sschet/scibert_scivocab_uncased-finetuned-ner
Token Classification
•
Updated
•
44
tokens
sequence | tags
sequence |
---|---|
[
"Naloxone",
"reverses",
"the",
"antihypertensive",
"effect",
"of",
"clonidine",
"."
] | [
1,
0,
0,
0,
0,
0,
1,
0
] |
[
"In",
"unanesthetized",
",",
"spontaneously",
"hypertensive",
"rats",
"the",
"decrease",
"in",
"blood",
"pressure",
"and",
"heart",
"rate",
"produced",
"by",
"intravenous",
"clonidine",
",",
"5",
"to",
"20",
"micrograms",
"/",
"kg",
",",
"was",
"inhibited",
"or",
"reversed",
"by",
"nalozone",
",",
"0",
"."
] | [
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0,
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] |
[
"2",
"to",
"2",
"mg",
"/",
"kg",
"."
] | [
0,
0,
0,
0,
0,
0,
0
] |
[
"The",
"hypotensive",
"effect",
"of",
"100",
"mg",
"/",
"kg",
"alpha-methyldopa",
"was",
"also",
"partially",
"reversed",
"by",
"naloxone",
"."
] | [
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0,
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0,
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[
"Naloxone",
"alone",
"did",
"not",
"affect",
"either",
"blood",
"pressure",
"or",
"heart",
"rate",
"."
] | [
1,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
[
"In",
"brain",
"membranes",
"from",
"spontaneously",
"hypertensive",
"rats",
"clonidine",
",",
"10",
"(-",
"8",
")",
"to",
"10",
"(-",
"5",
")",
"M",
",",
"did",
"not",
"influence",
"stereoselective",
"binding",
"of",
"[3H]-naloxone",
"(",
"8",
"nM",
"),",
"and",
"naloxone",
",",
"10",
"(-",
"8",
")",
"to",
"10",
"(-",
"4",
")",
"M",
",",
"did",
"not",
"influence",
"clonidine",
"-",
"suppressible",
"binding",
"of",
"[3H]-dihydroergocryptine",
"(",
"1",
"nM",
").",
"These",
"findings",
"indicate",
"that",
"in",
"spontaneously",
"hypertensive",
"rats",
"the",
"effects",
"of",
"central",
"alpha",
"-",
"adrenoceptor",
"stimulation",
"involve",
"activation",
"of",
"opiate",
"receptors",
"."
] | [
0,
0,
0,
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[
"As",
"naloxone",
"and",
"clonidine",
"do",
"not",
"appear",
"to",
"interact",
"with",
"the",
"same",
"receptor",
"site",
",",
"the",
"observed",
"functional",
"antagonism",
"suggests",
"the",
"release",
"of",
"an",
"endogenous",
"opiate",
"by",
"clonidine",
"or",
"alpha-methyldopa"
] | [
0,
1,
0,
1,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
1,
0,
1
] |
[
"Lidocaine",
"-",
"induced",
"cardiac",
"asystole",
"."
] | [
1,
0,
0,
2,
3,
0
] |
[
"Intravenous",
"administration",
"of",
"a",
"single",
"50",
"-",
"mg",
"bolus",
"of",
"lidocaine",
"in",
"a",
"67",
"-",
"year",
"-",
"old",
"man",
"resulted",
"in",
"profound",
"depression",
"of",
"the",
"activity",
"of",
"the",
"sinoatrial",
"and",
"atrioventricular",
"nodal",
"pacemakers",
"."
] | [
0,
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0,
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0,
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0,
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[
"The",
"patient",
"had",
"no",
"apparent",
"associated",
"conditions",
"which",
"might",
"have",
"predisposed",
"him",
"to",
"the",
"development",
"of",
"bradyarrhythmias",
";",
"and",
",",
"thus",
",",
"this",
"probably",
"represented",
"a",
"true",
"idiosyncrasy",
"to",
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2,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
1
] |
[
"Suxamethonium",
"infusion",
"rate",
"and",
"observed",
"fasciculations",
"."
] | [
1,
0,
0,
0,
0,
2,
0
] |
[
"A",
"dose",
"-",
"response",
"study",
"."
] | [
0,
0,
0,
0,
0,
0
] |
[
"Suxamethonium",
"chloride",
"(",
"Sch",
")",
"was",
"administered",
"i",
"."
] | [
1,
4,
0,
1,
0,
0,
0,
0,
0
] |
[
"v",
"."
] | [
0,
0
] |
[
"to",
"36",
"adult",
"males",
"at",
"six",
"rates",
":",
"0",
"."
] | [
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
[
"25",
"mg",
"s",
"-",
"1",
"to",
"20",
"mg",
"s",
"-",
"1",
"."
] | [
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
[
"The",
"infusion",
"was",
"discontinued",
"either",
"when",
"there",
"was",
"no",
"muscular",
"response",
"to",
"tetanic",
"stimulation",
"of",
"the",
"ulnar",
"nerve",
"or",
"when",
"Sch",
"120",
"mg",
"was",
"exceeded",
"."
] | [
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0,
0,
0,
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0,
2,
0,
0,
0,
0,
0,
0,
0,
1,
0,
0,
0,
0,
0
] |
[
"Six",
"additional",
"patients",
"received",
"a",
"30",
"-",
"mg",
"i",
"."
] | [
0,
0,
0,
0,
0,
0,
0,
0,
0,
0
] |
[
"v",
"."
] | [
0,
0
] |
[
"bolus",
"dose",
"."
] | [
0,
0,
0
] |
[
"Fasciculations",
"in",
"six",
"areas",
"of",
"the",
"body",
"were",
"scored",
"from",
"0",
"to",
"3",
"and",
"summated",
"as",
"a",
"total",
"fasciculation",
"score",
"."
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[
"The",
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"to",
"first",
"fasciculation",
",",
"twitch",
"suppression",
"and",
"tetanus",
"suppression",
"were",
"inversely",
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"to",
"the",
"infusion",
"rates",
"."
] | [
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0,
0,
2,
0,
0,
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0
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[
"Fasciculations",
"in",
"the",
"six",
"areas",
"and",
"the",
"total",
"fasciculation",
"score",
"were",
"related",
"directly",
"to",
"the",
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"of",
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"."
] | [
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0,
0,
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0,
0,
0,
0,
0,
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0,
0,
0
] |
[
"Total",
"fasciculation"
] | [
0,
2
] |
[
"Galanthamine",
"hydrobromide",
",",
"a",
"longer",
"acting",
"anticholinesterase",
"drug",
",",
"in",
"the",
"treatment",
"of",
"the",
"central",
"effects",
"of",
"scopolamine",
"(",
"Hyoscine",
").",
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"hydrobromide",
",",
"an",
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"drug",
"capable",
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"the",
"blood",
"-",
"brain",
"barrier",
",",
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"in",
"a",
"patient",
"demonstrating",
"central",
"effects",
"of",
"scopolamine",
"(",
"hyoscine",
")",
"overdosage",
"."
] | [
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0,
0,
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1,
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] |
[
"It",
"is",
"longer",
"acting",
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"physostigmine",
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"is",
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"in",
"anaesthesia",
"to",
"reverse",
"the",
"non",
"-",
"depolarizing",
"neuromuscular",
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"."
] | [
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0,
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0,
0,
0,
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0,
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0,
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0
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[
"However",
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"dose",
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"scopolamine"
] | [
0,
0,
0,
0,
0,
0,
0,
0,
0,
1
] |
[
"Effects",
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"high",
"protein",
"feeding",
"on",
"lithium",
"-",
"induced",
"chronic",
"renal",
"failure",
"in",
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"."
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1,
0,
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2,
3,
3,
0,
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[
"Rats",
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"-",
"induced",
"nephropathy",
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"to",
"high",
"protein",
"(",
"HP",
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"feeding",
",",
"uninephrectomy",
"(",
"NX",
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"or",
"a",
"combination",
"of",
"these",
",",
"in",
"an",
"attempt",
"to",
"induce",
"glomerular",
"hyperfiltration",
"and",
"further",
"progression",
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"."
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[
"Newborn",
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"a",
"lithium",
"-",
"containing",
"diet",
"(",
"50",
"mmol",
"/",
"kg",
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"for",
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"and",
"then",
"randomized",
"to",
"normal",
"diet",
",",
"HP",
"diet",
"(",
"40",
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"."
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] |
[
"19",
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"NX",
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"."
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0,
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0
] |
[
"Corresponding",
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"."
] | [
0,
0,
0,
1,
0,
0,
0,
0,
0
] |
[
"When",
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"all",
"lithium",
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"versus",
"non",
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"lithium",
"-",
"treated",
"groups",
",",
"lithium",
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"a",
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"filtration",
"rate",
"(",
"GFR",
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"without",
"significant",
"changes",
"in",
"effective",
"renal",
"plasma",
"flow",
"(",
"as",
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"by",
"a",
"marker",
"secreted",
"into",
"the",
"proximal",
"tubules",
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"or",
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"."
] | [
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0,
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] |
[
"Consequently",
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"a",
"fall",
"in",
"filtration",
"fraction",
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"an",
"increase",
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"Li",
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"."
] | [
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[
"Lithium",
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"proteinuria",
"and",
"systolic",
"hypertension",
"in",
"absence",
"of",
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"."
] | [
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[
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"rats",
"."
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[
"NX",
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",",
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",",
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"."
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[
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"."
] | [
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[
"The",
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"-",
"induced",
"nephropathy",
",",
"even",
"when",
"the",
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"is",
"only",
"modestly",
"reduced",
",",
"is",
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"with",
"proteinuria",
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"."
] | [
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0,
0,
0,
2,
0,
0,
0,
2,
0
] |
[
"In",
"this",
"model",
"of",
"chronic",
"renal",
"failure"
] | [
0,
0,
0,
0,
2,
3,
3
] |
[
"Treatment",
"of",
"Crohn's",
"disease",
"with",
"fusidic",
"acid",
":",
"an",
"antibiotic",
"with",
"immunosuppressive",
"properties",
"similar",
"to",
"cyclosporin",
"."
] | [
0,
0,
2,
3,
0,
1,
4,
0,
0,
0,
0,
0,
0,
0,
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] |
[
"Fusidic",
"acid",
"is",
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"with",
"T",
"-",
"cell",
"specific",
"immunosuppressive",
"effects",
"similar",
"to",
"those",
"of",
"cyclosporin",
"."
] | [
0,
0,
0,
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0,
0,
0,
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0,
0,
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0,
0,
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] |
[
"Because",
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"the",
"need",
"for",
"the",
"development",
"of",
"new",
"treatments",
"for",
"Crohn's",
"disease",
",",
"a",
"pilot",
"study",
"was",
"undertaken",
"to",
"estimate",
"the",
"pharmacodynamics",
"and",
"tolerability",
"of",
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"acid",
"treatment",
"in",
"chronic",
"active",
",",
"therapy",
"-",
"resistant",
"patients",
"."
] | [
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0,
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BioCreative V CDR NER dataset formatted in a part of TNER project. The original dataset consists of long documents which cannot be fed on LM because of the length, so we split them into sentences to reduce their size.
Chemical
, Disease
An example of train
looks as follows.
{
'tags': [2, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 0, 2, 0, 0],
'tokens': ['Fasciculations', 'in', 'six', 'areas', 'of', 'the', 'body', 'were', 'scored', 'from', '0', 'to', '3', 'and', 'summated', 'as', 'a', 'total', 'fasciculation', 'score', '.']
}
The label2id dictionary can be found at here.
{
"O": 0,
"B-Chemical": 1,
"B-Disease": 2,
"I-Disease": 3,
"I-Chemical": 4
}
name | train | validation | test |
---|---|---|---|
bc5cdr | 5228 | 5330 | 5865 |
@article{wei2016assessing,
title={Assessing the state of the art in biomedical relation extraction: overview of the BioCreative V chemical-disease relation (CDR) task},
author={Wei, Chih-Hsuan and Peng, Yifan and Leaman, Robert and Davis, Allan Peter and Mattingly, Carolyn J and Li, Jiao and Wiegers, Thomas C and Lu, Zhiyong},
journal={Database},
volume={2016},
year={2016},
publisher={Oxford Academic}
}