weights/README.md

Weights Directory

This folder contains the pre-trained weights for the BioM3 project models. The weights are stored as .bin files for different components of the BioM3 pipeline:

1. PenCL: Pre-trained weights for the PenCL model (Stage 1).
2. Facilitator: Pre-trained weights for the Facilitator model (Stage 2).
3. ProteoScribe: Pre-trained weights for the ProteoScribe model (Stage 3).

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Purpose

The weights provided here enable users to quickly load and run inference with the pre-trained models for text-protein sequence alignment, functional annotation, and other tasks.

Each subfolder includes:

• Instructions for downloading the desired .bin files.
• Information on integrating the weights into your workflows.

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Prerequisites

To download pre-trained weights, you must install gdown:

pip install gdown