README.md

metadata

license: mit
tags:
  - biology

[FFN paper], [data from the paper]

We downloaded and processed the data into formats that are easier to share.

• Ground truth

  • train: j0126-train-34vol.zip, 34 densely labeled subvolumes
  • validaiton: valid_12_skeletons.h5, manually traced skeletons for 12 neurons
  • test: test_50_skeletons.h5, manually traced skeletons for 50 neurons

• FFN result (due to the file size constraint, we split the zip into two files)

# first, merge the two parts together
zip -s 0 ffn_seg_part.zip --out ffn_seg.zip
rm ffn_seg_part*
# then, unzip the segmentation in tiles of the size 128x2048x2048 (saved in h5)
unzip ffn_seg.zip