metadata
dataset_info:
features:
- name: vh
dtype: string
- name: vl
dtype: string
- name: label
dtype:
class_label:
names:
'0': non-binder
'1': binder
splits:
- name: train
num_bytes: 4428189
num_examples: 18223
- name: eval
num_bytes: 553554
num_examples: 2278
- name: test
num_bytes: 553554
num_examples: 2278
download_size: 415916
dataset_size: 5535297
HER2 binding dataset
HER2 binding antibodies have been obtained from the Github repo for Mason et al. (2021).
Labels for antibody sequences were generated using scripts in the above Github repo. The number of negatives and positives were balanced through random undersampling using imbalanced-learn, and sequences were deduplicated.
The dataset has:
- 39108 antibodies in total
- 22779 antibodies after undersampling and deduplication
- 18223 in the training set, 2278 in the evaluation set, and 2278 in the test set.
Example
vh_full | vl_full | label |
---|---|---|
EVQ... | DIQ... | 1 |
EVQ... | DIQ... | 0 |
EVQ... | DIQ... | 0 |
EVQ... | DIQ... | 1 |
References