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CI-WATER/gsshapy
|
gsshapy/orm/rep.py
|
https://github.com/CI-WATER/gsshapy/blob/00fd4af0fd65f1614d75a52fe950a04fb0867f4c/gsshapy/orm/rep.py#L76-L87
|
def _write(self, session, openFile, replaceParamFile):
"""
Replace Param File Write to File Method
"""
# Retrieve TargetParameter objects
targets = self.targetParameters
# Write lines
openFile.write('%s\n' % self.numParameters)
for target in targets:
openFile.write('%s %s\n' % (target.targetVariable, target.varFormat))
|
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Replace Param File Write to File Method
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[
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] |
python
|
train
|
PGower/PyCanvas
|
pycanvas/apis/users.py
|
https://github.com/PGower/PyCanvas/blob/68520005382b440a1e462f9df369f54d364e21e8/pycanvas/apis/users.py#L876-L903
|
def merge_user_into_another_user_destination_user_id(self, id, destination_user_id):
"""
Merge user into another user.
Merge a user into another user.
To merge users, the caller must have permissions to manage both users. This
should be considered irreversible. This will delete the user and move all
the data into the destination user.
When finding users by SIS ids in different accounts the
destination_account_id is required.
The account can also be identified by passing the domain in destination_account_id.
"""
path = {}
data = {}
params = {}
# REQUIRED - PATH - id
"""ID"""
path["id"] = id
# REQUIRED - PATH - destination_user_id
"""ID"""
path["destination_user_id"] = destination_user_id
self.logger.debug("PUT /api/v1/users/{id}/merge_into/{destination_user_id} with query params: {params} and form data: {data}".format(params=params, data=data, **path))
return self.generic_request("PUT", "/api/v1/users/{id}/merge_into/{destination_user_id}".format(**path), data=data, params=params, single_item=True)
|
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When finding users by SIS ids in different accounts the
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|
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python
|
train
|
GeorgeArgyros/sfalearn
|
sfalearn/observationtableinit.py
|
https://github.com/GeorgeArgyros/sfalearn/blob/68a93f507e2fb7d89ca04bd8a8f0da2d6c680443/sfalearn/observationtableinit.py#L200-L287
|
def _init_using_k_equivalence(self, given_graph, sfa=False):
"""
Args:
given_graph (DFA): The DFA states
sfa (boolean): A boolean for chosing SFA
Return:
list, list, list: sm_vector, smi_vector, em_vector initialization vectors
"""
graph = DFA(self.alphabet)
graph.init_from_acceptor(given_graph)
graph.fixminimized(self.alphabet)
# Access Strings
self.access_strings_map = self._bfs_path_states(graph, sorted(
graph.states, key=attrgetter('initial'), reverse=True)[0])
# Find Q
set_q = set(self._object_set_to_state_list(graph.states))
# We will work with states addresses here instead of states stateid for
# more convenience
set_f = set(self._object_set_to_state_list(self._get_accepted(graph)))
# Perform P := {F, Q-F}
set_nf = set_q.copy() - set_f.copy()
self.groups = [set_f.copy(), set_nf.copy()]
self.bookeeping = [(set_f, set_nf, '')]
done = False
while not done:
done = True
new_groups = []
for selectgroup in self.groups:
# _check for each letter if it splits the current group
for character in self.alphabet:
# print 'Testing symbol: ', c
target = defaultdict(list)
target_states = defaultdict(int)
new_g = [set(selectgroup)]
for sid in selectgroup:
# _check if all transitions using c are going in a state
# in the same group. If they are going on a different
# group then split
deststate = self._delta(graph, graph[sid], character)
destgroup = self._get_group_from_state(
deststate.stateid)
target[destgroup].append(sid)
target_states[destgroup] = deststate.stateid
if len(target) > 1:
inv_target_states = {
v: k for k, v in target_states.iteritems()}
new_g = [set(selectedstate) for selectedstate in target.values()]
done = False
# Get all the partitions of destgroups
queue = [set([x for x in target_states.values()])]
while queue:
top = queue.pop(0)
(group1, group2, distinguish_string) = self._partition_group(top)
ng1 = self._reverse_to_source(
target, [inv_target_states[x] for x in group1])
ng2 = self._reverse_to_source(
target, [inv_target_states[x] for x in group2])
dist_string = character + distinguish_string
self.bookeeping.append((ng1, ng2, dist_string))
if len(group1) > 1:
queue.append(group1)
if len(group2) > 1:
queue.append(group2)
break
new_groups += new_g
# End of iteration for the k-equivalence
# Assign new groups and check if any change occured
self.groups = new_groups
sm_vector = [
i for (a, i) in sorted(
self.access_strings_map.items(),
key=lambda x: len(x[1]))]
if not sfa:
smi_vector = ['{}{}'.format(a, b)
for b in self.alphabet for a in sm_vector]
else:
smi_vector = self._init_smi(graph, self.access_strings_map)
em_vector = [distinguish_string for (_, _, distinguish_string) in self.bookeeping]
return sm_vector, smi_vector, em_vector
|
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python
|
train
|
aodag/WebDispatch
|
webdispatch/uritemplate.py
|
https://github.com/aodag/WebDispatch/blob/55f8658a2b4100498e098a80303a346c3940f1bc/webdispatch/uritemplate.py#L120-L134
|
def match(self, path_info: str) -> MatchResult:
""" parse path_info and detect urlvars of url pattern """
matched = self.regex.match(path_info)
if matched is None:
return None
matchlength = len(matched.group(0))
matchdict = matched.groupdict()
try:
matchdict = self.convert_values(matchdict)
except ValueError:
return None
return MatchResult(matchdict,
matchlength)
|
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parse path_info and detect urlvars of url pattern
|
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] |
python
|
train
|
winkidney/cmdtree
|
src/cmdtree/registry.py
|
https://github.com/winkidney/cmdtree/blob/8558be856f4c3044cf13d2d07a86b69877bb6491/src/cmdtree/registry.py#L19-L26
|
def tree(self):
"""
:rtype: cmdtree.tree.CmdTree
"""
from cmdtree.tree import CmdTree
if self._tree is None:
self._tree = CmdTree()
return self._tree
|
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"(",
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] |
:rtype: cmdtree.tree.CmdTree
|
[
":",
"rtype",
":",
"cmdtree",
".",
"tree",
".",
"CmdTree"
] |
python
|
train
|
Cognexa/cxflow
|
cxflow/hooks/save.py
|
https://github.com/Cognexa/cxflow/blob/dd609e6b0bd854424a8f86781dd77801a13038f9/cxflow/hooks/save.py#L175-L185
|
def after_epoch(self, epoch_data: EpochData, **_) -> None:
"""
Save the model if the new value of the monitored variable is better than the best value so far.
:param epoch_data: epoch data to be processed
"""
new_value = self._get_value(epoch_data)
if self._is_value_better(new_value):
self._best_value = new_value
SaveEvery.save_model(model=self._model, name_suffix=self._OUTPUT_NAME, on_failure=self._on_save_failure)
|
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Save the model if the new value of the monitored variable is better than the best value so far.
:param epoch_data: epoch data to be processed
|
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] |
python
|
train
|
apple/turicreate
|
src/unity/python/turicreate/toolkits/classifier/svm_classifier.py
|
https://github.com/apple/turicreate/blob/74514c3f99e25b46f22c6e02977fe3da69221c2e/src/unity/python/turicreate/toolkits/classifier/svm_classifier.py#L27-L226
|
def create(dataset, target, features=None,
penalty=1.0, solver='auto',
feature_rescaling=True,
convergence_threshold = _DEFAULT_SOLVER_OPTIONS['convergence_threshold'],
lbfgs_memory_level = _DEFAULT_SOLVER_OPTIONS['lbfgs_memory_level'],
max_iterations = _DEFAULT_SOLVER_OPTIONS['max_iterations'],
class_weights = None,
validation_set = 'auto',
verbose=True):
"""
Create a :class:`~turicreate.svm_classifier.SVMClassifier` to predict the class of a binary
target variable based on a model of which side of a hyperplane the example
falls on. In addition to standard numeric and categorical types, features
can also be extracted automatically from list- or dictionary-type SFrame
columns.
This loss function for the SVM model is the sum of an L1 mis-classification
loss (multiplied by the 'penalty' term) and a l2-norm on the weight vectors.
Parameters
----------
dataset : SFrame
Dataset for training the model.
target : string
Name of the column containing the target variable. The values in this
column must be of string or integer type. String target variables are
automatically mapped to integers in alphabetical order of the variable
values. For example, a target variable with 'cat' and 'dog' as possible
values is mapped to 0 and 1 respectively with 0 being the base class
and 1 being the reference class.
features : list[string], optional
Names of the columns containing features. 'None' (the default) indicates
that all columns except the target variable should be used as features.
The features are columns in the input SFrame that can be of the
following types:
- *Numeric*: values of numeric type integer or float.
- *Categorical*: values of type string.
- *Array*: list of numeric (integer or float) values. Each list element
is treated as a separate feature in the model.
- *Dictionary*: key-value pairs with numeric (integer or float) values
Each key of a dictionary is treated as a separate feature and the
value in the dictionary corresponds to the value of the feature.
Dictionaries are ideal for representing sparse data.
Columns of type *list* are not supported. Convert them to array in
case all entries in the list are of numeric types and separate them
out into different columns if they are of mixed type.
penalty : float, optional
Penalty term on the mis-classification loss of the model. The larger
this weight, the more the model coefficients shrink toward 0. The
larger the penalty, the lower is the emphasis placed on misclassified
examples, and the classifier would spend more time maximizing the
margin for correctly classified examples. The default value is 1.0;
this parameter must be set to a value of at least 1e-10.
solver : string, optional
Name of the solver to be used to solve the problem. See the
references for more detail on each solver. Available solvers are:
- *auto (default)*: automatically chooses the best solver (from the ones
listed below) for the data and model parameters.
- *lbfgs*: lLimited memory BFGS (``lbfgs``) is a robust solver for wide
datasets(i.e datasets with many coefficients).
The solvers are all automatically tuned and the default options should
function well. See the solver options guide for setting additional
parameters for each of the solvers.
feature_rescaling : bool, default = true
Feature rescaling is an important pre-processing step that ensures
that all features are on the same scale. An l2-norm rescaling is
performed to make sure that all features are of the same norm. Categorical
features are also rescaled by rescaling the dummy variables that
are used to represent them. The coefficients are returned in original
scale of the problem.
convergence_threshold :
Convergence is tested using variation in the training objective. The
variation in the training objective is calculated using the difference
between the objective values between two steps. Consider reducing this
below the default value (0.01) for a more accurately trained model.
Beware of overfitting (i.e a model that works well only on the training
data) if this parameter is set to a very low value.
max_iterations : int, optional
The maximum number of allowed passes through the data. More passes over
the data can result in a more accurately trained model. Consider
increasing this (the default value is 10) if the training accuracy is
low and the *Grad-Norm* in the display is large.
lbfgs_memory_level : int, optional
The L-BFGS algorithm keeps track of gradient information from the
previous ``lbfgs_memory_level`` iterations. The storage requirement for
each of these gradients is the ``num_coefficients`` in the problem.
Increasing the ``lbfgs_memory_level`` can help improve the quality of
the model trained. Setting this to more than ``max_iterations`` has the
same effect as setting it to ``max_iterations``.
class_weights : {dict, `auto`}, optional
Weights the examples in the training data according to the given class
weights. If set to `None`, all classes are supposed to have weight one. The
`auto` mode set the class weight to be inversely proportional to number of
examples in the training data with the given class.
validation_set : SFrame, optional
A dataset for monitoring the model's generalization performance.
For each row of the progress table, the chosen metrics are computed
for both the provided training dataset and the validation_set. The
format of this SFrame must be the same as the training set.
By default this argument is set to 'auto' and a validation set is
automatically sampled and used for progress printing. If
validation_set is set to None, then no additional metrics
are computed. The default value is 'auto'.
verbose : bool, optional
If True, print progress updates.
Returns
-------
out : SVMClassifier
A trained model of type
:class:`~turicreate.svm_classifier.SVMClassifier`.
See Also
--------
SVMClassifier
Notes
-----
- Categorical variables are encoded by creating dummy variables. For
a variable with :math:`K` categories, the encoding creates :math:`K-1`
dummy variables, while the first category encountered in the data is used
as the baseline.
- For prediction and evaluation of SVM models with sparse dictionary
inputs, new keys/columns that were not seen during training are silently
ignored.
- The penalty parameter is analogous to the 'C' term in the C-SVM. See the
reference on training SVMs for more details.
- Any 'None' values in the data will result in an error being thrown.
- A constant term of '1' is automatically added for the model intercept to
model the bias term.
- Note that the hinge loss is approximated by the scaled logistic loss
function. (See user guide for details)
References
----------
- `Wikipedia - Support Vector Machines
<http://en.wikipedia.org/wiki/svm>`_
- Zhang et al. - Modified Logistic Regression: An Approximation to
SVM and its Applications in Large-Scale Text Categorization (ICML 2003)
Examples
--------
Given an :class:`~turicreate.SFrame` ``sf``, a list of feature columns
[``feature_1`` ... ``feature_K``], and a target column ``target`` with 0 and
1 values, create a
:class:`~turicreate.svm.SVMClassifier` as follows:
>>> data = turicreate.SFrame('https://static.turi.com/datasets/regression/houses.csv')
>>> data['is_expensive'] = data['price'] > 30000
>>> model = turicreate.svm_classifier.create(data, 'is_expensive')
"""
# Regression model names.
model_name = "classifier_svm"
solver = solver.lower()
model = _sl.create(dataset, target, model_name, features=features,
validation_set = validation_set, verbose = verbose,
penalty = penalty,
feature_rescaling = feature_rescaling,
convergence_threshold = convergence_threshold,
lbfgs_memory_level = lbfgs_memory_level,
max_iterations = max_iterations,
class_weights = class_weights)
return SVMClassifier(model.__proxy__)
|
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Create a :class:`~turicreate.svm_classifier.SVMClassifier` to predict the class of a binary
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can also be extracted automatically from list- or dictionary-type SFrame
columns.
This loss function for the SVM model is the sum of an L1 mis-classification
loss (multiplied by the 'penalty' term) and a l2-norm on the weight vectors.
Parameters
----------
dataset : SFrame
Dataset for training the model.
target : string
Name of the column containing the target variable. The values in this
column must be of string or integer type. String target variables are
automatically mapped to integers in alphabetical order of the variable
values. For example, a target variable with 'cat' and 'dog' as possible
values is mapped to 0 and 1 respectively with 0 being the base class
and 1 being the reference class.
features : list[string], optional
Names of the columns containing features. 'None' (the default) indicates
that all columns except the target variable should be used as features.
The features are columns in the input SFrame that can be of the
following types:
- *Numeric*: values of numeric type integer or float.
- *Categorical*: values of type string.
- *Array*: list of numeric (integer or float) values. Each list element
is treated as a separate feature in the model.
- *Dictionary*: key-value pairs with numeric (integer or float) values
Each key of a dictionary is treated as a separate feature and the
value in the dictionary corresponds to the value of the feature.
Dictionaries are ideal for representing sparse data.
Columns of type *list* are not supported. Convert them to array in
case all entries in the list are of numeric types and separate them
out into different columns if they are of mixed type.
penalty : float, optional
Penalty term on the mis-classification loss of the model. The larger
this weight, the more the model coefficients shrink toward 0. The
larger the penalty, the lower is the emphasis placed on misclassified
examples, and the classifier would spend more time maximizing the
margin for correctly classified examples. The default value is 1.0;
this parameter must be set to a value of at least 1e-10.
solver : string, optional
Name of the solver to be used to solve the problem. See the
references for more detail on each solver. Available solvers are:
- *auto (default)*: automatically chooses the best solver (from the ones
listed below) for the data and model parameters.
- *lbfgs*: lLimited memory BFGS (``lbfgs``) is a robust solver for wide
datasets(i.e datasets with many coefficients).
The solvers are all automatically tuned and the default options should
function well. See the solver options guide for setting additional
parameters for each of the solvers.
feature_rescaling : bool, default = true
Feature rescaling is an important pre-processing step that ensures
that all features are on the same scale. An l2-norm rescaling is
performed to make sure that all features are of the same norm. Categorical
features are also rescaled by rescaling the dummy variables that
are used to represent them. The coefficients are returned in original
scale of the problem.
convergence_threshold :
Convergence is tested using variation in the training objective. The
variation in the training objective is calculated using the difference
between the objective values between two steps. Consider reducing this
below the default value (0.01) for a more accurately trained model.
Beware of overfitting (i.e a model that works well only on the training
data) if this parameter is set to a very low value.
max_iterations : int, optional
The maximum number of allowed passes through the data. More passes over
the data can result in a more accurately trained model. Consider
increasing this (the default value is 10) if the training accuracy is
low and the *Grad-Norm* in the display is large.
lbfgs_memory_level : int, optional
The L-BFGS algorithm keeps track of gradient information from the
previous ``lbfgs_memory_level`` iterations. The storage requirement for
each of these gradients is the ``num_coefficients`` in the problem.
Increasing the ``lbfgs_memory_level`` can help improve the quality of
the model trained. Setting this to more than ``max_iterations`` has the
same effect as setting it to ``max_iterations``.
class_weights : {dict, `auto`}, optional
Weights the examples in the training data according to the given class
weights. If set to `None`, all classes are supposed to have weight one. The
`auto` mode set the class weight to be inversely proportional to number of
examples in the training data with the given class.
validation_set : SFrame, optional
A dataset for monitoring the model's generalization performance.
For each row of the progress table, the chosen metrics are computed
for both the provided training dataset and the validation_set. The
format of this SFrame must be the same as the training set.
By default this argument is set to 'auto' and a validation set is
automatically sampled and used for progress printing. If
validation_set is set to None, then no additional metrics
are computed. The default value is 'auto'.
verbose : bool, optional
If True, print progress updates.
Returns
-------
out : SVMClassifier
A trained model of type
:class:`~turicreate.svm_classifier.SVMClassifier`.
See Also
--------
SVMClassifier
Notes
-----
- Categorical variables are encoded by creating dummy variables. For
a variable with :math:`K` categories, the encoding creates :math:`K-1`
dummy variables, while the first category encountered in the data is used
as the baseline.
- For prediction and evaluation of SVM models with sparse dictionary
inputs, new keys/columns that were not seen during training are silently
ignored.
- The penalty parameter is analogous to the 'C' term in the C-SVM. See the
reference on training SVMs for more details.
- Any 'None' values in the data will result in an error being thrown.
- A constant term of '1' is automatically added for the model intercept to
model the bias term.
- Note that the hinge loss is approximated by the scaled logistic loss
function. (See user guide for details)
References
----------
- `Wikipedia - Support Vector Machines
<http://en.wikipedia.org/wiki/svm>`_
- Zhang et al. - Modified Logistic Regression: An Approximation to
SVM and its Applications in Large-Scale Text Categorization (ICML 2003)
Examples
--------
Given an :class:`~turicreate.SFrame` ``sf``, a list of feature columns
[``feature_1`` ... ``feature_K``], and a target column ``target`` with 0 and
1 values, create a
:class:`~turicreate.svm.SVMClassifier` as follows:
>>> data = turicreate.SFrame('https://static.turi.com/datasets/regression/houses.csv')
>>> data['is_expensive'] = data['price'] > 30000
>>> model = turicreate.svm_classifier.create(data, 'is_expensive')
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python
|
train
|
KelSolaar/Umbra
|
umbra/components/factory/components_manager_ui/components_manager_ui.py
|
https://github.com/KelSolaar/Umbra/blob/66f45f08d9d723787f1191989f8b0dda84b412ce/umbra/components/factory/components_manager_ui/components_manager_ui.py#L822-L858
|
def activate_components_ui(self):
"""
Activates user selected Components.
:return: Method success.
:rtype: bool
:note: May require user interaction.
"""
selected_components = self.get_selected_components()
self.__engine.start_processing("Activating Components ...", len(selected_components))
activation_failed_components = []
for component in selected_components:
if not component.interface.activated:
success = self.activate_component(component.name) or False
if not success:
activation_failed_components.append(component)
else:
self.__engine.notifications_manager.warnify("{0} | '{1}' Component is already activated!".format(
self.__class__.__name__, component.name))
self.__engine.step_processing()
self.__engine.stop_processing()
self.__store_deactivated_components()
if not activation_failed_components:
return True
else:
raise manager.exceptions.ComponentActivationError(
"{0} | Exception(s) raised while activating '{1}' Component(s)!".format(self.__class__.__name__,
", ".join((
activation_failed_component.name
for activation_failed_component
in
activation_failed_components))))
|
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[
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python
|
train
|
python-diamond/Diamond
|
src/collectors/icinga_stats/icinga_stats.py
|
https://github.com/python-diamond/Diamond/blob/0f3eb04327d6d3ed5e53a9967d6c9d2c09714a47/src/collectors/icinga_stats/icinga_stats.py#L208-L234
|
def _get_active_stats(self, app_stats):
"""
Process:
* active_scheduled_host_check_stats
* active_scheduled_service_check_stats
* active_ondemand_host_check_stats
* active_ondemand_service_check_stats
"""
stats = {}
app_keys = [
"active_scheduled_host_check_stats",
"active_scheduled_service_check_stats",
"active_ondemand_host_check_stats",
"active_ondemand_service_check_stats",
]
for app_key in app_keys:
if app_key not in app_stats.keys():
continue
splitted = app_key.split("_")
metric = "%ss.%s_%s" % (splitted[2], splitted[0], splitted[1])
(x01, x05, x15) = self._convert_tripplet(app_stats[app_key])
stats["%s.01" % (metric)] = x01
stats["%s.05" % (metric)] = x05
stats["%s.15" % (metric)] = x15
return stats
|
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[
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python
|
train
|
Yelp/threat_intel
|
threat_intel/util/http.py
|
https://github.com/Yelp/threat_intel/blob/60eef841d7cca115ec7857aeb9c553b72b694851/threat_intel/util/http.py#L220-L237
|
def multi_post(self, urls, query_params=None, data=None, to_json=True, send_as_file=False):
"""Issue multiple POST requests.
Args:
urls - A string URL or list of string URLs
query_params - None, a dict, or a list of dicts representing the query params
data - None, a dict or string, or a list of dicts and strings representing the data body.
to_json - A boolean, should the responses be returned as JSON blobs
send_as_file - A boolean, should the data be sent as a file.
Returns:
a list of dicts if to_json is set of requests.response otherwise.
Raises:
InvalidRequestError - Can not decide how many requests to issue.
"""
return self._multi_request(
MultiRequest._VERB_POST, urls, query_params,
data, to_json=to_json, send_as_file=send_as_file,
)
|
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Issue multiple POST requests.
Args:
urls - A string URL or list of string URLs
query_params - None, a dict, or a list of dicts representing the query params
data - None, a dict or string, or a list of dicts and strings representing the data body.
to_json - A boolean, should the responses be returned as JSON blobs
send_as_file - A boolean, should the data be sent as a file.
Returns:
a list of dicts if to_json is set of requests.response otherwise.
Raises:
InvalidRequestError - Can not decide how many requests to issue.
|
[
"Issue",
"multiple",
"POST",
"requests",
"."
] |
python
|
train
|
sdispater/orator
|
orator/orm/relations/belongs_to_many.py
|
https://github.com/sdispater/orator/blob/bd90bf198ee897751848f9a92e49d18e60a74136/orator/orm/relations/belongs_to_many.py#L693-L703
|
def _get_attach_id(self, key, value, attributes):
"""
Get the attach record ID and extra attributes.
"""
if isinstance(value, dict):
key = list(value.keys())[0]
attributes.update(value[key])
return [key, attributes]
return value, attributes
|
[
"def",
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Get the attach record ID and extra attributes.
|
[
"Get",
"the",
"attach",
"record",
"ID",
"and",
"extra",
"attributes",
"."
] |
python
|
train
|
inveniosoftware/invenio-access
|
invenio_access/cli.py
|
https://github.com/inveniosoftware/invenio-access/blob/3b033a4bdc110eb2f7e9f08f0744a780884bfc80/invenio_access/cli.py#L108-L114
|
def allow_user(user):
"""Allow a user identified by an email address."""
def processor(action, argument):
db.session.add(
ActionUsers.allow(action, argument=argument, user_id=user.id)
)
return processor
|
[
"def",
"allow_user",
"(",
"user",
")",
":",
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"processor",
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",",
"argument",
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"argument",
",",
"user_id",
"=",
"user",
".",
"id",
")",
")",
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] |
Allow a user identified by an email address.
|
[
"Allow",
"a",
"user",
"identified",
"by",
"an",
"email",
"address",
"."
] |
python
|
train
|
Azure/azure-sdk-for-python
|
azure-servicebus/azure/servicebus/control_client/_serialization.py
|
https://github.com/Azure/azure-sdk-for-python/blob/d7306fde32f60a293a7567678692bdad31e4b667/azure-servicebus/azure/servicebus/control_client/_serialization.py#L306-L346
|
def _convert_etree_element_to_subscription(entry_element):
'''Converts entry element to subscription
The xml format for subscription:
<entry xmlns='http://www.w3.org/2005/Atom'>
<content type='application/xml'>
<SubscriptionDescription
xmlns:i="http://www.w3.org/2001/XMLSchema-instance"
xmlns="http://schemas.microsoft.com/netservices/2010/10/servicebus/connect">
<LockDuration>PT5M</LockDuration>
<RequiresSession>false</RequiresSession>
<DefaultMessageTimeToLive>P10675199DT2H48M5.4775807S</DefaultMessageTimeToLive>
<DeadLetteringOnMessageExpiration>false</DeadLetteringOnMessageExpiration>
<DeadLetteringOnFilterEvaluationExceptions>true</DeadLetteringOnFilterEvaluationExceptions>
</SubscriptionDescription>
</content>
</entry>
'''
subscription = Subscription()
subscription_element = entry_element.find('./atom:content/sb:SubscriptionDescription', _etree_sb_feed_namespaces)
if subscription_element is not None:
mappings = [
('LockDuration', 'lock_duration', None),
('RequiresSession', 'requires_session', _parse_bool),
('DefaultMessageTimeToLive', 'default_message_time_to_live', None),
('DeadLetteringOnFilterEvaluationExceptions', 'dead_lettering_on_filter_evaluation_exceptions', _parse_bool), # pylint: disable=line-too-long
('DeadLetteringOnMessageExpiration', 'dead_lettering_on_message_expiration', _parse_bool),
('EnableBatchedOperations', 'enable_batched_operations', _parse_bool),
('MaxDeliveryCount', 'max_delivery_count', int),
('MessageCount', 'message_count', int),
]
for mapping in mappings:
_read_etree_element(subscription_element, mapping[0], subscription, mapping[1], mapping[2])
for name, value in _ETreeXmlToObject.get_entry_properties_from_element(
entry_element, True, '/subscriptions').items():
setattr(subscription, name, value)
return subscription
|
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"(",
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":",
"setattr",
"(",
"subscription",
",",
"name",
",",
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")",
"return",
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Converts entry element to subscription
The xml format for subscription:
<entry xmlns='http://www.w3.org/2005/Atom'>
<content type='application/xml'>
<SubscriptionDescription
xmlns:i="http://www.w3.org/2001/XMLSchema-instance"
xmlns="http://schemas.microsoft.com/netservices/2010/10/servicebus/connect">
<LockDuration>PT5M</LockDuration>
<RequiresSession>false</RequiresSession>
<DefaultMessageTimeToLive>P10675199DT2H48M5.4775807S</DefaultMessageTimeToLive>
<DeadLetteringOnMessageExpiration>false</DeadLetteringOnMessageExpiration>
<DeadLetteringOnFilterEvaluationExceptions>true</DeadLetteringOnFilterEvaluationExceptions>
</SubscriptionDescription>
</content>
</entry>
|
[
"Converts",
"entry",
"element",
"to",
"subscription"
] |
python
|
test
|
mikedh/trimesh
|
trimesh/integrate.py
|
https://github.com/mikedh/trimesh/blob/25e059bf6d4caa74f62ffd58ce4f61a90ee4e518/trimesh/integrate.py#L15-L90
|
def symbolic_barycentric(function):
"""
Symbolically integrate a function(x,y,z) across a triangle or mesh.
Parameters
----------
function: string or sympy expression
x, y, z will be replaced with a barycentric representation
and the the function is integrated across the triangle.
Returns
----------
evaluator: numpy lambda function of result which takes a mesh
expr: sympy expression of result
Examples
-----------
In [1]: function = '1'
In [2]: integrator, expr = integrate_barycentric(function)
In [3]: integrator
Out[3]: <__main__.evaluator instance at 0x7f66cd2a6200>
In [4]: expr
Out[4]: 1/2
In [5]: result = integrator(mesh)
In [6]: mesh.area
Out[6]: 34.641016151377542
In [7]: result.sum()
Out[7]: 34.641016151377542
"""
class evaluator:
def __init__(self, expr, expr_args):
self.lambdified = sp.lambdify(args=expr_args,
expr=expr,
modules=['numpy', 'sympy'])
def __call__(self, mesh, *args):
"""
Quickly evaluate the surface integral across a mesh
Parameters
----------
mesh: Trimesh object
Returns
----------
integrated: (len(faces),) float, integral evaluated for each face
"""
integrated = self.lambdified(*mesh.triangles.reshape((-1, 9)).T)
integrated *= 2 * mesh.area_faces
return integrated
function, symbols = substitute_barycentric(function)
b1, b2, x1, x2, x3, y1, y2, y3, z1, z2, z3 = symbols
# do the first integral for b1
integrated_1 = sp.integrate(function, b1)
integrated_1 = (integrated_1.subs({b1: 1 - b2}) -
integrated_1.subs({b1: 0}))
integrated_2 = sp.integrate(integrated_1, b2)
integrated_2 = (integrated_2.subs({b2: 1}) -
integrated_2.subs({b2: 0}))
lambdified = evaluator(expr=integrated_2,
expr_args=[x1, y1, z1, x2, y2, z2, x3, y3, z3])
return lambdified, integrated_2
|
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"]",
")",
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Symbolically integrate a function(x,y,z) across a triangle or mesh.
Parameters
----------
function: string or sympy expression
x, y, z will be replaced with a barycentric representation
and the the function is integrated across the triangle.
Returns
----------
evaluator: numpy lambda function of result which takes a mesh
expr: sympy expression of result
Examples
-----------
In [1]: function = '1'
In [2]: integrator, expr = integrate_barycentric(function)
In [3]: integrator
Out[3]: <__main__.evaluator instance at 0x7f66cd2a6200>
In [4]: expr
Out[4]: 1/2
In [5]: result = integrator(mesh)
In [6]: mesh.area
Out[6]: 34.641016151377542
In [7]: result.sum()
Out[7]: 34.641016151377542
|
[
"Symbolically",
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"a",
"function",
"(",
"x",
"y",
"z",
")",
"across",
"a",
"triangle",
"or",
"mesh",
"."
] |
python
|
train
|
saltstack/salt
|
salt/modules/napalm_mod.py
|
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/modules/napalm_mod.py#L253-L281
|
def call(method, *args, **kwargs):
'''
Execute arbitrary methods from the NAPALM library.
To see the expected output, please consult the NAPALM documentation.
.. note::
This feature is not recommended to be used in production.
It should be used for testing only!
CLI Example:
.. code-block:: bash
salt '*' napalm.call get_lldp_neighbors
salt '*' napalm.call get_firewall_policies
salt '*' napalm.call get_bgp_config group='my-group'
'''
clean_kwargs = {}
for karg, warg in six.iteritems(kwargs):
# remove the __pub args
if not karg.startswith('__pub_'):
clean_kwargs[karg] = warg
return salt.utils.napalm.call(
napalm_device, # pylint: disable=undefined-variable
method,
*args,
**clean_kwargs
)
|
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"def",
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",",
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"*",
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")"
] |
Execute arbitrary methods from the NAPALM library.
To see the expected output, please consult the NAPALM documentation.
.. note::
This feature is not recommended to be used in production.
It should be used for testing only!
CLI Example:
.. code-block:: bash
salt '*' napalm.call get_lldp_neighbors
salt '*' napalm.call get_firewall_policies
salt '*' napalm.call get_bgp_config group='my-group'
|
[
"Execute",
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"consult",
"the",
"NAPALM",
"documentation",
"."
] |
python
|
train
|
alefnula/tea
|
tea/utils/compress.py
|
https://github.com/alefnula/tea/blob/f5a0a724a425ec4f9dd2c7fe966ef06faf3a15a3/tea/utils/compress.py#L158-L165
|
def seven_zip(archive, items, self_extracting=False):
"""Create a 7z archive."""
if not isinstance(items, (list, tuple)):
items = [items]
if self_extracting:
return er(_get_sz(), "a", "-ssw", "-sfx", archive, *items)
else:
return er(_get_sz(), "a", "-ssw", archive, *items)
|
[
"def",
"seven_zip",
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",",
"\"a\"",
",",
"\"-ssw\"",
",",
"archive",
",",
"*",
"items",
")"
] |
Create a 7z archive.
|
[
"Create",
"a",
"7z",
"archive",
"."
] |
python
|
train
|
elastic/elasticsearch-dsl-py
|
elasticsearch_dsl/search.py
|
https://github.com/elastic/elasticsearch-dsl-py/blob/874b52472fc47b601de0e5fa0e4300e21aff0085/elasticsearch_dsl/search.py#L703-L721
|
def scan(self):
"""
Turn the search into a scan search and return a generator that will
iterate over all the documents matching the query.
Use ``params`` method to specify any additional arguments you with to
pass to the underlying ``scan`` helper from ``elasticsearch-py`` -
https://elasticsearch-py.readthedocs.io/en/master/helpers.html#elasticsearch.helpers.scan
"""
es = connections.get_connection(self._using)
for hit in scan(
es,
query=self.to_dict(),
index=self._index,
**self._params
):
yield self._get_result(hit)
|
[
"def",
"scan",
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")",
":",
"es",
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"get_connection",
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"_params",
")",
":",
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"(",
"hit",
")"
] |
Turn the search into a scan search and return a generator that will
iterate over all the documents matching the query.
Use ``params`` method to specify any additional arguments you with to
pass to the underlying ``scan`` helper from ``elasticsearch-py`` -
https://elasticsearch-py.readthedocs.io/en/master/helpers.html#elasticsearch.helpers.scan
|
[
"Turn",
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"search",
"into",
"a",
"scan",
"search",
"and",
"return",
"a",
"generator",
"that",
"will",
"iterate",
"over",
"all",
"the",
"documents",
"matching",
"the",
"query",
"."
] |
python
|
train
|
mishbahr/django-connected
|
connected_accounts/views.py
|
https://github.com/mishbahr/django-connected/blob/7ec1f042786fef2eb6c00b1479ce47c90341ba81/connected_accounts/views.py#L136-L140
|
def handle_login_failure(self, provider, reason):
"""Message user and redirect on error."""
logger.error('Authenication Failure: {0}'.format(reason))
messages.error(self.request, 'Authenication Failed. Please try again')
return redirect(self.get_error_redirect(provider, reason))
|
[
"def",
"handle_login_failure",
"(",
"self",
",",
"provider",
",",
"reason",
")",
":",
"logger",
".",
"error",
"(",
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".",
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"(",
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")",
")",
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"(",
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"request",
",",
"'Authenication Failed. Please try again'",
")",
"return",
"redirect",
"(",
"self",
".",
"get_error_redirect",
"(",
"provider",
",",
"reason",
")",
")"
] |
Message user and redirect on error.
|
[
"Message",
"user",
"and",
"redirect",
"on",
"error",
"."
] |
python
|
train
|
mikusjelly/apkutils
|
apkutils/apkfile.py
|
https://github.com/mikusjelly/apkutils/blob/2db1ed0cdb610dfc55bfd77266e9a91e4764bba4/apkutils/apkfile.py#L182-L196
|
def is_zipfile(filename):
"""Quickly see if a file is a ZIP file by checking the magic number.
The filename argument may be a file or file-like object too.
"""
result = False
try:
if hasattr(filename, "read"):
result = _check_zipfile(fp=filename)
else:
with open(filename, "rb") as fp:
result = _check_zipfile(fp)
except OSError:
pass
return result
|
[
"def",
"is_zipfile",
"(",
"filename",
")",
":",
"result",
"=",
"False",
"try",
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"if",
"hasattr",
"(",
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",",
"\"read\"",
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"as",
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"result",
"=",
"_check_zipfile",
"(",
"fp",
")",
"except",
"OSError",
":",
"pass",
"return",
"result"
] |
Quickly see if a file is a ZIP file by checking the magic number.
The filename argument may be a file or file-like object too.
|
[
"Quickly",
"see",
"if",
"a",
"file",
"is",
"a",
"ZIP",
"file",
"by",
"checking",
"the",
"magic",
"number",
"."
] |
python
|
train
|
pypa/pipenv
|
pipenv/vendor/distlib/_backport/tarfile.py
|
https://github.com/pypa/pipenv/blob/cae8d76c210b9777e90aab76e9c4b0e53bb19cde/pipenv/vendor/distlib/_backport/tarfile.py#L810-L832
|
def read(self, size=None):
"""Read at most size bytes from the file. If size is not
present or None, read all data until EOF is reached.
"""
if self.closed:
raise ValueError("I/O operation on closed file")
buf = b""
if self.buffer:
if size is None:
buf = self.buffer
self.buffer = b""
else:
buf = self.buffer[:size]
self.buffer = self.buffer[size:]
if size is None:
buf += self.fileobj.read()
else:
buf += self.fileobj.read(size - len(buf))
self.position += len(buf)
return buf
|
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"+=",
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"(",
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")",
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Read at most size bytes from the file. If size is not
present or None, read all data until EOF is reached.
|
[
"Read",
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"not",
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"None",
"read",
"all",
"data",
"until",
"EOF",
"is",
"reached",
"."
] |
python
|
train
|
PythonSanSebastian/docstamp
|
docstamp/inkscape.py
|
https://github.com/PythonSanSebastian/docstamp/blob/b43808f2e15351b0b2f0b7eade9c7ef319c9e646/docstamp/inkscape.py#L98-L102
|
def svg2png(svg_file_path, png_file_path, dpi=150, inkscape_binpath=None):
""" Transform SVG file to PNG file
"""
return inkscape_export(svg_file_path, png_file_path, export_flag="-e",
dpi=dpi, inkscape_binpath=inkscape_binpath)
|
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"svg2png",
"(",
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",",
"png_file_path",
",",
"dpi",
"=",
"150",
",",
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",",
"export_flag",
"=",
"\"-e\"",
",",
"dpi",
"=",
"dpi",
",",
"inkscape_binpath",
"=",
"inkscape_binpath",
")"
] |
Transform SVG file to PNG file
|
[
"Transform",
"SVG",
"file",
"to",
"PNG",
"file"
] |
python
|
test
|
xym-tool/xym
|
xym/xym.py
|
https://github.com/xym-tool/xym/blob/48984e6bd41595df8f383e6dc7e6eedfecc96898/xym/xym.py#L360-L373
|
def strip_empty_lines_backward(self, model, max_lines_to_strip):
"""
Strips empty lines preceding the line that is currently being parsed. This
fucntion is called when the parser encounters a Footer.
:param model: lines that were added to the model up to this point
:param line_num: the number of teh line being parsed
:param max_lines_to_strip: max number of lines to strip from the model
:return: None
"""
for l in range(0, max_lines_to_strip):
if model[-1][0].strip(' \r\n\t\f') != '':
return
self.debug_print_strip_msg(model[-1][1] - 1, model[-1][0])
model.pop()
|
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Strips empty lines preceding the line that is currently being parsed. This
fucntion is called when the parser encounters a Footer.
:param model: lines that were added to the model up to this point
:param line_num: the number of teh line being parsed
:param max_lines_to_strip: max number of lines to strip from the model
:return: None
|
[
"Strips",
"empty",
"lines",
"preceding",
"the",
"line",
"that",
"is",
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".",
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"to",
"strip",
"from",
"the",
"model",
":",
"return",
":",
"None"
] |
python
|
train
|
h2oai/h2o-3
|
h2o-py/h2o/model/model_base.py
|
https://github.com/h2oai/h2o-3/blob/dd62aaa1e7f680a8b16ee14bc66b0fb5195c2ad8/h2o-py/h2o/model/model_base.py#L840-L853
|
def save_model_details(self, path="", force=False):
"""
Save Model Details of an H2O Model in JSON Format to disk.
:param model: The model object to save.
:param path: a path to save the model details at (hdfs, s3, local)
:param force: if True overwrite destination directory in case it exists, or throw exception if set to False.
:returns str: the path of the saved model details
"""
assert_is_type(path, str)
assert_is_type(force, bool)
path = os.path.join(os.getcwd() if path == "" else path, self.model_id + ".json")
return h2o.api("GET /99/Models/%s/json" % self.model_id, data={"dir": path, "force": force})["dir"]
|
[
"def",
"save_model_details",
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",",
"path",
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"force",
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",",
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":",
"path",
",",
"\"force\"",
":",
"force",
"}",
")",
"[",
"\"dir\"",
"]"
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Save Model Details of an H2O Model in JSON Format to disk.
:param model: The model object to save.
:param path: a path to save the model details at (hdfs, s3, local)
:param force: if True overwrite destination directory in case it exists, or throw exception if set to False.
:returns str: the path of the saved model details
|
[
"Save",
"Model",
"Details",
"of",
"an",
"H2O",
"Model",
"in",
"JSON",
"Format",
"to",
"disk",
"."
] |
python
|
test
|
mixcloud/django-experiments
|
experiments/utils.py
|
https://github.com/mixcloud/django-experiments/blob/1f45e9f8a108b51e44918daa647269b2b8d43f1d/experiments/utils.py#L160-L177
|
def visit(self):
"""Record that the user has visited the site for the purposes of retention tracking"""
for enrollment in self._get_all_enrollments():
if enrollment.experiment.is_displaying_alternatives():
# We have two different goals, VISIT_NOT_PRESENT_COUNT_GOAL and VISIT_PRESENT_COUNT_GOAL.
# VISIT_PRESENT_COUNT_GOAL will avoid firing on the first time we set last_seen as it is assumed that the user is
# on the page and therefore it would automatically trigger and be valueless.
# This should be used for experiments when we enroll the user as part of the pageview,
# alternatively we can use the NOT_PRESENT GOAL which will increment on the first pageview,
# this is mainly useful for notification actions when the users isn't initially present.
if not enrollment.last_seen:
self._experiment_goal(enrollment.experiment, enrollment.alternative, conf.VISIT_NOT_PRESENT_COUNT_GOAL, 1)
self._set_last_seen(enrollment.experiment, now())
elif now() - enrollment.last_seen >= timedelta(hours=conf.SESSION_LENGTH):
self._experiment_goal(enrollment.experiment, enrollment.alternative, conf.VISIT_NOT_PRESENT_COUNT_GOAL, 1)
self._experiment_goal(enrollment.experiment, enrollment.alternative, conf.VISIT_PRESENT_COUNT_GOAL, 1)
self._set_last_seen(enrollment.experiment, now())
|
[
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"if",
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".",
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"is_displaying_alternatives",
"(",
")",
":",
"# We have two different goals, VISIT_NOT_PRESENT_COUNT_GOAL and VISIT_PRESENT_COUNT_GOAL.",
"# VISIT_PRESENT_COUNT_GOAL will avoid firing on the first time we set last_seen as it is assumed that the user is",
"# on the page and therefore it would automatically trigger and be valueless.",
"# This should be used for experiments when we enroll the user as part of the pageview,",
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")"
] |
Record that the user has visited the site for the purposes of retention tracking
|
[
"Record",
"that",
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"user",
"has",
"visited",
"the",
"site",
"for",
"the",
"purposes",
"of",
"retention",
"tracking"
] |
python
|
train
|
pyBookshelf/bookshelf
|
bookshelf/api_v1.py
|
https://github.com/pyBookshelf/bookshelf/blob/a6770678e735de95b194f6e6989223970db5f654/bookshelf/api_v1.py#L618-L670
|
def _create_server_rackspace(region,
access_key_id,
secret_access_key,
disk_name,
disk_size,
ami,
key_pair,
instance_type,
username,
instance_name,
tags={},
security_groups=None):
"""
Creates Rackspace Instance and saves it state in a local json file
"""
nova = connect_to_rackspace(region, access_key_id, secret_access_key)
log_yellow("Creating Rackspace instance...")
flavor = nova.flavors.find(name=instance_type)
image = nova.images.find(name=ami)
server = nova.servers.create(name=instance_name,
flavor=flavor.id,
image=image.id,
region=region,
availability_zone=region,
key_name=key_pair)
while server.status == 'BUILD':
log_yellow("Waiting for build to finish...")
sleep(5)
server = nova.servers.get(server.id)
# check for errors
if server.status != 'ACTIVE':
log_red("Error creating rackspace instance")
exit(1)
# the server was assigned IPv4 and IPv6 addresses, locate the IPv4 address
ip_address = server.accessIPv4
if ip_address is None:
log_red('No IP address assigned')
exit(1)
wait_for_ssh(ip_address)
log_green('New server with IP address {0}.'.format(ip_address))
# finally save the details or our new instance into the local state file
save_rackspace_state_locally(instance_id=server.id,
region=region,
username=username,
access_key_id=access_key_id,
secret_access_key=secret_access_key)
|
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"secret_access_key",
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")"
] |
Creates Rackspace Instance and saves it state in a local json file
|
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"and",
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"it",
"state",
"in",
"a",
"local",
"json",
"file"
] |
python
|
train
|
bjmorgan/vasppy
|
vasppy/cell.py
|
https://github.com/bjmorgan/vasppy/blob/cc2d1449697b17ee1c43715a02cddcb1139a6834/vasppy/cell.py#L137-L148
|
def angles( self ):
"""
The cell angles (in degrees).
Args:
None
Returns:
(list(alpha,beta,gamma)): The cell angles.
"""
( a, b, c ) = [ row for row in self.matrix ]
return [ angle( b, c ), angle( a, c ), angle( a, b ) ]
|
[
"def",
"angles",
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":",
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",",
"c",
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"=",
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"]",
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"(",
"a",
",",
"c",
")",
",",
"angle",
"(",
"a",
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"b",
")",
"]"
] |
The cell angles (in degrees).
Args:
None
Returns:
(list(alpha,beta,gamma)): The cell angles.
|
[
"The",
"cell",
"angles",
"(",
"in",
"degrees",
")",
"."
] |
python
|
train
|
harvard-nrg/yaxil
|
yaxil/bids/__init__.py
|
https://github.com/harvard-nrg/yaxil/blob/af594082258e62d1904d6e6841fce0bb5c0bf309/yaxil/bids/__init__.py#L231-L251
|
def convert(input, output):
'''
Run dcm2niix on input file
'''
dirname = os.path.dirname(output)
if not os.path.exists(dirname):
os.makedirs(dirname)
basename = os.path.basename(output)
basename = re.sub('.nii(.gz)?', '', basename)
dcm2niix = commons.which('dcm2niix')
cmd = [
'dcm2niix',
'-s', 'y',
'-b', 'y',
'-z', 'y',
'-f', basename,
'-o', dirname,
input
]
logger.debug(cmd)
sp.check_output(cmd)
|
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"(",
"cmd",
")"
] |
Run dcm2niix on input file
|
[
"Run",
"dcm2niix",
"on",
"input",
"file"
] |
python
|
train
|
kivy/python-for-android
|
pythonforandroid/bootstraps/pygame/build/buildlib/jinja2.egg/jinja2/parser.py
|
https://github.com/kivy/python-for-android/blob/8e0e8056bc22e4d5bd3398a6b0301f38ff167933/pythonforandroid/bootstraps/pygame/build/buildlib/jinja2.egg/jinja2/parser.py#L168-L174
|
def parse_set(self):
"""Parse an assign statement."""
lineno = next(self.stream).lineno
target = self.parse_assign_target()
self.stream.expect('assign')
expr = self.parse_tuple()
return nodes.Assign(target, expr, lineno=lineno)
|
[
"def",
"parse_set",
"(",
"self",
")",
":",
"lineno",
"=",
"next",
"(",
"self",
".",
"stream",
")",
".",
"lineno",
"target",
"=",
"self",
".",
"parse_assign_target",
"(",
")",
"self",
".",
"stream",
".",
"expect",
"(",
"'assign'",
")",
"expr",
"=",
"self",
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"parse_tuple",
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")",
"return",
"nodes",
".",
"Assign",
"(",
"target",
",",
"expr",
",",
"lineno",
"=",
"lineno",
")"
] |
Parse an assign statement.
|
[
"Parse",
"an",
"assign",
"statement",
"."
] |
python
|
train
|
LuminosoInsight/luminoso-api-client-python
|
luminoso_api/v4_upload.py
|
https://github.com/LuminosoInsight/luminoso-api-client-python/blob/3bedf2a454aee39214c11fbf556ead3eecc27881/luminoso_api/v4_upload.py#L19-L60
|
def upload_stream(stream, server, account, projname, language=None,
username=None, password=None,
append=False, stage=False):
"""
Given a file-like object containing a JSON stream, upload it to
Luminoso with the given account name and project name.
"""
client = LuminosoClient.connect(server,
username=username, password=password)
if not append:
# If we're not appending to an existing project, create new project.
info = client.post('/projects/' + account, name=projname)
project_id = info['project_id']
print('New project ID:', project_id)
else:
projects = client.get('/projects/' + account, name=projname)
if len(projects) == 0:
print('No such project exists!')
return
if len(projects) > 1:
print('Warning: Multiple projects with name "%s". ' % projname,
end='')
project_id = projects[0]['project_id']
print('Using existing project with id %s.' % project_id)
project = client.change_path('/projects/' + account + '/' + project_id)
counter = 0
for batch in batches(stream, 1000):
counter += 1
documents = list(batch)
project.upload('docs', documents)
print('Uploaded batch #%d' % (counter))
if not stage:
# Calculate the docs into the assoc space.
print('Calculating.')
kwargs = {}
if language is not None:
kwargs = {'language': language}
job_id = project.post('docs/recalculate', **kwargs)
project.wait_for(job_id)
|
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"+",
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"stage",
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"print",
"(",
"'Calculating.'",
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"kwargs",
"=",
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",",
"*",
"*",
"kwargs",
")",
"project",
".",
"wait_for",
"(",
"job_id",
")"
] |
Given a file-like object containing a JSON stream, upload it to
Luminoso with the given account name and project name.
|
[
"Given",
"a",
"file",
"-",
"like",
"object",
"containing",
"a",
"JSON",
"stream",
"upload",
"it",
"to",
"Luminoso",
"with",
"the",
"given",
"account",
"name",
"and",
"project",
"name",
"."
] |
python
|
test
|
gem/oq-engine
|
openquake/hazardlib/sourceconverter.py
|
https://github.com/gem/oq-engine/blob/8294553a0b8aba33fd96437a35065d03547d0040/openquake/hazardlib/sourceconverter.py#L988-L1012
|
def update_source_model(sm_node, fname):
"""
:param sm_node: a sourceModel Node object containing sourceGroups
"""
i = 0
for group in sm_node:
if 'srcs_weights' in group.attrib:
raise InvalidFile('srcs_weights must be removed in %s' % fname)
if not group.tag.endswith('sourceGroup'):
raise InvalidFile('wrong NRML, got %s instead of '
'sourceGroup in %s' % (group.tag, fname))
psrcs = []
others = []
for src in group:
try:
del src.attrib['tectonicRegion'] # make the trt implicit
except KeyError:
pass # already missing
if src.tag.endswith('pointSource'):
psrcs.append(src)
else:
others.append(src)
others.sort(key=lambda src: (src.tag, src['id']))
i, sources = _pointsources2multipoints(psrcs, i)
group.nodes = sources + others
|
[
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"(",
"psrcs",
",",
"i",
")",
"group",
".",
"nodes",
"=",
"sources",
"+",
"others"
] |
:param sm_node: a sourceModel Node object containing sourceGroups
|
[
":",
"param",
"sm_node",
":",
"a",
"sourceModel",
"Node",
"object",
"containing",
"sourceGroups"
] |
python
|
train
|
lsst-sqre/documenteer
|
documenteer/stackdocs/build.py
|
https://github.com/lsst-sqre/documenteer/blob/75f02901a80042b28d074df1cc1dca32eb8e38c8/documenteer/stackdocs/build.py#L228-L246
|
def list_packages_in_eups_table(table_text):
"""List the names of packages that are required by an EUPS table file.
Parameters
----------
table_text : `str`
The text content of an EUPS table file.
Returns
-------
names : `list` [`str`]
List of package names that are required byy the EUPS table file.
"""
logger = logging.getLogger(__name__)
# This pattern matches required product names in EUPS table files.
pattern = re.compile(r'setupRequired\((?P<name>\w+)\)')
listed_packages = [m.group('name') for m in pattern.finditer(table_text)]
logger.debug('Packages listed in the table file: %r', listed_packages)
return listed_packages
|
[
"def",
"list_packages_in_eups_table",
"(",
"table_text",
")",
":",
"logger",
"=",
"logging",
".",
"getLogger",
"(",
"__name__",
")",
"# This pattern matches required product names in EUPS table files.",
"pattern",
"=",
"re",
".",
"compile",
"(",
"r'setupRequired\\((?P<name>\\w+)\\)'",
")",
"listed_packages",
"=",
"[",
"m",
".",
"group",
"(",
"'name'",
")",
"for",
"m",
"in",
"pattern",
".",
"finditer",
"(",
"table_text",
")",
"]",
"logger",
".",
"debug",
"(",
"'Packages listed in the table file: %r'",
",",
"listed_packages",
")",
"return",
"listed_packages"
] |
List the names of packages that are required by an EUPS table file.
Parameters
----------
table_text : `str`
The text content of an EUPS table file.
Returns
-------
names : `list` [`str`]
List of package names that are required byy the EUPS table file.
|
[
"List",
"the",
"names",
"of",
"packages",
"that",
"are",
"required",
"by",
"an",
"EUPS",
"table",
"file",
"."
] |
python
|
train
|
gwastro/pycbc
|
pycbc/workflow/pegasus_workflow.py
|
https://github.com/gwastro/pycbc/blob/7a64cdd104d263f1b6ea0b01e6841837d05a4cb3/pycbc/workflow/pegasus_workflow.py#L151-L159
|
def add_opt(self, opt, value=None):
""" Add a option
"""
if value is not None:
if not isinstance(value, File):
value = str(value)
self._options += [opt, value]
else:
self._options += [opt]
|
[
"def",
"add_opt",
"(",
"self",
",",
"opt",
",",
"value",
"=",
"None",
")",
":",
"if",
"value",
"is",
"not",
"None",
":",
"if",
"not",
"isinstance",
"(",
"value",
",",
"File",
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"=",
"str",
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"self",
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"+=",
"[",
"opt",
",",
"value",
"]",
"else",
":",
"self",
".",
"_options",
"+=",
"[",
"opt",
"]"
] |
Add a option
|
[
"Add",
"a",
"option"
] |
python
|
train
|
binux/pyspider
|
pyspider/libs/response.py
|
https://github.com/binux/pyspider/blob/3fccfabe2b057b7a56d4a4c79dc0dd6cd2239fe9/pyspider/libs/response.py#L150-L163
|
def etree(self):
"""Returns a lxml object of the response's content that can be selected by xpath"""
if not hasattr(self, '_elements'):
try:
parser = lxml.html.HTMLParser(encoding=self.encoding)
self._elements = lxml.html.fromstring(self.content, parser=parser)
except LookupError:
# lxml would raise LookupError when encoding not supported
# try fromstring without encoding instead.
# on windows, unicode is not availabe as encoding for lxml
self._elements = lxml.html.fromstring(self.content)
if isinstance(self._elements, lxml.etree._ElementTree):
self._elements = self._elements.getroot()
return self._elements
|
[
"def",
"etree",
"(",
"self",
")",
":",
"if",
"not",
"hasattr",
"(",
"self",
",",
"'_elements'",
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"lxml",
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"(",
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".",
"getroot",
"(",
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] |
Returns a lxml object of the response's content that can be selected by xpath
|
[
"Returns",
"a",
"lxml",
"object",
"of",
"the",
"response",
"s",
"content",
"that",
"can",
"be",
"selected",
"by",
"xpath"
] |
python
|
train
|
mapmyfitness/jtime
|
jtime/jira_ext.py
|
https://github.com/mapmyfitness/jtime/blob/402fb6b40ac7a78c23fd02fac50c6dbe49e5ebfd/jtime/jira_ext.py#L79-L88
|
def get_datetime_issue_in_progress(self, issue):
"""
If the issue is in progress, gets that most recent time that the issue became 'In Progress'
"""
histories = issue.changelog.histories
for history in reversed(histories):
history_items = history.items
for item in history_items:
if item.field == 'status' and item.toString == "In Progress":
return dateutil.parser.parse(history.created)
|
[
"def",
"get_datetime_issue_in_progress",
"(",
"self",
",",
"issue",
")",
":",
"histories",
"=",
"issue",
".",
"changelog",
".",
"histories",
"for",
"history",
"in",
"reversed",
"(",
"histories",
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"=",
"history",
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"toString",
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":",
"return",
"dateutil",
".",
"parser",
".",
"parse",
"(",
"history",
".",
"created",
")"
] |
If the issue is in progress, gets that most recent time that the issue became 'In Progress'
|
[
"If",
"the",
"issue",
"is",
"in",
"progress",
"gets",
"that",
"most",
"recent",
"time",
"that",
"the",
"issue",
"became",
"In",
"Progress"
] |
python
|
train
|
SeattleTestbed/seash
|
pyreadline/modes/basemode.py
|
https://github.com/SeattleTestbed/seash/blob/40f9d2285662ff8b61e0468b4196acee089b273b/pyreadline/modes/basemode.py#L373-L376
|
def backward_char_extend_selection(self, e): #
u"""Move back a character. """
self.l_buffer.backward_char_extend_selection(self.argument_reset)
self.finalize()
|
[
"def",
"backward_char_extend_selection",
"(",
"self",
",",
"e",
")",
":",
"#\r",
"self",
".",
"l_buffer",
".",
"backward_char_extend_selection",
"(",
"self",
".",
"argument_reset",
")",
"self",
".",
"finalize",
"(",
")"
] |
u"""Move back a character.
|
[
"u",
"Move",
"back",
"a",
"character",
"."
] |
python
|
train
|
fracpete/python-weka-wrapper3
|
python/weka/clusterers.py
|
https://github.com/fracpete/python-weka-wrapper3/blob/d850ab1bdb25fbd5a8d86e99f34a397975425838/python/weka/clusterers.py#L383-L439
|
def main():
"""
Runs a clusterer from the command-line. Calls JVM start/stop automatically.
Use -h to see all options.
"""
parser = argparse.ArgumentParser(
description='Performs clustering from the command-line. Calls JVM start/stop automatically.')
parser.add_argument("-j", metavar="classpath", dest="classpath", help="additional classpath, jars/directories")
parser.add_argument("-X", metavar="heap", dest="heap", help="max heap size for jvm, e.g., 512m")
parser.add_argument("-t", metavar="train", dest="train", required=True, help="training set file")
parser.add_argument("-T", metavar="test", dest="test", help="test set file")
parser.add_argument("-d", metavar="outmodel", dest="outmodel", help="model output file name")
parser.add_argument("-l", metavar="inmodel", dest="inmodel", help="model input file name")
parser.add_argument("-p", metavar="attributes", dest="attributes", help="attribute range")
parser.add_argument("-x", metavar="num folds", dest="numfolds", help="number of folds")
parser.add_argument("-s", metavar="seed", dest="seed", help="seed value for randomization")
parser.add_argument("-c", metavar="class index", dest="classindex", help="1-based class attribute index")
parser.add_argument("-g", metavar="graph", dest="graph", help="graph output file (if supported)")
parser.add_argument("clusterer", help="clusterer classname, e.g., weka.clusterers.SimpleKMeans")
parser.add_argument("option", nargs=argparse.REMAINDER, help="additional clusterer options")
parsed = parser.parse_args()
jars = []
if parsed.classpath is not None:
jars = parsed.classpath.split(os.pathsep)
params = []
if parsed.train is not None:
params.extend(["-t", parsed.train])
if parsed.test is not None:
params.extend(["-T", parsed.test])
if parsed.outmodel is not None:
params.extend(["-d", parsed.outmodel])
if parsed.inmodel is not None:
params.extend(["-l", parsed.inmodel])
if parsed.attributes is not None:
params.extend(["-p", parsed.attributes])
if parsed.numfolds is not None:
params.extend(["-x", parsed.numfolds])
if parsed.seed is not None:
params.extend(["-s", parsed.seed])
if parsed.classindex is not None:
params.extend(["-c", parsed.classindex])
if parsed.graph is not None:
params.extend(["-g", parsed.graph])
jvm.start(jars, max_heap_size=parsed.heap, packages=True)
logger.debug("Commandline: " + join_options(sys.argv[1:]))
try:
clusterer = Clusterer(classname=parsed.clusterer)
if len(parsed.option) > 0:
clusterer.options = parsed.option
print(ClusterEvaluation.evaluate_clusterer(clusterer, params))
except Exception as e:
print(e)
finally:
jvm.stop()
|
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"(",
"e",
")",
"finally",
":",
"jvm",
".",
"stop",
"(",
")"
] |
Runs a clusterer from the command-line. Calls JVM start/stop automatically.
Use -h to see all options.
|
[
"Runs",
"a",
"clusterer",
"from",
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"-",
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"Calls",
"JVM",
"start",
"/",
"stop",
"automatically",
".",
"Use",
"-",
"h",
"to",
"see",
"all",
"options",
"."
] |
python
|
train
|
maas/python-libmaas
|
maas/client/viscera/machines.py
|
https://github.com/maas/python-libmaas/blob/4092c68ef7fb1753efc843569848e2bcc3415002/maas/client/viscera/machines.py#L610-L622
|
async def mark_broken(self, *, comment: str = None):
"""Mark broken.
:param comment: Reason machine is broken.
:type comment: `str`
"""
params = {
"system_id": self.system_id
}
if comment:
params["comment"] = comment
self._data = await self._handler.mark_broken(**params)
return self
|
[
"async",
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",",
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",",
"comment",
":",
"str",
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"_handler",
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"return",
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] |
Mark broken.
:param comment: Reason machine is broken.
:type comment: `str`
|
[
"Mark",
"broken",
"."
] |
python
|
train
|
sibirrer/lenstronomy
|
lenstronomy/LensModel/numerical_profile_integrals.py
|
https://github.com/sibirrer/lenstronomy/blob/4edb100a4f3f4fdc4fac9b0032d2b0283d0aa1d6/lenstronomy/LensModel/numerical_profile_integrals.py#L56-L71
|
def mass_enclosed_2d(self, r, kwargs_profile):
"""
computes the mass enclosed the projected line-of-sight
:param r: radius (arcsec)
:param kwargs_profile: keyword argument list with lens model parameters
:return: projected mass enclosed radius r
"""
kwargs = copy.deepcopy(kwargs_profile)
try:
del kwargs['center_x']
del kwargs['center_y']
except:
pass
# integral of self.density_2d(x)* 2*np.pi * x *dx, 0, r
out = integrate.quad(lambda x: self.density_2d(x, kwargs)*2*np.pi*x, 0, r)
return out[0]
|
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computes the mass enclosed the projected line-of-sight
:param r: radius (arcsec)
:param kwargs_profile: keyword argument list with lens model parameters
:return: projected mass enclosed radius r
|
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"computes",
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":",
"return",
":",
"projected",
"mass",
"enclosed",
"radius",
"r"
] |
python
|
train
|
h2oai/h2o-3
|
h2o-py/h2o/model/model_base.py
|
https://github.com/h2oai/h2o-3/blob/dd62aaa1e7f680a8b16ee14bc66b0fb5195c2ad8/h2o-py/h2o/model/model_base.py#L321-L354
|
def model_performance(self, test_data=None, train=False, valid=False, xval=False):
"""
Generate model metrics for this model on test_data.
:param H2OFrame test_data: Data set for which model metrics shall be computed against. All three of train,
valid and xval arguments are ignored if test_data is not None.
:param bool train: Report the training metrics for the model.
:param bool valid: Report the validation metrics for the model.
:param bool xval: Report the cross-validation metrics for the model. If train and valid are True, then it
defaults to True.
:returns: An object of class H2OModelMetrics.
"""
if test_data is None:
if not train and not valid and not xval: train = True # default to train
if train: return self._model_json["output"]["training_metrics"]
if valid: return self._model_json["output"]["validation_metrics"]
if xval: return self._model_json["output"]["cross_validation_metrics"]
else: # cases dealing with test_data not None
if not isinstance(test_data, h2o.H2OFrame):
raise ValueError("`test_data` must be of type H2OFrame. Got: " + type(test_data))
if (self._model_json["response_column_name"] != None) and not(self._model_json["response_column_name"] in test_data.names):
print("WARNING: Model metrics cannot be calculated and metric_json is empty due to the absence of the response column in your dataset.")
return
res = h2o.api("POST /3/ModelMetrics/models/%s/frames/%s" % (self.model_id, test_data.frame_id))
# FIXME need to do the client-side filtering... (PUBDEV-874)
raw_metrics = None
for mm in res["model_metrics"]:
if mm["frame"] is not None and mm["frame"]["name"] == test_data.frame_id:
raw_metrics = mm
break
return self._metrics_class(raw_metrics, algo=self._model_json["algo"])
|
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"(",
"raw_metrics",
",",
"algo",
"=",
"self",
".",
"_model_json",
"[",
"\"algo\"",
"]",
")"
] |
Generate model metrics for this model on test_data.
:param H2OFrame test_data: Data set for which model metrics shall be computed against. All three of train,
valid and xval arguments are ignored if test_data is not None.
:param bool train: Report the training metrics for the model.
:param bool valid: Report the validation metrics for the model.
:param bool xval: Report the cross-validation metrics for the model. If train and valid are True, then it
defaults to True.
:returns: An object of class H2OModelMetrics.
|
[
"Generate",
"model",
"metrics",
"for",
"this",
"model",
"on",
"test_data",
"."
] |
python
|
test
|
maweigert/gputools
|
gputools/fft/oclfft.py
|
https://github.com/maweigert/gputools/blob/6ab26efeb05dceef74cf13aadeeeb9b009b529dd/gputools/fft/oclfft.py#L13-L21
|
def _convert_axes_to_absolute(dshape, axes):
"""axes = (-2,-1) does not work in reikna, so we have to convetr that"""
if axes is None:
return None
elif isinstance(axes, (tuple, list)):
return tuple(np.arange(len(dshape))[list(axes)])
else:
raise NotImplementedError("axes %s is of unsupported type %s "%(str(axes), type(axes)))
|
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")",
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",",
"type",
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")",
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] |
axes = (-2,-1) does not work in reikna, so we have to convetr that
|
[
"axes",
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"(",
"-",
"2",
"-",
"1",
")",
"does",
"not",
"work",
"in",
"reikna",
"so",
"we",
"have",
"to",
"convetr",
"that"
] |
python
|
train
|
TestInABox/stackInABox
|
stackinabox/services/service.py
|
https://github.com/TestInABox/stackInABox/blob/63ee457401e9a88d987f85f513eb512dcb12d984/stackinabox/services/service.py#L66-L92
|
def set_subservice(self, obj):
"""Add a sub-service object.
:param obj: stackinabox.services.StackInABoxService instance
:raises: RouteAlreadyRegisteredError if the route is already registered
:returns: n/a
"""
# ensure there is not already a sub-service
if self.obj is not None:
raise RouteAlreadyRegisteredError(
'Service Router ({0} - {1}): Route {2} already has a '
'sub-service handler'
.format(id(self), self.service_name, self.uri))
# warn if any methods are already registered
if len(self.methods):
logger.debug(
'WARNING: Service Router ({0} - {1}): Methods detected '
'on Route {2}. Sub-Service {3} may be hidden.'
.format(id(self), self.service_name, self.uri, obj.name))
# Ensure we do not have any circular references
assert(obj != self.parent_obj)
# if no errors, save the object and update the URI
self.obj = obj
self.obj.base_url = '{0}/{1}'.format(self.uri, self.service_name)
|
[
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"(",
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")",
":",
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"'{0}/{1}'",
".",
"format",
"(",
"self",
".",
"uri",
",",
"self",
".",
"service_name",
")"
] |
Add a sub-service object.
:param obj: stackinabox.services.StackInABoxService instance
:raises: RouteAlreadyRegisteredError if the route is already registered
:returns: n/a
|
[
"Add",
"a",
"sub",
"-",
"service",
"object",
"."
] |
python
|
train
|
elastic/elasticsearch-py
|
elasticsearch/client/xpack/ml.py
|
https://github.com/elastic/elasticsearch-py/blob/2aab285c8f506f3863cbdaba3c90a685c510ba00/elasticsearch/client/xpack/ml.py#L880-L903
|
def update_model_snapshot(self, job_id, snapshot_id, body, params=None):
"""
`<http://www.elastic.co/guide/en/elasticsearch/reference/current/ml-update-snapshot.html>`_
:arg job_id: The ID of the job to fetch
:arg snapshot_id: The ID of the snapshot to update
:arg body: The model snapshot properties to update
"""
for param in (job_id, snapshot_id, body):
if param in SKIP_IN_PATH:
raise ValueError("Empty value passed for a required argument.")
return self.transport.perform_request(
"POST",
_make_path(
"_ml",
"anomaly_detectors",
job_id,
"model_snapshots",
snapshot_id,
"_update",
),
params=params,
body=body,
)
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`<http://www.elastic.co/guide/en/elasticsearch/reference/current/ml-update-snapshot.html>`_
:arg job_id: The ID of the job to fetch
:arg snapshot_id: The ID of the snapshot to update
:arg body: The model snapshot properties to update
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"/",
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"-",
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"-",
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".",
"html",
">",
"_"
] |
python
|
train
|
awslabs/sockeye
|
sockeye/image_captioning/encoder.py
|
https://github.com/awslabs/sockeye/blob/5d64a1ee1ef3cbba17c6d1d94bc061020c43f6ab/sockeye/image_captioning/encoder.py#L71-L90
|
def get_image_cnn_encoder(config: ImageLoadedCnnEncoderConfig) -> 'Encoder':
"""
Creates a image encoder.
:param config: Configuration for image encoder.
:return: Encoder instance.
"""
encoders = list() # type: List[Encoder]
max_seq_len = config.encoded_seq_len
if not config.no_global_descriptor:
max_seq_len += 1
encoders.append(get_positional_embedding(config.positional_embedding_type,
config.num_embed,
max_seq_len=max_seq_len,
fixed_pos_embed_scale_up_input=False,
fixed_pos_embed_scale_down_positions=True,
prefix=C.SOURCE_POSITIONAL_EMBEDDING_PREFIX))
encoders.append(ImageLoadedCnnEncoder(config=config))
return EncoderSequence(encoders)
|
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Creates a image encoder.
:param config: Configuration for image encoder.
:return: Encoder instance.
|
[
"Creates",
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] |
python
|
train
|
MartinThoma/memtop
|
memtop/__init__.py
|
https://github.com/MartinThoma/memtop/blob/504d251f1951922db84883c2e660ba7e754d1546/memtop/__init__.py#L93-L115
|
def graph_format(new_mem, old_mem, is_firstiteration=True):
"""Show changes graphically in memory consumption"""
if is_firstiteration:
output = " n/a "
elif new_mem - old_mem > 50000000:
output = " +++++"
elif new_mem - old_mem > 20000000:
output = " ++++ "
elif new_mem - old_mem > 5000000:
output = " +++ "
elif new_mem - old_mem > 1000000:
output = " ++ "
elif new_mem - old_mem > 50000:
output = " + "
elif old_mem - new_mem > 10000000:
output = "--- "
elif old_mem - new_mem > 2000000:
output = " -- "
elif old_mem - new_mem > 100000:
output = " - "
else:
output = " "
return output
|
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Show changes graphically in memory consumption
|
[
"Show",
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] |
python
|
train
|
facebook/codemod
|
codemod/terminal_helper.py
|
https://github.com/facebook/codemod/blob/78bb627792fc8a5253baa9cd9d8160533b16fd85/codemod/terminal_helper.py#L74-L83
|
def _terminal_use_capability(capability_name):
"""
If the terminal supports the given capability, output it. Return whether
it was output.
"""
curses.setupterm()
capability = curses.tigetstr(capability_name)
if capability:
sys.stdout.write(_unicode(capability))
return bool(capability)
|
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")",
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If the terminal supports the given capability, output it. Return whether
it was output.
|
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"given",
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"output",
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"Return",
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"output",
"."
] |
python
|
train
|
textbook/atmdb
|
atmdb/utils.py
|
https://github.com/textbook/atmdb/blob/cab14547d2e777a1e26c2560266365c484855789/atmdb/utils.py#L77-L101
|
async def _overlap(items, overlap_attr, client=None, get_method=None):
"""Generic overlap implementation.
Arguments:
item (:py:class:`collections.abc.Sequence`): The objects to
find overlaps for.
overlap_attr (:py:class:`str`): The attribute of the items to use
as input for the overlap.
client (:py:class:`~.TMDbClient`, optional): The TMDb client
to extract additional information about the overlap.
get_method (:py:class:`str`, optional): The method of the
client to use for extracting additional information.
Returns:
:py:class:`list`: The relevant result objects.
"""
overlap = set.intersection(*(getattr(item, overlap_attr) for item in items))
if client is None or get_method is None:
return overlap
results = []
for item in overlap:
result = await getattr(client, get_method)(id_=item.id_)
results.append(result)
return results
|
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"id_",
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Generic overlap implementation.
Arguments:
item (:py:class:`collections.abc.Sequence`): The objects to
find overlaps for.
overlap_attr (:py:class:`str`): The attribute of the items to use
as input for the overlap.
client (:py:class:`~.TMDbClient`, optional): The TMDb client
to extract additional information about the overlap.
get_method (:py:class:`str`, optional): The method of the
client to use for extracting additional information.
Returns:
:py:class:`list`: The relevant result objects.
|
[
"Generic",
"overlap",
"implementation",
"."
] |
python
|
train
|
onjin/ntv
|
ntv/web.py
|
https://github.com/onjin/ntv/blob/9baa9cfdff9eca0ebd12b6c456951345a269039f/ntv/web.py#L31-L60
|
def result_to_dict(raw_result):
"""
Parse raw result from fetcher into readable dictionary
Args:
raw_result (dict) - raw data from `fetcher`
Returns:
dict - readable dictionary
"""
result = {}
for channel_index, channel in enumerate(raw_result):
channel_id, channel_name = channel[0], channel[1]
channel_result = {
'id': channel_id,
'name': channel_name,
'movies': []
}
for movie in channel[2]:
channel_result['movies'].append({
'title': movie[1],
'start_time': datetime.fromtimestamp(movie[2]),
'end_time': datetime.fromtimestamp(movie[2] + movie[3]),
'inf': True if movie[3] else False,
})
result[channel_id] = channel_result
return result
|
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Parse raw result from fetcher into readable dictionary
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|
[
"Parse",
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"dictionary"
] |
python
|
train
|
chaoss/grimoirelab-perceval-mozilla
|
perceval/backends/mozilla/crates.py
|
https://github.com/chaoss/grimoirelab-perceval-mozilla/blob/4514f8d3d609d3cb79d83c72d51fcc4b4a7daeb4/perceval/backends/mozilla/crates.py#L204-L211
|
def __fetch_crate_owner_team(self, crate_id):
"""Get crate team owner"""
raw_owner_team = self.client.crate_attribute(crate_id, 'owner_team')
owner_team = json.loads(raw_owner_team)
return owner_team
|
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"owner_team",
"=",
"json",
".",
"loads",
"(",
"raw_owner_team",
")",
"return",
"owner_team"
] |
Get crate team owner
|
[
"Get",
"crate",
"team",
"owner"
] |
python
|
test
|
src-d/modelforge
|
modelforge/meta.py
|
https://github.com/src-d/modelforge/blob/4f73c2bf0318261ac01bc8b6c0d4250a5d303418/modelforge/meta.py#L24-L53
|
def generate_new_meta(name: str, description: str, vendor: str, license: str) -> dict:
"""
Create the metadata tree for the given model name and the list of dependencies.
:param name: Name of the model.
:param description: Description of the model.
:param vendor: Name of the party which is responsible for support of the model.
:param license: License identifier.
:return: dict with the metadata.
"""
check_license(license)
return {
"code": None,
"created_at": get_datetime_now(),
"datasets": [],
"dependencies": [],
"description": description,
"vendor": vendor,
"environment": collect_environment_without_packages(),
"extra": None,
"license": license,
"metrics": {},
"model": name,
"parent": None,
"references": [],
"series": None,
"tags": [],
"uuid": str(uuid.uuid4()),
"version": [1, 0, 0],
}
|
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Create the metadata tree for the given model name and the list of dependencies.
:param name: Name of the model.
:param description: Description of the model.
:param vendor: Name of the party which is responsible for support of the model.
:param license: License identifier.
:return: dict with the metadata.
|
[
"Create",
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"tree",
"for",
"the",
"given",
"model",
"name",
"and",
"the",
"list",
"of",
"dependencies",
"."
] |
python
|
train
|
gwastro/pycbc-glue
|
pycbc_glue/ligolw/array.py
|
https://github.com/gwastro/pycbc-glue/blob/a3e906bae59fbfd707c3ff82e5d008d939ec5e24/pycbc_glue/ligolw/array.py#L154-L162
|
def get_array(xmldoc, name):
"""
Scan xmldoc for an array named name. Raises ValueError if not
exactly 1 such array is found.
"""
arrays = getArraysByName(xmldoc, name)
if len(arrays) != 1:
raise ValueError("document must contain exactly one %s array" % StripArrayName(name))
return arrays[0]
|
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"%",
"StripArrayName",
"(",
"name",
")",
")",
"return",
"arrays",
"[",
"0",
"]"
] |
Scan xmldoc for an array named name. Raises ValueError if not
exactly 1 such array is found.
|
[
"Scan",
"xmldoc",
"for",
"an",
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"named",
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"ValueError",
"if",
"not",
"exactly",
"1",
"such",
"array",
"is",
"found",
"."
] |
python
|
train
|
saltstack/salt
|
salt/modules/nspawn.py
|
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/modules/nspawn.py#L834-L859
|
def list_all():
'''
Lists all nspawn containers
CLI Example:
.. code-block:: bash
salt myminion nspawn.list_all
'''
ret = []
if _sd_version() >= 219:
for line in _machinectl('list-images')['stdout'].splitlines():
try:
ret.append(line.split()[0])
except IndexError:
continue
else:
rootdir = _root()
try:
for dirname in os.listdir(rootdir):
if os.path.isdir(os.path.join(rootdir, dirname)):
ret.append(dirname)
except OSError:
pass
return ret
|
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"dirname",
")",
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"OSError",
":",
"pass",
"return",
"ret"
] |
Lists all nspawn containers
CLI Example:
.. code-block:: bash
salt myminion nspawn.list_all
|
[
"Lists",
"all",
"nspawn",
"containers"
] |
python
|
train
|
KelSolaar/Umbra
|
umbra/preferences.py
|
https://github.com/KelSolaar/Umbra/blob/66f45f08d9d723787f1191989f8b0dda84b412ce/umbra/preferences.py#L206-L223
|
def set_key(self, section, key, value):
"""
Stores given key in settings file.
:param section: Current section to save the key into.
:type section: unicode
:param key: Current key to save.
:type key: unicode
:param value: Current key value to save.
:type value: object
"""
LOGGER.debug("> Saving '{0}' in '{1}' section with value: '{2}' in settings file.".format(
key, section, foundations.strings.to_string(value)))
self.__settings.beginGroup(section)
self.__settings.setValue(key, QVariant(value))
self.__settings.endGroup()
|
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"debug",
"(",
"\"> Saving '{0}' in '{1}' section with value: '{2}' in settings file.\"",
".",
"format",
"(",
"key",
",",
"section",
",",
"foundations",
".",
"strings",
".",
"to_string",
"(",
"value",
")",
")",
")",
"self",
".",
"__settings",
".",
"beginGroup",
"(",
"section",
")",
"self",
".",
"__settings",
".",
"setValue",
"(",
"key",
",",
"QVariant",
"(",
"value",
")",
")",
"self",
".",
"__settings",
".",
"endGroup",
"(",
")"
] |
Stores given key in settings file.
:param section: Current section to save the key into.
:type section: unicode
:param key: Current key to save.
:type key: unicode
:param value: Current key value to save.
:type value: object
|
[
"Stores",
"given",
"key",
"in",
"settings",
"file",
"."
] |
python
|
train
|
python-security/pyt
|
pyt/cfg/expr_visitor.py
|
https://github.com/python-security/pyt/blob/efc0cfb716e40e0c8df4098f1cc8cf43723cd31f/pyt/cfg/expr_visitor.py#L247-L329
|
def save_def_args_in_temp(
self,
call_args,
def_args,
line_number,
saved_function_call_index,
first_node
):
"""Save the arguments of the definition being called. Visit the arguments if they're calls.
Args:
call_args(list[ast.Name]): Of the call being made.
def_args(ast_helper.Arguments): Of the definition being called.
line_number(int): Of the call being made.
saved_function_call_index(int): Unique number for each call.
first_node(EntryOrExitNode or None or RestoreNode): Used to connect previous statements to this function.
Returns:
args_mapping(dict): A mapping of call argument to definition argument.
first_node(EntryOrExitNode or None or RestoreNode): Used to connect previous statements to this function.
"""
args_mapping = dict()
last_return_value_of_nested_call = None
# Create e.g. temp_N_def_arg1 = call_arg1_label_visitor.result for each argument
for i, call_arg in enumerate(call_args):
# If this results in an IndexError it is invalid Python
def_arg_temp_name = 'temp_' + str(saved_function_call_index) + '_' + def_args[i]
return_value_of_nested_call = None
if isinstance(call_arg, ast.Call):
return_value_of_nested_call = self.visit(call_arg)
restore_node = RestoreNode(
def_arg_temp_name + ' = ' + return_value_of_nested_call.left_hand_side,
def_arg_temp_name,
[return_value_of_nested_call.left_hand_side],
line_number=line_number,
path=self.filenames[-1]
)
if return_value_of_nested_call in self.blackbox_assignments:
self.blackbox_assignments.add(restore_node)
else:
call_arg_label_visitor = LabelVisitor()
call_arg_label_visitor.visit(call_arg)
call_arg_rhs_visitor = RHSVisitor()
call_arg_rhs_visitor.visit(call_arg)
restore_node = RestoreNode(
def_arg_temp_name + ' = ' + call_arg_label_visitor.result,
def_arg_temp_name,
call_arg_rhs_visitor.result,
line_number=line_number,
path=self.filenames[-1]
)
# If there are no saved variables, then this is the first node
if not first_node:
first_node = restore_node
if isinstance(call_arg, ast.Call):
if last_return_value_of_nested_call:
# connect inner to other_inner in e.g. `outer(inner(image_name), other_inner(image_name))`
if isinstance(return_value_of_nested_call, BBorBInode):
last_return_value_of_nested_call.connect(return_value_of_nested_call)
else:
last_return_value_of_nested_call.connect(return_value_of_nested_call.first_node)
else:
# I should only set this once per loop, inner in e.g. `outer(inner(image_name), other_inner(image_name))`
# (inner_most_call is used when predecessor is a ControlFlowNode in connect_control_flow_node)
if isinstance(return_value_of_nested_call, BBorBInode):
first_node.inner_most_call = return_value_of_nested_call
else:
first_node.inner_most_call = return_value_of_nested_call.first_node
# We purposefully should not set this as the first_node of return_value_of_nested_call, last makes sense
last_return_value_of_nested_call = return_value_of_nested_call
self.connect_if_allowed(self.nodes[-1], restore_node)
self.nodes.append(restore_node)
if isinstance(call_arg, ast.Call):
args_mapping[return_value_of_nested_call.left_hand_side] = def_args[i]
else:
args_mapping[def_args[i]] = call_arg_label_visitor.result
return (args_mapping, first_node)
|
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"result",
"return",
"(",
"args_mapping",
",",
"first_node",
")"
] |
Save the arguments of the definition being called. Visit the arguments if they're calls.
Args:
call_args(list[ast.Name]): Of the call being made.
def_args(ast_helper.Arguments): Of the definition being called.
line_number(int): Of the call being made.
saved_function_call_index(int): Unique number for each call.
first_node(EntryOrExitNode or None or RestoreNode): Used to connect previous statements to this function.
Returns:
args_mapping(dict): A mapping of call argument to definition argument.
first_node(EntryOrExitNode or None or RestoreNode): Used to connect previous statements to this function.
|
[
"Save",
"the",
"arguments",
"of",
"the",
"definition",
"being",
"called",
".",
"Visit",
"the",
"arguments",
"if",
"they",
"re",
"calls",
"."
] |
python
|
train
|
askedrelic/libgreader
|
libgreader/googlereader.py
|
https://github.com/askedrelic/libgreader/blob/7b668ee291c2464ea172ef44393100c369efa970/libgreader/googlereader.py#L235-L251
|
def subscribe(self, feedUrl):
"""
Adds a feed to the top-level subscription list
Ubscribing seems idempotent, you can subscribe multiple times
without error
returns True or throws HTTPError
"""
response = self.httpPost(
ReaderUrl.SUBSCRIPTION_EDIT_URL,
{'ac':'subscribe', 's': feedUrl})
# FIXME - need better return API
if response and 'OK' in response:
return True
else:
return False
|
[
"def",
"subscribe",
"(",
"self",
",",
"feedUrl",
")",
":",
"response",
"=",
"self",
".",
"httpPost",
"(",
"ReaderUrl",
".",
"SUBSCRIPTION_EDIT_URL",
",",
"{",
"'ac'",
":",
"'subscribe'",
",",
"'s'",
":",
"feedUrl",
"}",
")",
"# FIXME - need better return API",
"if",
"response",
"and",
"'OK'",
"in",
"response",
":",
"return",
"True",
"else",
":",
"return",
"False"
] |
Adds a feed to the top-level subscription list
Ubscribing seems idempotent, you can subscribe multiple times
without error
returns True or throws HTTPError
|
[
"Adds",
"a",
"feed",
"to",
"the",
"top",
"-",
"level",
"subscription",
"list"
] |
python
|
train
|
androguard/androguard
|
androguard/core/androconf.py
|
https://github.com/androguard/androguard/blob/984c0d981be2950cf0451e484f7b0d4d53bc4911/androguard/core/androconf.py#L339-L346
|
def color_range(startcolor, goalcolor, steps):
"""
wrapper for interpolate_tuple that accepts colors as html ("#CCCCC" and such)
"""
start_tuple = make_color_tuple(startcolor)
goal_tuple = make_color_tuple(goalcolor)
return interpolate_tuple(start_tuple, goal_tuple, steps)
|
[
"def",
"color_range",
"(",
"startcolor",
",",
"goalcolor",
",",
"steps",
")",
":",
"start_tuple",
"=",
"make_color_tuple",
"(",
"startcolor",
")",
"goal_tuple",
"=",
"make_color_tuple",
"(",
"goalcolor",
")",
"return",
"interpolate_tuple",
"(",
"start_tuple",
",",
"goal_tuple",
",",
"steps",
")"
] |
wrapper for interpolate_tuple that accepts colors as html ("#CCCCC" and such)
|
[
"wrapper",
"for",
"interpolate_tuple",
"that",
"accepts",
"colors",
"as",
"html",
"(",
"#CCCCC",
"and",
"such",
")"
] |
python
|
train
|
doakey3/DashTable
|
dashtable/html2data/headers_present.py
|
https://github.com/doakey3/DashTable/blob/744cfb6a717fa75a8092c83ebcd49b2668023681/dashtable/html2data/headers_present.py#L1-L28
|
def headers_present(html_string):
"""
Checks if the html table contains headers and returns True/False
Parameters
----------
html_string : str
Returns
-------
bool
"""
try:
from bs4 import BeautifulSoup
except ImportError:
print("ERROR: You must have BeautifulSoup to use html2data")
return
soup = BeautifulSoup(html_string, 'html.parser')
table = soup.find('table')
if not table:
return False
th = table.findAll('th')
if len(th) > 0:
return True
else:
return False
|
[
"def",
"headers_present",
"(",
"html_string",
")",
":",
"try",
":",
"from",
"bs4",
"import",
"BeautifulSoup",
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":",
"print",
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"\"ERROR: You must have BeautifulSoup to use html2data\"",
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"BeautifulSoup",
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",",
"'html.parser'",
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"len",
"(",
"th",
")",
">",
"0",
":",
"return",
"True",
"else",
":",
"return",
"False"
] |
Checks if the html table contains headers and returns True/False
Parameters
----------
html_string : str
Returns
-------
bool
|
[
"Checks",
"if",
"the",
"html",
"table",
"contains",
"headers",
"and",
"returns",
"True",
"/",
"False"
] |
python
|
train
|
aliyun/aliyun-odps-python-sdk
|
odps/tunnel/pb/encoder.py
|
https://github.com/aliyun/aliyun-odps-python-sdk/blob/4b0de18f5864386df6068f26f026e62f932c41e4/odps/tunnel/pb/encoder.py#L42-L44
|
def append_tag(self, field_number, wire_type):
"""Appends a tag containing field number and wire type information."""
self._stream.append_var_uint32(wire_format.pack_tag(field_number, wire_type))
|
[
"def",
"append_tag",
"(",
"self",
",",
"field_number",
",",
"wire_type",
")",
":",
"self",
".",
"_stream",
".",
"append_var_uint32",
"(",
"wire_format",
".",
"pack_tag",
"(",
"field_number",
",",
"wire_type",
")",
")"
] |
Appends a tag containing field number and wire type information.
|
[
"Appends",
"a",
"tag",
"containing",
"field",
"number",
"and",
"wire",
"type",
"information",
"."
] |
python
|
train
|
pymupdf/PyMuPDF
|
fitz/fitz.py
|
https://github.com/pymupdf/PyMuPDF/blob/917f2d83482510e26ba0ff01fd2392c26f3a8e90/fitz/fitz.py#L2647-L2658
|
def addUnderlineAnnot(self, rect):
"""Underline content in a rectangle or quadrilateral."""
CheckParent(self)
val = _fitz.Page_addUnderlineAnnot(self, rect)
if not val: return
val.thisown = True
val.parent = weakref.proxy(self)
self._annot_refs[id(val)] = val
return val
|
[
"def",
"addUnderlineAnnot",
"(",
"self",
",",
"rect",
")",
":",
"CheckParent",
"(",
"self",
")",
"val",
"=",
"_fitz",
".",
"Page_addUnderlineAnnot",
"(",
"self",
",",
"rect",
")",
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"return",
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"self",
".",
"_annot_refs",
"[",
"id",
"(",
"val",
")",
"]",
"=",
"val",
"return",
"val"
] |
Underline content in a rectangle or quadrilateral.
|
[
"Underline",
"content",
"in",
"a",
"rectangle",
"or",
"quadrilateral",
"."
] |
python
|
train
|
saltstack/salt
|
salt/cli/salt.py
|
https://github.com/saltstack/salt/blob/e8541fd6e744ab0df786c0f76102e41631f45d46/salt/cli/salt.py#L364-L380
|
def _output_ret(self, ret, out, retcode=0):
'''
Print the output from a single return to the terminal
'''
import salt.output
# Handle special case commands
if self.config['fun'] == 'sys.doc' and not isinstance(ret, Exception):
self._print_docs(ret)
else:
# Determine the proper output method and run it
salt.output.display_output(ret,
out=out,
opts=self.config,
_retcode=retcode)
if not ret:
sys.stderr.write('ERROR: No return received\n')
sys.exit(2)
|
[
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",",
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"out",
",",
"retcode",
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"0",
")",
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"salt",
".",
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"Exception",
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"_print_docs",
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"salt",
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"display_output",
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"out",
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"stderr",
".",
"write",
"(",
"'ERROR: No return received\\n'",
")",
"sys",
".",
"exit",
"(",
"2",
")"
] |
Print the output from a single return to the terminal
|
[
"Print",
"the",
"output",
"from",
"a",
"single",
"return",
"to",
"the",
"terminal"
] |
python
|
train
|
bcbio/bcbio-nextgen
|
bcbio/variation/prioritize.py
|
https://github.com/bcbio/bcbio-nextgen/blob/6a9348c0054ccd5baffd22f1bb7d0422f6978b20/bcbio/variation/prioritize.py#L189-L204
|
def _do_prioritize(items):
"""Determine if we should perform prioritization.
Currently done on tumor-only input samples and feeding into PureCN
which needs the germline annotations.
"""
if not any("tumoronly-prioritization" in dd.get_tools_off(d) for d in items):
if vcfutils.get_paired_phenotype(items[0]):
has_tumor = False
has_normal = False
for sub_data in items:
if vcfutils.get_paired_phenotype(sub_data) == "tumor":
has_tumor = True
elif vcfutils.get_paired_phenotype(sub_data) == "normal":
has_normal = True
return has_tumor and not has_normal
|
[
"def",
"_do_prioritize",
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"items",
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":",
"if",
"not",
"any",
"(",
"\"tumoronly-prioritization\"",
"in",
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".",
"get_tools_off",
"(",
"d",
")",
"for",
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"items",
")",
":",
"if",
"vcfutils",
".",
"get_paired_phenotype",
"(",
"items",
"[",
"0",
"]",
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":",
"has_tumor",
"=",
"False",
"has_normal",
"=",
"False",
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"in",
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":",
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"vcfutils",
".",
"get_paired_phenotype",
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"sub_data",
")",
"==",
"\"tumor\"",
":",
"has_tumor",
"=",
"True",
"elif",
"vcfutils",
".",
"get_paired_phenotype",
"(",
"sub_data",
")",
"==",
"\"normal\"",
":",
"has_normal",
"=",
"True",
"return",
"has_tumor",
"and",
"not",
"has_normal"
] |
Determine if we should perform prioritization.
Currently done on tumor-only input samples and feeding into PureCN
which needs the germline annotations.
|
[
"Determine",
"if",
"we",
"should",
"perform",
"prioritization",
"."
] |
python
|
train
|
kubernetes-client/python
|
kubernetes/client/apis/core_v1_api.py
|
https://github.com/kubernetes-client/python/blob/5e512ff564c244c50cab780d821542ed56aa965a/kubernetes/client/apis/core_v1_api.py#L11464-L11490
|
def list_limit_range_for_all_namespaces(self, **kwargs):
"""
list or watch objects of kind LimitRange
This method makes a synchronous HTTP request by default. To make an
asynchronous HTTP request, please pass async_req=True
>>> thread = api.list_limit_range_for_all_namespaces(async_req=True)
>>> result = thread.get()
:param async_req bool
:param str _continue: The continue option should be set when retrieving more results from the server. Since this value is server defined, clients may only use the continue value from a previous query result with identical query parameters (except for the value of continue) and the server may reject a continue value it does not recognize. If the specified continue value is no longer valid whether due to expiration (generally five to fifteen minutes) or a configuration change on the server, the server will respond with a 410 ResourceExpired error together with a continue token. If the client needs a consistent list, it must restart their list without the continue field. Otherwise, the client may send another list request with the token received with the 410 error, the server will respond with a list starting from the next key, but from the latest snapshot, which is inconsistent from the previous list results - objects that are created, modified, or deleted after the first list request will be included in the response, as long as their keys are after the \"next key\". This field is not supported when watch is true. Clients may start a watch from the last resourceVersion value returned by the server and not miss any modifications.
:param str field_selector: A selector to restrict the list of returned objects by their fields. Defaults to everything.
:param str label_selector: A selector to restrict the list of returned objects by their labels. Defaults to everything.
:param int limit: limit is a maximum number of responses to return for a list call. If more items exist, the server will set the `continue` field on the list metadata to a value that can be used with the same initial query to retrieve the next set of results. Setting a limit may return fewer than the requested amount of items (up to zero items) in the event all requested objects are filtered out and clients should only use the presence of the continue field to determine whether more results are available. Servers may choose not to support the limit argument and will return all of the available results. If limit is specified and the continue field is empty, clients may assume that no more results are available. This field is not supported if watch is true. The server guarantees that the objects returned when using continue will be identical to issuing a single list call without a limit - that is, no objects created, modified, or deleted after the first request is issued will be included in any subsequent continued requests. This is sometimes referred to as a consistent snapshot, and ensures that a client that is using limit to receive smaller chunks of a very large result can ensure they see all possible objects. If objects are updated during a chunked list the version of the object that was present at the time the first list result was calculated is returned.
:param str pretty: If 'true', then the output is pretty printed.
:param str resource_version: When specified with a watch call, shows changes that occur after that particular version of a resource. Defaults to changes from the beginning of history. When specified for list: - if unset, then the result is returned from remote storage based on quorum-read flag; - if it's 0, then we simply return what we currently have in cache, no guarantee; - if set to non zero, then the result is at least as fresh as given rv.
:param int timeout_seconds: Timeout for the list/watch call. This limits the duration of the call, regardless of any activity or inactivity.
:param bool watch: Watch for changes to the described resources and return them as a stream of add, update, and remove notifications. Specify resourceVersion.
:return: V1LimitRangeList
If the method is called asynchronously,
returns the request thread.
"""
kwargs['_return_http_data_only'] = True
if kwargs.get('async_req'):
return self.list_limit_range_for_all_namespaces_with_http_info(**kwargs)
else:
(data) = self.list_limit_range_for_all_namespaces_with_http_info(**kwargs)
return data
|
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list or watch objects of kind LimitRange
This method makes a synchronous HTTP request by default. To make an
asynchronous HTTP request, please pass async_req=True
>>> thread = api.list_limit_range_for_all_namespaces(async_req=True)
>>> result = thread.get()
:param async_req bool
:param str _continue: The continue option should be set when retrieving more results from the server. Since this value is server defined, clients may only use the continue value from a previous query result with identical query parameters (except for the value of continue) and the server may reject a continue value it does not recognize. If the specified continue value is no longer valid whether due to expiration (generally five to fifteen minutes) or a configuration change on the server, the server will respond with a 410 ResourceExpired error together with a continue token. If the client needs a consistent list, it must restart their list without the continue field. Otherwise, the client may send another list request with the token received with the 410 error, the server will respond with a list starting from the next key, but from the latest snapshot, which is inconsistent from the previous list results - objects that are created, modified, or deleted after the first list request will be included in the response, as long as their keys are after the \"next key\". This field is not supported when watch is true. Clients may start a watch from the last resourceVersion value returned by the server and not miss any modifications.
:param str field_selector: A selector to restrict the list of returned objects by their fields. Defaults to everything.
:param str label_selector: A selector to restrict the list of returned objects by their labels. Defaults to everything.
:param int limit: limit is a maximum number of responses to return for a list call. If more items exist, the server will set the `continue` field on the list metadata to a value that can be used with the same initial query to retrieve the next set of results. Setting a limit may return fewer than the requested amount of items (up to zero items) in the event all requested objects are filtered out and clients should only use the presence of the continue field to determine whether more results are available. Servers may choose not to support the limit argument and will return all of the available results. If limit is specified and the continue field is empty, clients may assume that no more results are available. This field is not supported if watch is true. The server guarantees that the objects returned when using continue will be identical to issuing a single list call without a limit - that is, no objects created, modified, or deleted after the first request is issued will be included in any subsequent continued requests. This is sometimes referred to as a consistent snapshot, and ensures that a client that is using limit to receive smaller chunks of a very large result can ensure they see all possible objects. If objects are updated during a chunked list the version of the object that was present at the time the first list result was calculated is returned.
:param str pretty: If 'true', then the output is pretty printed.
:param str resource_version: When specified with a watch call, shows changes that occur after that particular version of a resource. Defaults to changes from the beginning of history. When specified for list: - if unset, then the result is returned from remote storage based on quorum-read flag; - if it's 0, then we simply return what we currently have in cache, no guarantee; - if set to non zero, then the result is at least as fresh as given rv.
:param int timeout_seconds: Timeout for the list/watch call. This limits the duration of the call, regardless of any activity or inactivity.
:param bool watch: Watch for changes to the described resources and return them as a stream of add, update, and remove notifications. Specify resourceVersion.
:return: V1LimitRangeList
If the method is called asynchronously,
returns the request thread.
|
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python
|
train
|
googleapis/google-cloud-python
|
bigquery/google/cloud/bigquery/client.py
|
https://github.com/googleapis/google-cloud-python/blob/85e80125a59cb10f8cb105f25ecc099e4b940b50/bigquery/google/cloud/bigquery/client.py#L523-L556
|
def update_model(self, model, fields, retry=DEFAULT_RETRY):
"""[Beta] Change some fields of a model.
Use ``fields`` to specify which fields to update. At least one field
must be provided. If a field is listed in ``fields`` and is ``None``
in ``model``, it will be deleted.
If ``model.etag`` is not ``None``, the update will only succeed if
the model on the server has the same ETag. Thus reading a model with
``get_model``, changing its fields, and then passing it to
``update_model`` will ensure that the changes will only be saved if
no modifications to the model occurred since the read.
Args:
model (google.cloud.bigquery.model.Model): The model to update.
fields (Sequence[str]):
The fields of ``model`` to change, spelled as the Model
properties (e.g. "friendly_name").
retry (google.api_core.retry.Retry):
(Optional) A description of how to retry the API call.
Returns:
google.cloud.bigquery.model.Model:
The model resource returned from the API call.
"""
partial = model._build_resource(fields)
if model.etag:
headers = {"If-Match": model.etag}
else:
headers = None
api_response = self._call_api(
retry, method="PATCH", path=model.path, data=partial, headers=headers
)
return Model.from_api_repr(api_response)
|
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[Beta] Change some fields of a model.
Use ``fields`` to specify which fields to update. At least one field
must be provided. If a field is listed in ``fields`` and is ``None``
in ``model``, it will be deleted.
If ``model.etag`` is not ``None``, the update will only succeed if
the model on the server has the same ETag. Thus reading a model with
``get_model``, changing its fields, and then passing it to
``update_model`` will ensure that the changes will only be saved if
no modifications to the model occurred since the read.
Args:
model (google.cloud.bigquery.model.Model): The model to update.
fields (Sequence[str]):
The fields of ``model`` to change, spelled as the Model
properties (e.g. "friendly_name").
retry (google.api_core.retry.Retry):
(Optional) A description of how to retry the API call.
Returns:
google.cloud.bigquery.model.Model:
The model resource returned from the API call.
|
[
"[",
"Beta",
"]",
"Change",
"some",
"fields",
"of",
"a",
"model",
"."
] |
python
|
train
|
roamanalytics/mittens
|
mittens/np_mittens.py
|
https://github.com/roamanalytics/mittens/blob/dbf0c3f8d18651475cf7e21ab1ceb824c5f89150/mittens/np_mittens.py#L136-L154
|
def _apply_updates(self, gradients):
"""Apply AdaGrad update to parameters.
Parameters
----------
gradients
Returns
-------
"""
if not hasattr(self, 'optimizers'):
self.optimizers = \
{obj: AdaGradOptimizer(self.learning_rate)
for obj in ['W', 'C', 'bw', 'bc']}
self.W -= self.optimizers['W'].get_step(gradients['W'])
self.C -= self.optimizers['C'].get_step(gradients['C'])
self.bw -= self.optimizers['bw'].get_step(gradients['bw'])
self.bc -= self.optimizers['bc'].get_step(gradients['bc'])
|
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"[",
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Apply AdaGrad update to parameters.
Parameters
----------
gradients
Returns
-------
|
[
"Apply",
"AdaGrad",
"update",
"to",
"parameters",
"."
] |
python
|
train
|
apache/incubator-mxnet
|
python/mxnet/ndarray/sparse.py
|
https://github.com/apache/incubator-mxnet/blob/1af29e9c060a4c7d60eeaacba32afdb9a7775ba7/python/mxnet/ndarray/sparse.py#L754-L784
|
def copyto(self, other):
"""Copies the value of this array to another array.
If ``other`` is a ``NDArray`` or ``RowSparseNDArray`` object, then ``other.shape``
and ``self.shape`` should be the same. This function copies the value from
``self`` to ``other``.
If ``other`` is a context, a new ``RowSparseNDArray`` will be first created on
the target context, and the value of ``self`` is copied.
Parameters
----------
other : NDArray or RowSparseNDArray or Context
The destination array or context.
Returns
-------
NDArray or RowSparseNDArray
The copied array. If ``other`` is an ``NDArray`` or ``RowSparseNDArray``, then the
return value and ``other`` will point to the same ``NDArray`` or ``RowSparseNDArray``.
"""
if isinstance(other, Context):
return super(RowSparseNDArray, self).copyto(other)
elif isinstance(other, NDArray):
stype = other.stype
if stype in ('default', 'row_sparse'):
return super(RowSparseNDArray, self).copyto(other)
else:
raise TypeError('copyto does not support destination NDArray stype ' + str(stype))
else:
raise TypeError('copyto does not support type ' + str(type(other)))
|
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Copies the value of this array to another array.
If ``other`` is a ``NDArray`` or ``RowSparseNDArray`` object, then ``other.shape``
and ``self.shape`` should be the same. This function copies the value from
``self`` to ``other``.
If ``other`` is a context, a new ``RowSparseNDArray`` will be first created on
the target context, and the value of ``self`` is copied.
Parameters
----------
other : NDArray or RowSparseNDArray or Context
The destination array or context.
Returns
-------
NDArray or RowSparseNDArray
The copied array. If ``other`` is an ``NDArray`` or ``RowSparseNDArray``, then the
return value and ``other`` will point to the same ``NDArray`` or ``RowSparseNDArray``.
|
[
"Copies",
"the",
"value",
"of",
"this",
"array",
"to",
"another",
"array",
"."
] |
python
|
train
|
glomex/gcdt
|
gcdt/kumo_start_stop.py
|
https://github.com/glomex/gcdt/blob/cd67cf416371337b83cb9ca3f696277125703339/gcdt/kumo_start_stop.py#L169-L284
|
def stop_stack(awsclient, stack_name, use_suspend=False):
"""Stop an existing stack on AWS cloud.
:param awsclient:
:param stack_name:
:param use_suspend: use suspend and resume on the autoscaling group
:return: exit_code
"""
exit_code = 0
# check for DisableStop
#disable_stop = conf.get('deployment', {}).get('DisableStop', False)
#if disable_stop:
# log.warn('\'DisableStop\' is set - nothing to do!')
#else:
if not stack_exists(awsclient, stack_name):
log.warn('Stack \'%s\' not deployed - nothing to do!', stack_name)
else:
client_cfn = awsclient.get_client('cloudformation')
client_autoscaling = awsclient.get_client('autoscaling')
client_rds = awsclient.get_client('rds')
client_ec2 = awsclient.get_client('ec2')
resources = all_pages(
client_cfn.list_stack_resources,
{ 'StackName': stack_name },
lambda r: r['StackResourceSummaries']
)
autoscaling_groups = [
r for r in resources
if r['ResourceType'] == 'AWS::AutoScaling::AutoScalingGroup'
]
# lookup all types of scaling processes
# [Launch, Terminate, HealthCheck, ReplaceUnhealthy, AZRebalance
# AlarmNotification, ScheduledActions, AddToLoadBalancer]
response = client_autoscaling.describe_scaling_process_types()
scaling_process_types = [t['ProcessName'] for t in response.get('Processes', [])]
for asg in autoscaling_groups:
# find instances in autoscaling group
ec2_instances = all_pages(
client_autoscaling.describe_auto_scaling_instances,
{},
lambda r: [i['InstanceId'] for i in r.get('AutoScalingInstances', [])
if i['AutoScalingGroupName'] == asg['PhysicalResourceId']],
)
if use_suspend:
# alternative implementation to speed up start
# only problem is that instances must survive stop & start
# suspend all autoscaling processes
log.info('Suspending all autoscaling processes for \'%s\'',
asg['LogicalResourceId'])
response = client_autoscaling.suspend_processes(
AutoScalingGroupName=asg['PhysicalResourceId'],
ScalingProcesses=scaling_process_types
)
_stop_ec2_instances(awsclient, ec2_instances)
else:
# resize autoscaling group (min, max = 0)
log.info('Resize autoscaling group \'%s\' to minSize=0, maxSize=0',
asg['LogicalResourceId'])
response = client_autoscaling.update_auto_scaling_group(
AutoScalingGroupName=asg['PhysicalResourceId'],
MinSize=0,
MaxSize=0
)
if ec2_instances:
running_instances = all_pages(
client_ec2.describe_instance_status,
{
'InstanceIds': ec2_instances,
'Filters': [{
'Name': 'instance-state-name',
'Values': ['pending', 'running']
}]
},
lambda r: [i['InstanceId'] for i in r.get('InstanceStatuses', [])],
)
if running_instances:
# wait for instances to terminate
waiter_inst_terminated = client_ec2.get_waiter('instance_terminated')
waiter_inst_terminated.wait(InstanceIds=running_instances)
# setting ECS desiredCount to zero
services = [
r for r in resources
if r['ResourceType'] == 'AWS::ECS::Service'
]
if services:
template, parameters = _get_template_parameters(awsclient, stack_name)
_stop_ecs_services(awsclient, services, template, parameters)
# stopping ec2 instances
instances = [
r['PhysicalResourceId'] for r in resources
if r['ResourceType'] == 'AWS::EC2::Instance'
]
_stop_ec2_instances(awsclient, instances)
# stopping db instances
db_instances = [
r['PhysicalResourceId'] for r in resources
if r['ResourceType'] == 'AWS::RDS::DBInstance'
]
running_db_instances = _filter_db_instances_by_status(
awsclient, db_instances, ['available']
)
for db in running_db_instances:
log.info('Stopping RDS instance \'%s\'', db)
client_rds.stop_db_instance(DBInstanceIdentifier=db)
return exit_code
|
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",",
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"waiter_inst_terminated",
"=",
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".",
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"(",
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"# setting ECS desiredCount to zero",
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")",
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",",
"instances",
")",
"# stopping db instances",
"db_instances",
"=",
"[",
"r",
"[",
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"]",
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"resources",
"if",
"r",
"[",
"'ResourceType'",
"]",
"==",
"'AWS::RDS::DBInstance'",
"]",
"running_db_instances",
"=",
"_filter_db_instances_by_status",
"(",
"awsclient",
",",
"db_instances",
",",
"[",
"'available'",
"]",
")",
"for",
"db",
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":",
"log",
".",
"info",
"(",
"'Stopping RDS instance \\'%s\\''",
",",
"db",
")",
"client_rds",
".",
"stop_db_instance",
"(",
"DBInstanceIdentifier",
"=",
"db",
")",
"return",
"exit_code"
] |
Stop an existing stack on AWS cloud.
:param awsclient:
:param stack_name:
:param use_suspend: use suspend and resume on the autoscaling group
:return: exit_code
|
[
"Stop",
"an",
"existing",
"stack",
"on",
"AWS",
"cloud",
"."
] |
python
|
train
|
eaton-lab/toytree
|
toytree/Coords.py
|
https://github.com/eaton-lab/toytree/blob/0347ed2098acc5f707fadf52a0ecd411a6d1859c/toytree/Coords.py#L252-L287
|
def reorient_coordinates(self):
"""
Returns a modified .verts array with new coordinates for nodes.
This does not need to modify .edges. The order of nodes, and therefore
of verts rows is still the same because it is still based on the tree
branching order (ladderized usually).
"""
# if tree is empty then bail out
if len(self.ttree) < 2:
return
# down is the default orientation
# down-facing tips align at y=0, first ladderized tip at x=0
if self.ttree.style.orient in ('down', 0):
pass
# right-facing tips align at x=0, last ladderized tip at y=0
elif self.ttree.style.orient in ('right', 3):
# verts swap x and ys and make xs 0 to negative
tmp = np.zeros(self.verts.shape)
tmp[:, 1] = self.verts[:, 0]
tmp[:, 0] = self.verts[:, 1] * -1
self.verts = tmp
# coords...
tmp = np.zeros(self.coords.shape)
tmp[:, 1] = self.coords[:, 0]
tmp[:, 0] = self.coords[:, 1] * -1
self.coords = tmp
elif self.ttree.style.orient in ('left', 1):
raise NotImplementedError("todo: left facing")
else:
raise NotImplementedError("todo: up facing")
|
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")",
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":",
"raise",
"NotImplementedError",
"(",
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")"
] |
Returns a modified .verts array with new coordinates for nodes.
This does not need to modify .edges. The order of nodes, and therefore
of verts rows is still the same because it is still based on the tree
branching order (ladderized usually).
|
[
"Returns",
"a",
"modified",
".",
"verts",
"array",
"with",
"new",
"coordinates",
"for",
"nodes",
".",
"This",
"does",
"not",
"need",
"to",
"modify",
".",
"edges",
".",
"The",
"order",
"of",
"nodes",
"and",
"therefore",
"of",
"verts",
"rows",
"is",
"still",
"the",
"same",
"because",
"it",
"is",
"still",
"based",
"on",
"the",
"tree",
"branching",
"order",
"(",
"ladderized",
"usually",
")",
"."
] |
python
|
train
|
lpantano/seqcluster
|
seqcluster/detect/description.py
|
https://github.com/lpantano/seqcluster/blob/774e23add8cd4fdc83d626cea3bd1f458e7d060d/seqcluster/detect/description.py#L25-L40
|
def best_precursor(clus, loci):
"""
Select best precursor asuming size around 100 nt
"""
data_loci = sort_precursor(clus, loci)
current_size = data_loci[0][5]
best = 0
for item, locus in enumerate(data_loci):
if locus[3] - locus[2] > 70:
if locus[5] > current_size * 0.8:
best = item
break
best_loci = data_loci[best]
del data_loci[best]
data_loci.insert(0, best_loci)
return data_loci
|
[
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":",
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"=",
"sort_precursor",
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"loci",
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"current_size",
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"data_loci",
".",
"insert",
"(",
"0",
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"best_loci",
")",
"return",
"data_loci"
] |
Select best precursor asuming size around 100 nt
|
[
"Select",
"best",
"precursor",
"asuming",
"size",
"around",
"100",
"nt"
] |
python
|
train
|
celery/django-celery
|
djcelery/managers.py
|
https://github.com/celery/django-celery/blob/5d1ecb09c6304d22cc447c7c08fba0bd1febc2ef/djcelery/managers.py#L115-L124
|
def delete_expired(self, expires):
"""Delete all expired taskset results."""
meta = self.model._meta
with commit_on_success():
self.get_all_expired(expires).update(hidden=True)
cursor = self.connection_for_write().cursor()
cursor.execute(
'DELETE FROM {0.db_table} WHERE hidden=%s'.format(meta),
(True, ),
)
|
[
"def",
"delete_expired",
"(",
"self",
",",
"expires",
")",
":",
"meta",
"=",
"self",
".",
"model",
".",
"_meta",
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")",
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"self",
".",
"get_all_expired",
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"expires",
")",
".",
"update",
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"hidden",
"=",
"True",
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"(",
")",
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".",
"format",
"(",
"meta",
")",
",",
"(",
"True",
",",
")",
",",
")"
] |
Delete all expired taskset results.
|
[
"Delete",
"all",
"expired",
"taskset",
"results",
"."
] |
python
|
train
|
GNS3/gns3-server
|
gns3server/compute/base_manager.py
|
https://github.com/GNS3/gns3-server/blob/a221678448fb5d24e977ef562f81d56aacc89ab1/gns3server/compute/base_manager.py#L495-L517
|
def get_relative_image_path(self, path):
"""
Get a path relative to images directory path
or an abspath if the path is not located inside
image directory
:param path: file path
:return: file path
"""
if not path:
return ""
path = force_unix_path(self.get_abs_image_path(path))
img_directory = self.get_images_directory()
for directory in images_directories(self._NODE_TYPE):
if os.path.commonprefix([directory, path]) == directory:
relpath = os.path.relpath(path, directory)
# We don't allow to recurse search from the top image directory just for image type directory (compatibility with old releases)
if os.sep not in relpath or directory == img_directory:
return relpath
return path
|
[
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",",
"path",
")",
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"not",
"path",
":",
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"(",
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"(",
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",",
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"# We don't allow to recurse search from the top image directory just for image type directory (compatibility with old releases)",
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"sep",
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"in",
"relpath",
"or",
"directory",
"==",
"img_directory",
":",
"return",
"relpath",
"return",
"path"
] |
Get a path relative to images directory path
or an abspath if the path is not located inside
image directory
:param path: file path
:return: file path
|
[
"Get",
"a",
"path",
"relative",
"to",
"images",
"directory",
"path",
"or",
"an",
"abspath",
"if",
"the",
"path",
"is",
"not",
"located",
"inside",
"image",
"directory"
] |
python
|
train
|
log2timeline/dftimewolf
|
dftimewolf/lib/processors/turbinia.py
|
https://github.com/log2timeline/dftimewolf/blob/45f898476a288d73c4256ae8e3836a2a4848c0d7/dftimewolf/lib/processors/turbinia.py#L94-L111
|
def _print_task_data(self, task):
"""Pretty-prints task data.
Args:
task: Task dict generated by Turbinia.
"""
print(' {0:s} ({1:s})'.format(task['name'], task['id']))
paths = task.get('saved_paths', [])
if not paths:
return
for path in paths:
if path.endswith('worker-log.txt'):
continue
if path.endswith('{0:s}.log'.format(task.get('id'))):
continue
if path.startswith('/'):
continue
print(' ' + path)
|
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"def",
"_print_task_data",
"(",
"self",
",",
"task",
")",
":",
"print",
"(",
"' {0:s} ({1:s})'",
".",
"format",
"(",
"task",
"[",
"'name'",
"]",
",",
"task",
"[",
"'id'",
"]",
")",
")",
"paths",
"=",
"task",
".",
"get",
"(",
"'saved_paths'",
",",
"[",
"]",
")",
"if",
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"paths",
":",
"return",
"for",
"path",
"in",
"paths",
":",
"if",
"path",
".",
"endswith",
"(",
"'worker-log.txt'",
")",
":",
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"path",
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"(",
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"(",
"task",
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"get",
"(",
"'id'",
")",
")",
")",
":",
"continue",
"if",
"path",
".",
"startswith",
"(",
"'/'",
")",
":",
"continue",
"print",
"(",
"' '",
"+",
"path",
")"
] |
Pretty-prints task data.
Args:
task: Task dict generated by Turbinia.
|
[
"Pretty",
"-",
"prints",
"task",
"data",
"."
] |
python
|
train
|
JdeRobot/base
|
src/drivers/MAVLinkServer/MAVProxy/modules/mavproxy_battery.py
|
https://github.com/JdeRobot/base/blob/303b18992785b2fe802212f2d758a60873007f1f/src/drivers/MAVLinkServer/MAVProxy/modules/mavproxy_battery.py#L121-L131
|
def mavlink_packet(self, m):
'''handle a mavlink packet'''
mtype = m.get_type()
if mtype == "SYS_STATUS":
self.battery_update(m)
if mtype == "BATTERY2":
self.battery2_voltage = m.voltage * 0.001
if mtype == "POWER_STATUS":
self.power_status_update(m)
if self.battery_period.trigger():
self.battery_report()
|
[
"def",
"mavlink_packet",
"(",
"self",
",",
"m",
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":",
"mtype",
"=",
"m",
".",
"get_type",
"(",
")",
"if",
"mtype",
"==",
"\"SYS_STATUS\"",
":",
"self",
".",
"battery_update",
"(",
"m",
")",
"if",
"mtype",
"==",
"\"BATTERY2\"",
":",
"self",
".",
"battery2_voltage",
"=",
"m",
".",
"voltage",
"*",
"0.001",
"if",
"mtype",
"==",
"\"POWER_STATUS\"",
":",
"self",
".",
"power_status_update",
"(",
"m",
")",
"if",
"self",
".",
"battery_period",
".",
"trigger",
"(",
")",
":",
"self",
".",
"battery_report",
"(",
")"
] |
handle a mavlink packet
|
[
"handle",
"a",
"mavlink",
"packet"
] |
python
|
train
|
vstinner/perf
|
perf/_cpu_utils.py
|
https://github.com/vstinner/perf/blob/cf096c0c0c955d0aa1c893847fa6393ba4922ada/perf/_cpu_utils.py#L127-L147
|
def get_isolated_cpus():
"""Get the list of isolated CPUs.
Return a sorted list of CPU identifiers, or return None if no CPU is
isolated.
"""
# The cpu/isolated sysfs was added in Linux 4.2
# (commit 59f30abe94bff50636c8cad45207a01fdcb2ee49)
path = sysfs_path('devices/system/cpu/isolated')
isolated = read_first_line(path)
if isolated:
return parse_cpu_list(isolated)
cmdline = read_first_line(proc_path('cmdline'))
if cmdline:
match = re.search(r'\bisolcpus=([^ ]+)', cmdline)
if match:
isolated = match.group(1)
return parse_cpu_list(isolated)
return None
|
[
"def",
"get_isolated_cpus",
"(",
")",
":",
"# The cpu/isolated sysfs was added in Linux 4.2",
"# (commit 59f30abe94bff50636c8cad45207a01fdcb2ee49)",
"path",
"=",
"sysfs_path",
"(",
"'devices/system/cpu/isolated'",
")",
"isolated",
"=",
"read_first_line",
"(",
"path",
")",
"if",
"isolated",
":",
"return",
"parse_cpu_list",
"(",
"isolated",
")",
"cmdline",
"=",
"read_first_line",
"(",
"proc_path",
"(",
"'cmdline'",
")",
")",
"if",
"cmdline",
":",
"match",
"=",
"re",
".",
"search",
"(",
"r'\\bisolcpus=([^ ]+)'",
",",
"cmdline",
")",
"if",
"match",
":",
"isolated",
"=",
"match",
".",
"group",
"(",
"1",
")",
"return",
"parse_cpu_list",
"(",
"isolated",
")",
"return",
"None"
] |
Get the list of isolated CPUs.
Return a sorted list of CPU identifiers, or return None if no CPU is
isolated.
|
[
"Get",
"the",
"list",
"of",
"isolated",
"CPUs",
"."
] |
python
|
train
|
django-danceschool/django-danceschool
|
danceschool/payments/square/tasks.py
|
https://github.com/django-danceschool/django-danceschool/blob/bb08cbf39017a812a5a94bdb4ea34170bf1a30ba/danceschool/payments/square/tasks.py#L5-L17
|
def updateSquareFees(paymentRecord):
'''
The Square Checkout API does not calculate fees immediately, so this task is
called to be asynchronously run 1 minute after the initial transaction, so that
any Invoice or ExpenseItem associated with this transaction also remains accurate.
'''
fees = paymentRecord.netFees
invoice = paymentRecord.invoice
invoice.fees = fees
invoice.save()
invoice.allocateFees()
return fees
|
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The Square Checkout API does not calculate fees immediately, so this task is
called to be asynchronously run 1 minute after the initial transaction, so that
any Invoice or ExpenseItem associated with this transaction also remains accurate.
|
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] |
python
|
train
|
cggh/scikit-allel
|
allel/stats/hw.py
|
https://github.com/cggh/scikit-allel/blob/3c979a57a100240ba959dd13f98839349530f215/allel/stats/hw.py#L106-L157
|
def inbreeding_coefficient(g, fill=np.nan):
"""Calculate the inbreeding coefficient for each variant.
Parameters
----------
g : array_like, int, shape (n_variants, n_samples, ploidy)
Genotype array.
fill : float, optional
Use this value for variants where the expected heterozygosity is
zero.
Returns
-------
f : ndarray, float, shape (n_variants,)
Inbreeding coefficient.
Notes
-----
The inbreeding coefficient is calculated as *1 - (Ho/He)* where *Ho* is
the observed heterozygosity and *He* is the expected heterozygosity.
Examples
--------
>>> import allel
>>> g = allel.GenotypeArray([[[0, 0], [0, 0], [0, 0]],
... [[0, 0], [0, 1], [1, 1]],
... [[0, 0], [1, 1], [2, 2]],
... [[1, 1], [1, 2], [-1, -1]]])
>>> allel.inbreeding_coefficient(g)
array([ nan, 0.33333333, 1. , -0.33333333])
"""
# check inputs
if not hasattr(g, 'count_het') or not hasattr(g, 'count_called'):
g = GenotypeArray(g, copy=False)
# calculate observed and expected heterozygosity
ho = heterozygosity_observed(g)
af = g.count_alleles().to_frequencies()
he = heterozygosity_expected(af, ploidy=g.shape[-1], fill=0)
# calculate inbreeding coefficient, accounting for variants with no
# expected heterozygosity
with ignore_invalid():
f = np.where(he > 0, 1 - (ho / he), fill)
return f
|
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Calculate the inbreeding coefficient for each variant.
Parameters
----------
g : array_like, int, shape (n_variants, n_samples, ploidy)
Genotype array.
fill : float, optional
Use this value for variants where the expected heterozygosity is
zero.
Returns
-------
f : ndarray, float, shape (n_variants,)
Inbreeding coefficient.
Notes
-----
The inbreeding coefficient is calculated as *1 - (Ho/He)* where *Ho* is
the observed heterozygosity and *He* is the expected heterozygosity.
Examples
--------
>>> import allel
>>> g = allel.GenotypeArray([[[0, 0], [0, 0], [0, 0]],
... [[0, 0], [0, 1], [1, 1]],
... [[0, 0], [1, 1], [2, 2]],
... [[1, 1], [1, 2], [-1, -1]]])
>>> allel.inbreeding_coefficient(g)
array([ nan, 0.33333333, 1. , -0.33333333])
|
[
"Calculate",
"the",
"inbreeding",
"coefficient",
"for",
"each",
"variant",
"."
] |
python
|
train
|
estnltk/estnltk
|
estnltk/text.py
|
https://github.com/estnltk/estnltk/blob/28ae334a68a0673072febc318635f04da0dcc54a/estnltk/text.py#L722-L727
|
def tag_syntax_vislcg3(self):
""" Changes default syntactic parser to VISLCG3Parser, performs syntactic analysis,
and stores the results in the layer named LAYER_VISLCG3."""
if not self.__syntactic_parser or not isinstance(self.__syntactic_parser, VISLCG3Parser):
self.__syntactic_parser = VISLCG3Parser()
return self.tag_syntax()
|
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Changes default syntactic parser to VISLCG3Parser, performs syntactic analysis,
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|
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] |
python
|
train
|
hotdoc/hotdoc
|
hotdoc/extensions/c/clang/cindex.py
|
https://github.com/hotdoc/hotdoc/blob/1067cdc8482b585b364a38fb52ca5d904e486280/hotdoc/extensions/c/clang/cindex.py#L1591-L1613
|
def enum_value(self):
"""Return the value of an enum constant."""
if not hasattr(self, '_enum_value'):
assert self.kind == CursorKind.ENUM_CONSTANT_DECL
# Figure out the underlying type of the enum to know if it
# is a signed or unsigned quantity.
underlying_type = self.type
if underlying_type.kind == TypeKind.ENUM:
underlying_type = underlying_type.get_declaration().enum_type
if underlying_type.kind in (TypeKind.CHAR_U,
TypeKind.UCHAR,
TypeKind.CHAR16,
TypeKind.CHAR32,
TypeKind.USHORT,
TypeKind.UINT,
TypeKind.ULONG,
TypeKind.ULONGLONG,
TypeKind.UINT128):
self._enum_value = \
conf.lib.clang_getEnumConstantDeclUnsignedValue(self)
else:
self._enum_value = conf.lib.clang_getEnumConstantDeclValue(self)
return self._enum_value
|
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Return the value of an enum constant.
|
[
"Return",
"the",
"value",
"of",
"an",
"enum",
"constant",
"."
] |
python
|
train
|
gccxml/pygccxml
|
pygccxml/declarations/algorithm.py
|
https://github.com/gccxml/pygccxml/blob/2b1efbb9e37ceb2ae925c7f3ce1570f476db9e1e/pygccxml/declarations/algorithm.py#L37-L60
|
def does_match_exist(self, inst):
"""
Returns True if inst does match one of specified criteria.
:param inst: declaration instance
:type inst: :class:`declaration_t`
:rtype: bool
"""
answer = True
if self._decl_type is not None:
answer &= isinstance(inst, self._decl_type)
if self.name is not None:
answer &= inst.name == self.name
if self.parent is not None:
answer &= self.parent is inst.parent
if self.fullname is not None:
if inst.name:
answer &= self.fullname == declaration_utils.full_name(inst)
else:
answer = False
return answer
|
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Returns True if inst does match one of specified criteria.
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:type inst: :class:`declaration_t`
:rtype: bool
|
[
"Returns",
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"of",
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"criteria",
"."
] |
python
|
train
|
tensorflow/probability
|
tensorflow_probability/python/vi/csiszar_divergence.py
|
https://github.com/tensorflow/probability/blob/e87fe34111d68c35db0f9eeb4935f1ece9e1a8f5/tensorflow_probability/python/vi/csiszar_divergence.py#L121-L166
|
def kl_reverse(logu, self_normalized=False, name=None):
"""The reverse Kullback-Leibler Csiszar-function in log-space.
A Csiszar-function is a member of,
```none
F = { f:R_+ to R : f convex }.
```
When `self_normalized = True`, the KL-reverse Csiszar-function is:
```none
f(u) = -log(u) + (u - 1)
```
When `self_normalized = False` the `(u - 1)` term is omitted.
Observe that as an f-Divergence, this Csiszar-function implies:
```none
D_f[p, q] = KL[q, p]
```
The KL is "reverse" because in maximum likelihood we think of minimizing `q`
as in `KL[p, q]`.
Warning: when self_normalized = True` this function makes non-log-space
calculations and may therefore be numerically unstable for `|logu| >> 0`.
Args:
logu: `float`-like `Tensor` representing `log(u)` from above.
self_normalized: Python `bool` indicating whether `f'(u=1)=0`. When
`f'(u=1)=0` the implied Csiszar f-Divergence remains non-negative even
when `p, q` are unnormalized measures.
name: Python `str` name prefixed to Ops created by this function.
Returns:
kl_reverse_of_u: `float`-like `Tensor` of the Csiszar-function evaluated at
`u = exp(logu)`.
Raises:
TypeError: if `self_normalized` is `None` or a `Tensor`.
"""
with tf.compat.v1.name_scope(name, "kl_reverse", [logu]):
return amari_alpha(logu, alpha=0., self_normalized=self_normalized)
|
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The reverse Kullback-Leibler Csiszar-function in log-space.
A Csiszar-function is a member of,
```none
F = { f:R_+ to R : f convex }.
```
When `self_normalized = True`, the KL-reverse Csiszar-function is:
```none
f(u) = -log(u) + (u - 1)
```
When `self_normalized = False` the `(u - 1)` term is omitted.
Observe that as an f-Divergence, this Csiszar-function implies:
```none
D_f[p, q] = KL[q, p]
```
The KL is "reverse" because in maximum likelihood we think of minimizing `q`
as in `KL[p, q]`.
Warning: when self_normalized = True` this function makes non-log-space
calculations and may therefore be numerically unstable for `|logu| >> 0`.
Args:
logu: `float`-like `Tensor` representing `log(u)` from above.
self_normalized: Python `bool` indicating whether `f'(u=1)=0`. When
`f'(u=1)=0` the implied Csiszar f-Divergence remains non-negative even
when `p, q` are unnormalized measures.
name: Python `str` name prefixed to Ops created by this function.
Returns:
kl_reverse_of_u: `float`-like `Tensor` of the Csiszar-function evaluated at
`u = exp(logu)`.
Raises:
TypeError: if `self_normalized` is `None` or a `Tensor`.
|
[
"The",
"reverse",
"Kullback",
"-",
"Leibler",
"Csiszar",
"-",
"function",
"in",
"log",
"-",
"space",
"."
] |
python
|
test
|
RedHatInsights/insights-core
|
insights/parsers/__init__.py
|
https://github.com/RedHatInsights/insights-core/blob/b57cbf8ed7c089672426ede0441e0a4f789ef4a1/insights/parsers/__init__.py#L451-L528
|
def keyword_search(rows, **kwargs):
"""
Takes a list of dictionaries and finds all the dictionaries where the
keys and values match those found in the keyword arguments.
Keys in the row data have ' ' and '-' replaced with '_', so they can
match the keyword argument parsing. For example, the keyword argument
'fix_up_path' will match a key named 'fix-up path'.
In addition, several suffixes can be added to the key name to do partial
matching of values:
* '__contains' will test whether the data value contains the given
value.
* '__startswith' tests if the data value starts with the given value
* '__lower_value' compares the lower-case version of the data and given
values.
Arguments:
rows (list): A list of dictionaries representing the data to be
searched.
**kwargs (dict): keyword-value pairs corresponding to the fields that
need to be found and their required values in the data rows.
Returns:
(list): The list of rows that match the search keywords. If no
keyword arguments are given, no rows are returned.
Examples:
>>> rows = [
... {'domain': 'oracle', 'type': 'soft', 'item': 'nofile', 'value': 1024},
... {'domain': 'oracle', 'type': 'hard', 'item': 'nofile', 'value': 65536},
... {'domain': 'oracle', 'type': 'soft', 'item': 'stack', 'value': 10240},
... {'domain': 'oracle', 'type': 'hard', 'item': 'stack', 'value': 3276},
... {'domain': 'root', 'type': 'soft', 'item': 'nproc', 'value': -1}]
...
>>> keyword_search(rows, domain='root')
[{'domain': 'root', 'type': 'soft', 'item': 'nproc', 'value': -1}]
>>> keyword_search(rows, item__contains='c')
[{'domain': 'oracle', 'type': 'soft', 'item': 'stack', 'value': 10240},
{'domain': 'oracle', 'type': 'hard', 'item': 'stack', 'value': 3276},
{'domain': 'root', 'type': 'soft', 'item': 'nproc', 'value': -1}]
>>> keyword_search(rows, domain__startswith='r')
[{'domain': 'root', 'type': 'soft', 'item': 'nproc', 'value': -1}]
"""
results = []
if not kwargs:
return results
# Allows us to transform the key and do lookups like __contains and
# __startswith
matchers = {
'default': lambda s, v: s == v,
'contains': lambda s, v: v in s,
'startswith': lambda s, v: s.startswith(v),
'lower_value': lambda s, v: s.lower() == v.lower(),
}
def key_match(row, key, value):
# Translate ' ' and '-' of keys in dict to '_' to match keyword arguments.
my_row = {}
for my_key, val in row.items():
my_row[my_key.replace(' ', '_').replace('-', '_')] = val
matcher_fn = matchers['default']
if '__' in key:
key, matcher = key.split('__', 1)
if matcher not in matchers:
# put key back the way we found it, matcher fn unchanged
key = key + '__' + matcher
else:
matcher_fn = matchers[matcher]
return key in my_row and matcher_fn(my_row[key], value)
data = []
for row in rows:
if all(map(lambda kv: key_match(row, kv[0], kv[1]), kwargs.items())):
data.append(row)
return data
|
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Takes a list of dictionaries and finds all the dictionaries where the
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match the keyword argument parsing. For example, the keyword argument
'fix_up_path' will match a key named 'fix-up path'.
In addition, several suffixes can be added to the key name to do partial
matching of values:
* '__contains' will test whether the data value contains the given
value.
* '__startswith' tests if the data value starts with the given value
* '__lower_value' compares the lower-case version of the data and given
values.
Arguments:
rows (list): A list of dictionaries representing the data to be
searched.
**kwargs (dict): keyword-value pairs corresponding to the fields that
need to be found and their required values in the data rows.
Returns:
(list): The list of rows that match the search keywords. If no
keyword arguments are given, no rows are returned.
Examples:
>>> rows = [
... {'domain': 'oracle', 'type': 'soft', 'item': 'nofile', 'value': 1024},
... {'domain': 'oracle', 'type': 'hard', 'item': 'nofile', 'value': 65536},
... {'domain': 'oracle', 'type': 'soft', 'item': 'stack', 'value': 10240},
... {'domain': 'oracle', 'type': 'hard', 'item': 'stack', 'value': 3276},
... {'domain': 'root', 'type': 'soft', 'item': 'nproc', 'value': -1}]
...
>>> keyword_search(rows, domain='root')
[{'domain': 'root', 'type': 'soft', 'item': 'nproc', 'value': -1}]
>>> keyword_search(rows, item__contains='c')
[{'domain': 'oracle', 'type': 'soft', 'item': 'stack', 'value': 10240},
{'domain': 'oracle', 'type': 'hard', 'item': 'stack', 'value': 3276},
{'domain': 'root', 'type': 'soft', 'item': 'nproc', 'value': -1}]
>>> keyword_search(rows, domain__startswith='r')
[{'domain': 'root', 'type': 'soft', 'item': 'nproc', 'value': -1}]
|
[
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"keys",
"and",
"values",
"match",
"those",
"found",
"in",
"the",
"keyword",
"arguments",
"."
] |
python
|
train
|
briandilley/ebs-deploy
|
ebs_deploy/__init__.py
|
https://github.com/briandilley/ebs-deploy/blob/4178c9c1282a9025fb987dab3470bea28c202e10/ebs_deploy/__init__.py#L58-L66
|
def parse_option_settings(option_settings):
"""
Parses option_settings as they are defined in the configuration file
"""
ret = []
for namespace, params in list(option_settings.items()):
for key, value in list(params.items()):
ret.append((namespace, key, value))
return ret
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"file"
] |
python
|
valid
|
fabric/fabric
|
fabric/config.py
|
https://github.com/fabric/fabric/blob/e9939d68b734935f0c98d98817912ad7c698238f/fabric/config.py#L210-L253
|
def global_defaults():
"""
Default configuration values and behavior toggles.
Fabric only extends this method in order to make minor adjustments and
additions to Invoke's `~invoke.config.Config.global_defaults`; see its
documentation for the base values, such as the config subtrees
controlling behavior of ``run`` or how ``tasks`` behave.
For Fabric-specific modifications and additions to the Invoke-level
defaults, see our own config docs at :ref:`default-values`.
.. versionadded:: 2.0
"""
# TODO: hrm should the run-related things actually be derived from the
# runner_class? E.g. Local defines local stuff, Remote defines remote
# stuff? Doesn't help with the final config tree tho...
# TODO: as to that, this is a core problem, Fabric wants split
# local/remote stuff, eg replace_env wants to be False for local and
# True remotely; shell wants to differ depending on target (and either
# way, does not want to use local interrogation for remote)
# TODO: is it worth moving all of our 'new' settings to a discrete
# namespace for cleanliness' sake? e.g. ssh.port, ssh.user etc.
# It wouldn't actually simplify this code any, but it would make it
# easier for users to determine what came from which library/repo.
defaults = InvokeConfig.global_defaults()
ours = {
# New settings
"connect_kwargs": {},
"forward_agent": False,
"gateway": None,
"load_ssh_configs": True,
"port": 22,
"run": {"replace_env": True},
"runners": {"remote": Remote},
"ssh_config_path": None,
"tasks": {"collection_name": "fabfile"},
# TODO: this becomes an override/extend once Invoke grows execution
# timeouts (which should be timeouts.execute)
"timeouts": {"connect": None},
"user": get_local_user(),
}
merge_dicts(defaults, ours)
return defaults
|
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Fabric only extends this method in order to make minor adjustments and
additions to Invoke's `~invoke.config.Config.global_defaults`; see its
documentation for the base values, such as the config subtrees
controlling behavior of ``run`` or how ``tasks`` behave.
For Fabric-specific modifications and additions to the Invoke-level
defaults, see our own config docs at :ref:`default-values`.
.. versionadded:: 2.0
|
[
"Default",
"configuration",
"values",
"and",
"behavior",
"toggles",
"."
] |
python
|
train
|
explosion/spaCy
|
spacy/util.py
|
https://github.com/explosion/spaCy/blob/8ee4100f8ffb336886208a1ea827bf4c745e2709/spacy/util.py#L406-L427
|
def expand_exc(excs, search, replace):
"""Find string in tokenizer exceptions, duplicate entry and replace string.
For example, to add additional versions with typographic apostrophes.
excs (dict): Tokenizer exceptions.
search (unicode): String to find and replace.
replace (unicode): Replacement.
RETURNS (dict): Combined tokenizer exceptions.
"""
def _fix_token(token, search, replace):
fixed = dict(token)
fixed[ORTH] = fixed[ORTH].replace(search, replace)
return fixed
new_excs = dict(excs)
for token_string, tokens in excs.items():
if search in token_string:
new_key = token_string.replace(search, replace)
new_value = [_fix_token(t, search, replace) for t in tokens]
new_excs[new_key] = new_value
return new_excs
|
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Find string in tokenizer exceptions, duplicate entry and replace string.
For example, to add additional versions with typographic apostrophes.
excs (dict): Tokenizer exceptions.
search (unicode): String to find and replace.
replace (unicode): Replacement.
RETURNS (dict): Combined tokenizer exceptions.
|
[
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"string",
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"replace",
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".",
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"example",
"to",
"add",
"additional",
"versions",
"with",
"typographic",
"apostrophes",
"."
] |
python
|
train
|
dmlc/gluon-nlp
|
src/gluonnlp/embedding/token_embedding.py
|
https://github.com/dmlc/gluon-nlp/blob/4b83eb6bcc8881e5f1081a3675adaa19fac5c0ba/src/gluonnlp/embedding/token_embedding.py#L221-L253
|
def _load_embedding(self, pretrained_file_path, elem_delim,
encoding='utf8'):
"""Load embedding vectors from a pre-trained token embedding file.
Both text files and TokenEmbedding serialization files are supported.
elem_delim and encoding are ignored for non-text files.
For every unknown token, if its representation `self.unknown_token` is encountered in the
pre-trained token embedding file, index 0 of `self.idx_to_vec` maps to the pre-trained token
embedding vector loaded from the file; otherwise, index 0 of `self.idx_to_vec` maps to the
text embedding vector initialized by `self._init_unknown_vec`.
If a token is encountered multiple times in the pre-trained text embedding file, only the
first-encountered token embedding vector will be loaded and the rest will be skipped.
"""
pretrained_file_path = os.path.expanduser(pretrained_file_path)
if not os.path.isfile(pretrained_file_path):
raise ValueError('`pretrained_file_path` must be a valid path '
'to the pre-trained token embedding file.')
logging.info('Loading pre-trained token embedding vectors from %s',
pretrained_file_path)
if pretrained_file_path.endswith('.npz'):
self._load_embedding_serialized(
pretrained_file_path=pretrained_file_path)
else:
self._load_embedding_txt(
pretrained_file_path=pretrained_file_path,
elem_delim=elem_delim, encoding=encoding)
|
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elem_delim and encoding are ignored for non-text files.
For every unknown token, if its representation `self.unknown_token` is encountered in the
pre-trained token embedding file, index 0 of `self.idx_to_vec` maps to the pre-trained token
embedding vector loaded from the file; otherwise, index 0 of `self.idx_to_vec` maps to the
text embedding vector initialized by `self._init_unknown_vec`.
If a token is encountered multiple times in the pre-trained text embedding file, only the
first-encountered token embedding vector will be loaded and the rest will be skipped.
|
[
"Load",
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"from",
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"pre",
"-",
"trained",
"token",
"embedding",
"file",
"."
] |
python
|
train
|
stain/forgetSQL
|
lib/forgetSQL.py
|
https://github.com/stain/forgetSQL/blob/2e13f983020b121fd75a95fcafce3ea75573fb6b/lib/forgetSQL.py#L439-L449
|
def delete(self):
"""Mark this object for deletion in the database.
The object will then be reset and ready for use
again with a new id.
"""
(sql, ) = self._prepareSQL("DELETE")
curs = self.cursor()
curs.execute(sql, self._getID())
curs.close()
self.reset()
|
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Mark this object for deletion in the database.
The object will then be reset and ready for use
again with a new id.
|
[
"Mark",
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] |
python
|
train
|
jobovy/galpy
|
galpy/potential/SoftenedNeedleBarPotential.py
|
https://github.com/jobovy/galpy/blob/9c5b9fe65d58835624dffe432be282060918ee08/galpy/potential/SoftenedNeedleBarPotential.py#L217-L242
|
def _dens(self,R,z,phi=0.,t=0.):
"""
NAME:
_dens
PURPOSE:
evaluate the density for this potential
INPUT:
R - Galactocentric cylindrical radius
z - vertical height
phi - azimuth
t - time
OUTPUT:
the density
HISTORY:
2016-11-04 - Written - Bovy (UofT/CCA)
"""
x,y,z= self._compute_xyz(R,phi,z,t)
zc= numpy.sqrt(z**2.+self._c2)
bzc2= (self._b+zc)**2.
bigA= self._b*y**2.+(self._b+3.*zc)*bzc2
bigC= y**2.+bzc2
return self._c2/24./numpy.pi/self._a/bigC**2./zc**3.\
*((x+self._a)*(3.*bigA*bigC+(2.*bigA+self._b*bigC)*(x+self._a)**2.)\
/(bigC+(x+self._a)**2.)**1.5\
-(x-self._a)*(3.*bigA*bigC+(2.*bigA+self._b*bigC)*(x-self._a)**2.)\
/(bigC+(x-self._a)**2.)**1.5)
|
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NAME:
_dens
PURPOSE:
evaluate the density for this potential
INPUT:
R - Galactocentric cylindrical radius
z - vertical height
phi - azimuth
t - time
OUTPUT:
the density
HISTORY:
2016-11-04 - Written - Bovy (UofT/CCA)
|
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python
|
train
|
Azure/msrest-for-python
|
msrest/serialization.py
|
https://github.com/Azure/msrest-for-python/blob/0732bc90bdb290e5f58c675ffdd7dbfa9acefc93/msrest/serialization.py#L634-L655
|
def header(self, name, data, data_type, **kwargs):
"""Serialize data intended for a request header.
:param data: The data to be serialized.
:param str data_type: The type to be serialized from.
:rtype: str
:raises: TypeError if serialization fails.
:raises: ValueError if data is None
"""
if self.client_side_validation:
data = self.validate(data, name, required=True, **kwargs)
try:
if data_type in ['[str]']:
data = ["" if d is None else d for d in data]
output = self.serialize_data(data, data_type, **kwargs)
if data_type == 'bool':
output = json.dumps(output)
except SerializationError:
raise TypeError("{} must be type {}.".format(name, data_type))
else:
return str(output)
|
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] |
Serialize data intended for a request header.
:param data: The data to be serialized.
:param str data_type: The type to be serialized from.
:rtype: str
:raises: TypeError if serialization fails.
:raises: ValueError if data is None
|
[
"Serialize",
"data",
"intended",
"for",
"a",
"request",
"header",
"."
] |
python
|
train
|
consbio/ncdjango
|
ncdjango/geoimage.py
|
https://github.com/consbio/ncdjango/blob/f807bfd1e4083ab29fbc3c4d4418be108383a710/ncdjango/geoimage.py#L121-L170
|
def warp(self, target_bbox, target_size=None):
"""Returns a copy of this image warped to a target size and bounding box"""
# Determine target size based on pixels per unit of the source image and the target bounding box reprojected
# to the source projection.
if not target_size:
px_per_unit = (float(self.image.size[0])/self.bbox.width, float(self.image.size[1])/self.bbox.height)
src_bbox = target_bbox.project(self.bbox.projection)
target_size = (int(round(src_bbox.width*px_per_unit[0])), int(round(src_bbox.height*px_per_unit[1])))
canvas_size = (
max(target_size[0], self.image.size[0]),
max(target_size[1], self.image.size[1])
)
# If target and source bounds are the same and source and target sizes are the same, return a reference to
# this image.
if self.bbox == target_bbox and self.image.size == target_size:
return self
# If target and source projections are the same, perform a simple resize
elif self.bbox.projection.srs == target_bbox.projection.srs:
to_source_image = world_to_image(self.bbox, self.image.size)
upper_left = to_source_image(*(target_bbox.xmin, target_bbox.ymax))
lower_right = to_source_image(*(target_bbox.xmax, target_bbox.ymin))
if canvas_size == self.image.size:
im = self.image
else:
im = Image.new("RGBA", canvas_size, (0, 0, 0, 0))
im.paste(self.image, (0, 0))
new_image = im.transform(
target_size, Image.EXTENT, (upper_left[0], upper_left[1], lower_right[0], lower_right[1]),
Image.NEAREST
)
# Full warp
else:
if canvas_size == self.image.size:
im = self.image
else:
im = Image.new("RGBA", canvas_size, (0, 0, 0, 0))
im.paste(self.image, (0, 0))
new_image = im.transform(
target_size, Image.MESH, self._create_mesh(target_bbox, target_size), Image.NEAREST
)
return GeoImage(new_image, target_bbox)
|
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|
[
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"image",
"warped",
"to",
"a",
"target",
"size",
"and",
"bounding",
"box"
] |
python
|
train
|
glue-viz/glue-vispy-viewers
|
glue_vispy_viewers/extern/vispy/util/config.py
|
https://github.com/glue-viz/glue-vispy-viewers/blob/54a4351d98c1f90dfb1a557d1b447c1f57470eea/glue_vispy_viewers/extern/vispy/util/config.py#L370-L379
|
def _enable_profiling():
""" Start profiling and register callback to print stats when the program
exits.
"""
import cProfile
import atexit
global _profiler
_profiler = cProfile.Profile()
_profiler.enable()
atexit.register(_profile_atexit)
|
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"_profiler",
".",
"enable",
"(",
")",
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"(",
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Start profiling and register callback to print stats when the program
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|
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python
|
train
|
numenta/htmresearch
|
projects/l2_pooling/single_column_sp.py
|
https://github.com/numenta/htmresearch/blob/70c096b09a577ea0432c3f3bfff4442d4871b7aa/projects/l2_pooling/single_column_sp.py#L32-L42
|
def createThreeObjects():
"""
Helper function that creates a set of three objects used for basic
experiments.
:return: (list(list(tuple)) List of lists of feature / location pairs.
"""
objectA = zip(range(10), range(10))
objectB = [(0, 0), (2, 2), (1, 1), (1, 4), (4, 2), (4, 1)]
objectC = [(0, 0), (1, 1), (3, 1), (0, 1)]
return [objectA, objectB, objectC]
|
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Helper function that creates a set of three objects used for basic
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|
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"three",
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"."
] |
python
|
train
|
vicalloy/lbutils
|
lbutils/widgets.py
|
https://github.com/vicalloy/lbutils/blob/66ae7e73bc939f073cdc1b91602a95e67caf4ba6/lbutils/widgets.py#L71-L75
|
def render_hidden(name, value):
""" render as hidden widget """
if isinstance(value, list):
return MultipleHiddenInput().render(name, value)
return HiddenInput().render(name, value)
|
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render as hidden widget
|
[
"render",
"as",
"hidden",
"widget"
] |
python
|
train
|
Datary/scrapbag
|
scrapbag/csvs.py
|
https://github.com/Datary/scrapbag/blob/3a4f9824ab6fe21121214ba9963690618da2c9de/scrapbag/csvs.py#L58-L85
|
def populate_csv_headers(rows,
partial_headers,
column_headers_count=1):
"""
Populate csv rows headers when are empty, extending the superior or
upper headers.
"""
result = [''] * (len(rows) - column_headers_count)
for i_index in range(0, len(partial_headers)):
for k_index in range(0, len(partial_headers[i_index])):
# missing field find for a value in upper rows
if not partial_headers[i_index][k_index] and i_index - 1 >= 0:
# TODO: It's necesary a for or only taking the
# inmediate latest row works well??
for t_index in range(i_index - 1, -1, -1):
# TODO: could suposse that allways a value exists
partial_value = partial_headers[t_index][k_index]
if partial_value:
partial_headers[i_index][k_index] = partial_value
break
result[i_index] = " ".join(map(str, partial_headers[i_index]))
return result
|
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"."
] |
python
|
train
|
psss/fmf
|
fmf/base.py
|
https://github.com/psss/fmf/blob/419f2f195d92339b8f9e5d11c0bea0f303e5fd75/fmf/base.py#L217-L276
|
def grow(self, path):
"""
Grow the metadata tree for the given directory path
Note: For each path, grow() should be run only once. Growing the tree
from the same path multiple times with attribute adding using the "+"
sign leads to adding the value more than once!
"""
if path is None:
return
path = path.rstrip("/")
log.info("Walking through directory {0}".format(
os.path.abspath(path)))
dirpath, dirnames, filenames = next(os.walk(path))
# Investigate main.fmf as the first file (for correct inheritance)
filenames = sorted(
[filename for filename in filenames if filename.endswith(SUFFIX)])
try:
filenames.insert(0, filenames.pop(filenames.index(MAIN)))
except ValueError:
pass
# Check every metadata file and load data (ignore hidden)
for filename in filenames:
if filename.startswith("."):
continue
fullpath = os.path.abspath(os.path.join(dirpath, filename))
log.info("Checking file {0}".format(fullpath))
try:
with open(fullpath) as datafile:
data = yaml.load(datafile, Loader=FullLoader)
except yaml.scanner.ScannerError as error:
raise(utils.FileError("Failed to parse '{0}'\n{1}".format(
fullpath, error)))
log.data(pretty(data))
# Handle main.fmf as data for self
if filename == MAIN:
self.sources.append(fullpath)
self.update(data)
# Handle other *.fmf files as children
else:
self.child(os.path.splitext(filename)[0], data, fullpath)
# Explore every child directory (ignore hidden dirs and subtrees)
for dirname in sorted(dirnames):
if dirname.startswith("."):
continue
# Ignore metadata subtrees
if os.path.isdir(os.path.join(path, dirname, SUFFIX)):
log.debug("Ignoring metadata tree '{0}'.".format(dirname))
continue
self.child(dirname, os.path.join(path, dirname))
# Remove empty children (ignore directories without metadata)
for name in list(self.children.keys()):
child = self.children[name]
if not child.data and not child.children:
del(self.children[name])
log.debug("Empty tree '{0}' removed.".format(child.name))
# Apply inheritance when all scattered data are gathered.
# This is done only once, from the top parent object.
if self.parent is None:
self.inherit()
|
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"# Remove empty children (ignore directories without metadata)",
"for",
"name",
"in",
"list",
"(",
"self",
".",
"children",
".",
"keys",
"(",
")",
")",
":",
"child",
"=",
"self",
".",
"children",
"[",
"name",
"]",
"if",
"not",
"child",
".",
"data",
"and",
"not",
"child",
".",
"children",
":",
"del",
"(",
"self",
".",
"children",
"[",
"name",
"]",
")",
"log",
".",
"debug",
"(",
"\"Empty tree '{0}' removed.\"",
".",
"format",
"(",
"child",
".",
"name",
")",
")",
"# Apply inheritance when all scattered data are gathered.",
"# This is done only once, from the top parent object.",
"if",
"self",
".",
"parent",
"is",
"None",
":",
"self",
".",
"inherit",
"(",
")"
] |
Grow the metadata tree for the given directory path
Note: For each path, grow() should be run only once. Growing the tree
from the same path multiple times with attribute adding using the "+"
sign leads to adding the value more than once!
|
[
"Grow",
"the",
"metadata",
"tree",
"for",
"the",
"given",
"directory",
"path"
] |
python
|
train
|
DerwenAI/pytextrank
|
pytextrank/pytextrank.py
|
https://github.com/DerwenAI/pytextrank/blob/181ea41375d29922eb96768cf6550e57a77a0c95/pytextrank/pytextrank.py#L678-L699
|
def top_sentences (kernel, path):
"""
determine distance for each sentence
"""
key_sent = {}
i = 0
if isinstance(path, str):
path = json_iter(path)
for meta in path:
graf = meta["graf"]
tagged_sent = [WordNode._make(x) for x in graf]
text = " ".join([w.raw for w in tagged_sent])
m_sent = mh_digest([str(w.word_id) for w in tagged_sent])
dist = sum([m_sent.jaccard(m) * rl.rank for rl, m in kernel])
key_sent[text] = (dist, i)
i += 1
for text, (dist, i) in sorted(key_sent.items(), key=lambda x: x[1][0], reverse=True):
yield SummarySent(dist=dist, idx=i, text=text)
|
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"top_sentences",
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"kernel",
",",
"path",
")",
":",
"key_sent",
"=",
"{",
"}",
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"=",
"0",
"if",
"isinstance",
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"path",
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"m_sent",
"=",
"mh_digest",
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"str",
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"word_id",
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"in",
"tagged_sent",
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"dist",
"=",
"sum",
"(",
"[",
"m_sent",
".",
"jaccard",
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"m",
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"*",
"rl",
".",
"rank",
"for",
"rl",
",",
"m",
"in",
"kernel",
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"key_sent",
"[",
"text",
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"=",
"(",
"dist",
",",
"i",
")",
"i",
"+=",
"1",
"for",
"text",
",",
"(",
"dist",
",",
"i",
")",
"in",
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"(",
"key_sent",
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"items",
"(",
")",
",",
"key",
"=",
"lambda",
"x",
":",
"x",
"[",
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"]",
"[",
"0",
"]",
",",
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"True",
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":",
"yield",
"SummarySent",
"(",
"dist",
"=",
"dist",
",",
"idx",
"=",
"i",
",",
"text",
"=",
"text",
")"
] |
determine distance for each sentence
|
[
"determine",
"distance",
"for",
"each",
"sentence"
] |
python
|
valid
|
sethmlarson/virtualbox-python
|
virtualbox/library.py
|
https://github.com/sethmlarson/virtualbox-python/blob/706c8e3f6e3aee17eb06458e73cbb4bc2d37878b/virtualbox/library.py#L23483-L23564
|
def merge_to(self, target):
"""Starts merging the contents of this medium and all intermediate
differencing media in the chain to the given target medium.
The target medium must be either a descendant of this medium or
its ancestor (otherwise this method will immediately return a failure).
It follows that there are two logical directions of the merge operation:
from ancestor to descendant (*forward merge*) and from descendant to
ancestor (*backward merge*). Let us consider the following medium
chain:
Base <- Diff_1 <- Diff_2
Here, calling this method on the Base medium object with
Diff_2 as an argument will be a forward merge; calling it on
Diff_2 with Base as an argument will be a backward
merge. Note that in both cases the contents of the resulting medium
will be the same, the only difference is the medium object that takes
the result of the merge operation. In case of the forward merge in the
above example, the result will be written to Diff_2; in case of
the backward merge, the result will be written to Base. In
other words, the result of the operation is always stored in the target
medium.
Upon successful operation completion, the storage units of all media in
the chain between this (source) medium and the target medium, including
the source medium itself, will be automatically deleted and the
relevant medium objects (including this medium) will become
uninitialized. This means that any attempt to call any of
their methods or attributes will fail with the
"Object not ready" (E_ACCESSDENIED) error. Applied to the above
example, the forward merge of Base to Diff_2 will
delete and uninitialize both Base and Diff_1 media.
Note that Diff_2 in this case will become a base medium
itself since it will no longer be based on any other medium.
Considering the above, all of the following conditions must be met in
order for the merge operation to succeed:
Neither this (source) medium nor any intermediate
differencing medium in the chain between it and the target
medium is attached to any virtual machine.
Neither the source medium nor the target medium is an
:py:attr:`MediumType.immutable` medium.
The part of the medium tree from the source medium to the
target medium is a linear chain, i.e. all medium in this
chain have exactly one child which is the next medium in this
chain. The only exception from this rule is the target medium in
the forward merge operation; it is allowed to have any number of
child media because the merge operation will not change its
logical contents (as it is seen by the guest OS or by children).
None of the involved media are in
:py:attr:`MediumState.locked_read` or
:py:attr:`MediumState.locked_write` state.
This (source) medium and all intermediates will be placed to :py:attr:`MediumState.deleting` state and the target medium will be
placed to :py:attr:`MediumState.locked_write` state and for the
duration of this operation.
in target of type :class:`IMedium`
Target medium.
return progress of type :class:`IProgress`
Progress object to track the operation completion.
"""
if not isinstance(target, IMedium):
raise TypeError("target can only be an instance of type IMedium")
progress = self._call("mergeTo",
in_p=[target])
progress = IProgress(progress)
return progress
|
[
"def",
"merge_to",
"(",
"self",
",",
"target",
")",
":",
"if",
"not",
"isinstance",
"(",
"target",
",",
"IMedium",
")",
":",
"raise",
"TypeError",
"(",
"\"target can only be an instance of type IMedium\"",
")",
"progress",
"=",
"self",
".",
"_call",
"(",
"\"mergeTo\"",
",",
"in_p",
"=",
"[",
"target",
"]",
")",
"progress",
"=",
"IProgress",
"(",
"progress",
")",
"return",
"progress"
] |
Starts merging the contents of this medium and all intermediate
differencing media in the chain to the given target medium.
The target medium must be either a descendant of this medium or
its ancestor (otherwise this method will immediately return a failure).
It follows that there are two logical directions of the merge operation:
from ancestor to descendant (*forward merge*) and from descendant to
ancestor (*backward merge*). Let us consider the following medium
chain:
Base <- Diff_1 <- Diff_2
Here, calling this method on the Base medium object with
Diff_2 as an argument will be a forward merge; calling it on
Diff_2 with Base as an argument will be a backward
merge. Note that in both cases the contents of the resulting medium
will be the same, the only difference is the medium object that takes
the result of the merge operation. In case of the forward merge in the
above example, the result will be written to Diff_2; in case of
the backward merge, the result will be written to Base. In
other words, the result of the operation is always stored in the target
medium.
Upon successful operation completion, the storage units of all media in
the chain between this (source) medium and the target medium, including
the source medium itself, will be automatically deleted and the
relevant medium objects (including this medium) will become
uninitialized. This means that any attempt to call any of
their methods or attributes will fail with the
"Object not ready" (E_ACCESSDENIED) error. Applied to the above
example, the forward merge of Base to Diff_2 will
delete and uninitialize both Base and Diff_1 media.
Note that Diff_2 in this case will become a base medium
itself since it will no longer be based on any other medium.
Considering the above, all of the following conditions must be met in
order for the merge operation to succeed:
Neither this (source) medium nor any intermediate
differencing medium in the chain between it and the target
medium is attached to any virtual machine.
Neither the source medium nor the target medium is an
:py:attr:`MediumType.immutable` medium.
The part of the medium tree from the source medium to the
target medium is a linear chain, i.e. all medium in this
chain have exactly one child which is the next medium in this
chain. The only exception from this rule is the target medium in
the forward merge operation; it is allowed to have any number of
child media because the merge operation will not change its
logical contents (as it is seen by the guest OS or by children).
None of the involved media are in
:py:attr:`MediumState.locked_read` or
:py:attr:`MediumState.locked_write` state.
This (source) medium and all intermediates will be placed to :py:attr:`MediumState.deleting` state and the target medium will be
placed to :py:attr:`MediumState.locked_write` state and for the
duration of this operation.
in target of type :class:`IMedium`
Target medium.
return progress of type :class:`IProgress`
Progress object to track the operation completion.
|
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"."
] |
python
|
train
|
wavycloud/pyboto3
|
pyboto3/opsworks.py
|
https://github.com/wavycloud/pyboto3/blob/924957ccf994303713a4eed90b775ff2ab95b2e5/pyboto3/opsworks.py#L729-L937
|
def create_layer(StackId=None, Type=None, Name=None, Shortname=None, Attributes=None, CloudWatchLogsConfiguration=None, CustomInstanceProfileArn=None, CustomJson=None, CustomSecurityGroupIds=None, Packages=None, VolumeConfigurations=None, EnableAutoHealing=None, AutoAssignElasticIps=None, AutoAssignPublicIps=None, CustomRecipes=None, InstallUpdatesOnBoot=None, UseEbsOptimizedInstances=None, LifecycleEventConfiguration=None):
"""
Creates a layer. For more information, see How to Create a Layer .
See also: AWS API Documentation
:example: response = client.create_layer(
StackId='string',
Type='aws-flow-ruby'|'ecs-cluster'|'java-app'|'lb'|'web'|'php-app'|'rails-app'|'nodejs-app'|'memcached'|'db-master'|'monitoring-master'|'custom',
Name='string',
Shortname='string',
Attributes={
'string': 'string'
},
CloudWatchLogsConfiguration={
'Enabled': True|False,
'LogStreams': [
{
'LogGroupName': 'string',
'DatetimeFormat': 'string',
'TimeZone': 'LOCAL'|'UTC',
'File': 'string',
'FileFingerprintLines': 'string',
'MultiLineStartPattern': 'string',
'InitialPosition': 'start_of_file'|'end_of_file',
'Encoding': 'ascii'|'big5'|'big5hkscs'|'cp037'|'cp424'|'cp437'|'cp500'|'cp720'|'cp737'|'cp775'|'cp850'|'cp852'|'cp855'|'cp856'|'cp857'|'cp858'|'cp860'|'cp861'|'cp862'|'cp863'|'cp864'|'cp865'|'cp866'|'cp869'|'cp874'|'cp875'|'cp932'|'cp949'|'cp950'|'cp1006'|'cp1026'|'cp1140'|'cp1250'|'cp1251'|'cp1252'|'cp1253'|'cp1254'|'cp1255'|'cp1256'|'cp1257'|'cp1258'|'euc_jp'|'euc_jis_2004'|'euc_jisx0213'|'euc_kr'|'gb2312'|'gbk'|'gb18030'|'hz'|'iso2022_jp'|'iso2022_jp_1'|'iso2022_jp_2'|'iso2022_jp_2004'|'iso2022_jp_3'|'iso2022_jp_ext'|'iso2022_kr'|'latin_1'|'iso8859_2'|'iso8859_3'|'iso8859_4'|'iso8859_5'|'iso8859_6'|'iso8859_7'|'iso8859_8'|'iso8859_9'|'iso8859_10'|'iso8859_13'|'iso8859_14'|'iso8859_15'|'iso8859_16'|'johab'|'koi8_r'|'koi8_u'|'mac_cyrillic'|'mac_greek'|'mac_iceland'|'mac_latin2'|'mac_roman'|'mac_turkish'|'ptcp154'|'shift_jis'|'shift_jis_2004'|'shift_jisx0213'|'utf_32'|'utf_32_be'|'utf_32_le'|'utf_16'|'utf_16_be'|'utf_16_le'|'utf_7'|'utf_8'|'utf_8_sig',
'BufferDuration': 123,
'BatchCount': 123,
'BatchSize': 123
},
]
},
CustomInstanceProfileArn='string',
CustomJson='string',
CustomSecurityGroupIds=[
'string',
],
Packages=[
'string',
],
VolumeConfigurations=[
{
'MountPoint': 'string',
'RaidLevel': 123,
'NumberOfDisks': 123,
'Size': 123,
'VolumeType': 'string',
'Iops': 123
},
],
EnableAutoHealing=True|False,
AutoAssignElasticIps=True|False,
AutoAssignPublicIps=True|False,
CustomRecipes={
'Setup': [
'string',
],
'Configure': [
'string',
],
'Deploy': [
'string',
],
'Undeploy': [
'string',
],
'Shutdown': [
'string',
]
},
InstallUpdatesOnBoot=True|False,
UseEbsOptimizedInstances=True|False,
LifecycleEventConfiguration={
'Shutdown': {
'ExecutionTimeout': 123,
'DelayUntilElbConnectionsDrained': True|False
}
}
)
:type StackId: string
:param StackId: [REQUIRED]
The layer stack ID.
:type Type: string
:param Type: [REQUIRED]
The layer type. A stack cannot have more than one built-in layer of the same type. It can have any number of custom layers. Built-in layers are not available in Chef 12 stacks.
:type Name: string
:param Name: [REQUIRED]
The layer name, which is used by the console.
:type Shortname: string
:param Shortname: [REQUIRED]
For custom layers only, use this parameter to specify the layer's short name, which is used internally by AWS OpsWorks Stacks and by Chef recipes. The short name is also used as the name for the directory where your app files are installed. It can have a maximum of 200 characters, which are limited to the alphanumeric characters, '-', '_', and '.'.
The built-in layers' short names are defined by AWS OpsWorks Stacks. For more information, see the Layer Reference .
:type Attributes: dict
:param Attributes: One or more user-defined key-value pairs to be added to the stack attributes.
To create a cluster layer, set the EcsClusterArn attribute to the cluster's ARN.
(string) --
(string) --
:type CloudWatchLogsConfiguration: dict
:param CloudWatchLogsConfiguration: Specifies CloudWatch Logs configuration options for the layer. For more information, see CloudWatchLogsLogStream .
Enabled (boolean) --Whether CloudWatch Logs is enabled for a layer.
LogStreams (list) --A list of configuration options for CloudWatch Logs.
(dict) --Describes the Amazon CloudWatch logs configuration for a layer. For detailed information about members of this data type, see the CloudWatch Logs Agent Reference .
LogGroupName (string) --Specifies the destination log group. A log group is created automatically if it doesn't already exist. Log group names can be between 1 and 512 characters long. Allowed characters include a-z, A-Z, 0-9, '_' (underscore), '-' (hyphen), '/' (forward slash), and '.' (period).
DatetimeFormat (string) --Specifies how the time stamp is extracted from logs. For more information, see the CloudWatch Logs Agent Reference .
TimeZone (string) --Specifies the time zone of log event time stamps.
File (string) --Specifies log files that you want to push to CloudWatch Logs.
File can point to a specific file or multiple files (by using wild card characters such as /var/log/system.log* ). Only the latest file is pushed to CloudWatch Logs, based on file modification time. We recommend that you use wild card characters to specify a series of files of the same type, such as access_log.2014-06-01-01 , access_log.2014-06-01-02 , and so on by using a pattern like access_log.* . Don't use a wildcard to match multiple file types, such as access_log_80 and access_log_443 . To specify multiple, different file types, add another log stream entry to the configuration file, so that each log file type is stored in a different log group.
Zipped files are not supported.
FileFingerprintLines (string) --Specifies the range of lines for identifying a file. The valid values are one number, or two dash-delimited numbers, such as '1', '2-5'. The default value is '1', meaning the first line is used to calculate the fingerprint. Fingerprint lines are not sent to CloudWatch Logs unless all specified lines are available.
MultiLineStartPattern (string) --Specifies the pattern for identifying the start of a log message.
InitialPosition (string) --Specifies where to start to read data (start_of_file or end_of_file). The default is start_of_file. This setting is only used if there is no state persisted for that log stream.
Encoding (string) --Specifies the encoding of the log file so that the file can be read correctly. The default is utf_8 . Encodings supported by Python codecs.decode() can be used here.
BufferDuration (integer) --Specifies the time duration for the batching of log events. The minimum value is 5000ms and default value is 5000ms.
BatchCount (integer) --Specifies the max number of log events in a batch, up to 10000. The default value is 1000.
BatchSize (integer) --Specifies the maximum size of log events in a batch, in bytes, up to 1048576 bytes. The default value is 32768 bytes. This size is calculated as the sum of all event messages in UTF-8, plus 26 bytes for each log event.
:type CustomInstanceProfileArn: string
:param CustomInstanceProfileArn: The ARN of an IAM profile to be used for the layer's EC2 instances. For more information about IAM ARNs, see Using Identifiers .
:type CustomJson: string
:param CustomJson: A JSON-formatted string containing custom stack configuration and deployment attributes to be installed on the layer's instances. For more information, see Using Custom JSON . This feature is supported as of version 1.7.42 of the AWS CLI.
:type CustomSecurityGroupIds: list
:param CustomSecurityGroupIds: An array containing the layer custom security group IDs.
(string) --
:type Packages: list
:param Packages: An array of Package objects that describes the layer packages.
(string) --
:type VolumeConfigurations: list
:param VolumeConfigurations: A VolumeConfigurations object that describes the layer's Amazon EBS volumes.
(dict) --Describes an Amazon EBS volume configuration.
MountPoint (string) -- [REQUIRED]The volume mount point. For example '/dev/sdh'.
RaidLevel (integer) --The volume RAID level .
NumberOfDisks (integer) -- [REQUIRED]The number of disks in the volume.
Size (integer) -- [REQUIRED]The volume size.
VolumeType (string) --The volume type:
standard - Magnetic
io1 - Provisioned IOPS (SSD)
gp2 - General Purpose (SSD)
Iops (integer) --For PIOPS volumes, the IOPS per disk.
:type EnableAutoHealing: boolean
:param EnableAutoHealing: Whether to disable auto healing for the layer.
:type AutoAssignElasticIps: boolean
:param AutoAssignElasticIps: Whether to automatically assign an Elastic IP address to the layer's instances. For more information, see How to Edit a Layer .
:type AutoAssignPublicIps: boolean
:param AutoAssignPublicIps: For stacks that are running in a VPC, whether to automatically assign a public IP address to the layer's instances. For more information, see How to Edit a Layer .
:type CustomRecipes: dict
:param CustomRecipes: A LayerCustomRecipes object that specifies the layer custom recipes.
Setup (list) --An array of custom recipe names to be run following a setup event.
(string) --
Configure (list) --An array of custom recipe names to be run following a configure event.
(string) --
Deploy (list) --An array of custom recipe names to be run following a deploy event.
(string) --
Undeploy (list) --An array of custom recipe names to be run following a undeploy event.
(string) --
Shutdown (list) --An array of custom recipe names to be run following a shutdown event.
(string) --
:type InstallUpdatesOnBoot: boolean
:param InstallUpdatesOnBoot: Whether to install operating system and package updates when the instance boots. The default value is true . To control when updates are installed, set this value to false . You must then update your instances manually by using CreateDeployment to run the update_dependencies stack command or by manually running yum (Amazon Linux) or apt-get (Ubuntu) on the instances.
Note
To ensure that your instances have the latest security updates, we strongly recommend using the default value of true .
:type UseEbsOptimizedInstances: boolean
:param UseEbsOptimizedInstances: Whether to use Amazon EBS-optimized instances.
:type LifecycleEventConfiguration: dict
:param LifecycleEventConfiguration: A LifeCycleEventConfiguration object that you can use to configure the Shutdown event to specify an execution timeout and enable or disable Elastic Load Balancer connection draining.
Shutdown (dict) --A ShutdownEventConfiguration object that specifies the Shutdown event configuration.
ExecutionTimeout (integer) --The time, in seconds, that AWS OpsWorks Stacks will wait after triggering a Shutdown event before shutting down an instance.
DelayUntilElbConnectionsDrained (boolean) --Whether to enable Elastic Load Balancing connection draining. For more information, see Connection Draining
:rtype: dict
:return: {
'LayerId': 'string'
}
"""
pass
|
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Creates a layer. For more information, see How to Create a Layer .
See also: AWS API Documentation
:example: response = client.create_layer(
StackId='string',
Type='aws-flow-ruby'|'ecs-cluster'|'java-app'|'lb'|'web'|'php-app'|'rails-app'|'nodejs-app'|'memcached'|'db-master'|'monitoring-master'|'custom',
Name='string',
Shortname='string',
Attributes={
'string': 'string'
},
CloudWatchLogsConfiguration={
'Enabled': True|False,
'LogStreams': [
{
'LogGroupName': 'string',
'DatetimeFormat': 'string',
'TimeZone': 'LOCAL'|'UTC',
'File': 'string',
'FileFingerprintLines': 'string',
'MultiLineStartPattern': 'string',
'InitialPosition': 'start_of_file'|'end_of_file',
'Encoding': 'ascii'|'big5'|'big5hkscs'|'cp037'|'cp424'|'cp437'|'cp500'|'cp720'|'cp737'|'cp775'|'cp850'|'cp852'|'cp855'|'cp856'|'cp857'|'cp858'|'cp860'|'cp861'|'cp862'|'cp863'|'cp864'|'cp865'|'cp866'|'cp869'|'cp874'|'cp875'|'cp932'|'cp949'|'cp950'|'cp1006'|'cp1026'|'cp1140'|'cp1250'|'cp1251'|'cp1252'|'cp1253'|'cp1254'|'cp1255'|'cp1256'|'cp1257'|'cp1258'|'euc_jp'|'euc_jis_2004'|'euc_jisx0213'|'euc_kr'|'gb2312'|'gbk'|'gb18030'|'hz'|'iso2022_jp'|'iso2022_jp_1'|'iso2022_jp_2'|'iso2022_jp_2004'|'iso2022_jp_3'|'iso2022_jp_ext'|'iso2022_kr'|'latin_1'|'iso8859_2'|'iso8859_3'|'iso8859_4'|'iso8859_5'|'iso8859_6'|'iso8859_7'|'iso8859_8'|'iso8859_9'|'iso8859_10'|'iso8859_13'|'iso8859_14'|'iso8859_15'|'iso8859_16'|'johab'|'koi8_r'|'koi8_u'|'mac_cyrillic'|'mac_greek'|'mac_iceland'|'mac_latin2'|'mac_roman'|'mac_turkish'|'ptcp154'|'shift_jis'|'shift_jis_2004'|'shift_jisx0213'|'utf_32'|'utf_32_be'|'utf_32_le'|'utf_16'|'utf_16_be'|'utf_16_le'|'utf_7'|'utf_8'|'utf_8_sig',
'BufferDuration': 123,
'BatchCount': 123,
'BatchSize': 123
},
]
},
CustomInstanceProfileArn='string',
CustomJson='string',
CustomSecurityGroupIds=[
'string',
],
Packages=[
'string',
],
VolumeConfigurations=[
{
'MountPoint': 'string',
'RaidLevel': 123,
'NumberOfDisks': 123,
'Size': 123,
'VolumeType': 'string',
'Iops': 123
},
],
EnableAutoHealing=True|False,
AutoAssignElasticIps=True|False,
AutoAssignPublicIps=True|False,
CustomRecipes={
'Setup': [
'string',
],
'Configure': [
'string',
],
'Deploy': [
'string',
],
'Undeploy': [
'string',
],
'Shutdown': [
'string',
]
},
InstallUpdatesOnBoot=True|False,
UseEbsOptimizedInstances=True|False,
LifecycleEventConfiguration={
'Shutdown': {
'ExecutionTimeout': 123,
'DelayUntilElbConnectionsDrained': True|False
}
}
)
:type StackId: string
:param StackId: [REQUIRED]
The layer stack ID.
:type Type: string
:param Type: [REQUIRED]
The layer type. A stack cannot have more than one built-in layer of the same type. It can have any number of custom layers. Built-in layers are not available in Chef 12 stacks.
:type Name: string
:param Name: [REQUIRED]
The layer name, which is used by the console.
:type Shortname: string
:param Shortname: [REQUIRED]
For custom layers only, use this parameter to specify the layer's short name, which is used internally by AWS OpsWorks Stacks and by Chef recipes. The short name is also used as the name for the directory where your app files are installed. It can have a maximum of 200 characters, which are limited to the alphanumeric characters, '-', '_', and '.'.
The built-in layers' short names are defined by AWS OpsWorks Stacks. For more information, see the Layer Reference .
:type Attributes: dict
:param Attributes: One or more user-defined key-value pairs to be added to the stack attributes.
To create a cluster layer, set the EcsClusterArn attribute to the cluster's ARN.
(string) --
(string) --
:type CloudWatchLogsConfiguration: dict
:param CloudWatchLogsConfiguration: Specifies CloudWatch Logs configuration options for the layer. For more information, see CloudWatchLogsLogStream .
Enabled (boolean) --Whether CloudWatch Logs is enabled for a layer.
LogStreams (list) --A list of configuration options for CloudWatch Logs.
(dict) --Describes the Amazon CloudWatch logs configuration for a layer. For detailed information about members of this data type, see the CloudWatch Logs Agent Reference .
LogGroupName (string) --Specifies the destination log group. A log group is created automatically if it doesn't already exist. Log group names can be between 1 and 512 characters long. Allowed characters include a-z, A-Z, 0-9, '_' (underscore), '-' (hyphen), '/' (forward slash), and '.' (period).
DatetimeFormat (string) --Specifies how the time stamp is extracted from logs. For more information, see the CloudWatch Logs Agent Reference .
TimeZone (string) --Specifies the time zone of log event time stamps.
File (string) --Specifies log files that you want to push to CloudWatch Logs.
File can point to a specific file or multiple files (by using wild card characters such as /var/log/system.log* ). Only the latest file is pushed to CloudWatch Logs, based on file modification time. We recommend that you use wild card characters to specify a series of files of the same type, such as access_log.2014-06-01-01 , access_log.2014-06-01-02 , and so on by using a pattern like access_log.* . Don't use a wildcard to match multiple file types, such as access_log_80 and access_log_443 . To specify multiple, different file types, add another log stream entry to the configuration file, so that each log file type is stored in a different log group.
Zipped files are not supported.
FileFingerprintLines (string) --Specifies the range of lines for identifying a file. The valid values are one number, or two dash-delimited numbers, such as '1', '2-5'. The default value is '1', meaning the first line is used to calculate the fingerprint. Fingerprint lines are not sent to CloudWatch Logs unless all specified lines are available.
MultiLineStartPattern (string) --Specifies the pattern for identifying the start of a log message.
InitialPosition (string) --Specifies where to start to read data (start_of_file or end_of_file). The default is start_of_file. This setting is only used if there is no state persisted for that log stream.
Encoding (string) --Specifies the encoding of the log file so that the file can be read correctly. The default is utf_8 . Encodings supported by Python codecs.decode() can be used here.
BufferDuration (integer) --Specifies the time duration for the batching of log events. The minimum value is 5000ms and default value is 5000ms.
BatchCount (integer) --Specifies the max number of log events in a batch, up to 10000. The default value is 1000.
BatchSize (integer) --Specifies the maximum size of log events in a batch, in bytes, up to 1048576 bytes. The default value is 32768 bytes. This size is calculated as the sum of all event messages in UTF-8, plus 26 bytes for each log event.
:type CustomInstanceProfileArn: string
:param CustomInstanceProfileArn: The ARN of an IAM profile to be used for the layer's EC2 instances. For more information about IAM ARNs, see Using Identifiers .
:type CustomJson: string
:param CustomJson: A JSON-formatted string containing custom stack configuration and deployment attributes to be installed on the layer's instances. For more information, see Using Custom JSON . This feature is supported as of version 1.7.42 of the AWS CLI.
:type CustomSecurityGroupIds: list
:param CustomSecurityGroupIds: An array containing the layer custom security group IDs.
(string) --
:type Packages: list
:param Packages: An array of Package objects that describes the layer packages.
(string) --
:type VolumeConfigurations: list
:param VolumeConfigurations: A VolumeConfigurations object that describes the layer's Amazon EBS volumes.
(dict) --Describes an Amazon EBS volume configuration.
MountPoint (string) -- [REQUIRED]The volume mount point. For example '/dev/sdh'.
RaidLevel (integer) --The volume RAID level .
NumberOfDisks (integer) -- [REQUIRED]The number of disks in the volume.
Size (integer) -- [REQUIRED]The volume size.
VolumeType (string) --The volume type:
standard - Magnetic
io1 - Provisioned IOPS (SSD)
gp2 - General Purpose (SSD)
Iops (integer) --For PIOPS volumes, the IOPS per disk.
:type EnableAutoHealing: boolean
:param EnableAutoHealing: Whether to disable auto healing for the layer.
:type AutoAssignElasticIps: boolean
:param AutoAssignElasticIps: Whether to automatically assign an Elastic IP address to the layer's instances. For more information, see How to Edit a Layer .
:type AutoAssignPublicIps: boolean
:param AutoAssignPublicIps: For stacks that are running in a VPC, whether to automatically assign a public IP address to the layer's instances. For more information, see How to Edit a Layer .
:type CustomRecipes: dict
:param CustomRecipes: A LayerCustomRecipes object that specifies the layer custom recipes.
Setup (list) --An array of custom recipe names to be run following a setup event.
(string) --
Configure (list) --An array of custom recipe names to be run following a configure event.
(string) --
Deploy (list) --An array of custom recipe names to be run following a deploy event.
(string) --
Undeploy (list) --An array of custom recipe names to be run following a undeploy event.
(string) --
Shutdown (list) --An array of custom recipe names to be run following a shutdown event.
(string) --
:type InstallUpdatesOnBoot: boolean
:param InstallUpdatesOnBoot: Whether to install operating system and package updates when the instance boots. The default value is true . To control when updates are installed, set this value to false . You must then update your instances manually by using CreateDeployment to run the update_dependencies stack command or by manually running yum (Amazon Linux) or apt-get (Ubuntu) on the instances.
Note
To ensure that your instances have the latest security updates, we strongly recommend using the default value of true .
:type UseEbsOptimizedInstances: boolean
:param UseEbsOptimizedInstances: Whether to use Amazon EBS-optimized instances.
:type LifecycleEventConfiguration: dict
:param LifecycleEventConfiguration: A LifeCycleEventConfiguration object that you can use to configure the Shutdown event to specify an execution timeout and enable or disable Elastic Load Balancer connection draining.
Shutdown (dict) --A ShutdownEventConfiguration object that specifies the Shutdown event configuration.
ExecutionTimeout (integer) --The time, in seconds, that AWS OpsWorks Stacks will wait after triggering a Shutdown event before shutting down an instance.
DelayUntilElbConnectionsDrained (boolean) --Whether to enable Elastic Load Balancing connection draining. For more information, see Connection Draining
:rtype: dict
:return: {
'LayerId': 'string'
}
|
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python
|
train
|
google/pyringe
|
pyringe/payload/exec_socket.py
|
https://github.com/google/pyringe/blob/76dff5d1ac29cd5e7bf32677654a83291a15ad8a/pyringe/payload/exec_socket.py#L24-L64
|
def StartExecServer():
"""Opens a socket in /tmp, execs data from it and writes results back."""
sockdir = '/tmp/pyringe_%s' % os.getpid()
if not os.path.isdir(sockdir):
os.mkdir(sockdir)
socket_path = ('%s/%s.execsock' %
(sockdir, threading.current_thread().ident))
if os.path.exists(socket_path):
os.remove(socket_path)
exec_sock = socket.socket(socket.AF_UNIX, socket.SOCK_STREAM)
exec_sock.bind(socket_path)
exec_sock.listen(5)
shutdown = False
while not shutdown:
conn, _ = exec_sock.accept()
data = conn.recv(1024)
if data:
if data == '__kill__':
shutdown = True
conn.send('__kill_ack__')
break
data = json.loads(data)
try:
conn.sendall(json.dumps(eval(data)))
except SyntaxError:
# Okay, so it probably wasn't an expression
try:
exec data # pylint: disable=exec-used
except: # pylint: disable=bare-except
# Whatever goes wrong when exec'ing this, we don't want to crash.
# TODO: think of a way to properly tunnel exceptions, if
# possible without introducing more magic strings.
pass
finally:
conn.sendall(json.dumps(None))
exec_sock.shutdown(socket.SHUT_RDWR)
exec_sock.close()
os.remove(socket_path)
|
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"(",
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")",
")",
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"(",
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"SHUT_RDWR",
")",
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".",
"close",
"(",
")",
"os",
".",
"remove",
"(",
"socket_path",
")"
] |
Opens a socket in /tmp, execs data from it and writes results back.
|
[
"Opens",
"a",
"socket",
"in",
"/",
"tmp",
"execs",
"data",
"from",
"it",
"and",
"writes",
"results",
"back",
"."
] |
python
|
train
|
wikimedia/ores
|
setup.py
|
https://github.com/wikimedia/ores/blob/75599b6ba0172c86d94f7f7e1e05a3c282333a18/setup.py#L20-L32
|
def requirements(fname):
"""
Generator to parse requirements.txt file
Supports bits of extended pip format (git urls)
"""
with open(fname) as f:
for line in f:
match = re.search('#egg=(.*)$', line)
if match:
yield match.groups()[0]
else:
yield line.strip()
|
[
"def",
"requirements",
"(",
"fname",
")",
":",
"with",
"open",
"(",
"fname",
")",
"as",
"f",
":",
"for",
"line",
"in",
"f",
":",
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"=",
"re",
".",
"search",
"(",
"'#egg=(.*)$'",
",",
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"if",
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":",
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"match",
".",
"groups",
"(",
")",
"[",
"0",
"]",
"else",
":",
"yield",
"line",
".",
"strip",
"(",
")"
] |
Generator to parse requirements.txt file
Supports bits of extended pip format (git urls)
|
[
"Generator",
"to",
"parse",
"requirements",
".",
"txt",
"file"
] |
python
|
train
|
mottosso/be
|
be/util.py
|
https://github.com/mottosso/be/blob/0f3d4f3597c71223f616d78c6d9b2c8dffcd8a71/be/util.py#L100-L115
|
def dump(context=os.environ):
"""Dump current environment as a dictionary
Arguments:
context (dict, optional): Current context, defaults
to the current environment.
"""
output = {}
for key, value in context.iteritems():
if not key.startswith("BE_"):
continue
output[key[3:].lower()] = value
return output
|
[
"def",
"dump",
"(",
"context",
"=",
"os",
".",
"environ",
")",
":",
"output",
"=",
"{",
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"for",
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",",
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".",
"iteritems",
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")",
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"key",
".",
"startswith",
"(",
"\"BE_\"",
")",
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"output",
"[",
"key",
"[",
"3",
":",
"]",
".",
"lower",
"(",
")",
"]",
"=",
"value",
"return",
"output"
] |
Dump current environment as a dictionary
Arguments:
context (dict, optional): Current context, defaults
to the current environment.
|
[
"Dump",
"current",
"environment",
"as",
"a",
"dictionary"
] |
python
|
train
|
guaix-ucm/numina
|
numina/dal/mockdal.py
|
https://github.com/guaix-ucm/numina/blob/6c829495df8937f77c2de9383c1038ffb3e713e3/numina/dal/mockdal.py#L32-L34
|
def search_prod_type_tags(self, ins, type, tags, pipeline):
'''Returns the first coincidence...'''
return StoredProduct(id=100, content='null.fits', tags={})
|
[
"def",
"search_prod_type_tags",
"(",
"self",
",",
"ins",
",",
"type",
",",
"tags",
",",
"pipeline",
")",
":",
"return",
"StoredProduct",
"(",
"id",
"=",
"100",
",",
"content",
"=",
"'null.fits'",
",",
"tags",
"=",
"{",
"}",
")"
] |
Returns the first coincidence...
|
[
"Returns",
"the",
"first",
"coincidence",
"..."
] |
python
|
train
|
note35/sinon
|
sinon/lib/spy.py
|
https://github.com/note35/sinon/blob/f1d551b679b393d64d926a8a279320904c38d0f5/sinon/lib/spy.py#L332-L344
|
def threw(self, error_type=None):
"""
Determining whether the exception is thrown
Args:
error_type:
None: checking without specified exception
Specified Exception
Return: Boolean
"""
if not error_type:
return True if len(self.exceptions) > 0 else False
else:
return uch.obj_in_list(self.exceptions, error_type)
|
[
"def",
"threw",
"(",
"self",
",",
"error_type",
"=",
"None",
")",
":",
"if",
"not",
"error_type",
":",
"return",
"True",
"if",
"len",
"(",
"self",
".",
"exceptions",
")",
">",
"0",
"else",
"False",
"else",
":",
"return",
"uch",
".",
"obj_in_list",
"(",
"self",
".",
"exceptions",
",",
"error_type",
")"
] |
Determining whether the exception is thrown
Args:
error_type:
None: checking without specified exception
Specified Exception
Return: Boolean
|
[
"Determining",
"whether",
"the",
"exception",
"is",
"thrown",
"Args",
":",
"error_type",
":",
"None",
":",
"checking",
"without",
"specified",
"exception",
"Specified",
"Exception",
"Return",
":",
"Boolean"
] |
python
|
train
|
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