <PASSWORD>('MAIL_PASSWORD')
MAIL_DEFAULT_SENDER = os.environ.get('MAIL_DEFAULT_SENDER')
MAIL_MAX_EMAILS = os.environ.get('')
MAIL_SUPPRESS_SEND = os.environ.get('')
MAIL_ASCII_ATTACHMENTS = os.environ.get('')
SUBJECT_PREFIX = appData['institution_name']
SQLALCHEMY_TRACK_MODIFICATIONS = True
# simplemde confirgurations
# simplemde configurations
SIMPLEMDE_JS_IIFE = True
SIMPLEMDE_USE_CDN = True
class ProdConfig(Config):
'''
Production configuration child class
Args:
Config: The parent configuration class with General configuration settings
'''
# SQLALCHEMY_DATABASE_URI = os.environ.get("DATABASE_URL")
SQLALCHEMY_DATABASE_URI = os.environ.get('DATABASE_URI')
APP_URL = os.environ.get('APP_URL')
TESTING = False
MAIL_SUPPRESS_SEND = False
MAIL_DEBUG = False
DEBUG = False
class TestConfig(Config):
SQLALCHEMY_DATABASE_URI = 'postgresql+psycopg2://harryking:bigboy999@localhost/school_sys_test'
class DevConfig(Config):
'''
Development configuration child class
Args:
Config : the parent configuration class with General configuration settings
'''
SQLALCHEMY_DATABASE_URI = f'postgresql+psycopg2://harryking:bigboy999@localhost/school_system'
MAIL_SUPPRESS_SEND = True
MAIL_DEBUG = True
TESTING = True
DEBUG = True
config_options = {
'development' : DevConfig,
'production' : ProdConfig,
'test' : TestConfig
} | [
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chatbot/__init__.py | chengdrabin325/karina_botproject | 1 | 65099 | import re,random,requests,json
from os import path
from .DefaultSubs import *
from .spellcheck import correction,WORDS
try:
from urllib import quote
except ImportError as e:
from urllib.parse import quote
reflections = {
"i am" : "you are",
"i was" : "you were",
"i" : "you",
"i'm" : "you are",
"i'd" : "you would",
"i've" : "you have",
"i'll" : "you will",
"my" : "your",
"you are" : "I am",
"you were" : "I was",
"you've" : "I have",
"you'll" : "I will",
"your" : "my",
"yours" : "mine",
"you" : "me",
"me" : "you"
}
class multiFunctionCall:
def __init__(self,func={}):
self.__func__ = func
def defaultfunc(self,string,sessionID ="general"):
return string
def call(self,string,sessionID):
s = string.split(":")
if len(s)<=1:
return string
name = s[0].strip()
s = ":".join(s[1:])
func = self.defaultfunc
try:func = self.__func__[name]
except:s = string
return re.sub(r'\\([\[\]{}%:])',r"\1",func(re.sub(r'([\[\]{}%:])',r"\\\1",s),sessionID =sessionID))
class dummyMatch:
def __init__(self,string):
self.string = string
def group(self,index):
if index==0:return self.string
raise IndexError("no such group")
def groupdict(self,*arg,**karg):
return {}
class Topic:
def __init__(self,topics):
self.topic={"general":''}
self.topics = topics
def __setitem__(self,key,value):
value = value.strip()
if value and value[0]==".":
index=1
current_topic = self.topic[key].split(".")
while value[index]==".":
index+=1
current_topic.pop()
current_topic.append(value[index:])
value = ".".join(current_topic)
self.topic[key]=value
def __getitem__(self,key):
topic = self.topic[key]
if topic in self.topics():
return topic
return ''
class Chat(object):
def __init__(self, pairs=(), reflections=reflections, call=multiFunctionCall(), api={}, normalizer=defaultNormal,default_template=path.join(path.dirname(path.abspath(__file__)),"default.template")):
"""
Initialize the chatbot. Pairs is a list of patterns and responses. Each
pattern is a regular expression matching the user's statement or question,
e.g. r'I like (.*)'. For each such pattern a list of possible responses
is given, e.g. ['Why do you like %1', 'Did you ever dislike %1']. Material
which is matched by parenthesized sections of the patterns (e.g. .*) is mapped to
the numbered positions in the responses, e.g. %1.
:type pairs: list of tuple
:param pairs: The patterns and responses
:type reflections: dict
:param reflections: A mapping between first and second person expressions
:rtype: None
"""
self.__init__handler()
defaultpairs = self.__processTemplateFile(default_template)
if type(pairs).__name__ in ('unicode','str'):
pairs = self.__processTemplateFile(pairs)
self._pairs = {'':{"pairs":[],"defaults":[]}}
if type(pairs)!=dict:
pairs = {'':{"pairs":pairs,"defaults":[]}}
elif not '' in pairs:
raise KeyError("Default topic missing")
self._normalizer = dict(normalizer)
for key in normalizer:
self._normalizer[key.lower()] = normalizer[key]
self._normalizer_regex = self._compile_reflections(normalizer)
self.__processLearn(defaultpairs)
self.__processLearn(pairs)
self._reflections = reflections
self._regex = self._compile_reflections(reflections)
self._memory = {"general":{}}
self.conversation = {"general":[]}
self.sessionID = "general"
self.attr = {"general":{"match":None,"pmatch":None,"_quote":False,"substitute":True}}
self.call = call
self.topic = Topic(self._pairs.keys)
try:self._api = api if type(api)==dict else json.load(api)
except:raise SyntaxError("Invalid value for api")
def __init__handler(self):
"""
initialize handlers and operator functionality
"""
self.__action_handlers = {"chat":self.__chat_handler,
"low":self.__low_handler,
"up":self.__up_handler,
"cap":self.__cap_handler,
"call":self.__call_handler,
"topic":self.__topic_handler,
"map":self.__map_handler,
"eval":self.__eval_handler,
}
self.__confitional_operator = {
"!=":lambda a,b:a!=b,
">=":lambda a,b:a>=b,
"<=":lambda a,b:a<=b,
"==":lambda a,b:a==b,
"<":lambda a,b:a<b,
">":lambda a,b:a>b
}
self.__logical_operator ={
'&':lambda a,b:a and b,
'|':lambda a,b:a or b,
'^':lambda a,b:a ^ b
}
def __normalize(self,text):
"""
Substitute words in the string, according to the specified Normal,
e.g. "I'm" -> "I am"
:type str: str
:param str: The string to be mapped
:rtype: str
"""
return self._normalizer_regex.sub(lambda mo:
self._normalizer[mo.string[mo.start():mo.end()]],
text.lower())
def __errorMessage(self,expected,found):
return "Expected '%s' tag found '%s'" % (expected,found)
def __responseTags(self,text,pos,index):
next_index=index+1
if pos[next_index][2]!="endresponse":
raise SyntaxError(self.__errorMessage("endresponse",pos[next_index][2]))
return text[pos[index][1]:pos[next_index][0]].strip(" \t\n")
def __blockTags(self,text,pos,length,index):
withinblock = {"learn":{},"response":[],"client":[],"prev":[]}
while pos[index][2]!="endblock":
if pos[index][2]=="learn":
withinblock["learn"]={}
index = self.__GroupTags(text,pos,withinblock["learn"],(lambda i:pos[i][2]!="endlearn"),length,index+1)
index-=1
elif pos[index][2]=="response":
withinblock["response"].append(self.__responseTags(text,pos,index))
index+=1
elif pos[index][2]=="client":
index+=1
if pos[index][2]!="endclient":
raise SyntaxError(self.__errorMessage("endclient",pos[index][2]))
withinblock["client"].append(text[pos[index-1][1]:pos[index][0]].strip(" \t\n"))
elif pos[index][2]=="prev":
index+=1
if pos[index][2]!="endprev":
raise SyntaxError(self.__errorMessage("endprev",pos[index][2]))
withinblock["prev"].append(text[pos[index-1][1]:pos[index][0]].strip(" \t\n"))
else:
raise NameError("Invalid Tag '%s'" % pos[index][2])
index+=1
return index+1,(withinblock["client"][0],
withinblock["prev"][0] if withinblock["prev"] else None,
withinblock["response"],
withinblock["learn"] )
def __GroupTags(self,text,pos,groups,condition,length,index=0,name=""):
pairs=[]
defaults=[]
while condition(index):
if pos[index][2]=="block":
p,within = self.__blockTags(text,pos,length,index+1)
pairs.append(within)
index=p
elif pos[index][2]=="response":
defaults.append(self.__responseTags(text,pos,index))
index+=2
elif pos[index][2]=="group":
child_name=(name+"."+pos[index][3].strip()) if name else pos[index][3].strip()
index = self.__GroupTags(text,pos,groups,(lambda i:pos[i][2]!="endgroup"),length,index+1, name=child_name)
else:
raise SyntaxError(self.__errorMessage('group, block, or response',pos[index][2]))
if name in groups:
groups[name]["pairs"].extend(pairs)
groups[name]["defaults"].extend(defaults)
else:
groups[name]={"pairs":pairs,"defaults":defaults}
return index+1
def __processTemplateFile(self,fileName):
with open(fileName, encoding='utf-8') as template:
text = template.read()
pos = [(m.start(0),m.end(0),text[m.start(1):m.end(1)],text[m.start(4):m.end(4)]) \
for m in re.finditer(
r'{%[\s\t]+((end)?(block|learn|response|client|prev|group))[\s\t]+([^%]*|%(?=[^}]))%}',
text)
]
length = len(pos)
groups = {}
self.__GroupTags(text,pos,groups,(lambda i:i<length),length)
return groups
def __build_pattern(self,pattern):
if pattern!=None:
try:return re.compile(self.__normalize(pattern), re.IGNORECASE)
except Exception as e:
e.args=(str(e)+ " in pattern "+pattern, )
raise e
def __processLearn(self,pairs):
for topic in pairs:
if topic not in self._pairs:self._pairs[topic]={"pairs":[],"defaults":[]}
self._pairs[topic]["defaults"].extend([(i,self._condition(i))
for i in pairs[topic].get("defaults",[])])
for pair in pairs[topic]["pairs"][::-1]:
learn, previous = {}, None
length = len(pair)
if length>3:client,previous,responses,learn = pair[:4]
elif length==3:
if type(pair[1]) in (tuple,list):client,responses,learn = pair
else:client,previous,responses = pair
elif length==2 and type(pair[1]) in (tuple,list):client,responses = pair
else:raise ValueError("Response not specified")
if type(learn) != dict:
raise TypeError("Invalid Type for learn expected dict got '%s'" % type(l).__name__)
self._pairs[topic]["pairs"].insert(0,(self.__build_pattern(client),
self.__build_pattern(previous),
tuple((i,self._condition(i)) for i in responses),
learn))
def _startNewSession(self,sessionID,topic=''):
self._memory[sessionID]={}
self.conversation[sessionID]=[]
self.attr[sessionID]={"match":None,"pmatch":None,"_quote":False,"substitute":True}
self.topic[sessionID] = topic
def _restructure(self,group,index=None):
if index==None:
toremove={}
allElem = list(group)
for i in group:
toremove[i]=set()
for j in group[i]:
toremove[i].update(set(group[i]).intersection(group[j]))
for i in group:
for j in toremove[i]:
group[i].remove(j)
try: allElem.remove(j)
except: pass
index = list(group)
toremove = [j for i in list(allElem) for j in group[i]]
for i in toremove:
try: allElem.remove(i)
except: pass
else:
allElem = list(index)
while index:
i = index.pop()
if type(group[i])==list:
group[i] = self._restructure(dict(group),group[i])
for j in list(group[i]):
try: index.remove(j)
except: pass
return {i:group[i] for i in allElem}
def _subAction(self,group,start_end_pair,action):
return {i:{
"action":action[i],
"start":start_end_pair[i][0],
"end":start_end_pair[i][1],
"child":self._subAction(group[i],start_end_pair,action)
} for i in group}
def _getWithin(self,group,index):
def init_group(i):
group[index[i]]["within"]=[]
orderedGroup.append(group[index[i]])
return i+1
def append_group(pos,i):
pos,within = self._getWithin(group,index[pos:])
group[index[i-1]]["within"]+=within
return pos
i = 0
orderedGroup = []
while i<len(index):
if group[index[i]]["action"]=="if":
i=init_group(i)
startIF = True
while startIF:
if i>=len(index):
raise SyntaxError("If not closed in Conditional statement")
if group[index[i]]["action"]=="elif": i = init_group(i)
elif group[index[i]]["action"]=="else":
pos = i = init_group(i)
startIF = False
while group[index[pos]]["action"]!="endif": pos = append_group(pos,i)+i
i = init_group(pos)
elif group[index[i]]["action"]=="endif":
i = init_group(i)
startIF = False
else:
pos = append_group(i,i)
for j in range(i,pos): del group[index[j]]
i += pos
elif group[index[i]]["action"] in self.__action_handlers .keys():
orderedGroup.append(group[index[i]])
i += 1
else:return i,orderedGroup
return i,orderedGroup
def _setwithin(self,group):
old =group
for i in group:
if group[i]["child"]:
group[i]["child"] = self._setwithin(group[i]["child"])
index = list(group)
index.sort(key =lambda x: group[x]["start"])
pos,orderedGroup = self._getWithin(group,index)
if pos<len(index):
raise SyntaxError("invalid statement")
return orderedGroup
def _inherit(self,start_end_pair,action):
group = {}
for i in range(len(start_end_pair)):
group[i] = []
for j in range(len(start_end_pair)):
if start_end_pair[i][0]<start_end_pair[j][0] and start_end_pair[i][1]>start_end_pair[j][1]:
group[i].append(j)
group = self._restructure(group)
group = self._subAction(group,start_end_pair,action)
return self._setwithin(group)
def _condition(self,response):
pos = [(m.start(0),m.end(0)) for m in re.finditer(r'{%?|%?}|\[|\]', response)]
newPos = [(start,end) for start,end in pos if (not start) or response[start-1]!="\\" ]
i=0
start_end_pair = []
actions = []
while newPos:
for i in range(1,len(newPos)):
if response[newPos[i][1]-1] in "}]":
break
if response[newPos[i-1][0]] in "{[":
endTag = newPos.pop(i)
biginTag = newPos.pop(i-1)
bN = biginTag[1]-biginTag[0]
eN = endTag[1]-endTag[0]
if bN != eN or not ((response[biginTag[0]] == "{" and response[endTag[1]-1] == "}") or (response[biginTag[0]] == "[" and response[endTag[1]-1] == "]")):
raise SyntaxError("invalid syntax '%s'" % response)
start_end_pair.append((biginTag[1],endTag[0]))
if bN == 2:
statement = re.findall( r'^[\s\t]*(if|endif|elif|else|chat|low|up|cap|call|topic)[\s\t]+',
response[biginTag[1]:endTag[0]])
if statement:
actions.append(statement[0])
else:
raise SyntaxError("invalid statement '%s'" % response[biginTag[1]:endTag[0]] )
else:
if response[biginTag[0]] == "{":
actions.append("map")
else:
actions.append("eval")
else:
raise SyntaxError("invalid syntax in \"%s\"" % response)
try:
group = self._inherit(start_end_pair,actions)
except SyntaxError:
raise SyntaxError("invalid statement in \"%s\"" % response)
return group
def _compile_reflections(self,normal):
sorted_refl = sorted(normal.keys(), key=len, reverse=True)
return re.compile(r"\b({0})\b".format("|".join(map(re.escape,
sorted_refl))), re.IGNORECASE)
def _substitute(self, str):
"""
Substitute words in the string, according to the specified reflections,
e.g. "I'm" -> "you are"
:type str: str
:param str: The string to be mapped
:rtype: str
"""
if not self.attr.get("substitute",True):return str
return self._regex.sub(lambda mo:
self._reflections[mo.string[mo.start():mo.end()]],
str.lower())
def _checkIF(self,con,sessionID = "general"):
pos = [(m.start(0),m.end(0),m.group(0)) for m in re.finditer(r'([\<\>!=]=|[\<\>]|&|\|)', con)]
if not pos:return con.strip()
res = prevres = True
prevO = None
pcsymbol = "&"
A = con[0:pos[0][0]].strip()
for j in range(len(pos)):
s,e,o = pos[j]
try:B = con[e:pos[j+1][0]].strip()
except:B = con[e:].strip()
try:a,b = float(A),float(b)
except:a,b = A,B
try:res = self.__confitional_operator[o](a,b) and res
except:
try:prevres,res = self.__logical_operator[pcsymbol](prevres,res),True
except:SyntaxError("invalid conditional operator \"%s\"" % pcsymbol)
pcsymbol = o
A = B
return self.__logical_operator[pcsymbol](prevres,res)
def __if_handler(self,i,condition,response,sessionID):
start = self.__get_start_pos(condition[i]["start"],response,"if")
end = condition[i]["end"]
check = True
matchedIndex = None
_quote = self.attr[sessionID]["_quote"]
self.attr[sessionID]["_quote"] = False
substitute = self.attr.get("substitute",True)
self.attr["substitute"] = False
while check:
con = self._checkAndEvaluateCondition(response,condition[i]["child"],start,end,sessionID =sessionID)
i+=1
if self._checkIF(con,sessionID =sessionID):
matchedIndex = i-1
while condition[i]["action"] != "endif":
i+=1
check = False
elif condition[i]["action"] == "else":
matchedIndex = i
while condition[i]["action"] != "endif":
i+=1
check = False
elif condition[i]["action"] == "elif":
start = self.__get_start_pos(condition[i]["start"],response,"elif")
end = condition[i]["end"]
elif condition[i]["action"] == "endif":
check = False
self.attr[sessionID]["_quote"] = _quote
self.attr["substitute"] = substitute
return ((self._checkAndEvaluateCondition(
response,
condition[matchedIndex]["within"],
condition[matchedIndex]["end"]+2,
condition[matchedIndex+1]["start"]-2,
sessionID =sessionID
) if matchedIndex!=None else ""),i)
def __handler(self,condition,response,action,sessionID):
return self._checkAndEvaluateCondition(
response,
condition["child"],
self.__get_start_pos(condition["start"],response,action),
condition["end"],
sessionID =sessionID
)
def __chat_handler(self,i,condition,response,sessionID):
substitute = self.attr.get("substitute",True)
self.attr["substitute"] = False
response = self.respond(self.__handler(condition[i],response,"chat",sessionID),sessionID =sessionID)
self.attr["substitute"] = substitute
return response
def __low_handler(self,i,condition,response,sessionID):
return self.__handler(condition[i],response,"low",sessionID).lower()
def __up_handler(self,i,condition,response,sessionID):
return self.__handler(condition[i],response,"up",sessionID).upper()
def __cap_handler(self,i,condition,response,sessionID):
return self.__handler(condition[i],response,"cap",sessionID).capitalize()
def __call_handler(self,i,condition,response,sessionID):
return self.call.call(self.__handler(condition[i],response,"call",sessionID),sessionID =sessionID)
def __topic_handler(self,i,condition,response,sessionID):
self.topic[sessionID] = self.__handler(condition[i],response,"topic",sessionID).strip()
return ""
def __get_start_pos(self,start,response,exp):
return start+re.compile(r"([\s\t]*"+exp+"[\s\t]+)").search(response[start:]).end(1)
def __map_handler(self,i,condition,response,sessionID):
start = condition[i]["start"]
end = condition[i]["end"]
think = False
if response[start] == "!":
think = True
start +=1
content = self._checkAndEvaluateCondition(
response,
condition[i]["child"],
start,
end,
sessionID =sessionID
).strip().split(":")
name = content[0]
thisIndex=0
for thisIndex in range(1,len(content)):
if name[-1]=="\\":
name += ":"+content[thisIndex]
else:
thisIndex-=1
break
thisIndex+=1
name = name.strip().lower()
if thisIndex<(len(content)):
value = content[thisIndex]
for thisIndex in range(thisIndex+1,len(content)):
if value[-1]=="\\":
value += ":"+content[thisIndex]
else:
break
self._memory[sessionID][name] = self._substitute(value.strip())
return self._memory[sessionID][name] if not think and name in self._memory[sessionID] else ""
def __eval_handler(self,i,condition,restopnse,sessionID):
start = condition[i]["start"]
end = condition[i]["end"]
think = False
if response[start] == "!":
think = True
start +=1
_quote = self.attr[sessionID]["_quote"]
self.attr[sessionID]["_quote"] = True
content = self._checkAndEvaluateCondition(
response,
condition[i]["child"],
start,
end,
sessionID =sessionID
).strip()
self.attr[sessionID]["_quote"] = _quote
vals = content.split(",")
names = vals[0].split(":")
apiName = names[0]
methodName = ":".join(names[1:])
data={}
key=None
for i in vals[1:]:
pair = vals[i].split(":")
if len(pair)>=2:
key = pair[0]
data[key]=":".join(pair[1:])
elif key!=None:
data[key]+=","+pair[0]
else:raise SyntaxError("invalid syntax '%s'" % response[start:end] )
result = self.__api_handler(apiName,methodName,data)
return "" if think else result
def __api_request(self,url,method,**karg):
try:return requests.__dict__[method.lower().strip()](url,**karg)
except requests.exceptions.MissingSchema as e:
return self.__api_request("http://"+url,method,**karg)
except requests.exceptions.ConnectionError as e:
raise RuntimeError("Couldn't connect to server (unreachable). Check your network")
except KeyError as e:
raise RuntimeError("Invalid method name '%s' in api.json" % method)
def __api_handler(self,apiName,methodName,data={}):
if apiName not in self._api or methodName not in self._api[apiName]:
raise RuntimeError("Invalid method name '%s' for api '%s' ",(methodName,apiName))
api_params = dict(self._api[apiName][methodName])
if "auth" in self._api[apiName]:
try:api_params["cookies"] = self.__api_request(**self._api[apiName]["auth"]).cookies
except:raise ValueError("In api.json 'auth' of '%s' is wrongly configured." % apiName)
param = "params" if self._api[apiName][methodName]["method"].upper().strip() == "GET" else "data"
try:api_params[param].update(data)
except:api_params[param] = data
api_type = "normal"
if "type" in api_params:
api_type = api_params["type"]
del api_params["type"]
api_data_getter = []
if "value_getter" in api_params:
api_data_getter = api_params["value_getter"]
del api_params["value_getter"]
response = self.__api_request(**api_params)
responseText = response.json() if api_type.upper().strip()=="JSON" else response.content
for key in api_data_getter:
responseText = responseText[key]
return responseText
def _quote(self,string,sessionID):
if self.attr[sessionID]["_quote"]:
try:return urllib2.quote(string)
except:return urllib2.quote(string.encode("UTF-8"))
return string
def __substituteFromClientStatement(self,match,prevResponse,extraSymbol="",sessionID = "general"):
"""
Substitute from Client statement into respose
"""
prev = 0
startPadding = 1+len(extraSymbol)
finalResponse = ""
for m in re.finditer(r'%'+extraSymbol+'[0-9]+', prevResponse):
start = m.start(0)
end = m.end(0)
num = int(prevResponse[start+startPadding:end])
finalResponse += prevResponse[prev:start]
try:finalResponse += self._quote(self._substitute(match.group(num)),sessionID)
except IndexError as e:pass
prev = end
namedGroup = match.groupdict()
if namedGroup:
prevResponse = finalResponse + prevResponse[prev:]
finalResponse = ""
prev = 0
for m in re.finditer(r'%'+extraSymbol+'([a-zA-Z_][a-zA-Z_0-9]*)([^a-zA-Z_0-9]|$)', prevResponse):
start = m.start(1)
end = m.end(1)
finalResponse += prevResponse[prev:start]
try:
value = namedGroup[prevResponse[start+startPadding:end]]
if value:finalResponse += self._quote(self._substitute(value),sessionID)
except KeyError as e:pass
prev = end
return finalResponse + prevResponse[prev:]
def _checkAndEvaluateCondition(self, response,condition=[],startIndex=0,endIndex=None,sessionID = "general"):
endIndex = endIndex if endIndex != None else len(response)
if not condition:
finalResponse = self.__substituteFromClientStatement(self.attr[sessionID]["match"],response[startIndex:endIndex],sessionID = sessionID)
parentMatch=self.attr[sessionID]["pmatch"]
return self.__substituteFromClientStatement(parentMatch,finalResponse,extraSymbol = '!',sessionID = sessionID) if parentMatch!=None else finalResponse
i=0
finalResponse = ""
while i < len(condition):
pos = condition[i]["start"]-(1 if condition[i]["action"] in ["map","eval"] else 2)
finalResponse += self._checkAndEvaluateCondition(response[startIndex:pos],sessionID =sessionID)
_quote = self.attr[sessionID]["_quote"]
try:
self.attr[sessionID]["_quote"] = False
tempResponse = self.__action_handlers[condition[i]["action"]](i,condition,response,sessionID)
self.attr[sessionID]["_quote"] = _quote
finalResponse += self._quote(tempResponse,sessionID)
except KeyError as e:
if condition[i]["action"] == "if":
self.attr[sessionID]["_quote"] = _quote
response_txt,i = self.__if_handler(i,condition,response,sessionID)
finalResponse += response_txt
startIndex = condition[i]["end"]+(1 if condition[i]["action"] in ["map","eval"] else 2)
i+=1
self.attr[sessionID]["_quote"] = _quote
finalResponse += self._checkAndEvaluateCondition(response[startIndex:endIndex],sessionID = sessionID)
return finalResponse
def _wildcards(self, response, match, parentMatch,sessionID = "general"):
self.attr[sessionID]["match"]=match
self.attr[sessionID]["pmatch"]=parentMatch
response,condition = response
return re.sub(r'\\([\[\]{}%:])',r"\1",self._checkAndEvaluateCondition(response,condition,sessionID = sessionID ))
def __chose_and_process(self,choices,match,parentMatch,sessionID):
resp = random.choice(choices) # pick a random response
resp = self._wildcards(resp, match, parentMatch,sessionID = sessionID) # process wildcards
# fix munged punctuation at the end
if resp[-2:] == '?.': resp = resp[:-2] + '.'
if resp[-2:] == '??': resp = resp[:-2] + '?'
return resp
def __intend_selection(self, text, previousText, current_topic, sessionID):
for (pattern, parent, response,learn) in self._pairs[current_topic]["pairs"]:# check each pattern
match = pattern.match(text)
if not match:continue
if parent==None:return match,None,response,learn
parentMatch = parent.match(previousText)
if parentMatch:# did the pattern match?
return match,parentMatch,response,learn
def __response_on_topic(self, text, previousText, text_correction, current_topic, sessionID = "general"):
match=self.__intend_selection(text, previousText, current_topic, sessionID) or \
self.__intend_selection(text_correction, previousText, current_topic, sessionID)
if match:
match,parentMatch,response,learn=match
if learn:
self.__processLearn({
self._wildcards((topic,self._condition(topic)), match, parentMatch,sessionID = sessionID): \
{'pairs':[self.__substituteInLearn(pair, match, parentMatch,sessionID = sessionID) for pair in learn[topic]['pairs']],
'defaults':[self._wildcards((default,self._condition(default)), match, parentMatch,sessionID = sessionID) for default in learn[topic]['defaults']] } \
for topic in learn})
return self.__chose_and_process(response,match,parentMatch,sessionID)
if self._pairs[current_topic]["defaults"]:
return self.__chose_and_process(self._pairs[current_topic]["defaults"],dummyMatch(text), None,sessionID)
raise ValueError("No match found")
def __correction(self,text):
"""
spell correction
"""
new_text = []
for i in text.split():
if len(i)>3:
low = i.lower()
new_text.append(i if WORDS[i] else correction(i))
else:new_text.append(i)
return " ".join(new_text)
def respond(self, text, sessionID = "general"):
"""
Generate a response to the user input.
:type text: str
:param text: The string to be mapped
:rtype: str
"""
text = self.__normalize(text)
previousText = self.__normalize(self.conversation[sessionID][-2])
text_correction = self.__correction(text)
current_topic = self.topic[sessionID]
current_topic_order = current_topic.split(".")
while current_topic_order:
try:return self.__response_on_topic(text, previousText, text_correction, current_topic, sessionID)
except ValueError as e:pass
current_topic_order.pop()
current_topic = ".".join(current_topic_order)
try:return self.__response_on_topic(text, previousText, text_correction, current_topic, sessionID)
except ValueError as e:return "Sorry I couldn't find anything relevant"
def __substituteInLearn(self,pair, match, parentMatch,sessionID = "general"):
return tuple((self.__substituteInLearn(i, match, parentMatch,sessionID = sessionID) if type(i) in (tuple,list) else \
(i if type(i) == dict else (self._wildcards((i,self._condition(i)), match, parentMatch,sessionID = sessionID) if i else i))) for i in pair)
def __get_topic_recursion(self,topics):
result={}
for topic in topics:
topic_depth=result
for sub_topic in topic.split("."):
topic_depth=topic_depth.setdefault(sub_topic,{})
try:
del result['']
result={'':result}
except:pass
return result
def save_template(self,filename):
with open(filename,"w") as template:
for topic_name,sub_topic in self.__get_topic_recursion(self._pairs).items():
self.__genrate_and_write_template(template,self._pairs,topic_name,sub_topic)
def __genrate_and_write_template(self,template,pairs,topic,sub_topics,base_path=None):
full_path=(base_path+"."+topic) if base else topic
if topic:template.write("{% group "+topic+" %}")
for topic_name,sub_topic in sub_topics.items():self.__genrate_and_write_template(template,pairs,topic_name,sub_topic,full_path)
for (pattern, parent, response,learn) in pairs[full_path]["pairs"]:
template.write("{% block %}")
template.write("{% client %}"+pattern.pattern+"{% endclient %}")
if parent!=None:
template.write("{% prev %}"+parent.pattern+"{% endprev %}")
for res in response:
template.write("{% response %}"+res[0]+"{% response %}")
if learn:
template.write("{% learn %}")
for topic_name,sub_topic in self.__get_topic_recursion(learn).items():self.__genrate_and_write_template(template,learn,topic_name,sub_topic)
template.write("{% endlearn %}")
template.write("{% endblock %}")
for res in pairs[topic]["defaults"]:
template.write("{% response %}"+res[0]+"{% response %}")
if topic:template.write("{% endgroup %}")
# Hold a conversation with a chatbot
def converse(self,firstQuestion=None ,quit="quit",sessionID = "general"):
if firstQuestion!= None:
self.conversation[sessionID].append(firstQuestion)
print (firstQuestion)
try:input_reader = raw_input
except NameError:input_reader = input
input_sentence = ""
while input_sentence != quit:
input_sentence = quit
try: input_sentence = input_reader("> ")
except EOFError:print (input_sentence)
if input_sentence:
self.conversation[sessionID].append(input_sentence)
while input_sentence[-1] in "!.": input_sentence = input_sentence[:-1]
self.conversation[sessionID].append(self.respond(input_sentence,sessionID=sessionID))
print (self.conversation[sessionID][-1])
def demo():
firstQuestion="Hi, how are you?"
Chat().converse(firstQuestion)
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steampak/webapi/resources/user.py | idlesign/steampak | 24 | 94688 | <filename>steampak/webapi/resources/user.py
from ..settings import URL_COMMUNITY_BASE, APPID_STEAM
from ..utils import str_sub, DataFetcher
from ..exceptions import ResponseError
from .market import Item, Card, TAG_ITEM_CLASS_CARD
URL_USER_BASE = URL_COMMUNITY_BASE + '/id/$username'
URL_USER_INVENTORY_PUBLIC_BASE = URL_USER_BASE + '/inventory/json/'
URL_USER_INVENTORY_PUBLIC_APP = URL_USER_INVENTORY_PUBLIC_BASE + '$appid/6'
URL_USER_INVENTORY_PUBLIC_STEAM = str_sub(URL_USER_INVENTORY_PUBLIC_APP, appid=APPID_STEAM)
URL_USER_GAMES_OWNED = URL_USER_BASE + '/games/?xml=1'
INV_CLASSID_GEM = '667924416'
class User(object):
def __init__(self, username):
self.username = username
self._intentory_raw = None
def _get_inventory_raw(self):
url = str_sub(URL_USER_INVENTORY_PUBLIC_STEAM, username=self.username)
response = DataFetcher(url).fetch_json()
if not response:
raise ResponseError('No response', url)
if not response['success']:
raise ResponseError(response['Error'], url)
self._intentory_raw = response
return response
def traverse_inventory(self, item_filter=None):
"""Generates market Item objects for each inventory item.
:param str item_filter: See `TAG_ITEM_CLASS_` contants from .market module.
"""
not self._intentory_raw and self._get_inventory_raw()
for item in self._intentory_raw['rgDescriptions'].values():
tags = item['tags']
for tag in tags:
internal_name = tag['internal_name']
if item_filter is None or internal_name == item_filter:
item_type = Item
if internal_name == TAG_ITEM_CLASS_CARD:
item_type = Card
appid = item['market_fee_app']
title = item['name']
yield item_type(appid, title)
@property
def gems_total(self):
not self._intentory_raw and self._get_inventory_raw()
items = self._intentory_raw['rgInventory']
return sum([int(item['amount']) for item in items.values() if item['classid'] == INV_CLASSID_GEM])
def get_games_owned(self):
url = str_sub(URL_USER_GAMES_OWNED, username=self.username)
xml = DataFetcher(url).fetch_xml()
games = {}
for el in xml:
if el.tag == 'games':
for game in el:
props = {}
for prop in game:
if prop.tag == 'appID':
props['appid'] = prop.text
elif prop.tag == 'name':
props['title'] = prop.text
games[props['appid']] = props
return games
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plotting/single_trials.py | PFMassiani/vibly | 5 | 28241 | import numpy as np
import matplotlib.pyplot as plt
# colors corresponding to initial flight, stance, second flight
colors = ['k', 'b', 'g']
### The attributes of sol are:
## sol.t : series of time-points at which the solution was calculated
## sol.y : simulation results, size 6 x times
## sol.t_events : list of the times of 7 events:
# - fall during flight
# - touchdown
# - fall during stance
# - lift-off
# - reversal during stance
# - apex during flight
# - fall during flight
### If the event did not occur than the array is empty.
def com_visualisation(sol, leg_visibility=0.5, colors=colors, size=100, Ground=False):
'''
This function plots failure events in red.
'''
times = sol.t
result = sol.y
t_events = sol.t_events
x_com = result[0]
y_com = result[1]
# plt.figure()
### Initial position
plt.scatter(x_com[0], y_com[0], color = colors[0], s = size)
foot_x = result[4,0]
foot_y = result[5,0]
plt.plot([foot_x,x_com[0]],[foot_y,y_com[0]], color = colors[0],
alpha = leg_visibility)
### First flight phase
if len(t_events[1]) == 0: # no touch-down
## Time of failure
if len(t_events[0]) == 0: # no fall during initial flight
print('No touch-down but no fall during flight')
else:
failure = t_events[0][0]
fail_index = np.argmax(times > failure)
plt.plot(x_com[:fail_index],y_com[:fail_index], color = colors[0])
plt.scatter(x_com[fail_index -1],y_com[fail_index-1],
color = 'r', s = size)
else:
touchdown = t_events[1][0]
index = np.argmax(times > touchdown)
foot_x = result[4,index]
plt.plot(x_com[:index],y_com[:index], color = colors[0])
plt.scatter(x_com[index-1],y_com[index-1], color = colors[1], s = size)
plt.plot([foot_x,x_com[index-1]],[0,y_com[index-1]], color = colors[1],
alpha = leg_visibility)
### Stance phase
if len(t_events[3]) == 0: # no lift-off
## Time of failure
failure = False
if len(t_events[2]) == 0: # no fall during initial flight
if len(t_events[4]) == 0: # no reversal during initial flight
print('No lift-off but no failure during stance')
else:
failure = t_events[4][0] # time of reversal
else:
failure = t_events[2][0] # time of fall
if failure:
fail_index = np.argmax(times > failure)
plt.plot(x_com[index:fail_index],y_com[index:fail_index],
color = colors[1])
plt.scatter(x_com[fail_index -1],y_com[fail_index-1],
color = 'r', s = size)
else:
liftoff = t_events[3][0]
lift_index = np.argmax(times > liftoff)
plt.plot(x_com[index-1:lift_index],y_com[index-1:lift_index],
color = colors[1])
plt.scatter(x_com[lift_index-1],y_com[lift_index-1],
color = colors[2], s = size)
plt.plot([foot_x,x_com[lift_index-1]],[0,y_com[lift_index-1]],
color = colors[2], alpha = leg_visibility)
### Flight phase
if len(t_events[5]) == 0: # no apex
## Time of failure
if len(t_events[6]) == 0: # no fall
print('No apex but no fall during flight')
else:
failure = t_events[6][0]
fail_index = np.argmax(times > failure)
plt.plot(x_com[lift_index-1:fail_index],y_com[lift_index-1:fail_index], color = colors[2])
plt.scatter(x_com[fail_index -1],y_com[fail_index-1], color = 'r', s = size)
else:
apex = t_events[5][0]
if times[-1] > apex:
apex_index = np.argmax(times > apex)
else:
apex_index = len(times)
plt.plot(x_com[lift_index-1:apex_index],
y_com[lift_index-1:apex_index], color = colors[2])
plt.scatter(x_com[apex_index-1],y_com[apex_index-1],
color = colors[0], s = size)
plt.plot([result[4,apex_index-1],x_com[apex_index-1]],
[result[5,apex_index-1],y_com[apex_index-1]],
color = colors[0], alpha = leg_visibility)
if Ground:
ground = result[-1]
plt.plot(x_com, ground, color = 'k')
else:
plt.axhline(y=0, color = 'k')
plt.xlabel('Horizontal position')
plt.ylabel('Vertical position')
def full_visualisation(sol, colors = colors, foot = False):
'''
This function only plots if there was no failure in the trial
'''
times = sol.t
result = sol.y
t_events = sol.t_events
labels = ['touchdown','liftoff','apex']
# If the trial was not a failure:
if len(t_events[1]) > 0 and len(t_events[3]) > 0 and len(t_events[5]) > 0:
events = [t_events[1][0],t_events[3][0],t_events[5][0]]
indices = [0]
for e in range(3):
indices.append(np.argmax(times >= events[e]))
if foot:
## Foot trajectory
foot_x = result[4]
foot_y = result[5]
plt.figure()
for e in range(3):
plt.subplot(221)
plt.plot(times[indices[e]:indices[e+1]], foot_x[indices[e]:indices[e+1]], color = colors[e])
plt.subplot(223)
plt.plot(times[indices[e]:indices[e+1]], foot_y[indices[e]:indices[e+1]], color = colors[e])
plt.subplot(122)
plt.plot(foot_x[indices[e]:indices[e+1]], foot_y[indices[e]:indices[e+1]], color = colors[e])
plt.scatter(foot_x[indices[e]], foot_y[indices[e]], color = colors[e])
## Indicate the events
for i in [3,1]:
plt.subplot(2,2,i)
plt.axvline(x = events[e], color = colors[e], label = labels[e])
## Legends and labels
plt.subplot(221)
plt.xticks([])
plt.ylabel('Horizontal position')
plt.subplot(223)
plt.ylabel('Vertical position')
plt.xlabel('Time')
plt.subplot(122)
plt.xlabel('Horizontal position')
plt.ylabel('Vertical position')
plt.title('Foot trajectory')
## CoM position
plt.figure()
for e in range(3):
for i in range(2):
for j in range(2):
plt.subplot(2,3,1+i+3*j)
plt.plot(times[indices[e]:indices[e+1]+1],
result[i+2*j,indices[e]:indices[e+1]+1],
color = colors[e])
plt.subplot(133)
plt.plot(result[0,indices[e]:indices[e+1]+1],
result[1,indices[e]:indices[e+1]+1], color = colors[e])
## Indicate the events
for i in range(2):
for j in range(2):
plt.subplot(2,3,1+i+3*j)
plt.axvline(x = events[e], color = colors[e],
label = labels[e])
plt.subplot(133)
index = np.argmax(times >= events[e])
plt.scatter(result[0,index], result[1,index], color = colors[e])
## Legends and labels
plt.subplot(231)
plt.legend(loc = 2)
plt.xticks([])
plt.ylabel('Horizontal position')
plt.subplot(232)
plt.xticks([])
plt.ylabel('Vertical position')
plt.subplot(234)
plt.xlabel('Time')
plt.ylabel('Horizontal speed')
plt.subplot(235)
plt.xlabel('Time')
plt.ylabel('Vertical speed')
plt.subplot(133)
plt.xlabel('Horizontal position')
plt.ylabel('Vertical position')
plt.title('CoM trajectory')
else:
print('The trial was a failure') | [
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detectron2/distiller_zoo/CC.py | lijingyao20010602/Dilation-FasterRCNN | 1 | 75286 | <reponame>lijingyao20010602/Dilation-FasterRCNN<gh_stars>1-10
from __future__ import print_function
import torch
import torch.nn as nn
class Correlation(nn.Module):
"""Correlation Congruence for Knowledge Distillation, ICCV 2019.
The authors nicely shared the code with me. I restructured their code to be
compatible with my running framework. Credits go to the original author"""
def __init__(self):
super(Correlation, self).__init__()
def forward(self, f_s, f_t):
# delta:两个特征矩阵的差
delta = torch.abs(f_s - f_t)
# delta[:-1]* delta[1:]中的第i行表示第i和第i+1个batch的delta特征向量点乘
# 求和后表示第i和第i+1个batch的相异程度
# 求平均表示两两batch的平均delta相异程度
loss = torch.mean((delta[:-1] * delta[1:]).sum(1))
return loss
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] |
dota2MemComm/dota2comm.py | Keithenneu/dota2comm | 13 | 123457 | <filename>dota2MemComm/dota2comm.py
import sys
from ctypes import cdll, c_char_p, c_void_p, cast
class Dota2Comm:
def __init__(self, name):
self.__dota2comm = cdll.LoadLibrary("dota2comm.dll")
self.name = name
self.__name = name.encode()
self.__receiveMessage = self.__dota2comm.receiveMessage
self.__receiveMessage.argtypes = [c_char_p]
self.__receiveMessage.restype = c_void_p
self.__sendMessage = self.__dota2comm.sendMessage
self.__sendMessage.argtypes = [c_char_p, c_char_p]
self.__freeString = self.__dota2comm.freeString
self.__freeString.argtypes = [c_void_p]
err = self.__dota2comm.init(self.__name)
if err != 0:
raise Exception("init failed! error code %d" % err)
nrofclients = self.__dota2comm.getNrConnectedClients(self.__name)
if nrofclients < 1:
raise Exception("No clients found. Did the game start?")
def receiveMessage(self):
msg = self.__receiveMessage(self.__name)
if msg is None:
return None
else:
ptr = msg
msg = cast(msg, c_char_p).value
self.__freeString(ptr)
return msg.decode()[:-len(self.name)]#removing r_marker
def sendMessage(self, message):
return self.__sendMessage(self.__name, message.encode())
def exit(self):
pass | [
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nvc-api/app/controllers/api/vm.py | BiznetGIO/nvc-lite | 0 | 1604264 | <reponame>BiznetGIO/nvc-lite<filename>nvc-api/app/controllers/api/vm.py
from app.helpers.rest import *
from neo.libs import vm
from neo.libs import orchestration as orch
from app.middlewares import auth
from app.helpers.session import *
from app.libs import neo, utils
from flask_restful import Resource, request
class GetListVm(Resource):
@auth.login_required
def get(self):
nvc_images_data = list()
redis_data = utils.get_redis(request.headers['Access-Token'])
nvc_images = utils.parse_nvc_images(redis_data['region'])
nvc_images = nvc_images[redis_data['region']]
try:
nvc_images_data = neo.get_nvc(request.headers['Access-Token'],
nvc_images)
except Exception as e:
return response(401, message=str(e))
else:
return response(200, data=nvc_images_data)
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] |
software/python/addons/remote_console/server_demo.py | ltstein/SCUTTLE | 0 | 46424 | # This file is just a basic example of the server comunication structure to a client program.
# The server is run on the embedded computer and passes data to a client on your local pc
# over a direct wifi connection. This can be used to display telemetry.
import time
import json
import socket
def current_time(start_time):
current_time = time.time() - start_time
day = current_time // (24 * 3600)
current_time = current_time % (24 * 3600)
hour = current_time // 3600
current_time %= 3600
minutes = current_time // 60
current_time %= 60
seconds = round(current_time,3)
return hour, minutes, seconds
def log(*args):
t = current_time(start_time)
print("%02d:%02d:%02.3f -" % (t[0],t[1],t[2]),' '.join(map(str, args)))
ip = "0.0.0.0" # 0.0.0.0 will make the server accessable on all network interfaces
port = 2442 # Port to run server on
start_time = time.time() # Record start time for logging
socket = socket.socket(socket.AF_INET, socket.SOCK_DGRAM) # Setup UDP Communication
socket.bind((ip, port))
print("Bound to IP: ",ip,"\n\t Port:",port)
print("\nServer running!")
while 1:
data = {
"a": 1,
"b": 2,
"c": 3
}
######################################
# UPDATE DATA HERE
# Example:
# data["batt_v"] = analog_read(battery)
######################################
try:
request, ip = socket.recvfrom(1024) # Wait until data is received
request = json.loads(request.decode('utf-8')) # Converts data back from bytes to string
log("Received Request from", ip[0], "for:", request) # Log to console
packet = [] # Create empty list to construct packet
for item in request: # Iterate through requested items and
# assemble packet in order requested
if item in data: # Check requested item exists in data dictionary
packet.append(data[item]) # If items exists append to end of packet
elif item not in data: # If item doesnt exist in data dictionary
log("Item \"",item,"\"", "does not exist!") # Log to console
packet.append(None) # append 'None' for better error handling
packet = json.dumps(packet) # Convert message to bytes
socket.sendto(packet.encode('utf-8'), ip) # Send back to device that requested
log("Sent response", packet,"to",ip[0]) # Log to console
except Exception as e: # If there is an error
print(e) # Print error
exit() # Exit code. Replace with "pass" for code to move on after error
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tests/benchmarks/garage/tf/algos/benchmark_ddpg.py | bainro/garage | 0 | 188937 | <filename>tests/benchmarks/garage/tf/algos/benchmark_ddpg.py
"""This script creates a regression test over garage-DDPG and baselines-DDPG.
It get Mujoco1M benchmarks from baselines benchmark, and test each task in
its trial times on garage model and baselines model. For each task, there will
be `trial` times with different random seeds. For each trial, there will be two
log directories corresponding to baselines and garage. And there will be a plot
plotting the average return curve from baselines and garage.
"""
import datetime
import os
import os.path as osp
import random
from baselines import bench
from baselines import logger as baselines_logger
from baselines.bench import benchmarks
from baselines.common.misc_util import set_global_seeds
from baselines.common.vec_env import DummyVecEnv
from baselines.ddpg import ddpg
from baselines.logger import configure
import dowel
from dowel import logger as dowel_logger
import gym
import pytest
import tensorflow as tf
from garage.envs import normalize
from garage.experiment import deterministic
from garage.np.exploration_strategies import OUStrategy
from garage.replay_buffer import SimpleReplayBuffer
from garage.tf.algos import DDPG
from garage.tf.envs import TfEnv
from garage.tf.experiment import LocalTFRunner
from garage.tf.policies import ContinuousMLPPolicy
from garage.tf.q_functions import ContinuousMLPQFunction
from tests.fixtures import snapshot_config
import tests.helpers as Rh
from tests.wrappers import AutoStopEnv
# Hyperparams for baselines and garage
params = {
'policy_lr': 1e-4,
'qf_lr': 1e-3,
'policy_hidden_sizes': [64, 64],
'qf_hidden_sizes': [64, 64],
'n_epochs': 500,
'steps_per_epoch': 20,
'n_rollout_steps': 100,
'n_train_steps': 50,
'discount': 0.9,
'tau': 1e-2,
'replay_buffer_size': int(1e6),
'sigma': 0.2,
}
def benchmark_ddpg():
"""Compare benchmarks between garage and baselines."""
# Load Mujoco1M tasks, you can check other benchmarks here
# https://github.com/openai/baselines/blob/master/baselines/bench/benchmarks.py
mujoco1m = benchmarks.get_benchmark('Mujoco1M')
timestamp = datetime.datetime.now().strftime('%Y-%m-%d-%H-%M-%S-%f')
benchmark_dir = osp.join(os.getcwd(), 'data', 'local', 'benchmarks',
'ddpg', timestamp)
result_json = {}
for task in mujoco1m['tasks']:
env_id = task['env_id']
env = gym.make(env_id)
baseline_env = AutoStopEnv(env_name=env_id,
max_path_length=params['n_rollout_steps'])
seeds = random.sample(range(100), task['trials'])
task_dir = osp.join(benchmark_dir, env_id)
plt_file = osp.join(benchmark_dir, '{}_benchmark.png'.format(env_id))
relplt_file = osp.join(benchmark_dir,
'{}_benchmark_mean.png'.format(env_id))
baselines_csvs = []
garage_csvs = []
for trial in range(task['trials']):
env.reset()
baseline_env.reset()
seed = seeds[trial]
trial_dir = osp.join(task_dir,
'trial_{}_seed_{}'.format(trial + 1, seed))
garage_dir = osp.join(trial_dir, 'garage')
baselines_dir = osp.join(trial_dir, 'baselines')
with tf.Graph().as_default():
# Run garage algorithms
garage_csv = run_garage(env, seed, garage_dir)
# Run baselines algorithms
baselines_csv = run_baselines(baseline_env, seed,
baselines_dir)
garage_csvs.append(garage_csv)
baselines_csvs.append(baselines_csv)
env.close()
Rh.plot(b_csvs=baselines_csvs,
g_csvs=garage_csvs,
g_x='Epoch',
g_y='Evaluation/AverageReturn',
g_z='Garage',
b_x='total/epochs',
b_y='rollout/return',
b_z='Baseline',
trials=task['trials'],
seeds=seeds,
plt_file=plt_file,
env_id=env_id,
x_label='Epoch',
y_label='Evaluation/AverageReturn')
Rh.relplot(g_csvs=garage_csvs,
b_csvs=baselines_csvs,
g_x='Epoch',
g_y='Evaluation/AverageReturn',
g_z='Garage',
b_x='total/epochs',
b_y='rollout/return',
b_z='Baseline',
trials=task['trials'],
seeds=seeds,
plt_file=relplt_file,
env_id=env_id,
x_label='Epoch',
y_label='Evaluation/AverageReturn')
result_json[env_id] = Rh.create_json(
b_csvs=baselines_csvs,
g_csvs=garage_csvs,
seeds=seeds,
trails=task['trials'],
g_x='Epoch',
g_y='Evaluation/AverageReturn',
b_x='total/epochs',
b_y='rollout/return',
factor_g=params['steps_per_epoch'] * params['n_rollout_steps'],
factor_b=1)
Rh.write_file(result_json, 'DDPG')
def run_garage(env, seed, log_dir):
"""Create garage model and training.
Replace the ppo with the algorithm you want to run.
Args:
env (gym.Env): Environment of the task.
seed (int): Random seed for the trial.
log_dir (str): Log dir path.
Returns:
str: The log file path.
"""
deterministic.set_seed(seed)
with LocalTFRunner(snapshot_config) as runner:
env = TfEnv(normalize(env))
# Set up params for ddpg
action_noise = OUStrategy(env.spec, sigma=params['sigma'])
policy = ContinuousMLPPolicy(
env_spec=env.spec,
hidden_sizes=params['policy_hidden_sizes'],
hidden_nonlinearity=tf.nn.relu,
output_nonlinearity=tf.nn.tanh)
qf = ContinuousMLPQFunction(env_spec=env.spec,
hidden_sizes=params['qf_hidden_sizes'],
hidden_nonlinearity=tf.nn.relu)
replay_buffer = SimpleReplayBuffer(
env_spec=env.spec,
size_in_transitions=params['replay_buffer_size'],
time_horizon=params['n_rollout_steps'])
algo = DDPG(env_spec=env.spec,
policy=policy,
qf=qf,
replay_buffer=replay_buffer,
steps_per_epoch=params['steps_per_epoch'],
policy_lr=params['policy_lr'],
qf_lr=params['qf_lr'],
target_update_tau=params['tau'],
n_train_steps=params['n_train_steps'],
discount=params['discount'],
min_buffer_size=int(1e4),
exploration_strategy=action_noise,
policy_optimizer=tf.compat.v1.train.AdamOptimizer,
qf_optimizer=tf.compat.v1.train.AdamOptimizer)
# Set up logger since we are not using run_experiment
tabular_log_file = osp.join(log_dir, 'progress.csv')
tensorboard_log_dir = osp.join(log_dir)
dowel_logger.add_output(dowel.StdOutput())
dowel_logger.add_output(dowel.CsvOutput(tabular_log_file))
dowel_logger.add_output(dowel.TensorBoardOutput(tensorboard_log_dir))
runner.setup(algo, env)
runner.train(n_epochs=params['n_epochs'],
batch_size=params['n_rollout_steps'])
dowel_logger.remove_all()
return tabular_log_file
def run_baselines(env, seed, log_dir):
"""Create baselines model and training.
Replace the ppo and its training with the algorithm you want to run.
Args:
env (gym.Env): Environment of the task.
seed (int): Random seed for the trial.
log_dir (str): Log dir path.
Returns:
str: The log file path.
"""
seed = seed + 1000000
set_global_seeds(seed)
env.seed(seed)
# Set up logger for baselines
configure(dir=log_dir, format_strs=['stdout', 'log', 'csv', 'tensorboard'])
baselines_logger.info('seed={}, logdir={}'.format(
seed, baselines_logger.get_dir()))
env = DummyVecEnv([
lambda: bench.Monitor(
env, baselines_logger.get_dir(), allow_early_resets=True)
])
ddpg.learn(network='mlp',
env=env,
nb_epochs=params['n_epochs'],
nb_epoch_cycles=params['steps_per_epoch'],
normalize_observations=False,
critic_l2_reg=0,
actor_lr=params['policy_lr'],
critic_lr=params['qf_lr'],
gamma=params['discount'],
nb_train_steps=params['n_train_steps'],
nb_rollout_steps=params['n_rollout_steps'],
nb_eval_steps=100)
return osp.join(log_dir, 'progress.csv')
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] |
examples/ecs/server_interface.py | wangrui1121/huaweicloud-sdk-python | 43 | 20046 | <filename>examples/ecs/server_interface.py<gh_stars>10-100
# -*-coding:utf-8 -*-
from openstack import connection
# create connection
username = "xxxxxx"
password = "<PASSWORD>"
projectId = "xxxxxxxxxxxxxxxxxxxxxxxxxxxx" # tenant ID
userDomainId = "xxxxxxxxxxxxxxxxxxxxxxxxxxxx" # user account ID
auth_url = "xxxxxxxxxxxxxxxxxxxxxxxxxxxx" # endpoint url
conn = connection.Connection(auth_url=auth_url,
user_domain_id=userDomainId,
project_id=projectId,
username=username,
password=password)
# create server interface
def create_server_interface(server_id, net_id=None, port_id=None,
fixed_ip=None):
attrs = {"net_id": net_id, "port_id": port_id, "fixed_ip": fixed_ip}
kwargs = {}
for key in attrs:
if attrs[key]:
kwargs[key] = attrs[key]
print(kwargs)
if kwargs == {}:
message = "Parameter error"
raise exceptions.SDKException(message)
server = conn.compute.create_server_interface(server_id, **kwargs)
print(server)
return server
# delete interface
def delete_server_interface(server_interface, servr_id):
conn.compute.delete_server_interface(server_interface, server=servr_id)
# show interface detail
def get_server_interface(server_interface, servr_id):
server_ifa = conn.compute.get_server_interface(server_interface,
server=servr_id)
print(server_ifa)
# get list of interface
def server_interfaces(server_id):
server_ifas = conn.compute.server_interfaces(server_id)
for ifa in server_ifas:
print(ifa)
if __name__ == "__main__":
server_id = "8700184b-79ff-414b-ab8e-11ed01bd3d3d"
net_id = "e2103034-dcf3-4ac3-b551-6d5dd8fadb6e"
server = create_server_interface(server_id, net_id)
get_server_interface(server.id, server_id)
server_interfaces(server_id)
delete_server_interface(server.id, server_id)
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29898,
2974,
29889,
333,
29892,
1923,
29918,
333,
29897,
13,
2
] |
REDServer/gunicorn.conf.py | illusioneering/RED | 1 | 25481 | bind = "0.0.0.0:80"
| [
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29900,
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13,
2
] |
exec/compressible_mui/scripts/4spec/vert_stat.py | PeculiarOvertones/FHDeX | 3 | 143049 | import numpy as np
NSAMPLE=64
NSPEC=4
for spec in range(NSPEC):
list = []
for i in range(NSAMPLE):
infile = "RUN%d/res.mass_spec%d_final_vert" % (i+1,spec+1)
a = np.loadtxt(infile)
list.append(a)
list = np.transpose(np.array(list))
mean = np.mean(list,axis=1)
std = np.std(list,axis=1,ddof=1)
res_stat = np.transpose([mean,std])
outfile = "res.mass_spec%d_final_vert_stat" % (spec+1)
np.savetxt(outfile,res_stat)
| [
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13,
2
] |
EduData/Task/__init__.py | BAOOOOOM/EduData | 98 | 6513 | # coding: utf-8
# 2019/8/23 @ tongshiwei
| [
1,
396,
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29941,
732,
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13,
2
] |
L7-folsom-floodfreq.py | jdherman/eci273 | 10 | 159182 | <filename>L7-folsom-floodfreq.py
import numpy as np
import matplotlib.pyplot as plt
from scipy import stats
x = np.loadtxt('data/folsom-annual-peak-flow.csv',
delimiter=',',
skiprows=1, usecols=[1]) # data in cfs
y = np.log(x)
N = len(y)
# plt.hist(y)
# plt.show()
# what is the estimate of the 100-year flood?
# assuming 2-parameter lognormal distribution
T = 100
m = np.mean(y)
s = np.std(y)
Zp = stats.norm.ppf(1 - 1/T)
Qt = np.exp(m + Zp*s)
print('Lognormal %d-year flood: %0.2f cfs' % (T,Qt))
# how different is the LP3?
# g = stats.skew(y)
# Kp = (2/g)*(1 + g*Zp/6 - g**2/36)**3 - 2/g
# Qt = np.exp(m + Kp*s)
# print('LP3 %d-year flood: %0.2f cfs' % (T,Qt))
# confidence interval for lognormal
# comment out LP3 part first
halfwidth = stats.norm.ppf(0.975)*np.sqrt((s**2/N)*(1 + Zp**2/2))
lb = np.exp(m + Zp*s - halfwidth)
ub = np.exp(m + Zp*s + halfwidth)
print('95%% CI: [%f, %f]' % (lb,ub))
| [
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test/unit/test_structures.py | piotr-rusin/spam-lists | 7 | 1617001 | <reponame>piotr-rusin/spam-lists
# -*- coding: utf-8 -*-
"""Tests for functions and classes defined in spam_lists.structures."""
from __future__ import unicode_literals
# pylint: disable=redefined-builtin
from builtins import str, range, object
from nose_parameterized import parameterized
from spam_lists.exceptions import InvalidHostError, InvalidHostnameError
from spam_lists.structures import (
Hostname, create_host, IPv4Address, IPv6Address
)
from test.compat import unittest, Mock, patch, MagicMock
class BaseHostTest(object):
"""Tests for subclasses of Host class.
:ivar tested_instance: an instance of tested class to be used
in tests
:cvar class_to_test: a class to be tested
"""
def setUp(self):
self.tested_instance.value = MagicMock()
def test_lt_for_smaller_value(self):
"""Test if False is returned for a smaller value."""
self.tested_instance.value.__lt__.return_value = False
self.assertFalse(self.tested_instance < Mock())
def test_lt_for_larger_value(self):
"""Test if True is returned for a larger value."""
self.tested_instance.value.__lt__.return_value = True
self.assertTrue(self.tested_instance < Mock())
def test_lt_for_missing_value_attribute(self):
"""Test for TypeError when value misses a 'value' attribute."""
other = Mock(spec=[])
self.assertRaises(
TypeError,
self.tested_instance.__lt__,
other
)
@parameterized.expand([
('type_error', TypeError),
('not_implemented_return_value', lambda o: NotImplemented)
])
def test_lt_for_missing_to_unicode_method_to_handle(self, _, side_effect):
"""Test for TypeError when the other misses to_unicode method.
:param side_effect: a side effect for __lt__ method of value
attribute of the tested instance.
"""
other = Mock(spec=['value'])
value = MagicMock()
value.__lt__.side_effect = side_effect
self.tested_instance.value = value
self.assertRaises(
TypeError,
self.tested_instance.__lt__,
other
)
class HostnameTest(BaseHostTest, unittest.TestCase):
"""Tests for Hostname class.
:cvar superdomain_str: a string value representing a parent of
a domain used to create tested instance
:cvar domain_str: a string value used as an argument to
constructor when creating tested instance
:cvar subdomain_str: a string value representing a child domain
to the one used to create tested instance
:cvar superdomain: a Hostname instance representing a parent
of the tested instance
:cvar domain: a Hostname instance to be tested
:cvar subdomain: a Hostname instance representing a child
of the tested instance
:cvar unrelated_domain: a Hostname instance representing
a domain unrelated to the one represented by tested instance
"""
# pylint: disable=too-many-public-methods
class_to_test = Hostname
superdomain_str = 'superdomain.com'
domain_str = 'domain.'+superdomain_str
subdomain_str = 'subdomain.'+domain_str
superdomain = class_to_test(superdomain_str)
domain = class_to_test(domain_str)
subdomain = class_to_test(subdomain_str)
unrelated_domain = class_to_test('other.com')
tested_instance = class_to_test('compared.com')
@parameterized.expand([
('hostname', '-e'),
('hostname', '/e'),
('argument', 123)
])
def test_constructor_for_invalid(self, _, value):
"""Test if InvalidHostnameError is raised.
:param value: a value used to construct an instance of
the tested class
"""
self.assertRaises(InvalidHostnameError, Hostname, value)
@parameterized.expand([
('unrelated_domain', unrelated_domain, False),
('a_subdomain', subdomain, False),
('non_hostname_object', '172.16.31.10', False),
('the_same_domain', domain, True),
('a_superdomain', superdomain, True)
])
def test_is_subdomain_for(self, _, other, expected):
"""Test if an expected value is returned.
:param other: the other object passed as argument of
the tested method
:param expected: a boolean value expected to be returned
for given argument
"""
actual = self.domain.is_subdomain(other)
if expected:
self.assertTrue(actual)
else:
self.assertFalse(actual)
@parameterized.expand([
('returns_false', False),
('returns_true', True)
])
def test_lt_for_not_comparable_values(self, _, result):
self.tested_instance.value.__lt__.side_effect = TypeError
str_value = self.tested_instance.to_unicode()
str_value.__lt__.return_value = result
other = Mock()
assertion = self.assertTrue if result else self.assertFalse
assertion(self.tested_instance < other)
class IPAddressTestMixin(BaseHostTest):
"""Tests for subclasses of IPAddress.
:cvar class_to_test: a subclass of IPAddress to be tested
"""
def setUp(self):
self.value_constructor_patcher = patch.object(
self.class_to_test,
'factory',
Mock()
)
self.value_constructor_mock = self.value_constructor_patcher.start()
self.name_from_ip_patcher = patch('spam_lists.structures.name_from_ip')
self.name_from_ip_mock = self.name_from_ip_patcher.start()
self.tested_instance = self.class_to_test(Mock())
super(IPAddressTestMixin, self).setUp()
def tearDown(self):
self.value_constructor_patcher.stop()
self.name_from_ip_patcher.stop()
def test_constructor_for_invalid_argument(self):
"""Test if an error is raised for an invalid argument."""
self.value_constructor_mock.side_effect = ValueError
self.assertRaises(
self.class_to_test.invalid_ip_error_type,
self.class_to_test,
Mock()
)
def test_create_relative_domain_for_ip(self):
"""Test if accessing relative_domain creates a relative domain."""
# pylint: disable=W0104
self.tested_instance.relative_domain
self.name_from_ip_mock.assert_called_once_with(
str(self.tested_instance.value)
)
name = self.name_from_ip_mock.return_value
name.relativize.assert_called_once_with(
self.class_to_test.reverse_domain
)
def test_relative_domain_value(self):
"""Test if relative_domain has an expected value."""
name = self.name_from_ip_mock.return_value
expected = name.relativize.return_value
actual = self.tested_instance.relative_domain
self.assertEqual(expected, actual)
def test_lt_for_not_comparable_values(self):
"""Test a result of comparing non-comparable values.
The result is expected to be equal to that of comparison of
string values of both objects.
"""
self.tested_instance.value.__lt__.side_effect = TypeError
str_value = self.tested_instance.to_unicode()
other = Mock()
other_str_value = 'other_str'
other.to_unicode.return_value = other_str_value
self.assertEqual(
str_value < other_str_value,
self.tested_instance < other
)
class IPv4AddressTest(IPAddressTestMixin, unittest.TestCase):
"""Tests for IPv4Address class."""
# pylint: disable=too-many-public-methods
class_to_test = IPv4Address
class IPv6AddressTest(IPAddressTestMixin, unittest.TestCase):
"""Tests for IPv6Address class."""
# pylint: disable=too-many-public-methods
class_to_test = IPv6Address
class CreateHostTest(unittest.TestCase):
"""Tests for create_host function.
:cvar factories: a list of mocks representing factories used by
the function during tests
"""
# pylint: disable=too-many-public-methods
def setUp(self):
self.factories = tuple(Mock() for _ in range(5))
@parameterized.expand([
('v4', '127.0.0.1'),
('v6', '2001:db8:abc:125::45'),
])
def test_host_for_ip(self, _, value):
"""Test return value of the function for IP address argument.
:param value: an IP address to be passed to the create_host
function
"""
ip_address = self.factories[0]
expected = ip_address(value)
actual = create_host(self.factories, value)
self.assertEqual(actual, expected)
def test_host_for_hostname(self):
"""Test return value of the function for hostname argument.
The function is expected to return an object returned by a host
factory for given hostname.
"""
for i, factory in enumerate(self.factories):
if i != 1:
factory.side_effect = InvalidHostError
host_factory = self.factories[1]
host_value = 'abc.com'
expected = host_factory(host_value)
actual = create_host(self.factories, host_value)
self.assertEqual(expected, actual)
@parameterized.expand([
('ipv4', '299.0.0.1'),
('ipv4', '99.22.33.1.23'),
('ipv6', '2001:db8:abc:125::4h'),
('ipv6', '2001:db8:abcef:125::43'),
('hostname', '-e'),
('hostname', '/e')
])
def test_host_for_invalid(self, _, value):
"""Test for InvalidHostError when the argument is invalid.
:param value: a value to be passed as the argument to
the create_host function
"""
for factory in self.factories:
factory.side_effect = InvalidHostError
self.assertRaises(InvalidHostError, create_host, self.factories, value)
if __name__ == "__main__":
# import sys;sys.argv = ['', 'Test.testName']
unittest.main()
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Turtle-Alpha.py | Space-Luis/Python_Turtle_Example | 0 | 173787 | <reponame>Space-Luis/Python_Turtle_Example<gh_stars>0
import turtle
T = turtle.Turtle()
T.shape("Turtle") #Turtle의 모양을 거북이로 지정
T.color("LightBlue") #색깔을 LightBlue로 변경
T.forward(100) #Turtle을 앞으로 100만큼 가도록 실행
T.circle(100) #Turtle을 반지름이 100이도록 원을 그림
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main.py | Abhay420000/List-of-all-Files-and-Directories | 0 | 71658 | # -*- coding: utf-8 -*-
"""
Created on Sat May 1 18:26:28 2021
@author: abhay
version: 0.0.1
"""
import os,argparse
stack = []
'''
Stack is Used as a directory(folder/path) pointer due to its property of LIFO
It's last element is current directory Current Directory
'''
ipath = ''
'''
This is the path made every time when we move from
directory to directory
Maked by using Stack
'''
unordereddat = {}
'''
Data added when a directory is found
eg.{'MYDIR':[file1,dir2,file2],'dir2':[file5,file6]}
Note:Uncomment KeepRec if you want to use.
'''
def stackUpdate(dirr,operation):
'''
Its going to update here when required
Its required when we have to go back or forward
in a directory(path).
Note:Whenever do stackUpdate always do buildUpdate
'''
global stack
if operation == 'a':
stack.append(dirr)
elif operation == 'p' and len(stack) != 0:
stack.pop()
def buildPath():
'''
This is going to build path for us using stack.
Note:Whenever do stackUpdate always do buildUpdate
'''
global stack,ipath,path
ipath = path
if len(stack) > 0:
for i in range(0,len(stack)):
ipath = ipath + stack[i] + '/'
else:
ipath = path
def keepRec():#Not required (Optional)
'''
Used to keep record of each and every files in a directory.
It must be called to do so.
A dictionary with key = Folder name, values =[file1,file2,file3]
'''
global unordereddat,ipath,stack
files = []
with os.scandir(ipath) as ent:
for i in ent:
files.append(i.name)
try:
dirc = stack[-1]
except:
#for the frist time
dirc = path
unordereddat[dirc] = files
def datas():
'''
This function is going to do our actual work of listing
files and directories order wise.
'''
global ps,wp,f
buildPath()
#keepRec()
with os.scandir(ipath) as ent:
for i in ent:
#listing all files
if os.path.isfile(ipath+i.name):
if ps == "p" and wp == "wp":
print(ipath+i.name+'\n')
elif ps == "p" and wp == "nwp":
print(len(stack)*'\t'+'-'+i.name)
elif ps == "s" and wp == "wp":
f.write(ipath+i.name+'\n')
elif ps == "s" and wp == "nwp":
f.write(len(stack)*'\t'+'-'+i.name)
#listing directorie and going inside it
elif os.path.isdir(ipath+i.name):
if ps == "p" and wp == "wp":
print(ipath+i.name+'\n')
elif ps == "p" and wp == "nwp":
print(len(stack)*'\t'+'-'+i.name)
elif ps == "s" and wp == "wp":
f.write(ipath+i.name+'\n')
elif ps == "s" and wp == "nwp":
f.write(len(stack)*'\t'+'-'+i.name)
stackUpdate(i.name,'a')
buildPath()
#keepRec()
datas()
stackUpdate(ipath, 'p')
buildPath()
parser = argparse.ArgumentParser()
parser.add_argument("Path", help = "Enter Main Path (path of directory inside which you want list)")
parser.add_argument("Print_Store", help = "Print or Store Output", choices = ["p","s"])
parser.add_argument("With_Without_Path", help = "What you want output with full path or without path(Only Name) ?", choices = ["wp","nwp"])
args = parser.parse_args()
path = args.Path
ps = args.Print_Store
wp = args.With_Without_Path
if ps == "s":
f = open('Output.txt','w')
datas()
if ps == "s":
f.close()
#print(unordereddat)#Gives a dictionary with key = Folder name, values =[file1,file2,file3]
#Note: Uncomment keepRec above in code frist
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2
] |
src/kgmk/cp/read_stdin.py | kagemeka/python | 0 | 1603593 | import typing
class ReadStdin:
def __call__(
self,
) -> bytes:
return next(self.__chunks)
def __init__(
self,
) -> typing.NoReturn:
import sys
self.__buf = (
sys.stdin.buffer
)
self.__chunks = (
self.__read_chunks()
)
def int(
self,
) -> int:
return int(self())
def __read_chunks(
self,
) -> typing.Iterator[bytes]:
while 1:
l = self.__buf.readline()
for chunk in l.split():
yield chunk
def str(
self,
) -> str:
b = self()
return b.decode() | [
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2
] |
chapter_13/pymail.py | bimri/programming_python | 0 | 12819 | "A Console-Based Email Client"
#!/usr/local/bin/python
"""
##########################################################################
pymail - a simple console email interface client in Python; uses Python
poplib module to view POP email messages, smtplib to send new mails, and
the email package to extract mail headers and payload and compose mails;
##########################################################################
"""
import poplib, smtplib, email.utils, mailconfig
from email.parser import Parser
from email.message import Message
fetchEncoding = mailconfig.fetchEncoding
def decodeToUnicode(messageBytes, fetchEncoding=fetchEncoding):
"""
4E, Py3.1: decode fetched bytes to str Unicode string for display or parsing;
use global setting (or by platform default, hdrs inspection, intelligent guess);
in Python 3.2/3.3, this step may not be required: if so, return message intact;
"""
return [line.decode(fetchEncoding) for line in messageBytes]
def splitaddrs(field):
"""
4E: split address list on commas, allowing for commas in name parts
"""
pairs = email.utils.getaddresses([field]) # [(name,addr)]
return [email.utils.formataddr(pair) for pair in pairs] # [name <addr>]
def inputmessage():
import sys
From = input('From? ').strip()
To = input('To? ').strip() # datetime hdr may be set auto
To = splitaddrs(To) # possible many, name+<addr> okay
Subj = input('Subj? ').strip() # don't split blindly on ',' or ';'
print('Type message text, end with line="."')
text = ''
while True:
line = sys.stdin.readline()
if line == '.\n': break
text += line
return From, To, Subj, text
def sendmessage():
From, To, Subj, text = inputmessage()
msg = Message()
msg['From'] = From
msg['To'] = ', '.join(To) # join for hdr, not send
msg['Subject'] = Subj
msg['Date'] = email.utils.formatdate() # curr datetime, rfc2822
msg.set_payload(text)
server = smtplib.SMTP(mailconfig.smtpservername)
try:
failed = server.sendmail(From, To, str(msg)) # may also raise exc
except:
print('Error - send failed')
else:
if failed: print('Failed:', failed)
def connect(servername, user, passwd):
print('Connecting...')
server = poplib.POP3(servername)
server.user(user) # connect, log in to mail server
server.pass_(passwd) # pass is a reserved word
print(server.getwelcome()) # print returned greeting message
return server
def loadmessages(servername, user, passwd, loadfrom=1):
server = connect(servername, user, passwd)
try:
print(server.list())
(msgCount, msgBytes) = server.stat()
print('There are', msgCount, 'mail messages in', msgBytes, 'bytes')
print('Retrieving...')
msgList = [] # fetch mail now
for i in range(loadfrom, msgCount+1): # empty if low >= high
(hdr, message, octets) = server.retr(i) # save text on list
message = decodeToUnicode(message) # 4E, Py3.1: bytes to str
msgList.append('\n'.join(message)) # leave mail on server
finally:
server.quit() # unlock the mail box
assert len(msgList) == (msgCount - loadfrom) + 1 # msg nums start at 1
return msgList
def deletemessages(servername, user, passwd, toDelete, verify=True):
print('To be deleted:', toDelete)
if verify and input('Delete?')[:1] not in ['y', 'Y']:
print('Delete cancelled.')
else:
server = connect(servername, user, passwd)
try:
print('Deleting messages from server...')
for msgnum in toDelete: # reconnect to delete mail
server.dele(msgnum) # mbox locked until quit()
finally:
server.quit()
def showindex(msgList):
count = 0 # show some mail headers
for msgtext in msgList:
msghdrs = Parser().parsestr(msgtext, headersonly=True) # expects str in 3.1
count += 1
print('%d:\t%d bytes' % (count, len(msgtext)))
for hdr in ('From', 'To', 'Date', 'Subject'):
try:
print('\t%-8s=>%s' % (hdr, msghdrs[hdr]))
except KeyError:
print('\t%-8s=>(unknown)' % hdr)
if count % 5 == 0:
input('[Press Enter key]') # pause after each 5
def showmessage(i, msgList):
if 1 <= i <= len(msgList):
#print(msgList[i-1]) # old: prints entire mail--hdrs+text
print('-' * 79)
msg = Parser().parsestr(msgList[i-1]) # expects str in 3.1
content = msg.get_payload() # prints payload: string, or [Messages]
if isinstance(content, str): # keep just one end-line at end
content = content.rstrip() + '\n'
print(content)
print('-' * 79) # to get text only, see email.parsers
else:
print('Bad message number')
def savemessage(i, mailfile, msgList):
if 1 <= i <= len(msgList):
savefile = open(mailfile, 'a', encoding=mailconfig.fetchEncoding) # 4E
savefile.write('\n' + msgList[i-1] + '-'*80 + '\n')
else:
print('Bad message number')
def msgnum(command):
try:
return int(command.split()[1])
except:
return -1 # assume this is bad
helptext = """
Available commands:
i - index display
l n? - list all messages (or just message n)
d n? - mark all messages for deletion (or just message n)
s n? - save all messages to a file (or just message n)
m - compose and send a new mail message
q - quit pymail
? - display this help text
"""
def interact(msgList, mailfile):
showindex(msgList)
toDelete = []
while True:
try:
command = input('[Pymail] Action? (i, l, d, s, m, q, ?) ')
except EOFError:
command = 'q'
if not command: command = '*'
# quit
if command == 'q':
break
# index
elif command[0] == 'i':
showindex(msgList)
# list
elif command[0] == 'l':
if len(command) == 1:
for i in range(1, len(msgList)+1):
showmessage(i, msgList)
else:
showmessage(msgnum(command), msgList)
# save
elif command[0] == 's':
if len(command) == 1:
for i in range(1, len(msgList)+1):
savemessage(i, mailfile, msgList)
else:
savemessage(msgnum(command), mailfile, msgList)
# delete
elif command[0] == 'd':
if len(command) == 1: # delete all later
toDelete = list(range(1, len(msgList)+1)) # 3.x requires list
else:
delnum = msgnum(command)
if (1 <= delnum <= len(msgList)) and (delnum not in toDelete):
toDelete.append(delnum)
else:
print('Bad message number')
# mail
elif command[0] == 'm': # send a new mail via SMTP
sendmessage()
#execfile('smtpmail.py', {}) # alt: run file in own namespace
elif command[0] == '?':
print(helptext)
else:
print('What? -- type "?" for commands help')
return toDelete
if __name__ == '__main__':
import getpass, mailconfig
mailserver = mailconfig.popservername # ex: 'pop.rmi.net'
mailuser = mailconfig.popusername # ex: 'lutz'
mailfile = mailconfig.savemailfile # ex: r'c:\stuff\savemail'
mailpswd = getpass.getpass('Password for %s?' % mailserver)
print('[Pymail email client]')
msgList = loadmessages(mailserver, mailuser, mailpswd) # load all
toDelete = interact(msgList, mailfile)
if toDelete: deletemessages(mailserver, mailuser, mailpswd, toDelete)
print('Bye.')
| [
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pyExpenses/RecManip.py | JasonLai256/pyExpenses | 1 | 184620 | #! /usr/bin/env python
# -*- coding:utf-8 -*-
"""
pyExpenses.RecManip
~~~~~~~~~~~~~~~~~~~
Implements the interface's object that manipulator of records for pyExpenses.
:copyright: (c) 2012 by <NAME>.
:license: BSD, see LICENSE for more details.
"""
from datetime import date, timedelta
from ConfigManip import Config
import RecManipImpl
STORAGE_BACKEND = RecManipImpl.__dict__[Config.getInfo('StorageBackend')]
class RecManip(object):
def setUp(self, *args, **kwargs):
"""It's the method really initialize the instance. This should be
called after create a instance, the passing arguments can control
defferent options.
"""
self.impl = STORAGE_BACKEND(*args, **kwargs)
def updatePassword(self, oldpwd, newpwd):
self.impl.updatePassword(oldpwd, newpwd)
def cancelPassword(self, oldpwd):
from RecManipImpl import DEFAULT_PASSWORD
self.impl.updatePassword(oldpwd, DEFAULT_PASSWORD)
def addItem(self, rdate, base_rec):
"""add a basic record to storage."""
self.impl.addItem(rdate, base_rec)
def delItem(self, rdate, base_rec):
"""delete a specified record.
@NOTE: if date not exist,raise a exception.
"""
self.impl.delItem(rdate, base_rec)
def updateItem(self, rdate, base_rec, new_rec):
self.impl.updateItem(rdate, base_rec, new_rec)
def getAll(self):
return self.impl.getAll()
def getInfo(self):
return self.impl.getInfo()
def date_range(self, begin, end):
"""Return a range of records in specified period.
@NOTE:
"""
return self.impl.date_range(begin, end)
def findDate(self, fdate):
"""find and return the matching record.
@NOTE: if date not exist,raise a exception.
"""
return self.impl.date_range(fdate, fdate + timedelta(1))
def findDates(self, fdate, nth=0):
return self.impl.date_range(fdate, fdate + timedelta(nth))
def clear(self):
"""clear all the data in data manipulator."""
self.impl.clear()
def save(self):
"""save all the data in data manipulator to permanent storage."""
self.impl.save()
def importRecord(self, filename):
self.impl.importRecord(filename)
def exportRecord(self, filename):
self.impl.exportRecord(filename)
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] |
docs/rips/tests/test_surfaces.py | OPM/ResInsight-UserDocumentation | 1 | 14297 | import sys
import os
import tempfile
from pathlib import Path
import pytest
sys.path.insert(1, os.path.join(sys.path[0], "../../"))
import rips
import dataroot
@pytest.mark.skipif(
sys.platform.startswith("linux"),
reason="Brugge is currently exceptionally slow on Linux",
)
def test_create_and_export_surface(rips_instance, initialize_test):
case_path = dataroot.PATH + "/Case_with_10_timesteps/Real0/BRUGGE_0000.EGRID"
case = rips_instance.project.load_case(path=case_path)
assert len(case.grids()) == 1
surface_collection = rips_instance.project.descendants(rips.SurfaceCollection)[0]
surface = surface_collection.new_surface(case, 5)
assert surface
with tempfile.TemporaryDirectory(prefix="rips") as tmpdirname:
path = Path(tmpdirname, "mysurface.ts")
print("Temporary folder: ", path.as_posix())
fname = surface.export_to_file(path.as_posix())
assert len(fname.values) == 1
assert path.exists()
| [
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] |
old_code/app.1.py | LucasBiason/python521 | 0 | 112685 | <filename>old_code/app.1.py
import flask
import pymongo
client = pymongo.MongoClient()
db = client.users
app = flask.Flask(__name__)
IS_AUTH = False
@app.route('users/sign-in', methods=['GET', 'POST'])
def sign_in():
if flask.request.method == 'POST':
form = flask.request.form
user = db.usuarios.find({'email':form['email']})
if not user:
return 'Usuário não encontrado'
if form['password'] == user['password']:
IS_AUTH = True
return flask.redirect('/dashboard')
return flask.render_template('sign-in.html')
@app.route('users/sign-up', methods=['POST'])
def sign_up():
form = flask.request.form
for user in db.usuarios.find():
if form['email'] == user['email']:
if form['password'] == user['password']:
return 'usuário já existente'
db.usuarios.insert(form)
return flask.redirect('/home')
@app.route('users/sign-out', methods=['POST'])
def sign_out():
pass
if __name__ == '__main__':
app.run(debug=True) | [
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code/df_basics.py | jrihds/pdat.github.io | 0 | 61647 | #!/usr/bin/env python
"""Basic operations on dataframes."""
import pandas as pd
# This script isn't for execution, just for notes
# explore the shape and contents of a dataframe
df.describe()
df.info()
df.shape
df.columns
df.index
df.head(10)
df.tail(10)
type(df)
# <class 'pandas.core.frame.DataFrame'>
type(df['a'])
# <class 'pandas.core.series.Series'>
type(df['a'].values)
# <class 'numpy.ndarray'>
# copy a dataframe
df2 = df.copy()
# create a new index column
df.reset_index()
# Drop any row containing 'NaN'
df.dropna()
# double brackets returns dataframe
df[['a']]
df[['a', 'c']]
# single brackets returns a Series
series = df["a"]
# iloc uses numbers, 0 based indexing
# [row, column]
df.iloc[:5, :] # first 5 rows, all columns
df.iloc[-5:, :] # last 5 rows, all columns
df.iloc[:, 1] # all rows, second column
# loc use text labels
df.loc[:, 'b':] # all rows, columns 'b' onwards
df.loc[3, 'a'] # row 4 from column 'a'
# Filter on a multi level index
# a
# one 0 1
# 1 2
# 2 3
# two 0 4
# 1 5
# 2 6
df.loc['one']
# a
# 0 1
# 1 2
# 2 3
# Filter on inner label
idx = pd.IndexSlice
df.loc[idx[:, 1], :]
# a
# one 1 2
# two 1 5
# Convet df column type into a data type
df['a'].astype(int)
# Coerce the column to into a numeric type
df['number'] = pd.to_numeric(df['number'], errors='coerce')
# Apply a lambda function over each row in a df
df['d'] = df['a'].apply(lambda x: x+1)
df['d'] = df.apply(lambda x: x['a']+1, axis=1)
# Drop duplicates
df = df.drop_duplicates()
# Calculate statitstics for a column
df['a'].median()
df['a'].std()
df['a'].mean()
df['a'].mode()
# Fill missing values in a column
df['a'] = df.a.fillna(0)
# Count non null values
df['a'].count()
# Print the 5th and 95th percentiles
df.quantile([0.05, 0.95])
# rolling window across data
# Given
# 0
# 0 0
# 1 1
# 2 2
# 3 3
# 4 4
# 5 5
# 6 6
# 7 7
# 8 8
# 9 9
df.rolling(5).max()
# 0
# 0 NaN
# 1 NaN
# 2 NaN
# 3 NaN
# 4 4.0
# 5 5.0
# 6 6.0
# 7 7.0
# 8 8.0
# 9 9.0
df.rolling(5).mean()
# 0
# 0 NaN
# 1 NaN
# 2 NaN
# 3 NaN
# 4 2.0 (0+1+2+3+4)/5 = 2
# 5 3.0
# 6 4.0
# 7 5.0
# 8 6.0
# 9 7.0
# Sort values based on index
df.sort_index()
df.sort_index(ascending=False)
# Sort values based on column
df.sort_values('Max TemperatureF')
# reindex sorts the index according to a list
# a
# 0 0
# 1 1
# 2 2
# 3 3
# 4 4
df.reindex([4, 3, 2, 1, 0])
# a
# 4 4
# 3 3
# 2 2
# 1 1
# 0 0
# ffil adds values if the new list contains indexes not in the dataframe
df.reindex([0, 1, 2, 3, 4, 5, 6, 7]).ffill()
# a
# 0 0.0
# 1 1.0
# 2 2.0
# 3 3.0
# 4 4.0
# 5 4.0
# 6 4.0
# 7 4.0
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278,
12205,
13,
2176,
29889,
276,
2248,
4197,
29900,
29892,
29871,
29896,
29892,
29871,
29906,
29892,
29871,
29941,
29892,
29871,
29946,
29892,
29871,
29945,
29892,
29871,
29953,
29892,
29871,
29955,
14664,
600,
453,
580,
13,
13,
29937,
418,
263,
13,
29937,
29871,
29900,
259,
29900,
29889,
29900,
13,
29937,
29871,
29896,
259,
29896,
29889,
29900,
13,
29937,
29871,
29906,
259,
29906,
29889,
29900,
13,
29937,
29871,
29941,
259,
29941,
29889,
29900,
13,
29937,
29871,
29946,
259,
29946,
29889,
29900,
13,
29937,
29871,
29945,
259,
29946,
29889,
29900,
13,
29937,
29871,
29953,
259,
29946,
29889,
29900,
13,
29937,
29871,
29955,
259,
29946,
29889,
29900,
13,
2
] |
BOJ_Solved/BOJ-19698.py | CodingLeeSeungHoon/Python_Algorithm_TeamNote | 7 | 13701 | """
백준 19698번 : 헛간 청약
"""
N, W, H, L = map(int, input().split())
print(min(W//L * H//L, N)) | [
1,
9995,
13,
31989,
239,
167,
131,
29871,
29896,
29929,
29953,
29929,
29947,
238,
181,
139,
584,
29871,
240,
154,
158,
237,
179,
135,
29871,
239,
181,
176,
239,
152,
192,
13,
15945,
29908,
13,
13,
29940,
29892,
399,
29892,
379,
29892,
365,
353,
2910,
29898,
524,
29892,
1881,
2141,
5451,
3101,
13,
2158,
29898,
1195,
29898,
29956,
458,
29931,
334,
379,
458,
29931,
29892,
405,
876,
2
] |
src/transformers/models/bert/modeling_flax_bert.py | manuelciosici/transformers | 8,028 | 103049 | # coding=utf-8
# Copyright 2021 The Google Flax Team Authors and The HuggingFace Inc. team.
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
from typing import Callable, Optional, Tuple
import numpy as np
import flax
import flax.linen as nn
import jax
import jax.numpy as jnp
from flax.core.frozen_dict import FrozenDict, freeze, unfreeze
from flax.linen import combine_masks, make_causal_mask
from flax.linen.attention import dot_product_attention_weights
from flax.traverse_util import flatten_dict, unflatten_dict
from jax import lax
from ...modeling_flax_outputs import (
FlaxBaseModelOutputWithPastAndCrossAttentions,
FlaxBaseModelOutputWithPooling,
FlaxBaseModelOutputWithPoolingAndCrossAttentions,
FlaxCausalLMOutputWithCrossAttentions,
FlaxMaskedLMOutput,
FlaxMultipleChoiceModelOutput,
FlaxNextSentencePredictorOutput,
FlaxQuestionAnsweringModelOutput,
FlaxSequenceClassifierOutput,
FlaxTokenClassifierOutput,
)
from ...modeling_flax_utils import (
ACT2FN,
FlaxPreTrainedModel,
append_call_sample_docstring,
append_replace_return_docstrings,
overwrite_call_docstring,
)
from ...utils import ModelOutput, add_start_docstrings, add_start_docstrings_to_model_forward, logging
from .configuration_bert import BertConfig
logger = logging.get_logger(__name__)
_CHECKPOINT_FOR_DOC = "bert-base-uncased"
_CONFIG_FOR_DOC = "BertConfig"
_TOKENIZER_FOR_DOC = "BertTokenizer"
@flax.struct.dataclass
class FlaxBertForPreTrainingOutput(ModelOutput):
"""
Output type of [`BertForPreTraining`].
Args:
prediction_logits (`jnp.ndarray` of shape `(batch_size, sequence_length, config.vocab_size)`):
Prediction scores of the language modeling head (scores for each vocabulary token before SoftMax).
seq_relationship_logits (`jnp.ndarray` of shape `(batch_size, 2)`):
Prediction scores of the next sequence prediction (classification) head (scores of True/False continuation
before SoftMax).
hidden_states (`tuple(jnp.ndarray)`, *optional*, returned when `output_hidden_states=True` is passed or when `config.output_hidden_states=True`):
Tuple of `jnp.ndarray` (one for the output of the embeddings + one for the output of each layer) of shape
`(batch_size, sequence_length, hidden_size)`.
Hidden-states of the model at the output of each layer plus the initial embedding outputs.
attentions (`tuple(jnp.ndarray)`, *optional*, returned when `output_attentions=True` is passed or when `config.output_attentions=True`):
Tuple of `jnp.ndarray` (one for each layer) of shape `(batch_size, num_heads, sequence_length,
sequence_length)`.
Attentions weights after the attention softmax, used to compute the weighted average in the self-attention
heads.
"""
prediction_logits: jnp.ndarray = None
seq_relationship_logits: jnp.ndarray = None
hidden_states: Optional[Tuple[jnp.ndarray]] = None
attentions: Optional[Tuple[jnp.ndarray]] = None
BERT_START_DOCSTRING = r"""
This model inherits from [`FlaxPreTrainedModel`]. Check the superclass documentation for the generic methods the
library implements for all its model (such as downloading, saving and converting weights from PyTorch models)
This model is also a Flax Linen [flax.linen.Module](https://flax.readthedocs.io/en/latest/flax.linen.html#module)
subclass. Use it as a regular Flax linen Module and refer to the Flax documentation for all matter related to
general usage and behavior.
Finally, this model supports inherent JAX features such as:
- [Just-In-Time (JIT) compilation](https://jax.readthedocs.io/en/latest/jax.html#just-in-time-compilation-jit)
- [Automatic Differentiation](https://jax.readthedocs.io/en/latest/jax.html#automatic-differentiation)
- [Vectorization](https://jax.readthedocs.io/en/latest/jax.html#vectorization-vmap)
- [Parallelization](https://jax.readthedocs.io/en/latest/jax.html#parallelization-pmap)
Parameters:
config ([`BertConfig`]): Model configuration class with all the parameters of the model.
Initializing with a config file does not load the weights associated with the model, only the
configuration. Check out the [`~FlaxPreTrainedModel.from_pretrained`] method to load the model weights.
dtype (`jax.numpy.dtype`, *optional*, defaults to `jax.numpy.float32`):
The data type of the computation. Can be one of `jax.numpy.float32`, `jax.numpy.float16` (on GPUs) and
`jax.numpy.bfloat16` (on TPUs).
This can be used to enable mixed-precision training or half-precision inference on GPUs or TPUs. If
specified all the computation will be performed with the given `dtype`.
**Note that this only specifies the dtype of the computation and does not influence the dtype of model
parameters.**
If you wish to change the dtype of the model parameters, see [`~FlaxPreTrainedModel.to_fp16`] and
[`~FlaxPreTrainedModel.to_bf16`].
dtype (`jax.numpy.dtype`, *optional*, defaults to `jax.numpy.float32`):
The data type of the computation. Can be one of `jax.numpy.float32`, `jax.numpy.float16` (on GPUs) and
`jax.numpy.bfloat16` (on TPUs).
This can be used to enable mixed-precision training or half-precision inference on GPUs or TPUs. If
specified all the computation will be performed with the given `dtype`.
**Note that this only specifies the dtype of the computation and does not influence the dtype of model
parameters.**
If you wish to change the dtype of the model parameters, see [`~FlaxPreTrainedModel.to_fp16`] and
[`~FlaxPreTrainedModel.to_bf16`].
"""
BERT_INPUTS_DOCSTRING = r"""
Args:
input_ids (`numpy.ndarray` of shape `({0})`):
Indices of input sequence tokens in the vocabulary.
Indices can be obtained using [`BertTokenizer`]. See [`PreTrainedTokenizer.encode`] and
[`PreTrainedTokenizer.__call__`] for details.
[What are input IDs?](../glossary#input-ids)
attention_mask (`numpy.ndarray` of shape `({0})`, *optional*):
Mask to avoid performing attention on padding token indices. Mask values selected in `[0, 1]`:
- 1 for tokens that are **not masked**,
- 0 for tokens that are **masked**.
[What are attention masks?](../glossary#attention-mask)
token_type_ids (`numpy.ndarray` of shape `({0})`, *optional*):
Segment token indices to indicate first and second portions of the inputs. Indices are selected in `[0,
1]`:
- 0 corresponds to a *sentence A* token,
- 1 corresponds to a *sentence B* token.
[What are token type IDs?](../glossary#token-type-ids)
position_ids (`numpy.ndarray` of shape `({0})`, *optional*):
Indices of positions of each input sequence tokens in the position embeddings. Selected in the range `[0,
config.max_position_embeddings - 1]`.
head_mask (`numpy.ndarray` of shape `({0})`, `optional):
Mask to nullify selected heads of the attention modules. Mask values selected in `[0, 1]`:
- 1 indicates the head is **not masked**,
- 0 indicates the head is **masked**.
return_dict (`bool`, *optional*):
Whether or not to return a [`~utils.ModelOutput`] instead of a plain tuple.
"""
class FlaxBertEmbeddings(nn.Module):
"""Construct the embeddings from word, position and token_type embeddings."""
config: BertConfig
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.word_embeddings = nn.Embed(
self.config.vocab_size,
self.config.hidden_size,
embedding_init=jax.nn.initializers.normal(stddev=self.config.initializer_range),
)
self.position_embeddings = nn.Embed(
self.config.max_position_embeddings,
self.config.hidden_size,
embedding_init=jax.nn.initializers.normal(stddev=self.config.initializer_range),
)
self.token_type_embeddings = nn.Embed(
self.config.type_vocab_size,
self.config.hidden_size,
embedding_init=jax.nn.initializers.normal(stddev=self.config.initializer_range),
)
self.LayerNorm = nn.LayerNorm(epsilon=self.config.layer_norm_eps, dtype=self.dtype)
self.dropout = nn.Dropout(rate=self.config.hidden_dropout_prob)
def __call__(self, input_ids, token_type_ids, position_ids, attention_mask, deterministic: bool = True):
# Embed
inputs_embeds = self.word_embeddings(input_ids.astype("i4"))
position_embeds = self.position_embeddings(position_ids.astype("i4"))
token_type_embeddings = self.token_type_embeddings(token_type_ids.astype("i4"))
# Sum all embeddings
hidden_states = inputs_embeds + token_type_embeddings + position_embeds
# Layer Norm
hidden_states = self.LayerNorm(hidden_states)
hidden_states = self.dropout(hidden_states, deterministic=deterministic)
return hidden_states
class FlaxBertSelfAttention(nn.Module):
config: BertConfig
causal: bool = False
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.head_dim = self.config.hidden_size // self.config.num_attention_heads
if self.config.hidden_size % self.config.num_attention_heads != 0:
raise ValueError(
"`config.hidden_size`: {self.config.hidden_size} has to be a multiple of `config.num_attention_heads`\
: {self.config.num_attention_heads}"
)
self.query = nn.Dense(
self.config.hidden_size,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(self.config.initializer_range),
)
self.key = nn.Dense(
self.config.hidden_size,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(self.config.initializer_range),
)
self.value = nn.Dense(
self.config.hidden_size,
dtype=self.dtype,
kernel_init=jax.nn.initializers.normal(self.config.initializer_range),
)
if self.causal:
self.causal_mask = make_causal_mask(
jnp.ones((1, self.config.max_position_embeddings), dtype="bool"), dtype="bool"
)
def _split_heads(self, hidden_states):
return hidden_states.reshape(hidden_states.shape[:2] + (self.config.num_attention_heads, self.head_dim))
def _merge_heads(self, hidden_states):
return hidden_states.reshape(hidden_states.shape[:2] + (self.config.hidden_size,))
@nn.compact
# Copied from transformers.models.bart.modeling_flax_bart.FlaxBartAttention._concatenate_to_cache
def _concatenate_to_cache(self, key, value, query, attention_mask):
"""
This function takes projected key, value states from a single input token and concatenates the states to cached
states from previous steps. This function is slighly adapted from the official Flax repository:
https://github.com/google/flax/blob/491ce18759622506588784b4fca0e4bf05f8c8cd/flax/linen/attention.py#L252
"""
# detect if we're initializing by absence of existing cache data.
is_initialized = self.has_variable("cache", "cached_key")
cached_key = self.variable("cache", "cached_key", jnp.zeros, key.shape, key.dtype)
cached_value = self.variable("cache", "cached_value", jnp.zeros, value.shape, value.dtype)
cache_index = self.variable("cache", "cache_index", lambda: jnp.array(0, dtype=jnp.int32))
if is_initialized:
*batch_dims, max_length, num_heads, depth_per_head = cached_key.value.shape
# update key, value caches with our new 1d spatial slices
cur_index = cache_index.value
indices = (0,) * len(batch_dims) + (cur_index, 0, 0)
key = lax.dynamic_update_slice(cached_key.value, key, indices)
value = lax.dynamic_update_slice(cached_value.value, value, indices)
cached_key.value = key
cached_value.value = value
num_updated_cache_vectors = query.shape[1]
cache_index.value = cache_index.value + num_updated_cache_vectors
# causal mask for cached decoder self-attention: our single query position should only attend to those key positions that have already been generated and cached, not the remaining zero elements.
pad_mask = jnp.broadcast_to(
jnp.arange(max_length) < cur_index + num_updated_cache_vectors,
tuple(batch_dims) + (1, num_updated_cache_vectors, max_length),
)
attention_mask = combine_masks(pad_mask, attention_mask)
return key, value, attention_mask
def __call__(
self,
hidden_states,
attention_mask,
layer_head_mask,
key_value_states: Optional[jnp.array] = None,
init_cache: bool = False,
deterministic=True,
output_attentions: bool = False,
):
# if key_value_states are provided this layer is used as a cross-attention layer
# for the decoder
is_cross_attention = key_value_states is not None
batch_size = hidden_states.shape[0]
# get query proj
query_states = self.query(hidden_states)
# get key, value proj
if is_cross_attention:
# cross_attentions
key_states = self.key(key_value_states)
value_states = self.value(key_value_states)
else:
# self_attention
key_states = self.key(hidden_states)
value_states = self.value(hidden_states)
query_states = self._split_heads(query_states)
key_states = self._split_heads(key_states)
value_states = self._split_heads(value_states)
# handle cache prepare causal attention mask
if self.causal:
query_length, key_length = query_states.shape[1], key_states.shape[1]
if self.has_variable("cache", "cached_key"):
mask_shift = self.variables["cache"]["cache_index"]
max_decoder_length = self.variables["cache"]["cached_key"].shape[1]
causal_mask = lax.dynamic_slice(
self.causal_mask, (0, 0, mask_shift, 0), (1, 1, query_length, max_decoder_length)
)
else:
causal_mask = self.causal_mask[:, :, :query_length, :key_length]
causal_mask = jnp.broadcast_to(causal_mask, (batch_size,) + causal_mask.shape[1:])
# combine masks if needed
if attention_mask is not None and self.causal:
attention_mask = jnp.broadcast_to(jnp.expand_dims(attention_mask, axis=(-3, -2)), causal_mask.shape)
attention_mask = combine_masks(attention_mask, causal_mask)
elif self.causal:
attention_mask = causal_mask
elif attention_mask is not None:
attention_mask = jnp.expand_dims(attention_mask, axis=(-3, -2))
# During fast autoregressive decoding, we feed one position at a time,
# and cache the keys and values step by step.
if self.causal and (self.has_variable("cache", "cached_key") or init_cache):
key_states, value_states, attention_mask = self._concatenate_to_cache(
key_states, value_states, query_states, attention_mask
)
# Convert the boolean attention mask to an attention bias.
if attention_mask is not None:
# attention mask in the form of attention bias
attention_bias = lax.select(
attention_mask > 0,
jnp.full(attention_mask.shape, 0.0).astype(self.dtype),
jnp.full(attention_mask.shape, -1e10).astype(self.dtype),
)
else:
attention_bias = None
dropout_rng = None
if not deterministic and self.config.attention_probs_dropout_prob > 0.0:
dropout_rng = self.make_rng("dropout")
attn_weights = dot_product_attention_weights(
query_states,
key_states,
bias=attention_bias,
dropout_rng=dropout_rng,
dropout_rate=self.config.attention_probs_dropout_prob,
broadcast_dropout=True,
deterministic=deterministic,
dtype=self.dtype,
precision=None,
)
# Mask heads if we want to
if layer_head_mask is not None:
attn_weights = jnp.einsum("...hqk,h->...hqk", attn_weights, layer_head_mask)
attn_output = jnp.einsum("...hqk,...khd->...qhd", attn_weights, value_states)
attn_output = attn_output.reshape(attn_output.shape[:2] + (-1,))
outputs = (attn_output, attn_weights) if output_attentions else (attn_output,)
return outputs
class FlaxBertSelfOutput(nn.Module):
config: BertConfig
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.dense = nn.Dense(
self.config.hidden_size,
kernel_init=jax.nn.initializers.normal(self.config.initializer_range),
dtype=self.dtype,
)
self.LayerNorm = nn.LayerNorm(epsilon=self.config.layer_norm_eps, dtype=self.dtype)
self.dropout = nn.Dropout(rate=self.config.hidden_dropout_prob)
def __call__(self, hidden_states, input_tensor, deterministic: bool = True):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states, deterministic=deterministic)
hidden_states = self.LayerNorm(hidden_states + input_tensor)
return hidden_states
class FlaxBertAttention(nn.Module):
config: BertConfig
causal: bool = False
dtype: jnp.dtype = jnp.float32
def setup(self):
self.self = FlaxBertSelfAttention(self.config, causal=self.causal, dtype=self.dtype)
self.output = FlaxBertSelfOutput(self.config, dtype=self.dtype)
def __call__(
self,
hidden_states,
attention_mask,
layer_head_mask,
key_value_states=None,
init_cache=False,
deterministic=True,
output_attentions: bool = False,
):
# Attention mask comes in as attention_mask.shape == (*batch_sizes, kv_length)
# FLAX expects: attention_mask.shape == (*batch_sizes, 1, 1, kv_length) such that it is broadcastable
# with attn_weights.shape == (*batch_sizes, num_heads, q_length, kv_length)
attn_outputs = self.self(
hidden_states,
attention_mask,
layer_head_mask=layer_head_mask,
key_value_states=key_value_states,
init_cache=init_cache,
deterministic=deterministic,
output_attentions=output_attentions,
)
attn_output = attn_outputs[0]
hidden_states = self.output(attn_output, hidden_states, deterministic=deterministic)
outputs = (hidden_states,)
if output_attentions:
outputs += (attn_outputs[1],)
return outputs
class FlaxBertIntermediate(nn.Module):
config: BertConfig
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.dense = nn.Dense(
self.config.intermediate_size,
kernel_init=jax.nn.initializers.normal(self.config.initializer_range),
dtype=self.dtype,
)
self.activation = ACT2FN[self.config.hidden_act]
def __call__(self, hidden_states):
hidden_states = self.dense(hidden_states)
hidden_states = self.activation(hidden_states)
return hidden_states
class FlaxBertOutput(nn.Module):
config: BertConfig
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.dense = nn.Dense(
self.config.hidden_size,
kernel_init=jax.nn.initializers.normal(self.config.initializer_range),
dtype=self.dtype,
)
self.dropout = nn.Dropout(rate=self.config.hidden_dropout_prob)
self.LayerNorm = nn.LayerNorm(epsilon=self.config.layer_norm_eps, dtype=self.dtype)
def __call__(self, hidden_states, attention_output, deterministic: bool = True):
hidden_states = self.dense(hidden_states)
hidden_states = self.dropout(hidden_states, deterministic=deterministic)
hidden_states = self.LayerNorm(hidden_states + attention_output)
return hidden_states
class FlaxBertLayer(nn.Module):
config: BertConfig
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.attention = FlaxBertAttention(self.config, causal=self.config.is_decoder, dtype=self.dtype)
self.intermediate = FlaxBertIntermediate(self.config, dtype=self.dtype)
self.output = FlaxBertOutput(self.config, dtype=self.dtype)
if self.config.add_cross_attention:
self.crossattention = FlaxBertAttention(self.config, causal=False, dtype=self.dtype)
def __call__(
self,
hidden_states,
attention_mask,
layer_head_mask,
encoder_hidden_states: Optional[jnp.ndarray] = None,
encoder_attention_mask: Optional[jnp.ndarray] = None,
init_cache: bool = False,
deterministic: bool = True,
output_attentions: bool = False,
):
# Self Attention
attention_outputs = self.attention(
hidden_states,
attention_mask,
layer_head_mask=layer_head_mask,
init_cache=init_cache,
deterministic=deterministic,
output_attentions=output_attentions,
)
attention_output = attention_outputs[0]
# Cross-Attention Block
if encoder_hidden_states is not None:
cross_attention_outputs = self.crossattention(
attention_output,
attention_mask=encoder_attention_mask,
layer_head_mask=layer_head_mask,
key_value_states=encoder_hidden_states,
deterministic=deterministic,
output_attentions=output_attentions,
)
attention_output = cross_attention_outputs[0]
hidden_states = self.intermediate(attention_output)
hidden_states = self.output(hidden_states, attention_output, deterministic=deterministic)
outputs = (hidden_states,)
if output_attentions:
outputs += (attention_outputs[1],)
if encoder_hidden_states is not None:
outputs += (cross_attention_outputs[1],)
return outputs
class FlaxBertLayerCollection(nn.Module):
config: BertConfig
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.layers = [
FlaxBertLayer(self.config, name=str(i), dtype=self.dtype) for i in range(self.config.num_hidden_layers)
]
def __call__(
self,
hidden_states,
attention_mask,
head_mask,
encoder_hidden_states: Optional[jnp.ndarray] = None,
encoder_attention_mask: Optional[jnp.ndarray] = None,
init_cache: bool = False,
deterministic: bool = True,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
all_attentions = () if output_attentions else None
all_hidden_states = () if output_hidden_states else None
all_cross_attentions = () if (output_attentions and encoder_hidden_states is not None) else None
# Check if head_mask has a correct number of layers specified if desired
if head_mask is not None:
if head_mask.shape[0] != (len(self.layers)):
raise ValueError(
f"The head_mask should be specified for {len(self.layers)} layers, but it is for \
{head_mask.shape[0]}."
)
for i, layer in enumerate(self.layers):
if output_hidden_states:
all_hidden_states += (hidden_states,)
layer_outputs = layer(
hidden_states,
attention_mask,
layer_head_mask=head_mask[i] if head_mask is not None else None,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
init_cache=init_cache,
deterministic=deterministic,
output_attentions=output_attentions,
)
hidden_states = layer_outputs[0]
if output_attentions:
all_attentions += (layer_outputs[1],)
if encoder_hidden_states is not None:
all_cross_attentions += (layer_outputs[2],)
if output_hidden_states:
all_hidden_states += (hidden_states,)
outputs = (hidden_states,)
if not return_dict:
return tuple(v for v in outputs if v is not None)
return FlaxBaseModelOutputWithPastAndCrossAttentions(
last_hidden_state=hidden_states,
hidden_states=all_hidden_states,
attentions=all_attentions,
cross_attentions=all_cross_attentions,
)
class FlaxBertEncoder(nn.Module):
config: BertConfig
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.layer = FlaxBertLayerCollection(self.config, dtype=self.dtype)
def __call__(
self,
hidden_states,
attention_mask,
head_mask,
encoder_hidden_states: Optional[jnp.ndarray] = None,
encoder_attention_mask: Optional[jnp.ndarray] = None,
init_cache: bool = False,
deterministic: bool = True,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
return self.layer(
hidden_states,
attention_mask,
head_mask=head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
init_cache=init_cache,
deterministic=deterministic,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
class FlaxBertPooler(nn.Module):
config: BertConfig
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
def setup(self):
self.dense = nn.Dense(
self.config.hidden_size,
kernel_init=jax.nn.initializers.normal(self.config.initializer_range),
dtype=self.dtype,
)
def __call__(self, hidden_states):
cls_hidden_state = hidden_states[:, 0]
cls_hidden_state = self.dense(cls_hidden_state)
return nn.tanh(cls_hidden_state)
class FlaxBertPredictionHeadTransform(nn.Module):
config: BertConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.dense = nn.Dense(self.config.hidden_size, dtype=self.dtype)
self.activation = ACT2FN[self.config.hidden_act]
self.LayerNorm = nn.LayerNorm(epsilon=self.config.layer_norm_eps, dtype=self.dtype)
def __call__(self, hidden_states):
hidden_states = self.dense(hidden_states)
hidden_states = self.activation(hidden_states)
return self.LayerNorm(hidden_states)
class FlaxBertLMPredictionHead(nn.Module):
config: BertConfig
dtype: jnp.dtype = jnp.float32
bias_init: Callable[..., np.ndarray] = jax.nn.initializers.zeros
def setup(self):
self.transform = FlaxBertPredictionHeadTransform(self.config, dtype=self.dtype)
self.decoder = nn.Dense(self.config.vocab_size, dtype=self.dtype, use_bias=False)
self.bias = self.param("bias", self.bias_init, (self.config.vocab_size,))
def __call__(self, hidden_states, shared_embedding=None):
hidden_states = self.transform(hidden_states)
if shared_embedding is not None:
hidden_states = self.decoder.apply({"params": {"kernel": shared_embedding.T}}, hidden_states)
else:
hidden_states = self.decoder(hidden_states)
bias = jnp.asarray(self.bias, self.dtype)
hidden_states += bias
return hidden_states
class FlaxBertOnlyMLMHead(nn.Module):
config: BertConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.predictions = FlaxBertLMPredictionHead(self.config, dtype=self.dtype)
def __call__(self, hidden_states, shared_embedding=None):
hidden_states = self.predictions(hidden_states, shared_embedding=shared_embedding)
return hidden_states
class FlaxBertOnlyNSPHead(nn.Module):
dtype: jnp.dtype = jnp.float32
def setup(self):
self.seq_relationship = nn.Dense(2, dtype=self.dtype)
def __call__(self, pooled_output):
return self.seq_relationship(pooled_output)
class FlaxBertPreTrainingHeads(nn.Module):
config: BertConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.predictions = FlaxBertLMPredictionHead(self.config, dtype=self.dtype)
self.seq_relationship = nn.Dense(2, dtype=self.dtype)
def __call__(self, hidden_states, pooled_output, shared_embedding=None):
prediction_scores = self.predictions(hidden_states, shared_embedding=shared_embedding)
seq_relationship_score = self.seq_relationship(pooled_output)
return prediction_scores, seq_relationship_score
class FlaxBertPreTrainedModel(FlaxPreTrainedModel):
"""
An abstract class to handle weights initialization and a simple interface for downloading and loading pretrained
models.
"""
config_class = BertConfig
base_model_prefix = "bert"
module_class: nn.Module = None
def __init__(
self,
config: BertConfig,
input_shape: Tuple = (1, 1),
seed: int = 0,
dtype: jnp.dtype = jnp.float32,
_do_init: bool = True,
**kwargs
):
module = self.module_class(config=config, dtype=dtype, **kwargs)
super().__init__(config, module, input_shape=input_shape, seed=seed, dtype=dtype, _do_init=_do_init)
def init_weights(self, rng: jax.random.PRNGKey, input_shape: Tuple, params: FrozenDict = None) -> FrozenDict:
# init input tensors
input_ids = jnp.zeros(input_shape, dtype="i4")
token_type_ids = jnp.zeros_like(input_ids)
position_ids = jnp.broadcast_to(jnp.arange(jnp.atleast_2d(input_ids).shape[-1]), input_shape)
attention_mask = jnp.ones_like(input_ids)
head_mask = jnp.ones((self.config.num_hidden_layers, self.config.num_attention_heads))
params_rng, dropout_rng = jax.random.split(rng)
rngs = {"params": params_rng, "dropout": dropout_rng}
if self.config.add_cross_attention:
encoder_hidden_states = jnp.zeros(input_shape + (self.config.hidden_size,))
encoder_attention_mask = attention_mask
module_init_outputs = self.module.init(
rngs,
input_ids,
attention_mask,
token_type_ids,
position_ids,
head_mask,
encoder_hidden_states,
encoder_attention_mask,
return_dict=False,
)
else:
module_init_outputs = self.module.init(
rngs, input_ids, attention_mask, token_type_ids, position_ids, head_mask, return_dict=False
)
random_params = module_init_outputs["params"]
if params is not None:
random_params = flatten_dict(unfreeze(random_params))
params = flatten_dict(unfreeze(params))
for missing_key in self._missing_keys:
params[missing_key] = random_params[missing_key]
self._missing_keys = set()
return freeze(unflatten_dict(params))
else:
return random_params
# Copied from transformers.models.bart.modeling_flax_bart.FlaxBartDecoderPreTrainedModel.init_cache
def init_cache(self, batch_size, max_length):
r"""
Args:
batch_size (`int`):
batch_size used for fast auto-regressive decoding. Defines the batch size of the initialized cache.
max_length (`int`):
maximum possible length for auto-regressive decoding. Defines the sequence length of the initialized
cache.
"""
# init input variables to retrieve cache
input_ids = jnp.ones((batch_size, max_length), dtype="i4")
attention_mask = jnp.ones_like(input_ids, dtype="i4")
position_ids = jnp.broadcast_to(jnp.arange(jnp.atleast_2d(input_ids).shape[-1]), input_ids.shape)
init_variables = self.module.init(
jax.random.PRNGKey(0), input_ids, attention_mask, position_ids, return_dict=False, init_cache=True
)
return unfreeze(init_variables["cache"])
@add_start_docstrings_to_model_forward(BERT_INPUTS_DOCSTRING.format("batch_size, sequence_length"))
def __call__(
self,
input_ids,
attention_mask=None,
token_type_ids=None,
position_ids=None,
head_mask=None,
encoder_hidden_states=None,
encoder_attention_mask=None,
params: dict = None,
dropout_rng: jax.random.PRNGKey = None,
train: bool = False,
output_attentions: Optional[bool] = None,
output_hidden_states: Optional[bool] = None,
return_dict: Optional[bool] = None,
past_key_values: dict = None,
):
output_attentions = output_attentions if output_attentions is not None else self.config.output_attentions
output_hidden_states = (
output_hidden_states if output_hidden_states is not None else self.config.output_hidden_states
)
return_dict = return_dict if return_dict is not None else self.config.return_dict
# init input tensors if not passed
if token_type_ids is None:
token_type_ids = jnp.zeros_like(input_ids)
if position_ids is None:
position_ids = jnp.broadcast_to(jnp.arange(jnp.atleast_2d(input_ids).shape[-1]), input_ids.shape)
if attention_mask is None:
attention_mask = jnp.ones_like(input_ids)
if head_mask is None:
head_mask = jnp.ones((self.config.num_hidden_layers, self.config.num_attention_heads))
# Handle any PRNG if needed
rngs = {}
if dropout_rng is not None:
rngs["dropout"] = dropout_rng
inputs = {"params": params or self.params}
if self.config.add_cross_attention:
# if past_key_values are passed then cache is already initialized a private flag init_cache has to be passed
# down to ensure cache is used. It has to be made sure that cache is marked as mutable so that it can be
# changed by FlaxBertAttention module
if past_key_values:
inputs["cache"] = past_key_values
mutable = ["cache"]
else:
mutable = False
outputs = self.module.apply(
inputs,
jnp.array(input_ids, dtype="i4"),
jnp.array(attention_mask, dtype="i4"),
token_type_ids=jnp.array(token_type_ids, dtype="i4"),
position_ids=jnp.array(position_ids, dtype="i4"),
head_mask=jnp.array(head_mask, dtype="i4"),
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
deterministic=not train,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
rngs=rngs,
mutable=mutable,
)
# add updated cache to model output
if past_key_values is not None and return_dict:
outputs, past_key_values = outputs
outputs["past_key_values"] = unfreeze(past_key_values["cache"])
return outputs
elif past_key_values is not None and not return_dict:
outputs, past_key_values = outputs
outputs = outputs[:1] + (unfreeze(past_key_values["cache"]),) + outputs[1:]
else:
outputs = self.module.apply(
inputs,
jnp.array(input_ids, dtype="i4"),
jnp.array(attention_mask, dtype="i4"),
token_type_ids=jnp.array(token_type_ids, dtype="i4"),
position_ids=jnp.array(position_ids, dtype="i4"),
head_mask=jnp.array(head_mask, dtype="i4"),
deterministic=not train,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
rngs=rngs,
)
return outputs
class FlaxBertModule(nn.Module):
config: BertConfig
dtype: jnp.dtype = jnp.float32 # the dtype of the computation
add_pooling_layer: bool = True
def setup(self):
self.embeddings = FlaxBertEmbeddings(self.config, dtype=self.dtype)
self.encoder = FlaxBertEncoder(self.config, dtype=self.dtype)
self.pooler = FlaxBertPooler(self.config, dtype=self.dtype)
def __call__(
self,
input_ids,
attention_mask,
token_type_ids: Optional[jnp.ndarray] = None,
position_ids: Optional[jnp.ndarray] = None,
head_mask: Optional[jnp.ndarray] = None,
encoder_hidden_states: Optional[jnp.ndarray] = None,
encoder_attention_mask: Optional[jnp.ndarray] = None,
init_cache: bool = False,
deterministic: bool = True,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
# make sure `token_type_ids` is correctly initialized when not passed
if token_type_ids is None:
token_type_ids = jnp.zeros_like(input_ids)
# make sure `position_ids` is correctly initialized when not passed
if position_ids is None:
position_ids = jnp.broadcast_to(jnp.arange(jnp.atleast_2d(input_ids).shape[-1]), input_ids.shape)
hidden_states = self.embeddings(
input_ids, token_type_ids, position_ids, attention_mask, deterministic=deterministic
)
outputs = self.encoder(
hidden_states,
attention_mask,
head_mask=head_mask,
deterministic=deterministic,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
init_cache=init_cache,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = outputs[0]
pooled = self.pooler(hidden_states) if self.add_pooling_layer else None
if not return_dict:
# if pooled is None, don't return it
if pooled is None:
return (hidden_states,) + outputs[1:]
return (hidden_states, pooled) + outputs[1:]
return FlaxBaseModelOutputWithPoolingAndCrossAttentions(
last_hidden_state=hidden_states,
pooler_output=pooled,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
cross_attentions=outputs.cross_attentions,
)
@add_start_docstrings(
"The bare Bert Model transformer outputting raw hidden-states without any specific head on top.",
BERT_START_DOCSTRING,
)
class FlaxBertModel(FlaxBertPreTrainedModel):
module_class = FlaxBertModule
append_call_sample_docstring(
FlaxBertModel, _TOKENIZER_FOR_DOC, _CHECKPOINT_FOR_DOC, FlaxBaseModelOutputWithPooling, _CONFIG_FOR_DOC
)
class FlaxBertForPreTrainingModule(nn.Module):
config: BertConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.bert = FlaxBertModule(config=self.config, dtype=self.dtype)
self.cls = FlaxBertPreTrainingHeads(config=self.config, dtype=self.dtype)
def __call__(
self,
input_ids,
attention_mask,
token_type_ids,
position_ids,
head_mask,
deterministic: bool = True,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
# Model
outputs = self.bert(
input_ids,
attention_mask,
token_type_ids,
position_ids,
head_mask,
deterministic=deterministic,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
if self.config.tie_word_embeddings:
shared_embedding = self.bert.variables["params"]["embeddings"]["word_embeddings"]["embedding"]
else:
shared_embedding = None
hidden_states = outputs[0]
pooled_output = outputs[1]
prediction_scores, seq_relationship_score = self.cls(
hidden_states, pooled_output, shared_embedding=shared_embedding
)
if not return_dict:
return (prediction_scores, seq_relationship_score) + outputs[2:]
return FlaxBertForPreTrainingOutput(
prediction_logits=prediction_scores,
seq_relationship_logits=seq_relationship_score,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
Bert Model with two heads on top as done during the pretraining: a `masked language modeling` head and a `next
sentence prediction (classification)` head.
""",
BERT_START_DOCSTRING,
)
class FlaxBertForPreTraining(FlaxBertPreTrainedModel):
module_class = FlaxBertForPreTrainingModule
FLAX_BERT_FOR_PRETRAINING_DOCSTRING = """
Returns:
Example:
```python
>>> from transformers import BertTokenizer, FlaxBertForPreTraining
>>> tokenizer = BertTokenizer.from_pretrained("bert-base-uncased")
>>> model = FlaxBertForPreTraining.from_pretrained("bert-base-uncased")
>>> inputs = tokenizer("Hello, my dog is cute", return_tensors="np")
>>> outputs = model(**inputs)
>>> prediction_logits = outputs.prediction_logits
>>> seq_relationship_logits = outputs.seq_relationship_logits
```
"""
overwrite_call_docstring(
FlaxBertForPreTraining,
BERT_INPUTS_DOCSTRING.format("batch_size, sequence_length") + FLAX_BERT_FOR_PRETRAINING_DOCSTRING,
)
append_replace_return_docstrings(
FlaxBertForPreTraining, output_type=FlaxBertForPreTrainingOutput, config_class=_CONFIG_FOR_DOC
)
class FlaxBertForMaskedLMModule(nn.Module):
config: BertConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.bert = FlaxBertModule(config=self.config, add_pooling_layer=False, dtype=self.dtype)
self.cls = FlaxBertOnlyMLMHead(config=self.config, dtype=self.dtype)
def __call__(
self,
input_ids,
attention_mask,
token_type_ids,
position_ids,
head_mask,
deterministic: bool = True,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
# Model
outputs = self.bert(
input_ids,
attention_mask,
token_type_ids,
position_ids,
head_mask,
deterministic=deterministic,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = outputs[0]
if self.config.tie_word_embeddings:
shared_embedding = self.bert.variables["params"]["embeddings"]["word_embeddings"]["embedding"]
else:
shared_embedding = None
# Compute the prediction scores
logits = self.cls(hidden_states, shared_embedding=shared_embedding)
if not return_dict:
return (logits,) + outputs[1:]
return FlaxMaskedLMOutput(
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings("""Bert Model with a `language modeling` head on top.""", BERT_START_DOCSTRING)
class FlaxBertForMaskedLM(FlaxBertPreTrainedModel):
module_class = FlaxBertForMaskedLMModule
append_call_sample_docstring(
FlaxBertForMaskedLM, _TOKENIZER_FOR_DOC, _CHECKPOINT_FOR_DOC, FlaxMaskedLMOutput, _CONFIG_FOR_DOC
)
class FlaxBertForNextSentencePredictionModule(nn.Module):
config: BertConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.bert = FlaxBertModule(config=self.config, dtype=self.dtype)
self.cls = FlaxBertOnlyNSPHead(dtype=self.dtype)
def __call__(
self,
input_ids,
attention_mask,
token_type_ids,
position_ids,
head_mask,
deterministic: bool = True,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
return_dict = return_dict if return_dict is not None else self.config.return_dict
# Model
outputs = self.bert(
input_ids,
attention_mask,
token_type_ids,
position_ids,
head_mask,
deterministic=deterministic,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
pooled_output = outputs[1]
seq_relationship_scores = self.cls(pooled_output)
if not return_dict:
return (seq_relationship_scores,) + outputs[2:]
return FlaxNextSentencePredictorOutput(
logits=seq_relationship_scores,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""Bert Model with a `next sentence prediction (classification)` head on top.""",
BERT_START_DOCSTRING,
)
class FlaxBertForNextSentencePrediction(FlaxBertPreTrainedModel):
module_class = FlaxBertForNextSentencePredictionModule
FLAX_BERT_FOR_NEXT_SENT_PRED_DOCSTRING = """
Returns:
Example:
```python
>>> from transformers import BertTokenizer, FlaxBertForNextSentencePrediction
>>> tokenizer = BertTokenizer.from_pretrained("bert-base-uncased")
>>> model = FlaxBertForNextSentencePrediction.from_pretrained("bert-base-uncased")
>>> prompt = "In Italy, pizza served in formal settings, such as at a restaurant, is presented unsliced."
>>> next_sentence = "The sky is blue due to the shorter wavelength of blue light."
>>> encoding = tokenizer(prompt, next_sentence, return_tensors="jax")
>>> outputs = model(**encoding)
>>> logits = outputs.logits
>>> assert logits[0, 0] < logits[0, 1] # next sentence was random
```
"""
overwrite_call_docstring(
FlaxBertForNextSentencePrediction,
BERT_INPUTS_DOCSTRING.format("batch_size, sequence_length") + FLAX_BERT_FOR_NEXT_SENT_PRED_DOCSTRING,
)
append_replace_return_docstrings(
FlaxBertForNextSentencePrediction, output_type=FlaxNextSentencePredictorOutput, config_class=_CONFIG_FOR_DOC
)
class FlaxBertForSequenceClassificationModule(nn.Module):
config: BertConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.bert = FlaxBertModule(config=self.config, dtype=self.dtype)
classifier_dropout = (
self.config.classifier_dropout
if self.config.classifier_dropout is not None
else self.config.hidden_dropout_prob
)
self.dropout = nn.Dropout(rate=classifier_dropout)
self.classifier = nn.Dense(
self.config.num_labels,
dtype=self.dtype,
)
def __call__(
self,
input_ids,
attention_mask,
token_type_ids,
position_ids,
head_mask,
deterministic: bool = True,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
# Model
outputs = self.bert(
input_ids,
attention_mask,
token_type_ids,
position_ids,
head_mask,
deterministic=deterministic,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
pooled_output = outputs[1]
pooled_output = self.dropout(pooled_output, deterministic=deterministic)
logits = self.classifier(pooled_output)
if not return_dict:
return (logits,) + outputs[2:]
return FlaxSequenceClassifierOutput(
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
Bert Model transformer with a sequence classification/regression head on top (a linear layer on top of the pooled
output) e.g. for GLUE tasks.
""",
BERT_START_DOCSTRING,
)
class FlaxBertForSequenceClassification(FlaxBertPreTrainedModel):
module_class = FlaxBertForSequenceClassificationModule
append_call_sample_docstring(
FlaxBertForSequenceClassification,
_TOKENIZER_FOR_DOC,
_CHECKPOINT_FOR_DOC,
FlaxSequenceClassifierOutput,
_CONFIG_FOR_DOC,
)
class FlaxBertForMultipleChoiceModule(nn.Module):
config: BertConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.bert = FlaxBertModule(config=self.config, dtype=self.dtype)
self.dropout = nn.Dropout(rate=self.config.hidden_dropout_prob)
self.classifier = nn.Dense(1, dtype=self.dtype)
def __call__(
self,
input_ids,
attention_mask,
token_type_ids,
position_ids,
head_mask,
deterministic: bool = True,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
num_choices = input_ids.shape[1]
input_ids = input_ids.reshape(-1, input_ids.shape[-1]) if input_ids is not None else None
attention_mask = attention_mask.reshape(-1, attention_mask.shape[-1]) if attention_mask is not None else None
token_type_ids = token_type_ids.reshape(-1, token_type_ids.shape[-1]) if token_type_ids is not None else None
position_ids = position_ids.reshape(-1, position_ids.shape[-1]) if position_ids is not None else None
# Model
outputs = self.bert(
input_ids,
attention_mask,
token_type_ids,
position_ids,
head_mask,
deterministic=deterministic,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
pooled_output = outputs[1]
pooled_output = self.dropout(pooled_output, deterministic=deterministic)
logits = self.classifier(pooled_output)
reshaped_logits = logits.reshape(-1, num_choices)
if not return_dict:
return (reshaped_logits,) + outputs[2:]
return FlaxMultipleChoiceModelOutput(
logits=reshaped_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
Bert Model with a multiple choice classification head on top (a linear layer on top of the pooled output and a
softmax) e.g. for RocStories/SWAG tasks.
""",
BERT_START_DOCSTRING,
)
class FlaxBertForMultipleChoice(FlaxBertPreTrainedModel):
module_class = FlaxBertForMultipleChoiceModule
overwrite_call_docstring(
FlaxBertForMultipleChoice, BERT_INPUTS_DOCSTRING.format("batch_size, num_choices, sequence_length")
)
append_call_sample_docstring(
FlaxBertForMultipleChoice, _TOKENIZER_FOR_DOC, _CHECKPOINT_FOR_DOC, FlaxMultipleChoiceModelOutput, _CONFIG_FOR_DOC
)
class FlaxBertForTokenClassificationModule(nn.Module):
config: BertConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.bert = FlaxBertModule(config=self.config, dtype=self.dtype, add_pooling_layer=False)
classifier_dropout = (
self.config.classifier_dropout
if self.config.classifier_dropout is not None
else self.config.hidden_dropout_prob
)
self.dropout = nn.Dropout(rate=classifier_dropout)
self.classifier = nn.Dense(self.config.num_labels, dtype=self.dtype)
def __call__(
self,
input_ids,
attention_mask,
token_type_ids,
position_ids,
head_mask,
deterministic: bool = True,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
# Model
outputs = self.bert(
input_ids,
attention_mask,
token_type_ids,
position_ids,
head_mask,
deterministic=deterministic,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = outputs[0]
hidden_states = self.dropout(hidden_states, deterministic=deterministic)
logits = self.classifier(hidden_states)
if not return_dict:
return (logits,) + outputs[1:]
return FlaxTokenClassifierOutput(
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
Bert Model with a token classification head on top (a linear layer on top of the hidden-states output) e.g. for
Named-Entity-Recognition (NER) tasks.
""",
BERT_START_DOCSTRING,
)
class FlaxBertForTokenClassification(FlaxBertPreTrainedModel):
module_class = FlaxBertForTokenClassificationModule
append_call_sample_docstring(
FlaxBertForTokenClassification, _TOKENIZER_FOR_DOC, _CHECKPOINT_FOR_DOC, FlaxTokenClassifierOutput, _CONFIG_FOR_DOC
)
class FlaxBertForQuestionAnsweringModule(nn.Module):
config: BertConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.bert = FlaxBertModule(config=self.config, dtype=self.dtype, add_pooling_layer=False)
self.qa_outputs = nn.Dense(self.config.num_labels, dtype=self.dtype)
def __call__(
self,
input_ids,
attention_mask,
token_type_ids,
position_ids,
head_mask,
deterministic: bool = True,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
# Model
outputs = self.bert(
input_ids,
attention_mask,
token_type_ids,
position_ids,
head_mask,
deterministic=deterministic,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = outputs[0]
logits = self.qa_outputs(hidden_states)
start_logits, end_logits = logits.split(self.config.num_labels, axis=-1)
start_logits = start_logits.squeeze(-1)
end_logits = end_logits.squeeze(-1)
if not return_dict:
return (start_logits, end_logits) + outputs[1:]
return FlaxQuestionAnsweringModelOutput(
start_logits=start_logits,
end_logits=end_logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
)
@add_start_docstrings(
"""
Bert Model with a span classification head on top for extractive question-answering tasks like SQuAD (a linear
layers on top of the hidden-states output to compute `span start logits` and `span end logits`).
""",
BERT_START_DOCSTRING,
)
class FlaxBertForQuestionAnswering(FlaxBertPreTrainedModel):
module_class = FlaxBertForQuestionAnsweringModule
append_call_sample_docstring(
FlaxBertForQuestionAnswering,
_TOKENIZER_FOR_DOC,
_CHECKPOINT_FOR_DOC,
FlaxQuestionAnsweringModelOutput,
_CONFIG_FOR_DOC,
)
class FlaxBertForCausalLMModule(nn.Module):
config: BertConfig
dtype: jnp.dtype = jnp.float32
def setup(self):
self.bert = FlaxBertModule(config=self.config, add_pooling_layer=False, dtype=self.dtype)
self.cls = FlaxBertOnlyMLMHead(config=self.config, dtype=self.dtype)
def __call__(
self,
input_ids,
attention_mask,
position_ids,
token_type_ids: Optional[jnp.ndarray] = None,
head_mask: Optional[jnp.ndarray] = None,
encoder_hidden_states: Optional[jnp.ndarray] = None,
encoder_attention_mask: Optional[jnp.ndarray] = None,
init_cache: bool = False,
deterministic: bool = True,
output_attentions: bool = False,
output_hidden_states: bool = False,
return_dict: bool = True,
):
# Model
outputs = self.bert(
input_ids,
attention_mask,
token_type_ids,
position_ids,
head_mask,
encoder_hidden_states=encoder_hidden_states,
encoder_attention_mask=encoder_attention_mask,
init_cache=init_cache,
deterministic=deterministic,
output_attentions=output_attentions,
output_hidden_states=output_hidden_states,
return_dict=return_dict,
)
hidden_states = outputs[0]
if self.config.tie_word_embeddings:
shared_embedding = self.bert.variables["params"]["embeddings"]["word_embeddings"]["embedding"]
else:
shared_embedding = None
# Compute the prediction scores
logits = self.cls(hidden_states, shared_embedding=shared_embedding)
if not return_dict:
return (logits,) + outputs[1:]
return FlaxCausalLMOutputWithCrossAttentions(
logits=logits,
hidden_states=outputs.hidden_states,
attentions=outputs.attentions,
cross_attentions=outputs.cross_attentions,
)
@add_start_docstrings(
"""
Bert Model with a language modeling head on top (a linear layer on top of the hidden-states output) e.g for
autoregressive tasks.
""",
BERT_START_DOCSTRING,
)
class FlaxBertForCausalLM(FlaxBertPreTrainedModel):
module_class = FlaxBertForCausalLMModule
def prepare_inputs_for_generation(self, input_ids, max_length, attention_mask: Optional[jnp.DeviceArray] = None):
# initializing the cache
batch_size, seq_length = input_ids.shape
past_key_values = self.init_cache(batch_size, max_length)
# Note that usually one would have to put 0's in the attention_mask for x > input_ids.shape[-1] and x < cache_length.
# But since the decoder uses a causal mask, those positions are masked anyway.
# Thus, we can create a single static attention_mask here, which is more efficient for compilation
extended_attention_mask = jnp.ones((batch_size, max_length), dtype="i4")
if attention_mask is not None:
position_ids = attention_mask.cumsum(axis=-1) - 1
extended_attention_mask = lax.dynamic_update_slice(extended_attention_mask, attention_mask, (0, 0))
else:
position_ids = jnp.broadcast_to(jnp.arange(seq_length, dtype="i4")[None, :], (batch_size, seq_length))
return {
"past_key_values": past_key_values,
"attention_mask": extended_attention_mask,
"position_ids": position_ids,
}
def update_inputs_for_generation(self, model_outputs, model_kwargs):
model_kwargs["past_key_values"] = model_outputs.past_key_values
model_kwargs["position_ids"] = model_kwargs["position_ids"][:, -1:] + 1
return model_kwargs
append_call_sample_docstring(
FlaxBertForCausalLM,
_TOKENIZER_FOR_DOC,
_CHECKPOINT_FOR_DOC,
FlaxCausalLMOutputWithCrossAttentions,
_CONFIG_FOR_DOC,
)
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2252,
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1915,
264,
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2272,
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565,
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276,
2847,
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310,
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613,
376,
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1989,
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359,
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432,
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524,
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13,
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334,
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954,
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2813,
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546,
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2813,
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1767,
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13,
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274,
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411,
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716,
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313,
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334,
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353,
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2378,
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353,
6213,
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13,
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6120,
353,
7700,
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13,
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5574,
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13,
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1962,
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1131,
296,
1080,
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6120,
353,
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13,
268,
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13,
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396,
565,
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28631,
526,
4944,
445,
7546,
338,
1304,
408,
263,
4891,
29899,
1131,
2509,
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13,
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396,
363,
278,
1602,
6119,
13,
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338,
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19128,
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1131,
2509,
353,
1820,
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1767,
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28631,
338,
451,
6213,
13,
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2311,
353,
7934,
29918,
28631,
29889,
12181,
29961,
29900,
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13,
13,
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396,
679,
2346,
410,
29926,
13,
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28631,
353,
1583,
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1972,
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13,
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396,
679,
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410,
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13,
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565,
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13,
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4891,
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296,
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13,
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353,
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13,
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995,
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353,
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13,
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353,
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3032,
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2813,
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1972,
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13,
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353,
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3032,
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2813,
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13,
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353,
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3032,
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13,
13,
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565,
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11918,
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613,
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3791,
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13,
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7503,
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584,
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1972,
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2848,
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13,
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284,
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353,
432,
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6729,
328,
4384,
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8977,
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348,
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13,
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363,
4567,
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1989,
297,
1583,
3032,
27259,
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13,
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8636,
29961,
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29918,
1989,
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353,
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7529,
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1989,
29962,
13,
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731,
580,
13,
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13,
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13,
13,
1678,
396,
10061,
1000,
515,
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414,
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29890,
442,
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4299,
292,
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29888,
21222,
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29890,
442,
29889,
29943,
21222,
29933,
442,
6185,
6119,
6572,
5323,
1312,
3195,
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2344,
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13,
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1311,
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2311,
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4236,
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2848,
1125,
13,
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364,
15945,
29908,
13,
4706,
826,
3174,
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13,
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29918,
2311,
6695,
524,
29952,
1125,
13,
18884,
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29918,
2311,
1304,
363,
5172,
4469,
29899,
276,
3663,
573,
1602,
3689,
29889,
5282,
1475,
278,
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2159,
310,
278,
16601,
7090,
29889,
13,
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4236,
29918,
2848,
6695,
524,
29952,
1125,
13,
18884,
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1950,
3309,
363,
4469,
29899,
276,
3663,
573,
1602,
3689,
29889,
5282,
1475,
278,
5665,
3309,
310,
278,
16601,
13,
18884,
7090,
29889,
13,
4706,
9995,
13,
4706,
396,
2069,
1881,
3651,
304,
10563,
7090,
13,
4706,
1881,
29918,
4841,
353,
432,
9302,
29889,
2873,
3552,
16175,
29918,
2311,
29892,
4236,
29918,
2848,
511,
26688,
543,
29875,
29946,
1159,
13,
4706,
8570,
29918,
13168,
353,
432,
9302,
29889,
2873,
29918,
4561,
29898,
2080,
29918,
4841,
29892,
26688,
543,
29875,
29946,
1159,
13,
4706,
2602,
29918,
4841,
353,
432,
9302,
29889,
6729,
328,
4384,
29918,
517,
29898,
29926,
9302,
29889,
279,
927,
29898,
29926,
9302,
29889,
271,
280,
579,
29918,
29906,
29881,
29898,
2080,
29918,
4841,
467,
12181,
14352,
29896,
11724,
1881,
29918,
4841,
29889,
12181,
29897,
13,
13,
4706,
2069,
29918,
20897,
353,
1583,
29889,
5453,
29889,
2344,
29898,
13,
9651,
432,
1165,
29889,
8172,
29889,
10593,
9312,
2558,
29898,
29900,
511,
1881,
29918,
4841,
29892,
8570,
29918,
13168,
29892,
2602,
29918,
4841,
29892,
736,
29918,
8977,
29922,
8824,
29892,
2069,
29918,
8173,
29922,
5574,
13,
4706,
1723,
13,
4706,
736,
443,
9021,
911,
29898,
2344,
29918,
20897,
3366,
8173,
20068,
13,
13,
1678,
732,
1202,
29918,
2962,
29918,
1514,
19651,
29918,
517,
29918,
4299,
29918,
11333,
29898,
13635,
29911,
29918,
1177,
12336,
29903,
29918,
28665,
20785,
29889,
4830,
703,
16175,
29918,
2311,
29892,
5665,
29918,
2848,
5783,
13,
1678,
822,
4770,
4804,
12035,
13,
4706,
1583,
29892,
13,
4706,
1881,
29918,
4841,
29892,
13,
4706,
8570,
29918,
13168,
29922,
8516,
29892,
13,
4706,
5993,
29918,
1853,
29918,
4841,
29922,
8516,
29892,
13,
4706,
2602,
29918,
4841,
29922,
8516,
29892,
13,
4706,
2343,
29918,
13168,
29922,
8516,
29892,
13,
4706,
2094,
6119,
29918,
10892,
29918,
28631,
29922,
8516,
29892,
13,
4706,
2094,
6119,
29918,
1131,
2509,
29918,
13168,
29922,
8516,
29892,
13,
4706,
8636,
29901,
9657,
353,
6213,
29892,
13,
4706,
5768,
449,
29918,
29878,
865,
29901,
432,
1165,
29889,
8172,
29889,
10593,
9312,
2558,
353,
6213,
29892,
13,
4706,
7945,
29901,
6120,
353,
7700,
29892,
13,
4706,
1962,
29918,
1131,
296,
1080,
29901,
28379,
29961,
11227,
29962,
353,
6213,
29892,
13,
4706,
1962,
29918,
10892,
29918,
28631,
29901,
28379,
29961,
11227,
29962,
353,
6213,
29892,
13,
4706,
736,
29918,
8977,
29901,
28379,
29961,
11227,
29962,
353,
6213,
29892,
13,
4706,
4940,
29918,
1989,
29918,
5975,
29901,
9657,
353,
6213,
29892,
13,
268,
1125,
13,
4706,
1962,
29918,
1131,
296,
1080,
353,
1962,
29918,
1131,
296,
1080,
565,
1962,
29918,
1131,
296,
1080,
338,
451,
6213,
1683,
1583,
29889,
2917,
29889,
4905,
29918,
1131,
296,
1080,
13,
4706,
1962,
29918,
10892,
29918,
28631,
353,
313,
13,
9651,
1962,
29918,
10892,
29918,
28631,
565,
1962,
29918,
10892,
29918,
28631,
338,
451,
6213,
1683,
1583,
29889,
2917,
29889,
4905,
29918,
10892,
29918,
28631,
13,
4706,
1723,
13,
4706,
736,
29918,
8977,
353,
736,
29918,
8977,
565,
736,
29918,
8977,
338,
451,
6213,
1683,
1583,
29889,
2917,
29889,
2457,
29918,
8977,
13,
13,
4706,
396,
2069,
1881,
25187,
943,
565,
451,
4502,
13,
4706,
565,
5993,
29918,
1853,
29918,
4841,
338,
6213,
29901,
13,
9651,
5993,
29918,
1853,
29918,
4841,
353,
432,
9302,
29889,
3298,
359,
29918,
4561,
29898,
2080,
29918,
4841,
29897,
13,
13,
4706,
565,
2602,
29918,
4841,
338,
6213,
29901,
13,
9651,
2602,
29918,
4841,
353,
432,
9302,
29889,
6729,
328,
4384,
29918,
517,
29898,
29926,
9302,
29889,
279,
927,
29898,
29926,
9302,
29889,
271,
280,
579,
29918,
29906,
29881,
29898,
2080,
29918,
4841,
467,
12181,
14352,
29896,
11724,
1881,
29918,
4841,
29889,
12181,
29897,
13,
13,
4706,
565,
8570,
29918,
13168,
338,
6213,
29901,
13,
9651,
8570,
29918,
13168,
353,
432,
9302,
29889,
2873,
29918,
4561,
29898,
2080,
29918,
4841,
29897,
13,
13,
4706,
565,
2343,
29918,
13168,
338,
6213,
29901,
13,
9651,
2343,
29918,
13168,
353,
432,
9302,
29889,
2873,
3552,
1311,
29889,
2917,
29889,
1949,
29918,
10892,
29918,
29277,
29892,
1583,
29889,
2917,
29889,
1949,
29918,
1131,
2509,
29918,
2813,
29879,
876,
13,
13,
4706,
396,
29273,
738,
12089,
9312,
565,
4312,
13,
4706,
364,
865,
29879,
353,
6571,
13,
4706,
565,
5768,
449,
29918,
29878,
865,
338,
451,
6213,
29901,
13,
9651,
364,
865,
29879,
3366,
8865,
449,
3108,
353,
5768,
449,
29918,
29878,
865,
13,
13,
4706,
10970,
353,
8853,
7529,
1115,
8636,
470,
1583,
29889,
7529,
29913,
13,
13,
4706,
565,
1583,
29889,
2917,
29889,
1202,
29918,
19128,
29918,
1131,
2509,
29901,
13,
9651,
396,
565,
4940,
29918,
1989,
29918,
5975,
526,
4502,
769,
7090,
338,
2307,
16601,
263,
2024,
7353,
2069,
29918,
8173,
756,
304,
367,
4502,
13,
9651,
396,
1623,
304,
9801,
7090,
338,
1304,
29889,
739,
756,
304,
367,
1754,
1854,
393,
7090,
338,
10902,
408,
26691,
577,
393,
372,
508,
367,
13,
9651,
396,
3939,
491,
383,
21222,
29933,
814,
4165,
2509,
3883,
13,
9651,
565,
4940,
29918,
1989,
29918,
5975,
29901,
13,
18884,
10970,
3366,
8173,
3108,
353,
4940,
29918,
1989,
29918,
5975,
13,
18884,
26691,
353,
6796,
8173,
3108,
13,
9651,
1683,
29901,
13,
18884,
26691,
353,
7700,
13,
13,
9651,
14391,
353,
1583,
29889,
5453,
29889,
7302,
29898,
13,
18884,
10970,
29892,
13,
18884,
432,
9302,
29889,
2378,
29898,
2080,
29918,
4841,
29892,
26688,
543,
29875,
29946,
4968,
13,
18884,
432,
9302,
29889,
2378,
29898,
1131,
2509,
29918,
13168,
29892,
26688,
543,
29875,
29946,
4968,
13,
18884,
5993,
29918,
1853,
29918,
4841,
29922,
29926,
9302,
29889,
2378,
29898,
6979,
29918,
1853,
29918,
4841,
29892,
26688,
543,
29875,
29946,
4968,
13,
18884,
2602,
29918,
4841,
29922,
29926,
9302,
29889,
2378,
29898,
3283,
29918,
4841,
29892,
26688,
543,
29875,
29946,
4968,
13,
18884,
2343,
29918,
13168,
29922,
29926,
9302,
29889,
2378,
29898,
2813,
29918,
13168,
29892,
26688,
543,
29875,
29946,
4968,
13,
18884,
2094,
6119,
29918,
10892,
29918,
28631,
29922,
3977,
6119,
29918,
10892,
29918,
28631,
29892,
13,
18884,
2094,
6119,
29918,
1131,
2509,
29918,
13168,
29922,
3977,
6119,
29918,
1131,
2509,
29918,
13168,
29892,
13,
18884,
11806,
4695,
29922,
1333,
7945,
29892,
13,
18884,
1962,
29918,
1131,
296,
1080,
29922,
4905,
29918,
1131,
296,
1080,
29892,
13,
18884,
1962,
29918,
10892,
29918,
28631,
29922,
4905,
29918,
10892,
29918,
28631,
29892,
13,
18884,
736,
29918,
8977,
29922,
2457,
29918,
8977,
29892,
13,
18884,
364,
865,
29879,
29922,
29878,
865,
29879,
29892,
13,
18884,
26691,
29922,
23975,
29892,
13,
9651,
1723,
13,
13,
9651,
396,
788,
4784,
7090,
304,
1904,
1962,
13,
9651,
565,
4940,
29918,
1989,
29918,
5975,
338,
451,
6213,
322,
736,
29918,
8977,
29901,
13,
18884,
14391,
29892,
4940,
29918,
1989,
29918,
5975,
353,
14391,
13,
18884,
14391,
3366,
29886,
579,
29918,
1989,
29918,
5975,
3108,
353,
443,
9021,
911,
29898,
29886,
579,
29918,
1989,
29918,
5975,
3366,
8173,
20068,
13,
18884,
736,
14391,
13,
9651,
25342,
4940,
29918,
1989,
29918,
5975,
338,
451,
6213,
322,
451,
736,
29918,
8977,
29901,
13,
18884,
14391,
29892,
4940,
29918,
1989,
29918,
5975,
353,
14391,
13,
18884,
14391,
353,
14391,
7503,
29896,
29962,
718,
313,
348,
9021,
911,
29898,
29886,
579,
29918,
1989,
29918,
5975,
3366,
8173,
3108,
511,
29897,
718,
14391,
29961,
29896,
17531,
13,
13,
4706,
1683,
29901,
13,
9651,
14391,
353,
1583,
29889,
5453,
29889,
7302,
29898,
13,
18884,
10970,
29892,
13,
18884,
432,
9302,
29889,
2378,
29898,
2080,
29918,
4841,
29892,
26688,
543,
29875,
29946,
4968,
13,
18884,
432,
9302,
29889,
2378,
29898,
1131,
2509,
29918,
13168,
29892,
26688,
543,
29875,
29946,
4968,
13,
18884,
5993,
29918,
1853,
29918,
4841,
29922,
29926,
9302,
29889,
2378,
29898,
6979,
29918,
1853,
29918,
4841,
29892,
26688,
543,
29875,
29946,
4968,
13,
18884,
2602,
29918,
4841,
29922,
29926,
9302,
29889,
2378,
29898,
3283,
29918,
4841,
29892,
26688,
543,
29875,
29946,
4968,
13,
18884,
2343,
29918,
13168,
29922,
29926,
9302,
29889,
2378,
29898,
2813,
29918,
13168,
29892,
26688,
543,
29875,
29946,
4968,
13,
18884,
11806,
4695,
29922,
1333,
7945,
29892,
13,
18884,
1962,
29918,
1131,
296,
1080,
29922,
4905,
29918,
1131,
296,
1080,
29892,
13,
18884,
1962,
29918,
10892,
29918,
28631,
29922,
4905,
29918,
10892,
29918,
28631,
29892,
13,
18884,
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13,
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13,
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13,
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2602,
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13,
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13,
13,
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7934,
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353,
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13,
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565,
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2917,
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29873,
347,
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1742,
29918,
17987,
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886,
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13,
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3366,
7529,
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13,
13,
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278,
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13,
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25932,
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7258,
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17987,
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29922,
12366,
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17987,
8497,
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13,
13,
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565,
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736,
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8977,
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13,
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313,
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1169,
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718,
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17531,
13,
13,
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736,
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21222,
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287,
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6466,
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13,
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1480,
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13,
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7934,
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4905,
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13,
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13,
13,
13,
29992,
1202,
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2962,
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1514,
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703,
15945,
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814,
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411,
263,
421,
11675,
1904,
292,
29952,
2343,
373,
2246,
1213,
29908,
613,
350,
20161,
29918,
25826,
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28665,
20785,
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13,
1990,
383,
21222,
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814,
2831,
19832,
287,
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29943,
21222,
29933,
814,
6572,
5323,
1312,
3195,
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13,
1678,
3883,
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1990,
353,
383,
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814,
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287,
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13,
13,
13,
4397,
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4804,
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3210,
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28665,
13,
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13,
13,
13,
1990,
383,
21222,
29933,
814,
2831,
9190,
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296,
663,
23084,
2463,
7355,
29898,
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13,
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2295,
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3991,
13,
1678,
26688,
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432,
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1853,
353,
432,
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7411,
29941,
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13,
13,
1678,
822,
6230,
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1311,
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13,
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353,
383,
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814,
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1311,
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1853,
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13,
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25932,
353,
383,
21222,
29933,
814,
11730,
3059,
29925,
5494,
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1853,
29922,
1311,
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1853,
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13,
13,
1678,
822,
4770,
4804,
12035,
13,
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13,
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1881,
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4841,
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13,
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8570,
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13,
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2602,
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13,
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1962,
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28631,
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13,
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8977,
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353,
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13,
268,
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13,
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565,
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338,
451,
6213,
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1583,
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2457,
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13,
13,
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396,
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13,
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353,
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13,
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4841,
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13,
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8570,
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13,
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13,
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262,
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296,
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13,
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1962,
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13,
13,
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772,
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4905,
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13,
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2674,
800,
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25932,
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1129,
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4905,
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13,
13,
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565,
451,
736,
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8977,
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13,
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313,
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2674,
800,
4034,
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1557,
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718,
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17531,
13,
13,
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736,
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21222,
9190,
29903,
296,
663,
23084,
919,
272,
6466,
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13,
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1480,
1169,
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2674,
800,
4034,
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13,
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296,
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13,
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13,
13,
13,
29992,
1202,
29918,
2962,
29918,
1514,
19651,
29898,
13,
1678,
9995,
29933,
814,
8125,
411,
263,
421,
4622,
10541,
18988,
313,
1990,
2450,
3569,
2343,
373,
2246,
1213,
29908,
613,
13,
1678,
350,
20161,
29918,
25826,
29918,
28665,
20785,
29892,
13,
29897,
13,
1990,
383,
21222,
29933,
814,
2831,
9190,
29903,
296,
663,
23084,
2463,
29898,
29943,
21222,
29933,
814,
6572,
5323,
1312,
3195,
1125,
13,
1678,
3883,
29918,
1990,
353,
383,
21222,
29933,
814,
2831,
9190,
29903,
296,
663,
23084,
2463,
7355,
13,
13,
13,
18823,
29990,
29918,
13635,
29911,
29918,
22051,
29918,
29940,
12194,
29918,
29903,
3919,
29918,
15094,
29928,
29918,
28665,
20785,
353,
9995,
13,
1678,
16969,
29901,
13,
13,
1678,
8741,
29901,
13,
13,
1678,
7521,
4691,
13,
1678,
8653,
515,
4327,
414,
1053,
16662,
6066,
3950,
29892,
383,
21222,
29933,
814,
2831,
9190,
29903,
296,
663,
23084,
2463,
13,
13,
1678,
8653,
5993,
3950,
353,
16662,
6066,
3950,
29889,
3166,
29918,
1457,
3018,
1312,
703,
2151,
29899,
3188,
29899,
4661,
1463,
1159,
13,
1678,
8653,
1904,
353,
383,
21222,
29933,
814,
2831,
9190,
29903,
296,
663,
23084,
2463,
29889,
3166,
29918,
1457,
3018,
1312,
703,
2151,
29899,
3188,
29899,
4661,
1463,
1159,
13,
13,
1678,
8653,
9508,
353,
376,
797,
12730,
29892,
282,
24990,
6766,
297,
11595,
6055,
29892,
1316,
408,
472,
263,
27144,
29892,
338,
9132,
9644,
506,
287,
1213,
13,
1678,
8653,
2446,
29918,
18616,
663,
353,
376,
1576,
14744,
338,
7254,
2861,
304,
278,
20511,
281,
6447,
1477,
310,
7254,
3578,
1213,
13,
1678,
8653,
8025,
353,
5993,
3950,
29898,
14032,
415,
29892,
2446,
29918,
18616,
663,
29892,
736,
29918,
29873,
575,
943,
543,
6487,
1159,
13,
13,
1678,
8653,
14391,
353,
1904,
29898,
1068,
22331,
29897,
13,
1678,
8653,
1480,
1169,
353,
14391,
29889,
1188,
1169,
13,
1678,
8653,
4974,
1480,
1169,
29961,
29900,
29892,
29871,
29900,
29962,
529,
1480,
1169,
29961,
29900,
29892,
29871,
29896,
29962,
29871,
396,
2446,
10541,
471,
4036,
13,
1678,
7521,
13,
15945,
29908,
13,
13,
13,
957,
3539,
29918,
4804,
29918,
1514,
1807,
29898,
13,
1678,
383,
21222,
29933,
814,
2831,
9190,
29903,
296,
663,
23084,
2463,
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13,
1678,
350,
20161,
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1177,
12336,
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28665,
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4830,
703,
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29918,
2311,
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5665,
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2848,
1159,
718,
383,
4375,
29990,
29918,
13635,
29911,
29918,
22051,
29918,
29940,
12194,
29918,
29903,
3919,
29918,
15094,
29928,
29918,
28665,
20785,
29892,
13,
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13,
4397,
29918,
6506,
29918,
2457,
29918,
1514,
19651,
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13,
1678,
383,
21222,
29933,
814,
2831,
9190,
29903,
296,
663,
23084,
2463,
29892,
1962,
29918,
1853,
29922,
29943,
21222,
9190,
29903,
296,
663,
23084,
919,
272,
6466,
29892,
2295,
29918,
1990,
29922,
29918,
25903,
29918,
22051,
29918,
28665,
13,
29897,
13,
13,
13,
1990,
383,
21222,
29933,
814,
2831,
20529,
2385,
2450,
7355,
29898,
15755,
29889,
7355,
1125,
13,
1678,
2295,
29901,
16662,
3991,
13,
1678,
26688,
29901,
432,
9302,
29889,
29881,
1853,
353,
432,
9302,
29889,
7411,
29941,
29906,
13,
13,
1678,
822,
6230,
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1311,
1125,
13,
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2151,
353,
383,
21222,
29933,
814,
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1311,
29889,
2917,
29892,
26688,
29922,
1311,
29889,
29881,
1853,
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13,
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770,
3709,
29918,
8865,
449,
353,
313,
13,
9651,
1583,
29889,
2917,
29889,
1990,
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] |
hex-to-dec/eval.py | adiyen/jetson-projects | 0 | 37283 | # MIT License
# Copyright (c) 2019 JetsonHacks
# See license
# Using a CSI camera (such as the Raspberry Pi Version 2) connected to a
# NVIDIA Jetson Nano Developer Kit using OpenCV
# Drivers for the camera and OpenCV are included in the base image
from __future__ import print_function
import os
import argparse
import numpy as np
import cv2
import torch
import torch.nn as nn
import torch.nn.functional as F
import torch.optim as optim
from torchvision import datasets, transforms
from train import Net
# gstreamer_pipeline returns a GStreamer pipeline for capturing from the CSI camera
# Defaults to 1280x720 @ 60fps
# Flip the image by setting the flip_method (most common values: 0 and 2)
# display_width and display_height determine the size of the window on the screen
def gstreamer_pipeline (capture_width=1280, capture_height=720, display_width=640, display_height=360, framerate=20, flip_method=0) :
return ('nvarguscamerasrc ! '
'video/x-raw(memory:NVMM), '
'width=(int)%d, height=(int)%d, '
'format=(string)NV12, framerate=(fraction)%d/1 ! '
'nvvidconv flip-method=%d ! '
'video/x-raw, width=(int)%d, height=(int)%d, format=(string)BGRx ! '
'videoconvert ! '
'video/x-raw, format=(string)BGR ! appsink' % (capture_width,capture_height,framerate,flip_method,display_width,display_height))
def transform_inputs(image, device):
img = cv2.resize(image, (28, 28), interpolation=cv2.INTER_AREA)
# img = cv2.resize(image, (28, 28))
# image = cv2.threshold(image0, 50, 255, cv2.THRESH_BINARY)[1]
blur = cv2.GaussianBlur(img,(5,5),0)
image = cv2.threshold(blur,0,255,cv2.THRESH_BINARY_INV+cv2.THRESH_OTSU)[1]
# image = image[np.newaxis, ...]
transform = transforms.Compose([
transforms.ToTensor(),
transforms.Normalize((0.1307,), (0.3081,))
])
inputs = transform(image)
inputs = inputs.unsqueeze(0)
return inputs.to(device)
def show_camera(args):
# To flip the image, modify the flip_method parameter (0 and 2 are the most common)
print(gstreamer_pipeline(flip_method=0))
labels = []
with open("data/labels.txt", "r") as f:
for line in f:
labels.append(line.strip())
use_cuda = torch.cuda.is_available()
device = torch.device("cuda" if use_cuda else "cpu")
model = Net(n_classes=len(labels))
model.load_state_dict(torch.load(args.model_path))
model = model.to(device)
font = cv2.FONT_HERSHEY_SIMPLEX
fontScale = 1
org = (30, 50)
color = (0, 0, 255)
thickness = 2
cap = cv2.VideoCapture(gstreamer_pipeline(flip_method=0), cv2.CAP_GSTREAMER)
if cap.isOpened():
window_handle = cv2.namedWindow('Camera', cv2.WINDOW_AUTOSIZE)
# Window
while cv2.getWindowProperty('Camera',0) >= 0:
ret_val, img = cap.read()
# Convert to grayscale and apply Gaussian filtering
im_gray = cv2.cvtColor(img, cv2.COLOR_BGR2GRAY)
im_gray = cv2.GaussianBlur(im_gray, (5, 5), 0)
# Threshold the image
ret, im_th = cv2.threshold(im_gray, 90, 255, cv2.THRESH_BINARY_INV)
# Find contours in the image
im2, ctrs, hier = cv2.findContours(im_th, cv2.RETR_EXTERNAL, cv2.CHAIN_APPROX_SIMPLE)
# Get rectangles contains each contour
rects = [cv2.boundingRect(ctr) for ctr in ctrs]
# For each rectangular region, calculate HOG features and predict
# the digit using Linear SVM.
for rect in rects:
# Draw the rectangles
cv2.rectangle(img, (rect[0], rect[1]), (rect[0] + rect[2], rect[1] + rect[3]), (0, 255, 0), 3)
# Make the rectangular region around the digit
leng = int(rect[3] * 1.6)
pt1 = int(rect[1] + rect[3] // 2 - leng // 2)
pt2 = int(rect[0] + rect[2] // 2 - leng // 2)
roi = im_gray[pt1:pt1+leng, pt2:pt2+leng]
# Resize the image
h, w = roi.shape
if h > 10 and w > 10:
# Transform inputs
inputs = transform_inputs(roi, device)
# Run Model Evaluation
output = model(inputs)
result = output.data.cpu().numpy().argmax()
cv2.putText(img, labels[result], (rect[0], rect[1]),cv2.FONT_HERSHEY_DUPLEX, 2, (0, 255, 255), 3)
cv2.imshow("Camera", img)
# This also acts as
keyCode = cv2.waitKey(30) & 0xff
# Stop the program on the ESC key
if keyCode == 27:
break
cap.release()
cv2.destroyAllWindows()
else:
print('Unable to open camera')
if __name__ == '__main__':
parser = argparse.ArgumentParser(description='PyTorch MNIST Example')
parser.add_argument('--model_path', default="models/model.pt")
args = parser.parse_args()
show_camera(args)
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] |
deep_hipsc_tracking/plotting/compartment_plot.py | JackToppen/deep-hipsc-tracking | 2 | 36448 | """ Plot data split by compartments
Classes:
* :py:class:`CompartmentPlot`: compartment plotting tool
"""
# Standard lib
from typing import Tuple, Optional, Dict
# 3rd party imports
import numpy as np
import matplotlib.pyplot as plt
import pandas as pd
import seaborn as sns
# Our own imports
from .styling import set_plot_style
from .utils import bootstrap_ci, get_histogram
# Classes
class CompartmentPlot(object):
""" Plot data split by multiple compartments
:param int n_compartments:
How many compartments to split the data into
:param int topk:
How many samples to take from each compartment
"""
def __init__(self,
n_compartments: int,
topk: Optional[int] = None,
figsize: Tuple[int] = (8, 8),
plot_style: str = 'dark',
suffix: str = '.png'):
self.n_compartments = n_compartments
self.topk = topk
self.figsize = figsize
self.plot_style = plot_style
self.suffix = suffix
# Color palettes for the different compartments
self.colors = (['blue', 'orange', 'green', 'red', 'purple', 'grey'])[:n_compartments]
self.palletes = [sns.color_palette(c.capitalize()+'s', n_colors=10)
for c in self.colors]
# Calculated values
self._bin_indices = None
self._bin_values = None
self._xdata = None
self._xcolumn = None
self._ycolumn = None
self._plotdata = None
self._distdata = None
self._total_count = None
def calc_indices(self, values: np.ndarray):
""" Calculate the indicies for each bin
:param ndarray values:
The values to use to generate the bins
"""
if self.topk is None:
self.topk = values.shape[0] // self.n_compartments
if values.shape[0] < self.topk * self.n_compartments:
err = 'Got too few values for {} samples of {} compartments: {}'
err = err.format(self.topk, self.n_compartments, values.shape[0])
raise ValueError(err)
print(f'Spliting into {self.n_compartments} compartments of {self.topk} samples each')
# Sort all the indices
indices = np.argsort(values)
# Split into even bins of size topk
bin_start = np.floor(np.linspace(0, indices.shape[0]-self.topk, self.n_compartments))
bin_start[bin_start < 0] = 0
bin_end = bin_start + self.topk
bin_end[bin_end > indices.shape[0]] = indices.shape[0]
# Extract the sorted bins for each compartment
self._bin_indices = [indices[int(s):int(e)] for s, e in zip(bin_start, bin_end)]
def calc_bin(self,
bin_value: np.ndarray,
label: str,
total_count: int) -> Dict[str, float]:
""" Calculate all the stats for a single bin
:param ndarray bin_value:
The 2D array of n timepoints x k samples
:param str label:
The label for this category
:param int total_count:
The total number of samples in this bin
:returns:
A dictionary of bin stats for plotting
"""
bin_mean = np.nanmean(bin_value, axis=1)
bin_std = np.nanstd(bin_value, axis=1)
bin5, bin25, bin50, bin75, bin95 = np.nanpercentile(bin_value, [5, 25, 50, 75, 95], axis=1)
bin_mean_ci0, bin_mean_ci1 = bootstrap_ci(bin_value, func=np.nanmean, axis=1)
assert bin_mean_ci0.shape == bin_mean.shape
assert bin_mean_ci1.shape == bin_mean.shape
bin_median_ci0, bin_median_ci1 = bootstrap_ci(bin_value, func=np.nanmedian, axis=1)
assert bin_median_ci0.shape == bin50.shape
assert bin_median_ci0.shape == bin50.shape
# Work out how many samples/bin we have in each timepoint
bin_count = np.sum(~np.isnan(bin_value), axis=1)
bin_support = bin_count / total_count
bin_support[~np.isfinite(bin_support)] = 0
# Stash all the values for later
return {
'mean' + label: bin_mean,
'mean ci low' + label: bin_mean_ci0,
'mean ci high' + label: bin_mean_ci1,
'std' + label: bin_std,
'p5' + label: bin5,
'p25' + label: bin25,
'p50' + label: bin50,
'p50 ci low' + label: bin_median_ci0,
'p50 ci high' + label: bin_median_ci1,
'p75' + label: bin75,
'p95' + label: bin95,
'count' + label: bin_count,
'support' + label: bin_support,
}
def split_comparison(self,
data: Dict[str, np.ndarray],
xcolumn: str,
ycolumn: str,
integrate_values: bool = False):
""" Split the comparison by the bins
:param dict[str, Any] data:
A dictionary containing the xcolumn and ycolumn data
:param str xcolumn:
The column containing the shared time vector to plot along
:param str ycolumn:
The column containing the values to bin along
:param bool integrate_values:
If True, integrate the resulting statistics over the xdata range
"""
xdata = data[xcolumn]
plotdata = {
xcolumn: xdata,
}
values = np.stack(data[ycolumn], axis=1)
total_count = np.sum(~np.isnan(values), axis=1)
if values.shape[0] != xdata.shape[0]:
raise ValueError('Expected {} with shape {}, got {}'.format(ycolumn, xdata.shape[0], values.shape[0]))
bin_values = []
# Add a set for all the values
plotdata.update(self.calc_bin(values, f' {ycolumn} all', total_count))
for i, indices in enumerate(self._bin_indices):
bin_value = values[:, indices]
bin_values.append(bin_value)
label = f' {ycolumn} bin{i+1}'
plotdata.update(self.calc_bin(bin_value, label, total_count))
self._plotdata = plotdata
self._xdata = xdata
self._xcolumn = xcolumn
self._ycolumn = ycolumn
self._bin_values = bin_values
self._total_count = total_count
def calc_envelope(self, label: str, envelope: str = 'std') -> Tuple[float]:
""" Calculate the envelope (high/low) stats for a label
:param str label:
The label to calculate the envelope for
:param str envelope:
Which stats to calculate the envelope with
:returns:
A tuple of low, high values
"""
plotdata = self._plotdata
if envelope == 'std':
value_mean = plotdata['mean' + label]
value_std = plotdata['std' + label]
value_st = value_mean - value_std
value_ed = value_mean + value_std
elif envelope == 'mean ci':
value_st = plotdata['mean ci low' + label]
value_ed = plotdata['mean ci high' + label]
elif envelope == 'median ci':
value_st = plotdata['p50 ci low' + label]
value_ed = plotdata['p50 ci high' + label]
elif envelope == 'iqr':
value_st = plotdata['p25' + label]
value_ed = plotdata['p75' + label]
else:
raise ValueError('Unknown envelope function "{}"'.format(envelope))
return value_st, value_ed
def plot_raw_tracks(self, outfile=None, xlabel=None, ylabel=None):
""" Plot individual raw tracks """
with set_plot_style(self.plot_style) as style:
fig, ax = plt.subplots(1, 1, figsize=self.figsize)
for i, bin_value in enumerate(self._bin_values):
ax.set_prop_cycle(color=self.palletes[i])
ax.plot(self._xdata, bin_value, '-')
if xlabel is not None:
ax.set_xlabel(xlabel)
if ylabel is not None:
ax.set_ylabel(ylabel)
style.show(outfile=outfile, fig=fig)
def plot_mean_tracks(self, outfile=None, xlabel=None, ylabel=None, envelope='std', mode='split'):
""" Mean and deviation envelope
:param Path outfile:
If not None, the file to write out
:param str xlabel:
Label for the x-axis (time)
:param str ylabel:
Label for the y-axis (category)
"""
plotdata = self._plotdata
with set_plot_style(self.plot_style) as style:
fig, ax = plt.subplots(1, 1, figsize=self.figsize)
if mode == 'split':
for i in range(self.n_compartments):
label = ' {} bin{}'.format(self._ycolumn, i+1)
value_mean = plotdata['mean' + label]
value_st, value_ed = self.calc_envelope(label, envelope)
ax.fill_between(self._xdata, value_st, value_ed,
facecolor=self.colors[i], alpha=0.5)
ax.plot(self._xdata, value_mean, '-', color=self.colors[i], linewidth=2)
elif mode == 'all':
label = ' {} all'.format(self._ycolumn)
value_mean = plotdata['mean' + label]
value_st, value_ed = self.calc_envelope(label, envelope)
ax.fill_between(self._xdata, value_st, value_ed,
facecolor='b', alpha=0.5)
ax.plot(self._xdata, value_mean, '-', color='b', linewidth=2)
else:
raise ValueError('Unknown mode {}'.format(mode))
if xlabel is not None:
ax.set_xlabel(xlabel)
if ylabel is not None:
ax.set_ylabel(ylabel)
style.show(outfile=outfile, fig=fig)
def plot_median_tracks(self, outfile=None, xlabel=None, ylabel=None, envelope='iqr', mode='split'):
""" Median and 25/75% envelope """
plotdata = self._plotdata
with set_plot_style(self.plot_style) as style:
fig, ax = plt.subplots(1, 1, figsize=self.figsize)
if mode == 'split':
for i in range(self.n_compartments):
label = ' {} bin{}'.format(self._ycolumn, i+1)
value_mid = plotdata['p50' + label]
value_st, value_ed = self.calc_envelope(label, envelope)
ax.fill_between(self._xdata, value_st, value_ed,
facecolor=self.colors[i], alpha=0.5)
ax.plot(self._xdata, value_mid, '-', color=self.colors[i], linewidth=2)
elif mode == 'all':
label = ' {} all'.format(self._ycolumn)
value_mean = plotdata['p50' + label]
value_st, value_ed = self.calc_envelope(label, envelope)
ax.fill_between(self._xdata, value_st, value_ed,
facecolor='b', alpha=0.5)
ax.plot(self._xdata, value_mean, '-', color='b', linewidth=2)
else:
raise ValueError('Unknown mode {}'.format(mode))
if xlabel is not None:
ax.set_xlabel(xlabel)
if ylabel is not None:
ax.set_ylabel(ylabel)
style.show(outfile=outfile, fig=fig)
def plot_track_support(self, outfile=None, xlabel=None, ylabel=None):
""" Plot how many tracks are in a given bin at a given time """
plotdata = self._plotdata
with set_plot_style(self.plot_style) as style:
fig_x, fig_y = self.figsize
fig, (ax1, ax2) = plt.subplots(1, 2, figsize=(fig_x*2, fig_y))
ax1.plot(self._xdata, self._total_count, '-k', linewidth=2)
ax2.hlines([100], np.min(self._xdata), np.max(self._xdata), colors=['k'], linewidth=2)
for i in range(self.n_compartments):
label = ' {} bin{}'.format(self._ycolumn, i+1)
count = plotdata['count' + label]
support = plotdata['support' + label]
ax1.plot(self._xdata, count, '-', color=self.colors[i], linewidth=2)
ax2.plot(self._xdata, support*100, '-', color=self.colors[i], linewidth=2)
if xlabel is not None:
ax1.set_xlabel(xlabel)
ax2.set_xlabel(xlabel)
ax1.set_ylabel('Num Tracks')
ax2.set_ylabel('Percent Total Tracks')
ax1.set_ylim([0, np.max(self._total_count)*1.02])
ax2.set_ylim([0, 102])
style.show(outfile=outfile, fig=fig)
def plot_dist_histogram(self, values, outfile=None, xlabel=None, ylabel=None):
""" Plot where on the histogram each value occurs
:param ndarray values:
The values to generate a histogram for
:param Path outfile:
If not None, the path to save the plot to
"""
# Histogram the distribution and which compartments are being labeled
_, _, kernel_x, kernel_y = get_histogram(values, bins=10, kernel_smoothing=True)
compartment_values = [values[indices] for indices in self._bin_indices]
distdata = {
'compartment': [],
'value': [],
'density': [],
}
# Now, plot each compartment on the total histogram
with set_plot_style(self.plot_style) as style:
fig, ax = plt.subplots(1, 1, figsize=self.figsize)
ax.plot(kernel_x, kernel_y, '-', color='gray')
distdata['compartment'].extend(0 for _ in kernel_x)
distdata['value'].extend(kernel_x)
distdata['density'].extend(kernel_y)
for i, compartment_value in enumerate(compartment_values):
compartment_min = np.min(compartment_value)
compartment_max = np.max(compartment_value)
kernel_mask = np.logical_and(kernel_x >= compartment_min,
kernel_x <= compartment_max)
compartment_x = kernel_x[kernel_mask]
compartment_y = kernel_y[kernel_mask]
distdata['compartment'].extend(i+1 for _ in compartment_x)
distdata['value'].extend(compartment_x)
distdata['density'].extend(compartment_y)
ax.fill_between(compartment_x, 0, compartment_y,
facecolor=self.colors[i], alpha=0.5)
ax.plot(compartment_x, compartment_y, '-',
color=self.colors[i], linewidth=2)
if xlabel is not None:
ax.set_xlabel(xlabel)
if ylabel is not None:
ax.set_ylabel(ylabel)
style.show(outfile=outfile, fig=fig)
self._distdata = distdata
def save_plotdata(self, outfile, suffix='.csv'):
""" Save the plot data """
if self._plotdata is None:
raise ValueError('No distribution data, call split_comparison first')
outfile = outfile.parent / (outfile.stem + suffix)
print('Writing distribution data to {}'.format(outfile))
plotdata = pd.DataFrame(self._plotdata)
if suffix == '.csv':
plotdata.to_csv(str(outfile), header=True, index=False)
elif suffix == '.xlsx':
plotdata.to_excel(str(outfile), header=True, index=False)
else:
raise KeyError('Unknown plot data output file type: {}'.format(outfile))
def save_distdata(self, outfile, suffix='.csv'):
""" Save the distribution data """
if self._distdata is None:
raise ValueError('No distribution data, call plot_dist_histogram first')
outfile = outfile.parent / (outfile.stem + suffix)
print('Writing distribution data to {}'.format(outfile))
distdata = pd.DataFrame(self._distdata)
if suffix == '.csv':
distdata.to_csv(str(outfile), header=True, index=False)
elif suffix == '.xlsx':
distdata.to_excel(str(outfile), header=True, index=False)
else:
raise KeyError('Unknown dist data output file type: {}'.format(outfile))
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] |
process/LanesFrom2D.py | sameeptandon/sail-car-log | 1 | 180021 | <reponame>sameeptandon/sail-car-log<filename>process/LanesFrom2D.py<gh_stars>1-10
import bisect
import cv2
import glob
import numpy as np
import sys
from ArgParser import parse_args
from GPSReader import GPSReader
from GPSTransforms import IMUTransforms, absoluteTransforms
from LaneMarkingHelper import get_transforms, mk2_to_mk1, BackProjector
from LidarTransforms import R_to_c_from_l, utc_from_gps_log_all
from VideoReader import VideoReader
class ImageClicker(object):
def __init__(self):
args = parse_args(sys.argv[1], sys.argv[2])
planar = glob.glob(sys.argv[1] + '/*_planar.npz')[0]
npz = np.load(planar)
self.planes = npz['planes']
(self.imu_transforms_mk1,
self.gps_data_mk1,
self.gps_times_mk1) = get_transforms(args, 'mark1')
(self.imu_transforms_mk2,
self.gps_data_mk2,
self.gps_times_mk2) = get_transforms(args, 'mark2')
self.back_projector = BackProjector(args)
self.vr = VideoReader(args['video'])
self.t = 1
cv2.namedWindow('image', cv2.WINDOW_AUTOSIZE)
cv2.setMouseCallback('image', self.mouseHandler)
self.lanes = None
self.markings = None
def mouseHandler(self, event, x, y, flags, param):
if event == cv2.EVENT_LBUTTONUP:
if self.markings == None:
self.markings = np.array([x, y])[np.newaxis]
else:
self.markings = np.vstack([self.markings, [x, y]])
pix = np.array([x, y, 1])
mk1_t = mk2_to_mk1(self.t, self.gps_times_mk1, self.gps_times_mk2)
xform = self.imu_transforms_mk1[mk1_t]
v = self.back_projector.calculateBackProjection(xform, pix)
l0 = self.back_projector.calculateBackProjection(xform)
l = l0 - v
best_model = (np.inf, 0, 0)
for i, plane in enumerate(self.planes):
pt = self.back_projector.calculateIntersection(l0, l,
plane)
d = np.linalg.norm(pt - plane[3:])
if d < best_model[0]:
best_model = (d, i, pt)
print best_model[-1]
if self.lanes == None:
self.lanes = best_model[-1]
else:
self.lanes = np.vstack((self.lanes, best_model[-1]))
def exportData(self, file_name):
lanes = {}
lanes['lane0'] = self.lanes
print 'saved:'
print self.lanes
np.savez(file_name, **lanes)
def nextFrame(self):
while True:
while self.vr.framenum < self.t:
success, I = self.vr.getNextFrame()
if self.markings != None:
x = self.markings[:, 0]
y = self.markings[:, 1]
for i in xrange(4):
I[y+i, x, :] = np.array([255, 255, 0])
I[y-i, x, :] = np.array([255, 255, 0])
I[y, x+i, :] = np.array([255, 255, 0])
I[y, x-i, :] = np.array([255, 255, 0])
cv2.imshow('image', I)
key = cv2.waitKey(1) & 0xFF
if key != 255:
print key
if key == 27: # esc
return
if key == 115: # s
self.exportData(sys.argv[1] + '/multilane_points_image.npz')
elif key == 32: # space
self.t += 20
self.markings = None
if __name__ == '__main__':
ic = ImageClicker()
ic.nextFrame()
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AMIS-30543 Example.py | capella-ben/microPython_AMIS-30543 | 0 | 173495 | # Wiring:
# Pico - AMIS-30543
# SPIO-RX - DO (4.7K pullup)
# SPIO-TX - DI
# SPIO-CSK - CLK
# 5 - CS
# 15 - NXT
# Ground - GND
#
# Also connect the motor power and the stepper driver.
from machine import Pin
import time
from AMIS30543 import AMIS30543
stepPin = 15
csPin = 5
myDriver = AMIS30543(csPin, stepPin)
myDriver.resetSettings()
myDriver.setCurrentMilliamps(myDriver.idleCurrent)
myDriver.setStepMode(myDriver.MicroStep4)
myDriver.enableDriver()
print("poistion:", myDriver.readPosition())
if myDriver.readThermalWarning():
print("Driver too hot!")
else:
print("Driver cool as a cucumber")
for i in range(1):
print("Iteration:", i)
myDriver.moveStepsAcc(200 * 4 * 1, 1000, 30, False, 1000)
myDriver.moveStepsAcc(200 * 4 * 5, 6000, 30, True, 1000)
myDriver.moveStepsAcc(200 * 4 * 2, 2000, 30, False, 1000)
myDriver.moveStepsAcc(200, 5000, 30, True, 800)
myDriver.moveStepsAcc(300, 5000, 30, False, 800)
myDriver.moveStepsAcc(400, 5000, 30, True, 800)
myDriver.moveStepsAcc(500, 5000, 30, False, 800)
time.sleep_ms(200)
print()
myDriver.disableDriver() | [
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] |
example_consumer/settings.py | open-craft/django-openid-auth | 11 | 129564 | # django-openid-auth - OpenID integration for django.contrib.auth
#
# Copyright (C) 2007 <NAME>
# Copyright (C) 2008-2013 Canonical Ltd.
#
# Redistribution and use in source and binary forms, with or without
# modification, are permitted provided that the following conditions
# are met:
#
# * Redistributions of source code must retain the above copyright
# notice, this list of conditions and the following disclaimer.
#
# * Redistributions in binary form must reproduce the above copyright
# notice, this list of conditions and the following disclaimer in the
# documentation and/or other materials provided with the distribution.
#
# THIS SOFTWARE IS PROVIDED BY THE COPYRIGHT HOLDERS AND CONTRIBUTORS
# "AS IS" AND ANY EXPRESS OR IMPLIED WARRANTIES, INCLUDING, BUT NOT
# LIMITED TO, THE IMPLIED WARRANTIES OF MERCHANTABILITY AND FITNESS
# FOR A PARTICULAR PURPOSE ARE DISCLAIMED. IN NO EVENT SHALL THE
# COPYRIGHT OWNER OR CONTRIBUTORS BE LIABLE FOR ANY DIRECT, INDIRECT,
# INCIDENTAL, SPECIAL, EXEMPLARY, OR CONSEQUENTIAL DAMAGES (INCLUDING,
# BUT NOT LIMITED TO, PROCUREMENT OF SUBSTITUTE GOODS OR SERVICES;
# LOSS OF USE, DATA, OR PROFITS; OR BUSINESS INTERRUPTION) HOWEVER
# CAUSED AND ON ANY THEORY OF LIABILITY, WHETHER IN CONTRACT, STRICT
# LIABILITY, OR TORT (INCLUDING NEGLIGENCE OR OTHERWISE) ARISING IN
# ANY WAY OUT OF THE USE OF THIS SOFTWARE, EVEN IF ADVISED OF THE
# POSSIBILITY OF SUCH DAMAGE.
"""
Django settings for example_consumer project.
For more information on this file, see
https://docs.djangoproject.com/en/1.7/topics/settings/
For the full list of settings and their values, see
https://docs.djangoproject.com/en/1.7/ref/settings/
"""
# Build paths inside the project like this: os.path.join(BASE_DIR, ...)
import os
import django
BASE_DIR = os.path.dirname(os.path.dirname(__file__))
# Quick-start development settings - unsuitable for production
# See https://docs.djangoproject.com/en/1.7/howto/deployment/checklist/
# SECURITY WARNING: keep the secret key used in production secret!
SECRET_KEY = '34958734985734985734985798437'
# SECURITY WARNING: don't run with debug turned on in production!
DEBUG = True
TEMPLATES = [
{
'BACKEND': 'django.template.backends.django.DjangoTemplates',
'DIRS': [],
'APP_DIRS': True,
'OPTIONS': {
'debug': True,
'context_processors': [
'django.contrib.auth.context_processors.auth',
'django.template.context_processors.debug',
'django.template.context_processors.i18n',
'django.template.context_processors.media',
'django.template.context_processors.static',
'django.template.context_processors.tz',
'django.contrib.messages.context_processors.messages',
]
}
}
]
ALLOWED_HOSTS = []
# https://docs.djangoproject.com/en/2.0/topics/http/middleware/#upgrading-pre-django-1-10-style-middleware
# SHIM: Old style (pre Django 1.10), can be removed, once Django 1.10 support is dropped
if django.VERSION < (1, 10):
MIDDLEWARE_CLASSES = (
'django.middleware.common.CommonMiddleware',
'django.contrib.sessions.middleware.SessionMiddleware',
'django.contrib.auth.middleware.AuthenticationMiddleware',
'django.middleware.csrf.CsrfViewMiddleware',
)
else:
MIDDLEWARE = [
'django.middleware.security.SecurityMiddleware',
'django.contrib.sessions.middleware.SessionMiddleware',
'django.middleware.common.CommonMiddleware',
'django.middleware.csrf.CsrfViewMiddleware',
'django.contrib.auth.middleware.AuthenticationMiddleware',
'django.contrib.messages.middleware.MessageMiddleware',
'django.middleware.clickjacking.XFrameOptionsMiddleware',
]
# Application definition
INSTALLED_APPS = (
'django.contrib.auth',
'django.contrib.contenttypes',
'django.contrib.sessions',
'django.contrib.admin',
'django_openid_auth',
)
if django.VERSION < (1, 7):
INSTALLED_APPS += ('south',)
ROOT_URLCONF = 'example_consumer.urls'
WSGI_APPLICATION = 'example_consumer.wsgi.application'
# Database
# https://docs.djangoproject.com/en/1.7/ref/settings/#databases
DATABASES = {
'default': {
'ENGINE': 'django.db.backends.sqlite3',
'NAME': os.path.join(BASE_DIR, 'db.sqlite3'),
}
}
# Internationalization
# https://docs.djangoproject.com/en/1.7/topics/i18n/
LANGUAGE_CODE = 'en-us'
TIME_ZONE = 'UTC'
USE_I18N = True
USE_TZ = True
# Static files (CSS, JavaScript, Images)
# https://docs.djangoproject.com/en/1.7/howto/static-files/
STATIC_URL = '/static/'
# the library python-openid does not support a json session serializer
# <openid.yadis.manager.YadisServiceManager> is not JSON serializable
# https://github.com/openid/python-openid/issues/17
SESSION_SERIALIZER = 'django.contrib.sessions.serializers.PickleSerializer'
AUTHENTICATION_BACKENDS = (
'django_openid_auth.auth.OpenIDBackend',
'django.contrib.auth.backends.ModelBackend',
)
# Should users be created when new OpenIDs are used to log in?
OPENID_CREATE_USERS = True
# When logging in again, should we overwrite user details based on
# data received via Simple Registration?
OPENID_UPDATE_DETAILS_FROM_SREG = True
# Map of OpenID Provider base URLs to recognised account verification schemes
# returned in response to a http://ns.login.ubuntu.com/2013/validation/account
# request. Use None as the key in place of a URL to specify verification
# schemes that will be trusted from unknown OpenID Providers (not recommended).
OPENID_VALID_VERIFICATION_SCHEMES = {
None: (),
}
# If set, always use this as the identity URL rather than asking the
# user. This only makes sense if it is a server URL.
OPENID_SSO_SERVER_URL = 'https://login.ubuntu.com/'
# Tell django.contrib.auth to use the OpenID signin URLs.
LOGIN_URL = '/openid/login/'
LOGIN_REDIRECT_URL = '/'
# Should django_auth_openid be used to sign into the admin interface?
OPENID_USE_AS_ADMIN_LOGIN = False
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] |
alembic/dev_seeds.py | ryanmahan/police-data-trust | 0 | 52950 | <gh_stars>0
from backend.database.core import db
from backend.database import User, UserRole
from backend.auth import user_manager
from backend.database.models.incident import Incident
from backend.database.models.officer import Officer
from backend.database.models.use_of_force import UseOfForce
def create_user(user):
user_exists = (
db.session.query(User).filter_by(email=user.email).first() is not None
)
if not user_exists:
user.create()
create_user(
User(
email="<EMAIL>",
password=<PASSWORD>("password"),
role=UserRole.PUBLIC,
first_name="Test",
last_name="Example",
)
)
create_user(
User(
email="<EMAIL>",
password=<PASSWORD>("password"),
role=UserRole.CONTRIBUTOR,
first_name="Contributor",
last_name="Example",
)
)
create_user(
User(
email="<EMAIL>",
password=<PASSWORD>("password"),
role=UserRole.ADMIN,
first_name="Admin",
last_name="Example",
)
)
create_user(
User(
email="<EMAIL>",
password=<PASSWORD>("password"),
role=UserRole.PASSPORT,
first_name="Passport",
last_name="Example",
)
)
def create_incident(key=1, date="10-01-2019"):
base_id = 10000000
id = base_id + key
incident = Incident(
id=id,
location=f"Test location {key}",
description=f"Test description {key}",
department=f"Small Police Department {key}",
time_of_incident=f"{date} 00:00:00",
officers=[
Officer(
first_name=f"TestFirstName {key}",
last_name=f"TestLastName {key}",
)
],
use_of_force=[UseOfForce(item=f"gunshot {key}")],
source="mpv",
)
exists = db.session.query(Incident).filter_by(id=id).first() is not None
if not exists:
incident.create()
create_incident(key=1, date="10-01-2019")
create_incident(key=2, date="11-01-2019")
create_incident(key=3, date="12-01-2019")
create_incident(key=4, date="03-15-2020")
create_incident(key=5, date="04-15-2020")
create_incident(key=6, date="08-10-2020")
create_incident(key=7, date="10-01-2020")
create_incident(key=8, date="10-15-2020")
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deepff/process.py | JunboLu/CP2K_kit | 16 | 41987 | #! /usr/env/bin python
import os
import linecache
import numpy as np
from collections import OrderedDict
from CP2K_kit.tools import call
from CP2K_kit.tools import data_op
from CP2K_kit.tools import file_tools
from CP2K_kit.tools import read_input
from CP2K_kit.tools import traj_info
from CP2K_kit.deepff import load_data
from CP2K_kit.deepff import gen_lammps_task
def get_sys_num(exe_dir):
'''
get_sys_num: get the number of systems
Args:
exe_dir: string
exe_dir is the directory where shell script will be excuted.
Returns:
sys_num: int
sys_num is the number of systems.
'''
cmd = "ls | grep %s" % ('sys_')
sys_num = len(call.call_returns_shell(exe_dir, cmd))
return sys_num
def get_data_num(exe_dir):
'''
get_data_num: get the number of data
Args:
exe_dir: string
exe_dir is the directory where shell script will be excuted.
Returns:
data_num: int
data_num is the number of data.
'''
cmd = "ls | grep %s" % ('data_')
data_num = len(call.call_returns_shell(exe_dir, cmd))
return data_num
def get_task_num(exe_dir, get_task_dir=False):
'''
get_task_num: get the number of tasks in a system
Args:
exe_dir: string
exe_dir is the directory where shell script will be excuted.
Returns:
task_num: int
task_num is the number of tasks in a system.
'''
cmd = "ls | grep %s" % ('task_')
task_dir = call.call_returns_shell(exe_dir, cmd)
task_num = len(task_dir)
if get_task_dir:
return task_num, task_dir
else:
return task_num
def get_lmp_model_num(exe_dir):
'''
get_lmp_model_num: get the number of models in lammps directory.
Args:
exe_dir: string
exe_dir is the directory where shell script will be excuted.
Returns:
model_num: int
model_num is the number of models in lammps directory.
'''
cmd = "ls | grep %s" % ("'model_[0-9]'")
model_num = len(call.call_returns_shell(exe_dir, cmd))
return model_num
def get_deepmd_model_num(exe_dir):
'''
get_deepmd_model_num: get the number of models in deepmd directory.
Args:
exe_dir: string
exe_dir is the directory where shell script will be excuted.
Returns:
model_num: int
model_num is the number of models in deepmd directory.
'''
model_num = len(call.call_returns_shell(exe_dir, "ls -ll |awk '/^d/ {print $NF}'"))
return model_num
def get_traj_num(exe_dir):
'''
get_traj_num: get the number of frames
Args:
exe_dir: string
exe_dir is the directory where shell script will be excuted.
Returns:
traj_num: int
traj_num is the number of frames.
'''
cmd = "ls | grep %s" % ('traj_')
traj_num = len(call.call_returns_shell(exe_dir, cmd))
return traj_num
def dump_input(work_dir, inp_file, f_key):
'''
dump_input: dump deepff input file, it will call read_input module.
Args:
work_dir: string
work_dir is the working directory of CP2K_kit.
inp_file: string
inp_file is the deepff input file
f_key: 1-d string list
f_key is fixed to: ['deepmd', 'lammps', 'cp2k', 'model_devi', 'environ']
Returns :
deepmd_dic: dictionary
deepmd_dic contains keywords used in deepmd.
lammps_dic: dictionary
lammpd_dic contains keywords used in lammps.
cp2k_dic: dictionary
cp2k_dic contains keywords used in cp2k.
model_devi_dic: dictionary
model_devi contains keywords used in model_devi.
environ_dic: dictionary
environ_dic contains keywords used in environment.
'''
job_type_param = read_input.dump_info(work_dir, inp_file, f_key)
deepmd_dic = job_type_param[0]
lammps_dic = job_type_param[1]
cp2k_dic = job_type_param[2]
active_learn_dic = job_type_param[3]
environ_dic = job_type_param[4]
return deepmd_dic, lammps_dic, cp2k_dic, active_learn_dic, environ_dic
def get_atoms_type(deepmd_dic):
'''
get_atoms_type: get atoms type for total systems
Args:
deepmd_dic: dictionary
deepmd_dic contains keywords used in deepmd.
Returns:
final_atoms_type: list
final_atoms_type is the atoms type for all systems.
Example: ['O', 'H']
'''
import linecache
atoms_type = []
train_dic = deepmd_dic['training']
for key in train_dic:
if ( 'system' in key ):
traj_coord_file = train_dic[key]['traj_coord_file']
line_num = file_tools.grep_line_num("'PDB file'", traj_coord_file, os.getcwd())
if ( line_num == 0 ):
coord_file_type = 'coord_xyz'
else:
coord_file_type = 'coord_pdb'
atoms_num, pre_base_block, end_base_block, pre_base, frames_num, each, start_id, end_id, time_step = \
traj_info.get_traj_info(traj_coord_file, coord_file_type)
atoms = []
for i in range(atoms_num):
line_i = linecache.getline(traj_coord_file, pre_base+pre_base_block+i+1)
line_i_split = data_op.split_str(line_i, ' ', '\n')
if ( coord_file_type == 'coord_xyz' ):
atoms.append(line_i_split[0])
elif ( coord_file_type == 'coord_pdb' ):
atoms.append(line_i_split[len(line_i_split)-1])
linecache.clearcache()
atoms_type.append(data_op.list_replicate(atoms))
tot_atoms_type = data_op.list_reshape(atoms_type)
final_atoms_type = data_op.list_replicate(tot_atoms_type)
return final_atoms_type
def dump_init_data(work_dir, deepmd_dic, train_stress, tot_atoms_type_dic):
'''
dump_init_data: load initial training data.
Args:
work_dir: string
work_dir is working directory of CP2K_kit.
deepmd_dic: dictionary
deepmd_dic contains keywords used in deepmd.
train_stress: bool
train_stress is whether we need to dump stress.
tot_atoms_type_dic: dictionary
tot_atoms_type_dic is the atoms type dictionary.
Returns:
init_train_data: 1-d string list
init_train_data contains initial training data directories.
init_data_num : int
init_data_num is the number of data for initial training.
'''
init_train_data_dir = ''.join((work_dir, '/init_train_data'))
if ( not os.path.exists(init_train_data_dir) ):
cmd = "mkdir %s" % ('init_train_data')
call.call_simple_shell(work_dir, cmd)
i = 0
init_train_data = []
init_data_num = 0
train_dic = deepmd_dic['training']
shuffle_data = train_dic['shuffle_data']
for key in train_dic:
if ( 'system' in key):
save_dir = ''.join((work_dir, '/init_train_data/data_', str(i)))
if ( not os.path.exists(save_dir) ):
cmd = "mkdir %s" % (save_dir)
call.call_simple_shell(work_dir, cmd)
init_train_data.append(save_dir)
cmd = "ls | grep %s" %("'set.'")
set_dir_name = call.call_returns_shell(save_dir, cmd)
choosed_num = train_dic[key]['choosed_frame_num']
data_num = []
if ( len(set_dir_name) > 0 ):
for set_dir in set_dir_name:
data_num_part = []
set_dir_abs = ''.join((save_dir, '/', set_dir))
coord_npy_file = ''.join((set_dir_abs, '/coord.npy'))
force_npy_file = ''.join((set_dir_abs, '/force.npy'))
box_npy_file = ''.join((set_dir_abs, '/box.npy'))
energy_npy_file = ''.join((set_dir_abs, '/energy.npy'))
if ( all(os.path.exists(npy_file) for npy_file in [coord_npy_file, force_npy_file, box_npy_file, energy_npy_file]) ):
for npy_file in [coord_npy_file, force_npy_file, box_npy_file, energy_npy_file]:
data_num_part.append(len(np.load(npy_file)))
else:
data_num_part = [0,0,0,0]
virial_npy_file = ''.join((set_dir_abs, '/virial.npy'))
if ( os.path.exists(virial_npy_file) ):
data_num_part.append(len(np.load(virial_npy_file)))
data_num.append(data_num_part)
else:
data_num = [[0,0,0,0]]
data_num = data_op.add_2d_list(data_num)
if ( all(j == choosed_num for j in data_num) ):
if ( len(set_dir_name) == 1 ):
init_data_num_part = choosed_num
else:
final_set_dir_abs = ''.join((save_dir, '/', set_dir_name[len(set_dir_name)-1]))
final_energy_npy_file = ''.join((final_set_dir_abs, '/energy.npy'))
init_data_num_part = choosed_num-len(np.load(final_energy_npy_file))
else:
traj_type = train_dic[key]['traj_type']
start = train_dic[key]['start_frame']
end = train_dic[key]['end_frame']
parts = train_dic[key]['set_parts']
if ( traj_type == 'md' ):
traj_coord_file = train_dic[key]['traj_coord_file']
traj_frc_file = train_dic[key]['traj_frc_file']
traj_cell_file = train_dic[key]['traj_cell_file']
traj_stress_file = train_dic[key]['traj_stress_file']
load_data.load_data_from_dir(traj_coord_file, traj_frc_file, traj_cell_file, traj_stress_file, \
train_stress, work_dir, save_dir, start, end, choosed_num, tot_atoms_type_dic)
elif ( traj_type == 'mtd' ):
data_dir = train_dic[key]['data_dir']
task_dir_prefix = train_dic[key]['task_dir_prefix']
proj_name = train_dic[key]['proj_name']
out_file_name = train_dic[key]['out_file_name']
choosed_index = data_op.gen_list(start, end, 1)
choosed_index_array = np.array(choosed_index)
np.random.shuffle(choosed_index_array)
choosed_index = list(choosed_index_array[0:choosed_num])
load_data.load_data_from_sepfile(data_dir, save_dir, task_dir_prefix, proj_name, tot_atoms_type_dic, \
sorted(choosed_index), out_file_name)
energy_array, coord_array, frc_array, box_array, virial_array = load_data.read_raw_data(save_dir)
init_data_num_part, init_test_data_num_part = load_data.raw_data_to_set(parts, shuffle_data, save_dir, energy_array, \
coord_array, frc_array, box_array, virial_array)
init_data_num = init_data_num+init_data_num_part
i = i+1
if ( 'set_data_dir' in train_dic.keys() ):
init_train_data.append(os.path.abspath(train_dic['set_data_dir']))
energy_npy_file = ''.join((os.path.abspath(train_dic['set_data_dir']), '/set.000/energy.npy'))
set_data_num = len(np.load(energy_npy_file))
init_data_num = init_data_num+set_data_num
return init_train_data, init_data_num
def check_deepff_run(work_dir, iter_id):
'''
check_deepff_run: check the running state of deepff
Args:
work_dir: string
work_dir is workding directory.
iter_id: int
iter_id is current iteration number.
Returns:
failure_model: 1-d int list
failure_model is the id of failure models.
'''
train_dir = ''.join((work_dir, '/iter_', str(iter_id), '/01.train'))
model_num = get_deepmd_model_num(train_dir)
failure_model = []
for i in range(model_num):
model_dir = ''.join((train_dir, '/', str(i)))
lcurve_file = ''.join((model_dir, '/lcurve.out'))
whole_line_num = len(open(lcurve_file).readlines())
choosed_line_num = int(0.1*whole_line_num)
start_line = whole_line_num-choosed_line_num
force_trn = []
for j in range(choosed_line_num):
line = linecache.getline(lcurve_file, start_line+j+1)
line_split = data_op.split_str(line, ' ')
if ( data_op.eval_str(line_split[0]) == 1 and len(line_split) >= 8 ):
force_trn.append(float(line_split[6]))
linecache.clearcache()
force_max = max(force_trn)
force_min = min(force_trn)
force_avg = np.mean(np.array(force_trn))
if ( ((force_max-force_min) >= 0.04 and force_max >= 0.08) or force_avg >= 0.08 ):
failure_model.append(i)
return failure_model
def get_md_sys_info(lmp_dic, tot_atoms_type_dic):
'''
get_md_sys_info: get the system information for lammps md.
Args:
lmp_dic: dictionary
lmp_dic contains parameters for lammps.
tot_atoms_type_dic: dictionary
tot_atoms_type_dic is the atoms type dictionary.
Returns:
sys_num: int
sys_num is the number of systems.
atoms_type_multi_sys: 2-d dictionary, dim = (num of lammps systems) * (num of atom types)
atoms_type_multi_sys is the atoms type for multi-systems.
example: {0:{'O':1,'H':2,'N':3},1:{'O':1,'S':2,'N':3}}
atoms_num_tot: dictionary
atoms_num_tot contains number of atoms for different systems.
Example: {0:3, 1:3}
use_mtd_tot: bool
use_mtd_tot is whethet using metadynamics for whole systems.
'''
atoms_type_multi_sys = []
atoms_num_tot = []
use_mtd_tot = []
sys_num = 0
for key in lmp_dic:
if 'system' in key:
sys_num = sys_num + 1
for i in range(sys_num):
sys = 'system' + str(i)
box_file_name = lmp_dic[sys]['box']
coord_file_name = lmp_dic[sys]['coord']
use_mtd = lmp_dic[sys]['use_mtd']
tri_cell_vec, atoms, x, y, z = gen_lammps_task.get_box_coord(box_file_name, coord_file_name)
atoms_type = data_op.list_replicate(atoms)
atoms_type_dic = OrderedDict()
for j in atoms_type:
if j in tot_atoms_type_dic.keys():
atoms_type_dic[j] = tot_atoms_type_dic[j]+1
else:
log_info.log_error('Input error: %s atom type in system %d is not trained, please check deepff/lammps/system' %(j, i))
exit()
atoms_type_multi_sys.append(atoms_type_dic)
atoms_num_tot.append(len(atoms))
use_mtd_tot.append(use_mtd)
return sys_num, atoms_type_multi_sys, atoms_num_tot, use_mtd_tot
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29918,
3972,
338,
1985,
3884,
310,
28505,
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29918,
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9933,
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11256,
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4804,
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474,
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29918,
1949,
353,
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29900,
13,
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7945,
29918,
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3487,
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26495,
2033,
13,
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528,
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363,
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297,
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29901,
13,
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5205,
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297,
1820,
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418,
4078,
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29914,
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742,
851,
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29875,
4961,
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418,
565,
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451,
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9933,
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7620,
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376,
11256,
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29908,
1273,
313,
7620,
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13,
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29918,
12857,
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15903,
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3972,
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9920,
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13,
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7620,
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376,
3137,
891,
12680,
1273,
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29908,
1273,
703,
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6169,
1159,
13,
418,
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3972,
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978,
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18280,
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7620,
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3972,
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9920,
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13,
418,
3060,
2662,
29918,
1949,
353,
7945,
29918,
27774,
29961,
1989,
22322,
1859,
2662,
29918,
2557,
29918,
1949,
2033,
13,
418,
848,
29918,
1949,
353,
5159,
13,
418,
565,
313,
7431,
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842,
29918,
3972,
29918,
978,
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1405,
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29900,
29871,
1125,
13,
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363,
731,
29918,
3972,
297,
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29918,
3972,
29918,
978,
29901,
13,
3986,
848,
29918,
1949,
29918,
1595,
353,
5159,
13,
3986,
731,
29918,
3972,
29918,
6897,
353,
525,
4286,
7122,
3552,
7620,
29918,
3972,
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8207,
742,
731,
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3972,
876,
13,
3986,
29311,
29918,
29876,
2272,
29918,
1445,
353,
525,
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3552,
842,
29918,
3972,
29918,
6897,
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8207,
1111,
536,
29889,
29876,
2272,
8785,
13,
3986,
4889,
29918,
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2272,
29918,
1445,
353,
525,
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3552,
842,
29918,
3972,
29918,
6897,
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8207,
10118,
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2272,
8785,
13,
3986,
3800,
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2272,
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3552,
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3972,
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6897,
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2272,
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13,
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5864,
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6897,
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599,
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359,
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9933,
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363,
302,
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29918,
1445,
297,
518,
1111,
536,
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2272,
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302,
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297,
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5864,
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5387,
13,
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1949,
29918,
1595,
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4397,
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2435,
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9302,
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1359,
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2272,
29918,
1445,
4961,
13,
3986,
1683,
29901,
13,
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1949,
29918,
1595,
353,
518,
29900,
29892,
29900,
29892,
29900,
29892,
29900,
29962,
13,
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3516,
9315,
29918,
29876,
2272,
29918,
1445,
353,
525,
4286,
7122,
3552,
842,
29918,
3972,
29918,
6897,
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8207,
1403,
9315,
29889,
29876,
2272,
8785,
13,
3986,
565,
313,
2897,
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2084,
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9933,
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1403,
9315,
29918,
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2272,
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1445,
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1125,
13,
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1949,
29918,
1595,
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4397,
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2435,
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9302,
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1359,
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1403,
9315,
29918,
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2272,
29918,
1445,
4961,
13,
3986,
848,
29918,
1949,
29889,
4397,
29898,
1272,
29918,
1949,
29918,
1595,
29897,
13,
418,
1683,
29901,
13,
4706,
848,
29918,
1949,
353,
5519,
29900,
29892,
29900,
29892,
29900,
29892,
29900,
5262,
13,
418,
848,
29918,
1949,
353,
848,
29918,
459,
29889,
1202,
29918,
29906,
29881,
29918,
1761,
29898,
1272,
29918,
1949,
29897,
13,
418,
565,
313,
599,
29898,
29926,
1275,
3060,
2662,
29918,
1949,
363,
432,
297,
848,
29918,
1949,
29897,
29871,
1125,
13,
4706,
565,
313,
7431,
29898,
842,
29918,
3972,
29918,
978,
29897,
1275,
29871,
29896,
29871,
1125,
13,
3986,
2069,
29918,
1272,
29918,
1949,
29918,
1595,
353,
3060,
2662,
29918,
1949,
13,
4706,
1683,
29901,
13,
3986,
2186,
29918,
842,
29918,
3972,
29918,
6897,
353,
525,
4286,
7122,
3552,
7620,
29918,
3972,
29892,
8207,
742,
731,
29918,
3972,
29918,
978,
29961,
2435,
29898,
842,
29918,
3972,
29918,
978,
6817,
29896,
12622,
13,
3986,
2186,
29918,
27548,
29918,
29876,
2272,
29918,
1445,
353,
525,
4286,
7122,
3552,
8394,
29918,
842,
29918,
3972,
29918,
6897,
29892,
8207,
27548,
29889,
29876,
2272,
8785,
13,
3986,
2069,
29918,
1272,
29918,
1949,
29918,
1595,
353,
3060,
2662,
29918,
1949,
29899,
2435,
29898,
9302,
29889,
1359,
29898,
8394,
29918,
27548,
29918,
29876,
2272,
29918,
1445,
876,
13,
418,
1683,
29901,
13,
4706,
1020,
29926,
29918,
1853,
353,
7945,
29918,
27774,
29961,
1989,
22322,
3018,
29926,
29918,
1853,
2033,
13,
4706,
1369,
353,
7945,
29918,
27774,
29961,
1989,
22322,
2962,
29918,
2557,
2033,
13,
4706,
1095,
353,
7945,
29918,
27774,
29961,
1989,
22322,
355,
29918,
2557,
2033,
13,
4706,
5633,
353,
7945,
29918,
27774,
29961,
1989,
22322,
842,
29918,
20895,
2033,
13,
4706,
565,
313,
1020,
29926,
29918,
1853,
1275,
525,
3487,
29915,
29871,
1125,
13,
3986,
1020,
29926,
29918,
1111,
536,
29918,
1445,
353,
7945,
29918,
27774,
29961,
1989,
22322,
3018,
29926,
29918,
1111,
536,
29918,
1445,
2033,
13,
3986,
1020,
29926,
29918,
1341,
29883,
29918,
1445,
353,
7945,
29918,
27774,
29961,
1989,
22322,
3018,
29926,
29918,
1341,
29883,
29918,
1445,
2033,
13,
3986,
1020,
29926,
29918,
3729,
29918,
1445,
353,
7945,
29918,
27774,
29961,
1989,
22322,
3018,
29926,
29918,
3729,
29918,
1445,
2033,
13,
3986,
1020,
29926,
29918,
710,
404,
29918,
1445,
353,
7945,
29918,
27774,
29961,
1989,
22322,
3018,
29926,
29918,
710,
404,
29918,
1445,
2033,
13,
3986,
2254,
29918,
1272,
29889,
1359,
29918,
1272,
29918,
3166,
29918,
3972,
29898,
3018,
29926,
29918,
1111,
536,
29918,
1445,
29892,
1020,
29926,
29918,
1341,
29883,
29918,
1445,
29892,
1020,
29926,
29918,
3729,
29918,
1445,
29892,
1020,
29926,
29918,
710,
404,
29918,
1445,
29892,
320,
13,
462,
462,
539,
7945,
29918,
710,
404,
29892,
664,
29918,
3972,
29892,
4078,
29918,
3972,
29892,
1369,
29892,
1095,
29892,
3060,
2662,
29918,
1949,
29892,
2025,
29918,
271,
4835,
29918,
1853,
29918,
27774,
29897,
13,
4706,
25342,
313,
1020,
29926,
29918,
1853,
1275,
525,
29885,
1594,
29915,
29871,
1125,
13,
3986,
848,
29918,
3972,
353,
7945,
29918,
27774,
29961,
1989,
22322,
1272,
29918,
3972,
2033,
13,
3986,
3414,
29918,
3972,
29918,
13506,
353,
7945,
29918,
27774,
29961,
1989,
22322,
7662,
29918,
3972,
29918,
13506,
2033,
13,
3986,
410,
29926,
29918,
978,
353,
7945,
29918,
27774,
29961,
1989,
22322,
20865,
29918,
978,
2033,
13,
3986,
714,
29918,
1445,
29918,
978,
353,
7945,
29918,
27774,
29961,
1989,
22322,
449,
29918,
1445,
29918,
978,
2033,
13,
3986,
3060,
2662,
29918,
2248,
353,
848,
29918,
459,
29889,
1885,
29918,
1761,
29898,
2962,
29892,
1095,
29892,
29871,
29896,
29897,
13,
3986,
3060,
2662,
29918,
2248,
29918,
2378,
353,
7442,
29889,
2378,
29898,
1859,
2662,
29918,
2248,
29897,
13,
3986,
7442,
29889,
8172,
29889,
845,
21897,
29898,
1859,
2662,
29918,
2248,
29918,
2378,
29897,
13,
3986,
3060,
2662,
29918,
2248,
353,
1051,
29898,
1859,
2662,
29918,
2248,
29918,
2378,
29961,
29900,
29901,
1859,
2662,
29918,
1949,
2314,
13,
3986,
2254,
29918,
1272,
29889,
1359,
29918,
1272,
29918,
3166,
29918,
19570,
1445,
29898,
1272,
29918,
3972,
29892,
4078,
29918,
3972,
29892,
3414,
29918,
3972,
29918,
13506,
29892,
410,
29926,
29918,
978,
29892,
2025,
29918,
271,
4835,
29918,
1853,
29918,
27774,
29892,
320,
13,
462,
462,
965,
12705,
29898,
1859,
2662,
29918,
2248,
511,
714,
29918,
1445,
29918,
978,
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13,
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5864,
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2378,
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29311,
29918,
2378,
29892,
1424,
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29918,
2378,
29892,
3800,
29918,
2378,
29892,
3516,
9315,
29918,
2378,
353,
2254,
29918,
1272,
29889,
949,
29918,
1610,
29918,
1272,
29898,
7620,
29918,
3972,
29897,
13,
4706,
2069,
29918,
1272,
29918,
1949,
29918,
1595,
29892,
2069,
29918,
1688,
29918,
1272,
29918,
1949,
29918,
1595,
353,
2254,
29918,
1272,
29889,
1610,
29918,
1272,
29918,
517,
29918,
842,
29898,
20895,
29892,
528,
21897,
29918,
1272,
29892,
4078,
29918,
3972,
29892,
5864,
29918,
2378,
29892,
320,
13,
462,
462,
462,
462,
18884,
29311,
29918,
2378,
29892,
1424,
29883,
29918,
2378,
29892,
3800,
29918,
2378,
29892,
3516,
9315,
29918,
2378,
29897,
13,
418,
2069,
29918,
1272,
29918,
1949,
353,
2069,
29918,
1272,
29918,
1949,
29974,
2344,
29918,
1272,
29918,
1949,
29918,
1595,
13,
418,
474,
353,
474,
29974,
29896,
13,
13,
29871,
565,
313,
525,
842,
29918,
1272,
29918,
3972,
29915,
297,
7945,
29918,
27774,
29889,
8149,
580,
29871,
1125,
13,
1678,
2069,
29918,
14968,
29918,
1272,
29889,
4397,
29898,
359,
29889,
2084,
29889,
370,
1028,
493,
29898,
14968,
29918,
27774,
1839,
842,
29918,
1272,
29918,
3972,
25901,
13,
1678,
5864,
29918,
29876,
2272,
29918,
1445,
353,
525,
4286,
7122,
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project/evaluate/views.py | ktzoulas/stateless-password-manager | 0 | 47157 | """
Contains the views of the 'evaluate' blueprint.
"""
# pylint: disable=invalid-name
from flask import Blueprint, render_template, request
from project.evaluate.forms import EvaluateForm
from project.evaluate.helpers import evaluate_pass
evaluate_blueprint = Blueprint('evaluate', __name__, url_prefix='/evaluate')
@evaluate_blueprint.route('/', methods=['GET', 'POST'])
def index():
""" TODO: add function docstring"""
power = None
form = EvaluateForm(request.form)
if form.validate_on_submit():
if form.password.data is not None and form.password.data != '':
power = evaluate_pass(form.password.data)
return render_template('evaluate/index.html', form=form, power=power,
breadcrumb=(('Home', 'main.index'), 'Evaluate'))
return render_template('evaluate/index.html', form=form,
breadcrumb=(('Home', 'main.index'), 'Evaluate'))
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iologik/e2210.py | shannon-jia/iologik | 0 | 15627 | import aiohttp
import asyncio
import async_timeout
import logging
from collections import namedtuple, deque
from .events import Events
from html.parser import HTMLParser
log = logging.getLogger(__name__)
class Parser(HTMLParser):
def handle_starttag(self, tag, attrs):
log.debug("Encountered a start tag: {}".format(tag))
def handle_endtag(self, tag):
log.debug("Encountered an end tag : {}".format(tag))
def handle_data(self, data):
log.debug("Encountered some data : {}".format(data))
if self.callback:
self.callback(data)
def set_callback(self, callback):
self.callback = callback
class E2210(object):
''' Moxa iologik E2210 module
12 inputs and 8 outputs
'''
MAX_INPUTS = 12
MAX_OUTPUTS = 8
GET_PATH = 'getParam.cgi'
SET_PATH = 'setParam.cgi'
SYS_INFO = ['DATE', 'TIME', 'IP', 'LOC', 'DESC',
'FWR_V', 'MOD_NAME', 'SN_NUM', 'MAC_ADDR']
def __init__(self, loop,
url=None,
events=None,
line=0,
addr=1,
handle_events=None):
self.loop = loop or None
self.url = url
self.line = line
self.addr = addr
self.events = events or Events()
self.parser = Parser()
self.parser.set_callback(self.received)
self.handle_events = handle_events
self.connection = None
self.changed = True
self.fail = True
self.command = namedtuple('Command', 'name method params completed')
self.setting = {'System': {},
'DIMode': ['DI' for i in range(self.MAX_INPUTS)],
'DIStatus': [0 for i in range(self.MAX_INPUTS)],
'DIFilter': [200 for i in range(self.MAX_INPUTS)],
'DOMode': ['DO' for i in range(self.MAX_OUTPUTS)],
'DOStatus': [1 for i in range(self.MAX_OUTPUTS)]
}
self.CMDS = {
'get_sys_info': ('get',
'&'.join(['{}=?'.format(i) for i in self.SYS_INFO])),
'get_di_mode': ('get',
'&'.join(['DIMode_{:02d}=?'.format(i) for i in range(self.MAX_INPUTS)])),
'set_di_mode': ('set',
'&'.join(['DIMode_{:02d}=0'.format(i) for i in range(self.MAX_INPUTS)])),
'get_di_status': ('get',
'&'.join(['DIStatus_{:02d}=?'.format(i) for i in range(self.MAX_INPUTS)])),
'set_di_filter_low': ('set',
'&'.join(['DIFilter_{:02d}={}'.format(i, self.setting['DIFilter'][i]) for i in range(0, self.MAX_OUTPUTS//2)])),
'set_di_filter_high': ('set',
'&'.join(['DIFilter_{:02d}={}'.format(i, self.setting['DIFilter'][i]) for i in range(self.MAX_OUTPUTS//2, self.MAX_OUTPUTS)])),
'get_do_mode': ('get',
'&'.join(['DOMode_{:02d}=?'.format(i) for i in range(self.MAX_OUTPUTS)])),
'set_do_mode': ('set',
'&'.join(['DOMode_{:02d}=0'.format(i) for i in range(self.MAX_OUTPUTS)])),
'get_do_status': ('get',
'&'.join(['DOStatus_{:02d}=?'.format(i) for i in range(self.MAX_OUTPUTS)])),
'set_do_status': ('set',
'&'.join(['DOStatus_{:02d}=1'.format(i) for i in range(self.MAX_OUTPUTS)])),
}
self.cmd_deque = deque()
for name in self.CMDS:
self.append_cmd(name)
# start to poll http server
self.restart_poll()
def poll(self):
pass
def do_output(self, addr, which, action, deadtime):
if which >= self.MAX_OUTPUTS or which < 0:
return
status = (action == 'Activate' and 0 or 1)
params = 'DOStatus_{:02d}={}'.format(which, status)
self.cmd_deque.appendleft(self.command('do_outputs',
'set', params, False))
def append_cmd(self, cmd_name=None):
cmd = self.CMDS.get(cmd_name)
if cmd:
self.cmd_deque.append(self.command(cmd_name,
cmd[0], cmd[1], False))
def received(self, data):
log.debug("Encountered some data : {}".format(data))
l = data.split('=')
if len(l) != 2:
return
reg = l[0]
val = l[1]
if reg in self.SYS_INFO:
self.setting['System'][reg] = val
elif reg.startswith('DIMode'):
n = int(reg.split('_')[1])
if n < 0 or n >= self.MAX_INPUTS:
return
self.setting['DIMode'][n] = (val == '0' and 'DI' or 'COUNTER')
elif reg.startswith('DIStatus'):
n = int(reg.split('_')[1])
if n < 0 or n >= self.MAX_INPUTS:
return
self.setting['DIStatus'][n] = (val == '0' and 'ALARM' or 'NORMAL')
event_type = 'Auxiliary Input'
event = 'MXI_{}_{}_{}'.format(self.line, self.addr, n)
condition = (val == '0' and True or False)
self.events.append(event, event_type, condition)
elif reg.startswith('DIFilter'):
n = int(reg.split('_')[1])
if n < 0 or n >= self.MAX_INPUTS:
return
self.setting['DIFilter'][n] = int(val)
elif reg.startswith('DOMode'):
n = int(reg.split('_')[1])
if n < 0 or n >= self.MAX_OUTPUTS:
return
self.setting['DOMode'][n] = (val == '0' and 'DO' or 'PULSE')
elif reg.startswith('DOStatus'):
n = int(reg.split('_')[1])
if n < 0 or n >= self.MAX_OUTPUTS:
return
self.setting['DOStatus'][n] = (val == '0' and 'OFF' or 'ON')
else:
log.warn("Do not care it: {}".format(data))
def processor(self):
if not self.events:
return
if callable(self.handle_events):
return self.handle_events(self.events)
else:
log.warn('No master to processor {}'.format(self.events))
def restart_poll(self):
asyncio.ensure_future(self.loop_polling())
async def _fetch(self, params, method='get'):
endpoint = (method == 'get' and self.GET_PATH or self.SET_PATH)
async with aiohttp.ClientSession() as session:
with async_timeout.timeout(20):
async with session.get('{}/{}?{}'.format(self.url,
endpoint,
params)) as response:
if response.status >= 200 and response.status <= 300:
self.parser.feed(await response.text())
async def _request(self):
try:
self.cmd = self.cmd_deque.popleft()
except IndexError:
self.append_cmd('get_di_status')
self.append_cmd('get_do_status')
self.cmd = self.cmd_deque.popleft()
log.debug('Request: {}'.format(self.cmd.name))
x = await self._fetch(self.cmd.params,
method=self.cmd.method)
async def loop_polling(self):
try:
while True:
try:
await self._request()
self.connection = True
self.processor()
except Exception as err:
log.error("Cmd {} failed, with Error: {} "
"Will retry in {} seconds"
.format(self.cmd.name, err, 10))
self.connection = False
if self.connection is not True:
self.changed = True
self.cmd_deque.append(self.cmd)
self.fail = True
await asyncio.sleep(10)
else:
self.changed = False
self.fail = False
log.info("{} Successfully requested. ".format(self.cmd.name))
# poll connection state every 1s
await asyncio.sleep(0.5)
except asyncio.CancelledError:
self.connection = False
except Exception as err:
log.error("Failed to access http server with Error: {}".format(err))
self.connection = False
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] |
mission/constants/teagle.py | cuauv/software | 70 | 51976 | from mission.constants.missions import Gate, Path
from conf.vehicle import is_mainsub
HYDROPHONES_PINGER_DEPTH = 3.0
NONSURFACE_MIN_DEPTH = 0.6
# gate = Gate(
# depth=1.0,
# initial_approach_target_percent_of_screen=.45,
# gate_width_threshold=0.4,
# pre_spin_charge_dist=16 if is_mainsub else 12,
# spin_charge_dist=16 if is_mainsub else 12,
# post_spin_charge_dist=16 if is_mainsub else 12
# )
path = Path(
depth=1.0,
search_forward=6 if is_mainsub else 2,
search_stride = 10 if is_mainsub else 8,
search_right_first=True,
search_speed=0.1,
post_dist=2.5,
failure_back_up_dist=0.5 if is_mainsub else 0.1,
failure_back_up_speed=0.2 if is_mainsub else 0.1,
)
#dice = Dice(
# depth=3.3,
# max_depth=4,
# search_forward=3,
# search_stride=8,
# search_speed=0.1,
# min_dot_radius=0.03,
# ram_dist=1.0,
# ram_speed=0.1,
# rammed_back_up_timeout=20,
# lost_sight_back_up_timeout=5,
# search_default_zero_timeout=60,
#)
#
#highway = Highway(
# high_depth=1.0,
# low_depth=1.2,
# dist=6 if is_mainsub else 2,
# speed=0.4 if is_mainsub else 0.2,
#)
#
#track = Track(
# depth=1.6,
# slow_down_dist=5,
# max_speed=0.3 if is_mainsub else 0.2,
# min_speed=0.1,
# vision_frame_period=0.5,
#)
#
#roulette = Roulette(
# depth_search=1.0,
# depth_realign=2.5,
# depth_drop=3.0,
# heading_offset=30,
#)
#
#cash_in = CashIn(
# approach_funnel_depth=0.5,
# drop_approach_dist=0.2,
# # (right, left)
# drop_dvl_forward_correct_dist=(0.1, -0.13),
# drop_heading_correct=(0, -7),
# pick_up_both_depth=1.0,
# pick_up_search_depth_1=2.0,
# pick_up_search_depth_2=2.25,
# pick_up_search_depth_3=2.5,
# pick_up_start_follow_depth=3.2,
# attempt_surface_depth=-1,
# attempt_funnel_depth=0,
#)
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] |
built-in/MindSpore/Official/cv/detection/MaskRCNN_for_MindSpore/infer/sdk/main.py | Ascend/modelzoo | 12 | 69935 | <gh_stars>10-100
# Copyright 2021 Huawei Technologies Co., Ltd
#
# Licensed under the Apache License, Version 2.0 (the "License");
# you may not use this file except in compliance with the License.
# You may obtain a copy of the License at
#
# http://www.apache.org/licenses/LICENSE-2.0
#
# Unless required by applicable law or agreed to in writing, software
# distributed under the License is distributed on an "AS IS" BASIS,
# WITHOUT WARRANTIES OR CONDITIONS OF ANY KIND, either express or implied.
# See the License for the specific language governing permissions and
# limitations under the License.
# ============================================================================
import argparse
import json
import logging
import os
import time
import cv2
import mmcv
import numpy as np
from PIL import Image
from api.draw_predict import draw_label
from api.infer import SdkApi
from config import config as cfg
from eval.eval_by_sdk import get_eval_result
def parser_args():
parser = argparse.ArgumentParser(description="maskrcnn inference")
parser.add_argument("--img_path",
type=str,
required=True,
help="image directory.")
parser.add_argument(
"--pipeline_path",
type=str,
required=False,
default="config/maskrcnn_ms.pipeline",
help="image file path. The default is 'config/maskrcnn_ms.pipeline'. ")
parser.add_argument(
"--model_type",
type=str,
required=False,
default="dvpp",
help=
"rgb: high-precision, dvpp: high performance. The default is 'dvpp'.")
parser.add_argument(
"--infer_mode",
type=str,
required=False,
default="infer",
help=
"infer:only infer, eval: accuracy evaluation. The default is 'infer'.")
parser.add_argument(
"--infer_result_dir",
type=str,
required=False,
default="../data/infer_result",
help=
"cache dir of inference result. The default is '../data/infer_result'."
)
parser.add_argument("--ann_file",
type=str,
required=False,
help="eval ann_file.")
args = parser.parse_args()
return args
def get_img_metas(file_name):
img = Image.open(file_name)
img_size = img.size
org_width, org_height = img_size
resize_ratio = cfg.MODEL_WIDTH / org_width
if resize_ratio > cfg.MODEL_HEIGHT / org_height:
resize_ratio = cfg.MODEL_HEIGHT / org_height
img_metas = np.array([img_size[1], img_size[0]] +
[resize_ratio, resize_ratio])
return img_metas
def convert_result(result, img_metas):
bboxes = result.get("MxpiObject")
for i, bbox in enumerate(bboxes):
mask_width = bbox["imageMask"]["shape"][1]
mask_height = bbox["imageMask"]["shape"][0]
mask_str = bbox["imageMask"]["data"]
mask = [1 if i == '1' else 0 for i in mask_str]
mask = np.array(mask)
mask = mask.reshape((mask_height, mask_width)).astype('float32')
bbox['x0'] = max(min(bbox['x0'], img_metas[1] - 1), 0)
bbox['x1'] = max(min(bbox['x1'], img_metas[1] - 1), 0)
bbox['y0'] = max(min(bbox['y0'], img_metas[0] - 1), 0)
bbox['y1'] = max(min(bbox['y1'], img_metas[0] - 1), 0)
# rescale mask
w = int(max(bbox['x1'] - bbox['x0'] + 1, 1))
h = int(max(bbox['y1'] - bbox['y0'] + 1, 1))
bbox["imageMask"]["shape"] = [h, w]
mask = mmcv.imresize(mask, (w, h))
print(
f"Image_metas: {img_metas}, shape:{mask.shape}, "
f"bbox_shape: {bbox['imageMask']['shape']}, ori_shape: {(mask_height, mask_width)}"
)
mask_str = ''.join(['1' if i else '0' for i in mask.flatten()])
bbox['imageMask']['data'] = mask_str
return result
def process_img(img_file):
img = cv2.imread(img_file)
model_img = mmcv.imrescale(img, (cfg.MODEL_WIDTH, cfg.MODEL_HEIGHT))
if model_img.shape[0] > cfg.MODEL_HEIGHT:
model_img = mmcv.imrescale(model_img,
(cfg.MODEL_HEIGHT, cfg.MODEL_HEIGHT))
pad_img = np.zeros(
(cfg.MODEL_HEIGHT, cfg.MODEL_WIDTH, 3)).astype(model_img.dtype)
pad_img[0:model_img.shape[0], 0:model_img.shape[1], :] = model_img
pad_img.astype(np.float16)
return pad_img
def image_inference(pipeline_path, stream_name, img_dir, result_dir,
replace_last, model_type):
sdk_api = SdkApi(pipeline_path)
if not sdk_api.init():
exit(-1)
if not os.path.exists(result_dir):
os.makedirs(result_dir)
img_data_plugin_id = 0
img_metas_plugin_id = 1
print(f"\nBegin to inference for {img_dir}.\n\n")
file_list = os.listdir(img_dir)
total_len = len(file_list)
for img_id, file_name in enumerate(file_list):
if not file_name.lower().endswith((".jpg", "jpeg")):
continue
file_path = os.path.join(img_dir, file_name)
save_path = os.path.join(result_dir,
f"{os.path.splitext(file_name)[0]}.json")
if not replace_last and os.path.exists(save_path):
print(
f"The infer result json({save_path}) has existed, will be skip."
)
continue
try:
if model_type == 'dvpp':
with open(file_path, "rb") as fp:
data = fp.read()
sdk_api.send_data_input(stream_name, img_data_plugin_id, data)
else:
img_np = process_img(file_path)
sdk_api.send_img_input(stream_name,
img_data_plugin_id, "appsrc0",
img_np.tobytes(), img_np.shape)
# set image data
img_metas = get_img_metas(file_path).astype(np.float16)
sdk_api.send_tensor_input(stream_name, img_metas_plugin_id,
"appsrc1", img_metas.tobytes(), [1, 4],
cfg.TENSOR_DTYPE_FLOAT16)
start_time = time.time()
result = sdk_api.get_result(stream_name)
end_time = time.time() - start_time
result = convert_result(result, img_metas)
with open(save_path, "w") as fp:
fp.write(json.dumps(result))
print(
f"End-2end inference, file_name: {file_path}, {img_id + 1}/{total_len}, elapsed_time: {end_time}.\n"
)
draw_label(save_path, file_path, result_dir)
except Exception as ex:
logging.exception("Unknown error, msg(%s).", ex)
if __name__ == "__main__":
args = parser_args()
replace_last = True
stream_name = cfg.STREAM_NAME.encode("utf-8")
image_inference(args.pipeline_path, stream_name, args.img_path,
args.infer_result_dir, replace_last, args.model_type)
if args.infer_mode == "eval":
print("Infer end.")
print("Begin to eval...")
get_eval_result(args.ann_file, args.img_path, args.infer_result_dir)
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setup.py | acocac/scivision-test-plugin | 0 | 193317 | <gh_stars>0
#!/usr/bin/env python
from setuptools import find_packages, setup
requirements = []
with open("requirements.txt") as f:
for line in f:
stripped = line.split("#")[0].strip()
if len(stripped) > 0:
requirements.append(stripped)
setup(
name="scivision_test_plugin",
version="0.0.1",
description="scivision test plugin",
author="<NAME>",
author_email="<EMAIL>",
url="https://github.com/quantumjot/scivision-test-plugin",
packages=find_packages(),
install_requires=requirements,
python_requires=">=3.7",
)
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ssd/modeling/backbone/backbone_cfg.py | xu-peng-tao/SSD-Pruning-and-quantization | 19 | 46336 | # !/usr/bin/env python
# coding:utf-8
# Author:XuPengTao
# Date: 2020/3/14
from ssd.layers import L2Norm
import torch.nn.functional as F
import torch.nn as nn
import torch
from ssd.modeling import registry
import os
import quantization.WqAq.dorefa.models.util_wqaq as dorefa
import quantization.WqAq.IAO.models.util_wqaq as IAO
import quantization.WbWtAb.models.util_wt_bab as BWN
def fuse_conv_and_bn(conv, bn):
# https://tehnokv.com/posts/fusing-batchnorm-and-conv/
with torch.no_grad():
# init
fusedconv = torch.nn.Conv2d(conv.in_channels,
conv.out_channels,
kernel_size=conv.kernel_size,
stride=conv.stride,
padding=conv.padding,
dilation=conv.dilation,
groups=conv.groups,
bias=True)
# prepare filters
w_conv = conv.weight.clone().view(conv.out_channels, -1)
w_bn = torch.diag(bn.weight.div(torch.sqrt(bn.eps + bn.running_var)))
fusedconv.weight.copy_(torch.mm(w_bn, w_conv).view(fusedconv.weight.size()))
# prepare spatial bias
if conv.bias is not None:
b_conv = conv.bias
else:
b_conv = torch.zeros(conv.weight.size(0)).cuda()
b_bn = bn.bias - bn.weight.mul(bn.running_mean).div(torch.sqrt(bn.running_var + bn.eps))
fusedconv.bias.copy_(bn.weight.mul(b_conv).div(torch.sqrt(bn.running_var + bn.eps))+ b_bn)
return fusedconv
class Swish(nn.Module):
def __init__(self):
super(Swish, self).__init__()
def forward(self, x):
return x * torch.sigmoid(x)
class relu6(nn.Module):
def __init__(self):
super(relu6, self).__init__()
def forward(self, x):
return F.relu6(x, inplace=True)
class h_swish(nn.Module):
def __init__(self):
super(h_swish, self).__init__()
def forward(self, x):
return x * (F.relu6(x + 3.0, inplace=True) / 6.0)
class h_sigmoid(nn.Module):
def __init__(self):
super(h_sigmoid, self).__init__()
def forward(self, x):
out = F.relu6(x + 3.0, inplace=True) / 6.0
return out
class SE(nn.Module):
def __init__(self, channel, reduction=4):
super(SE, self).__init__()
self.avg_pool = nn.AdaptiveAvgPool2d(1)
self.fc = nn.Sequential(
nn.Linear(channel, channel // reduction, bias=False),
nn.ReLU(inplace=True),
nn.Linear(channel // reduction, channel, bias=False),
h_sigmoid()
# nn.Sigmoid()
)
def forward(self, x):
b, c, _, _ = x.size()
y = self.avg_pool(x).view(b, c)
y = self.fc(y).view(b, c, 1, 1)
return x * y.expand_as(x)
class Backbone(nn.Module):
def __init__(self, cfg):
super().__init__()
self.quan_type = cfg.QUANTIZATION.TYPE
if self.quan_type == 'dorefa':
self.quan_conv = dorefa.Conv2d_Q
self.wbits = cfg.QUANTIZATION.WBITS
self.abits = cfg.QUANTIZATION.ABITS
elif self.quan_type == 'IAO':
self.quan_conv_bn = IAO.BNFold_Conv2d_Q # BN融合训练
self.quan_conv = IAO.Conv2d_Q
self.wbits = cfg.QUANTIZATION.WBITS
self.abits = cfg.QUANTIZATION.ABITS
elif self.quan_type =='BWN':
self.quan_conv = BWN.Conv2d_Q
self.wbits = cfg.QUANTIZATION.WBITS
self.abits = cfg.QUANTIZATION.ABITS
if self.abits!=2: #这里2不表示2位,表示二值
print('激活未量化')
if self.wbits!=2 and self.wbits!=3:
print('权重未量化')
self.module_defs = self.parse_model_cfg(cfg.MODEL.BACKBONE.CFG)
self.module_list, self.l2_norm_index,self.features,self.l2_norm,self.routs= self.create_backbone(cfg,self.module_defs)
self.reset_parameters()
def parse_model_cfg(self,path):
# Parses the ssd layer configuration file and returns module definitions
# print(os.getcwd())#绝对路径
# print(os.path.abspath(os.path.join(os.getcwd(), "../../.."))) #获取上上上级目录
# file = open(os.path.join(os.path.abspath(os.path.join(os.getcwd(), "../../..")),path), 'r') #测试本文件时使用
file=open(path,'r')
lines = file.read().split('\n')
lines = [x for x in lines if x and not x.startswith('#')]
lines = [x.rstrip().lstrip() for x in lines] # get rid of fringe whitespaces
mdefs = [] # module definitions
for line in lines:
if line.startswith('['): # This marks the start of a new block
mdefs.append({})
mdefs[-1]['type'] = line[1:-1].rstrip()
if mdefs[-1]['type'] == 'convolutional' or mdefs[-1]['type'] == 'depthwise':
mdefs[-1]['batch_normalize'] = '0' # pre-populate with zeros (may be overwritten later)
mdefs[-1]['feature'] = 'no'
mdefs[-1]['dilation'] = '1'
mdefs[-1]['bias'] = '1'
mdefs[-1]['quantization'] = '0'
else:
mdefs[-1]['feature'] = 'no'
else:
key, val = line.split("=")
key = key.rstrip()
mdefs[-1][key] = val.strip()
return mdefs
def create_backbone(self,cfg, module_defs):
# Constructs module list of layer blocks from module configuration in module_defs
output_filters = [int(cfg.INPUT.CHANNELS)]
module_list = nn.ModuleList()
features = [] # list of layers which rout to detection layes
routs = [] # list of layers which rout to deeper layes
l2_norm_index = 0
l2_norm = 0
for i, mdef in enumerate(module_defs):
modules = nn.Sequential()
# print(mdef)
if mdef['type'] == 'convolutional':
bn = int(mdef['batch_normalize'])
quantization = int(mdef['quantization'])
filters = int(mdef['filters'])
kernel_size = int(mdef['size'])
pad = int(mdef['pad'])
if mdef['bias']=='1':
bias=True
else:
bias=False
if quantization == 0:
modules.add_module('Conv2d', nn.Conv2d(in_channels=output_filters[-1],
out_channels=filters,
kernel_size=kernel_size,
stride=int(mdef['stride']),
padding=pad,
dilation=int(mdef['dilation']),bias=bias))
if bn:
modules.add_module('BatchNorm2d', nn.BatchNorm2d(filters, momentum=0.1))
elif self.quan_type=='dorefa':
# print('Q')
modules.add_module('Conv2d', self.quan_conv(in_channels=output_filters[-1],
out_channels=filters,
kernel_size=kernel_size,
stride=int(mdef['stride']),
padding=pad,
dilation=int(mdef['dilation']),
a_bits=self.abits,
w_bits=self.wbits,bias=bias))
if bn:
modules.add_module('BatchNorm2d', nn.BatchNorm2d(filters, momentum=0.1))
elif self.quan_type=='IAO':
if bn:
modules.add_module('Conv2d', self.quan_conv_bn(in_channels=output_filters[-1],
out_channels=filters,
kernel_size=kernel_size,
stride=int(mdef['stride']),
padding=pad,
dilation=int(mdef['dilation']),
a_bits=self.abits,
w_bits=self.wbits,bias=False))##BN_fold这一版默认没有bias #默认对称量化 量化零点为0
else:
modules.add_module('Conv2d', self.quan_conv(in_channels=output_filters[-1],
out_channels=filters,
kernel_size=kernel_size,
stride=int(mdef['stride']),
padding=pad,
dilation=int(mdef['dilation']),
a_bits=self.abits,
w_bits=self.wbits,bias=bias))
elif self.quan_type=='BWN':
modules.add_module('Conv2d', self.quan_conv(in_channels=output_filters[-1],
out_channels=filters,
kernel_size=kernel_size,
stride=int(mdef['stride']),
padding=pad,
dilation=int(mdef['dilation']),
A=self.abits,
W=self.wbits, bias=bias))
if bn:
modules.add_module('BatchNorm2d', nn.BatchNorm2d(filters, momentum=0.1))
if mdef['activation'] == 'leaky':
modules.add_module('activation', nn.LeakyReLU(0.1, inplace=True))
elif mdef['activation'] == 'relu':
modules.add_module('activation', nn.ReLU(inplace=True))
elif mdef['activation'] == 'relu6':
modules.add_module('activation', relu6())
elif mdef['activation'] == 'h_swish':
modules.add_module('activation', h_swish())
elif mdef['type'] == 'depthwise':
bn = int(mdef['batch_normalize'])
filters = int(mdef['filters'])
kernel_size = int(mdef['size'])
pad = int(mdef['pad'])
quantization = int(mdef['quantization'])
if mdef['bias'] == '1':
bias = True
else:
bias = False
if quantization == 0:
modules.add_module('DepthWise2d', nn.Conv2d(in_channels=output_filters[-1],
out_channels=filters,
kernel_size=kernel_size,
stride=int(mdef['stride']),
padding=pad,
groups=output_filters[-1],
dilation=int(mdef['dilation']), bias=bias))
if bn:
modules.add_module('BatchNorm2d', nn.BatchNorm2d(filters, momentum=0.1))
elif self.quan_type=='dorefa':
# print('Q')
modules.add_module('DepthWise2d', self.quan_conv(in_channels=output_filters[-1],
out_channels=filters,
kernel_size=kernel_size,
stride=int(mdef['stride']),
padding=pad,
dilation=int(mdef['dilation']),
groups=output_filters[-1],
a_bits=self.abits,
w_bits=self.wbits,bias=bias))
if bn:
modules.add_module('BatchNorm2d', nn.BatchNorm2d(filters, momentum=0.1))
elif self.quan_type=='IAO':
if bn:
modules.add_module('Conv2d', self.quan_conv_bn(in_channels=output_filters[-1],
out_channels=filters,
kernel_size=kernel_size,
stride=int(mdef['stride']),
padding=pad,
dilation=int(mdef['dilation']),
groups=output_filters[-1],
a_bits=self.abits,
w_bits=self.wbits,bias=False))##BN_fold这一版默认没有bias #默认对称量化 量化零点为0
else:
modules.add_module('Conv2d', self.quan_conv(in_channels=output_filters[-1],
out_channels=filters,
kernel_size=kernel_size,
stride=int(mdef['stride']),
padding=pad,
groups=output_filters[-1],
dilation=int(mdef['dilation']),
a_bits=self.abits,
w_bits=self.wbits,bias=bias))
elif self.quan_type=='BWN':
modules.add_module('Conv2d', self.quan_conv(in_channels=output_filters[-1],
out_channels=filters,
kernel_size=kernel_size,
stride=int(mdef['stride']),
padding=pad,
dilation=int(mdef['dilation']),
groups=output_filters[-1],
A=self.abits,
W=self.wbits, bias=bias))
if bn:
modules.add_module('BatchNorm2d', nn.BatchNorm2d(filters, momentum=0.1))
if mdef['activation'] == 'leaky':
modules.add_module('activation', nn.LeakyReLU(0.1, inplace=True))
elif mdef['activation'] == 'relu':
modules.add_module('activation', nn.ReLU(inplace=True))
elif mdef['activation'] == 'relu6':
modules.add_module('activation', relu6())
elif mdef['activation'] == 'h_swish':
modules.add_module('activation', h_swish())
#不能加else 会影响linear不激活
elif mdef['type'] == 'shortcut': # nn.Sequential() placeholder for 'shortcut' layer
layer = int(mdef['from'])
filters = output_filters[layer]
routs.extend([i + layer if layer < 0 else layer])
elif mdef['type'] == 'maxpool':
kernel_size = int(mdef['size'])
stride = int(mdef['stride'])
ceil_mode = True if int(mdef['ceil_mode']) else False
maxpool = nn.MaxPool2d(kernel_size=kernel_size, stride=stride, padding=int(mdef['pad']),
ceil_mode=ceil_mode)#https://www.cnblogs.com/xxxxxxxxx/p/11529343.html ceilmode
modules = maxpool
else:
print("Error type!")
raise Exception
if mdef['feature'] == 'linear': # 传入预测层
features.append(i)
elif mdef['feature'] == 'l2_norm':
features.append(i)
l2_norm_index = i
l2_norm = L2Norm(filters)
# Register module list and number of output filters
module_list.append(modules)
output_filters.append(filters)
return module_list, l2_norm_index, features, l2_norm,routs
def reset_parameters(self):
for m in self.module_list.modules():
if isinstance(m, nn.Conv2d):
nn.init.kaiming_uniform_(m.weight)
if m.bias is not None:
nn.init.zeros_(m.bias)
def forward(self, x):
layer_outputs = []
features=[]
for i, (mdef, module) in enumerate(zip(self.module_defs, self.module_list)):
mtype = mdef['type']
if mtype in ['convolutional', 'depthwise', 'se', 'upsample', 'maxpool']:
x = module(x)#过卷积、激活
# #打印中间输出
# import numpy as np
# import sys
# np.set_printoptions(threshold=sys.maxsize) # 全部输出,无省略号
# np.set_printoptions(suppress=True) # 不用指数e
# print(x.shape)
# # print(x.cpu().numpy())
# np.savetxt(f'fpga/{i}_{x.shape}.txt', x.flatten().cpu().numpy())
#
# #模拟fpga量化特征值
# # 给你一个weight.txt和bias.txt的float型数据
# # 跑你现在的ssd网络,针对每一层的输出特征,进行量化(找到这一层的最大值(因为是relu,所以最小值可以不管)之后最大值如果是56,可以用2 ^ 6
# # 表示,那么这一层的数同时乘以再除以2 ^ 9(此处用short型或者int16型,之后传到下一层))
# max=torch.max(x)
# # print(max)
# for bit in range(15):#16bit量化 符号位占一位
# if max<pow(2,bit):
# zhengshu=bit#整数部分用几位
# break
# xiaoshu=15-zhengshu
# # print(xiaoshu)
# # print((x*torch.tensor([pow(2,xiaoshu)]).cuda()).int().float())
# x=(x*torch.tensor([pow(2,xiaoshu)]).cuda()).int().float()/torch.tensor([pow(2,xiaoshu)]).cuda()
# # print(x_copy-x)
#
# print('max:')
# print(torch.max(x))
#########
elif mtype == 'shortcut':
x = x + layer_outputs[int(mdef['from'])]
layer_outputs.append(x if i in self.routs else [])
if i in self.features:
if i!=self.l2_norm_index:
features.append(x)
else:#l2_norm
feature=self.l2_norm(x)
features.append(feature)
return tuple(features)
def bn_fuse(self):
#dilation应该不影响bn融合
# Fuse Conv2d + BatchNorm2d layers throughout model BN融合
fused_list = nn.ModuleList()
# print(list(self.children())[0])#module_list
for a in list(self.children())[0]:
# print(a)
if isinstance(a, nn.Sequential):
for i, b in enumerate(a):
if isinstance(b, nn.modules.batchnorm.BatchNorm2d):
# print(1)
# # fuse this bn layer with the previous conv2d layer
# print(a[i-1])
# print(b)
# print(*list(a.children())[i + 1:])
conv = a[i - 1]
fused = fuse_conv_and_bn(conv, b)
a = nn.Sequential(fused, *list(a.children())[i + 1:])
break
fused_list.append(a)
self.module_list = fused_list
@registry.BACKBONES.register('cfg_backbone')
def cfg_backbone(cfg, pretrained=True):
model = Backbone(cfg)
if pretrained:
# print('Load pretrained model from {}'.format(cfg.MODEL.BACKBONE.WEIGHTS))
state = torch.load(cfg.MODEL.BACKBONE.WEIGHTS)
if cfg.MODEL.BACKBONE.WEIGHTS.find('ssd') >= 0: #在检测数据集(voc\coco)上的预训练模型,加载全部backbone
if 'model' in state.keys():
state = state['model']
name_list = list(state.keys())
num = 0
for i, (mdef, module) in enumerate(zip(model.module_defs, model.module_list)):
if mdef['type'] == 'convolutional' or mdef['type'] == 'depthwise':
conv_layer = module[0]
conv_layer.weight.data.copy_(state[name_list[num]])
num = num + 1
if conv_layer.bias is not None:
conv_layer.bias.data.copy_(state[name_list[num]])
##可能之前的全精度权重有bias,IAO没有
if mdef['bias']=='1':
num=num+1
if mdef['batch_normalize'] == '1':
if isinstance(conv_layer, IAO.BNFold_Conv2d_Q): # iIAO bn
conv_layer.gamma.data.copy_(state[name_list[num]])
num = num + 1
conv_layer.beta.data.copy_(state[name_list[num]])
num = num + 1
conv_layer.running_mean.data.copy_(state[name_list[num]])
num = num + 1
conv_layer.running_var.data.copy_(state[name_list[num]])
num = num + 2 # 跳过num_batches_tracked
else:
# Load BN bias, weights, running mean and running variance
bn_layer = module[1]
bn_layer.weight.data.copy_(state[name_list[num]])
num = num + 1
bn_layer.bias.data.copy_(state[name_list[num]])
num = num + 1
bn_layer.running_mean.data.copy_(state[name_list[num]])
num = num + 1
bn_layer.running_var.data.copy_(state[name_list[num]])
num = num + 2 # 跳过num_batches_tracked
else:#加载在分类数据集(imagenet)上的权重,只加载reduce_fc的部分
name_list = list(state.keys())
num = 0
for i, (mdef, module) in enumerate(zip(model.module_defs, model.module_list)):
if mdef['type'] == 'convolutional' or mdef['type'] == 'depthwise':
conv_layer = module[0]
conv_layer.weight.data.copy_(state[name_list[num]])
num = num + 1
if conv_layer.bias is not None:
conv_layer.bias.data.copy_(state[name_list[num]])
num = num + 1
if mdef['batch_normalize'] == '1':
# Load BN bias, weights, running mean and running variance
bn_layer = module[1]
bn_layer.weight.data.copy_(state[name_list[num]])
num = num + 1
bn_layer.bias.data.copy_(state[name_list[num]])
num = num + 1
bn_layer.running_mean.data.copy_(state[name_list[num]])
num = num + 1
bn_layer.running_var.data.copy_(state[name_list[num]])
num = num + 2 # 跳过num_batches_tracked
if 'backbone' in mdef.keys():#加载在分类数据集(imagenet)上的权重,只加载reduce_fc的部分,之后不加载
break
return model
if __name__=='__main__':
from ssd.config import cfg
model = Backbone(cfg)
print(model)
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vlcp/service/connection/tcpserver.py | geek-plus/vlcp | 1 | 20546 | <filename>vlcp/service/connection/tcpserver.py
'''
Created on 2015/10/19
:author: hubo
'''
from vlcp.server.module import Module, api
from vlcp.event import TcpServer
from vlcp.event.runnable import RoutineContainer
from vlcp.event.connection import Client
class TcpServerBase(Module):
'''
Generic tcp server on specified URLs, vHosts are supported.
'''
_default_url = 'tcp:///'
_default_connmanage = False
_default_client = False
service = True
def _createprotocol(self, config):
return self._protocolclass()
def _createServers(self, config, vhostname, defaultconfig = {}, key = None, certificate = None, ca_certs = None, exists = {}, client = False):
urls = list(getattr(config, 'urls', []))
if hasattr(config, 'url') and config.url and config.url.strip():
urls.append(config.url.strip())
settings = dict(defaultconfig.items())
if hasattr(config, 'protocol'):
settings.update(config.protocol.items())
key = getattr(config, 'key', key)
certificate = getattr(config, 'certificate', certificate)
ca_certs = getattr(config, 'ca_certs', ca_certs)
client = getattr(config, 'client', client)
if urls:
defaultProtocol = self._createprotocol(config)
if self.connmanage:
# Patch init() and final()
def patch(prococol):
orig_init = prococol.init
def init(conn):
for m in orig_init(conn):
yield m
self.managed_connections.add(conn)
prococol.init = init
orig_final = prococol.final
def final(conn):
try:
self.managed_connections.remove(conn)
except Exception:
pass
for m in orig_final(conn):
yield m
prococol.final = final
patch(defaultProtocol)
defaultProtocol.vhost = vhostname
# Copy extra configurations to protocol
for k,v in settings:
setattr(defaultProtocol, k, v)
for url in urls:
if (vhostname, url) in exists:
exists.remove((vhostname, url))
else:
if client:
self.connections.append(self._client_class(config, defaultProtocol, vhostname)(url, defaultProtocol, self.scheduler,
key, certificate, ca_certs, getattr(config, 'bindaddress', None)))
else:
self.connections.append(self._server_class(config, defaultProtocol, vhostname)(url, defaultProtocol, self.scheduler,
key, certificate, ca_certs))
if hasattr(config, 'vhost'):
for k,v in config.vhost.items():
self._createServers(v, k, settings, key, certificate, ca_certs, exists, client)
def _client_class(self, config, protocol, vhost):
return Client
def _server_class(self, config, protocol, vhost):
return TcpServer
def __init__(self, server, protocolclass):
Module.__init__(self, server)
self._protocolclass = protocolclass
self.apiroutine = RoutineContainer(self.scheduler)
self.managed_connections = set()
self._createServers(self, '')
self.createAPI(api(self.getservers),
api(self.stoplisten, self.apiroutine),
api(self.startlisten, self.apiroutine),
api(self.updateconfig, self.apiroutine),
api(self.getconnections))
def unload(self, container, force=False):
if self.connmanage:
self.connections.extend(self.managed_connections)
self.managed_connections.clear()
for m in Module.unload(self, container, force=force):
yield m
def getservers(self, vhost = None):
'''
Return current servers
:param vhost: return only servers of vhost if specified. '' to return only default servers.
None for all servers.
'''
if vhost is not None:
return [s for s in self.connections if s.protocol.vhost == vhost]
else:
return list(self.connections)
def stoplisten(self, vhost = None):
'''
Stop listen on current servers
:param vhost: return only servers of vhost if specified. '' to return only default servers.
None for all servers.
'''
servers = self.getservers(vhost)
for s in servers:
for m in s.stoplisten():
yield m
self.apiroutine.retvalue = len(servers)
def startlisten(self, vhost = None):
'''
Start listen on current servers
:param vhost: return only servers of vhost if specified. '' to return only default servers.
None for all servers.
'''
servers = self.getservers(vhost)
for s in servers:
for m in s.startlisten():
yield m
self.apiroutine.retvalue = len(servers)
def updateconfig(self):
"Reload configurations, remove non-exist servers, add new servers, and leave others unchanged"
exists = {}
for s in self.connections:
exists[(s.protocol.vhost, s.rawurl)] = s
self._createServers(self, '', exists = exists)
for _,v in exists.items():
for m in v.shutdown():
yield m
self.connections.remove(v)
self.apiroutine.retvalue = None
def getconnections(self, vhost = None):
"Return accepted connections, optionally filtered by vhost"
if vhost is None:
return list(self.managed_connections)
else:
return [c for c in self.managed_connections if c.protocol.vhost == vhost]
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formapi/urls.py | reduxionist/django-formapi | 3 | 73787 | <filename>formapi/urls.py
# coding=utf-8
from . import views
from .api import API
from .compat import patterns, url
urlpatterns = patterns(
'',
url(r'discover/$', views.discover, name='api_discover'),
url(r'call/(?P<version>.+)/(?P<namespace>\w+)/(?P<call_name>\w+)/$',
views.call, name='api_call'),
url(r'(?P<version>.+)/(?P<namespace>\w+)/(?P<call>\w+)/', API.as_view(), name='api_view'),
)
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] |
hello/views.py | CupOfJoe-L/python-docs-hello-django | 0 | 45889 | <reponame>CupOfJoe-L/python-docs-hello-django
from django.http import HttpResponse
from django.shortcuts import render
def hello(request):
return HttpResponse("Hello, World! And everyone out there! This is the Django Version of the App I'm trying to Deploy.")
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util.py | majora2007/easy-java | 1 | 159680 | import re
from collections import Counter
from re import split
from os import chdir, environ
from os.path import join, dirname
import sys
def pyinstaller_get_full_path(filename):
""" If bundling files in onefile with pyinstaller, use thise to get the temp directory where file actually resides """
if hasattr(sys, '_MEIPASS'):
# PyInstaller >= 1.6
#chdir(sys._MEIPASS)
filename = join(sys._MEIPASS, filename)
elif '_MEIPASS2' in environ:
# PyInstaller < 1.6 (tested on 1.5 only)
#chdir(environ['_MEIPASS2'])
filename = join(environ['_MEIPASS2'], filename)
else:
#chdir(dirname(sys.argv[0]))
filename = join(dirname(sys.argv[0]), filename)
return filename
words_path = pyinstaller_get_full_path('words.txt')
def word_prob(word): return dictionary[word] / total
def words(text): return re.findall('[a-z]+', text.lower())
dictionary = Counter(words(open(words_path).read()))
max_word_length = max(map(len, dictionary))
total = float(sum(dictionary.values()))
print('Loading words.txt from {0}'.format(words_path))
print('Using word bank of: {0}'.format(total))
def viterbi_segment(text):
probs, lasts = [1.0], [0]
for i in range(1, len(text) + 1):
prob_k, k = max((probs[j] * word_prob(text[j:i]), j)
for j in range(max(0, i - max_word_length), i))
probs.append(prob_k)
lasts.append(k)
words = []
i = len(text)
while 0 < i:
words.append(text[lasts[i]:i])
i = lasts[i]
words.reverse()
return words, probs[-1]
def first_upper(s):
return s[0].upper() + s[1:]
def camel_case(s):
sentence = ' '.join(viterbi_segment(s.replace('_', '').lower())[0])
word = ''.join(a.capitalize() for a in split('([^a-zA-Z0-9])', sentence)
if a.isalnum())
return word[0].lower() + word[1:]
def first_chars(s):
""" Returns first characters combined of string. ApplicationGroup returns ag """
words = viterbi_segment(s.lower())[0]
end = (len(words) - 1) or 1
if len(words) is 1:
return ''.join(words[0:end])
else:
return ''.join([a[0] for a in words])
def spinal_case(s):
sentence = ' '.join(viterbi_segment(s.lower())[0])
word = '-'.join(a.capitalize() for a in split('([^a-zA-Z0-9])', sentence)
if a.isalnum())
return word
if __name__ == '__main__':
sentence = ' '.join(viterbi_segment('RCCBROLE'.lower())[0])
print('sentence: {0}'.format(sentence))
word = ''.join(a.capitalize() for a in split('([^a-zA-Z0-9])', sentence)
if a.isalnum())
print('word: {0}'.format(word[0].lower() + word[1:]))
#print('application: {0}'.format(first_chars('application')))
#print('applicationgroup: {0}'.format(first_chars('applicationgroup')))
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742,
10541,
29897,
13,
539,
565,
263,
29889,
275,
284,
1949,
3101,
13,
1678,
736,
1734,
13,
13,
13,
361,
4770,
978,
1649,
1275,
525,
1649,
3396,
1649,
2396,
13,
1678,
10541,
353,
525,
15300,
7122,
29898,
29894,
1524,
5365,
29918,
28192,
877,
29934,
4174,
29933,
1672,
1307,
4286,
13609,
3101,
29961,
29900,
2314,
13,
1678,
1596,
877,
18616,
663,
29901,
426,
29900,
29913,
4286,
4830,
29898,
18616,
663,
876,
13,
1678,
1734,
353,
525,
4286,
7122,
29898,
29874,
29889,
5030,
2410,
675,
580,
363,
263,
297,
6219,
877,
4197,
29985,
29874,
29899,
25265,
29899,
29999,
29900,
29899,
29929,
2314,
742,
10541,
29897,
13,
539,
565,
263,
29889,
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284,
1949,
3101,
13,
1678,
1596,
877,
1742,
29901,
426,
29900,
29913,
4286,
4830,
29898,
1742,
29961,
29900,
1822,
13609,
580,
718,
1734,
29961,
29896,
29901,
12622,
13,
13,
1678,
396,
2158,
877,
6214,
29901,
426,
29900,
29913,
4286,
4830,
29898,
4102,
29918,
305,
1503,
877,
6214,
29915,
4961,
13,
1678,
396,
2158,
877,
6214,
2972,
29901,
426,
29900,
29913,
4286,
4830,
29898,
4102,
29918,
305,
1503,
877,
6214,
2972,
29915,
4961,
13,
2
] |
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