| # Weights Directory | |
| This folder contains the pre-trained weights for the **BioM3** project models. The weights are stored as `.bin` files for different components of the BioM3 pipeline: | |
| 1. **PenCL**: Pre-trained weights for the PenCL model (Stage 1). | |
| 2. **Facilitator**: Pre-trained weights for the Facilitator model (Stage 2). | |
| 3. **ProteoScribe**: Pre-trained weights for the ProteoScribe model (Stage 3). | |
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| ## **Purpose** | |
| The weights provided here enable users to quickly load and run inference with the pre-trained models for text-protein sequence alignment, functional annotation, and other tasks. | |
| Each subfolder includes: | |
| - Instructions for downloading the desired `.bin` files. | |
| - Information on integrating the weights into your workflows. | |
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| ### **Prerequisites** | |
| To download pre-trained weights, you must install `gdown`: | |
| ```bash | |
| pip install gdown | |