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split_0_train_1400
split_0_train_1400
[ { "id": "split_0_train_1400_passage", "type": "progene_text", "text": [ "Cryptochrome 1 ( cry1 ) , cryptochrome 2 ( cry2 ) and phototropin are the blue / ultraviolet - A light receptors that have been characterized in Arabidopsis ." ], "offsets": [ [ 0, 158 ] ] } ]
[ { "id": "split_0_train_2068_entity", "type": "progene_text", "text": [ "Cryptochrome 1" ], "offsets": [ [ 0, 14 ] ], "normalized": [] }, { "id": "split_0_train_2069_entity", "type": "progene_text", "text": [ "cry1" ], "offsets": [ [ 17, 21 ] ], "normalized": [] }, { "id": "split_0_train_2070_entity", "type": "progene_text", "text": [ "cryptochrome 2" ], "offsets": [ [ 26, 40 ] ], "normalized": [] }, { "id": "split_0_train_2071_entity", "type": "progene_text", "text": [ "cry2" ], "offsets": [ [ 43, 47 ] ], "normalized": [] }, { "id": "split_0_train_2072_entity", "type": "progene_text", "text": [ "phototropin" ], "offsets": [ [ 54, 65 ] ], "normalized": [] }, { "id": "split_0_train_2073_entity", "type": "progene_text", "text": [ "blue / ultraviolet - A light receptors" ], "offsets": [ [ 74, 112 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1401
split_0_train_1401
[ { "id": "split_0_train_1401_passage", "type": "progene_text", "text": [ "Previous studies showed that modulation of many physiological responses in plants is achieved by genetic interactions between different photoreceptors ; however , little is known about the nature of these interactions and their roles in the signal transduction pathway ." ], "offsets": [ [ 0, 270 ] ] } ]
[ { "id": "split_0_train_2074_entity", "type": "progene_text", "text": [ "photoreceptors" ], "offsets": [ [ 136, 150 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1402
split_0_train_1402
[ { "id": "split_0_train_1402_passage", "type": "progene_text", "text": [ "Here we show the genetic interaction that occurs between the Arabidopsis photoreceptors phyB and cry2 in the control of flowering time , hypocotyl elongation and circadian period by the clock ." ], "offsets": [ [ 0, 193 ] ] } ]
[ { "id": "split_0_train_2075_entity", "type": "progene_text", "text": [ "photoreceptors" ], "offsets": [ [ 73, 87 ] ], "normalized": [] }, { "id": "split_0_train_2076_entity", "type": "progene_text", "text": [ "phyB" ], "offsets": [ [ 88, 92 ] ], "normalized": [] }, { "id": "split_0_train_2077_entity", "type": "progene_text", "text": [ "cry2" ], "offsets": [ [ 97, 101 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1403
split_0_train_1403
[ { "id": "split_0_train_1403_passage", "type": "progene_text", "text": [ "PhyB interacts directly with cry2 as observed in co - immunoprecipitation experiments with transgenic Arabidopsis plants overexpressing cry2 ." ], "offsets": [ [ 0, 142 ] ] } ]
[ { "id": "split_0_train_2078_entity", "type": "progene_text", "text": [ "PhyB" ], "offsets": [ [ 0, 4 ] ], "normalized": [] }, { "id": "split_0_train_2079_entity", "type": "progene_text", "text": [ "cry2" ], "offsets": [ [ 29, 33 ] ], "normalized": [] }, { "id": "split_0_train_2080_entity", "type": "progene_text", "text": [ "cry2" ], "offsets": [ [ 136, 140 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1404
split_0_train_1404
[ { "id": "split_0_train_1404_passage", "type": "progene_text", "text": [ "Using fluorescent resonance energy transfer microscopy , we show that phyB and cry2 interact in nuclear speckles that are formed in a light - dependent fashion ." ], "offsets": [ [ 0, 161 ] ] } ]
[ { "id": "split_0_train_2081_entity", "type": "progene_text", "text": [ "phyB" ], "offsets": [ [ 70, 74 ] ], "normalized": [] }, { "id": "split_0_train_2082_entity", "type": "progene_text", "text": [ "cry2" ], "offsets": [ [ 79, 83 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1405
split_0_train_1405
[ { "id": "split_0_train_1405_passage", "type": "progene_text", "text": [ "Identification of two putative novel folate receptor genes in humans and mouse ." ], "offsets": [ [ 0, 80 ] ] } ]
[ { "id": "split_0_train_2083_entity", "type": "progene_text", "text": [ "folate receptor" ], "offsets": [ [ 37, 52 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1406
split_0_train_1406
[ { "id": "split_0_train_1406_passage", "type": "progene_text", "text": [ "Utilizing a ' database mining ' strategy to detect novel folate receptors ( FR ) , we identified two potential novel members in the mouse and human ." ], "offsets": [ [ 0, 149 ] ] } ]
[ { "id": "split_0_train_2084_entity", "type": "progene_text", "text": [ "folate receptors" ], "offsets": [ [ 57, 73 ] ], "normalized": [] }, { "id": "split_0_train_2085_entity", "type": "progene_text", "text": [ "FR" ], "offsets": [ [ 76, 78 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1407
split_0_train_1407
[ { "id": "split_0_train_1407_passage", "type": "progene_text", "text": [ "The mouse gene ( Folbp3 ) was sequenced and found to predict a 28.2 kDa protein that consists of 244 amino acids that is highly expressed in both the thymus and spleen , suggesting a potential role in the immune system ." ], "offsets": [ [ 0, 220 ] ] } ]
[ { "id": "split_0_train_2086_entity", "type": "progene_text", "text": [ "Folbp3" ], "offsets": [ [ 17, 23 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1408
split_0_train_1408
[ { "id": "split_0_train_1408_passage", "type": "progene_text", "text": [ "The human gene ( FR - delta ) is mapped to chromosome 11q14 , and predicts a 27.7 kDa protein that is comprised of 241 amino acids ." ], "offsets": [ [ 0, 132 ] ] } ]
[ { "id": "split_0_train_2087_entity", "type": "progene_text", "text": [ "FR - delta" ], "offsets": [ [ 17, 27 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1409
split_0_train_1409
[ { "id": "split_0_train_1409_passage", "type": "progene_text", "text": [ "However , expression of the human gene was not detected in 59 samples from both adult and embryonic tissue sources , suggesting a highly restricted spatial / temporal expression pattern , an alternatively spliced variant or an additional FR pseudogene ." ], "offsets": [ [ 0, 253 ] ] } ]
[ { "id": "split_0_train_2088_entity", "type": "progene_text", "text": [ "FR pseudogene" ], "offsets": [ [ 238, 251 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1410
split_0_train_1410
[ { "id": "split_0_train_1410_passage", "type": "progene_text", "text": [ "Using T31 mouse radiation hybrid mapping , Folbp3 was mapped to a region on mouse chromosome 9 that is syntenic to human chromosome 19p13 ." ], "offsets": [ [ 0, 139 ] ] } ]
[ { "id": "split_0_train_2089_entity", "type": "progene_text", "text": [ "Folbp3" ], "offsets": [ [ 43, 49 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1411
split_0_train_1411
[ { "id": "split_0_train_1411_passage", "type": "progene_text", "text": [ "As the chromosomal locations of Folbp1 murine and Folbp2 genes were previously unknown , we utilized the same approach and mapped both genes to a region of mouse chromosome 7 that is syntenic to the human FR loci on chromosome 11q13 ." ], "offsets": [ [ 0, 234 ] ] } ]
[ { "id": "split_0_train_2090_entity", "type": "progene_text", "text": [ "Folbp1" ], "offsets": [ [ 32, 38 ] ], "normalized": [] }, { "id": "split_0_train_2091_entity", "type": "progene_text", "text": [ "Folbp2" ], "offsets": [ [ 50, 56 ] ], "normalized": [] }, { "id": "split_0_train_2092_entity", "type": "progene_text", "text": [ "FR" ], "offsets": [ [ 205, 207 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1412
split_0_train_1412
[ { "id": "split_0_train_1412_passage", "type": "progene_text", "text": [ "Adhesion of fibronectin , vitronectin , laminin , and collagen type IV to intraocular lens materials in pseudophakic human autopsy eyes ." ], "offsets": [ [ 0, 137 ] ] } ]
[ { "id": "split_0_train_2093_entity", "type": "progene_text", "text": [ "fibronectin" ], "offsets": [ [ 12, 23 ] ], "normalized": [] }, { "id": "split_0_train_2094_entity", "type": "progene_text", "text": [ "vitronectin" ], "offsets": [ [ 26, 37 ] ], "normalized": [] }, { "id": "split_0_train_2095_entity", "type": "progene_text", "text": [ "laminin" ], "offsets": [ [ 40, 47 ] ], "normalized": [] }, { "id": "split_0_train_2096_entity", "type": "progene_text", "text": [ "collagen type IV" ], "offsets": [ [ 54, 70 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1413
split_0_train_1413
[ { "id": "split_0_train_1413_passage", "type": "progene_text", "text": [ "Part 1 : histological sections ." ], "offsets": [ [ 0, 32 ] ] } ]
[]
[]
[]
[]
split_0_train_1414
split_0_train_1414
[ { "id": "split_0_train_1414_passage", "type": "progene_text", "text": [ "PURPOSE :" ], "offsets": [ [ 0, 9 ] ] } ]
[]
[]
[]
[]
split_0_train_1415
split_0_train_1415
[ { "id": "split_0_train_1415_passage", "type": "progene_text", "text": [ "To evaluate fibronectin , vitronectin , laminin , and collagen type IV adhesion to poly ( methyl methacrylate ) ( PMMA ) , silicone , hydrophobic soft acrylate , and hydrogel intraocular lenses ( IOLs ) in pseudophakic human autopsy eyes ." ], "offsets": [ [ 0, 239 ] ] } ]
[ { "id": "split_0_train_2097_entity", "type": "progene_text", "text": [ "fibronectin" ], "offsets": [ [ 12, 23 ] ], "normalized": [] }, { "id": "split_0_train_2098_entity", "type": "progene_text", "text": [ "vitronectin" ], "offsets": [ [ 26, 37 ] ], "normalized": [] }, { "id": "split_0_train_2099_entity", "type": "progene_text", "text": [ "laminin" ], "offsets": [ [ 40, 47 ] ], "normalized": [] }, { "id": "split_0_train_2100_entity", "type": "progene_text", "text": [ "collagen type IV" ], "offsets": [ [ 54, 70 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1416
split_0_train_1416
[ { "id": "split_0_train_1416_passage", "type": "progene_text", "text": [ "SETTING :" ], "offsets": [ [ 0, 9 ] ] } ]
[]
[]
[]
[]
split_0_train_1417
split_0_train_1417
[ { "id": "split_0_train_1417_passage", "type": "progene_text", "text": [ "Center for Research on Ocular Therapeutics and Biodevices , Storm Eye Institute , Medical University of South Carolina , Charleston , South Carolina , USA ." ], "offsets": [ [ 0, 156 ] ] } ]
[]
[]
[]
[]
split_0_train_1418
split_0_train_1418
[ { "id": "split_0_train_1418_passage", "type": "progene_text", "text": [ "METHODS :" ], "offsets": [ [ 0, 9 ] ] } ]
[]
[]
[]
[]
split_0_train_1419
split_0_train_1419
[ { "id": "split_0_train_1419_passage", "type": "progene_text", "text": [ "Thirty-eight autopsy eyes containing PMMA , silicone , hydrophobic acrylate , or hydrogel IOLs were assessed ." ], "offsets": [ [ 0, 110 ] ] } ]
[]
[]
[]
[]
split_0_train_1420
split_0_train_1420
[ { "id": "split_0_train_1420_passage", "type": "progene_text", "text": [ "Histological sections were prepared from each eye , and immunohistochemical analyses were performed for fibronectin , vitronectin , laminin , and collagen type IV ." ], "offsets": [ [ 0, 164 ] ] } ]
[ { "id": "split_0_train_2101_entity", "type": "progene_text", "text": [ "fibronectin" ], "offsets": [ [ 104, 115 ] ], "normalized": [] }, { "id": "split_0_train_2102_entity", "type": "progene_text", "text": [ "vitronectin" ], "offsets": [ [ 118, 129 ] ], "normalized": [] }, { "id": "split_0_train_2103_entity", "type": "progene_text", "text": [ "laminin" ], "offsets": [ [ 132, 139 ] ], "normalized": [] }, { "id": "split_0_train_2104_entity", "type": "progene_text", "text": [ "collagen type IV" ], "offsets": [ [ 146, 162 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1421
split_0_train_1421
[ { "id": "split_0_train_1421_passage", "type": "progene_text", "text": [ "One hundred fifty-two specimens were analyzed ." ], "offsets": [ [ 0, 47 ] ] } ]
[]
[]
[]
[]
split_0_train_1422
split_0_train_1422
[ { "id": "split_0_train_1422_passage", "type": "progene_text", "text": [ "RESULTS :" ], "offsets": [ [ 0, 9 ] ] } ]
[]
[]
[]
[]
split_0_train_1423
split_0_train_1423
[ { "id": "split_0_train_1423_passage", "type": "progene_text", "text": [ "A sandwich - like structure ( anterior or posterior capsule / fibronectin / 1 cell layer / fibronectin / IOL surface ) was seen in 12 of 14 autopsy eyes with soft acrylate IOLs , 3 of 10 with a PMMA IOL ( P = .0094 ) , 1 of 10 with a silicone IOL ( P = .0022 ) , and 0 of 4 with a hydrogel IOL ( P = . 0041 ) ." ], "offsets": [ [ 0, 310 ] ] } ]
[ { "id": "split_0_train_2105_entity", "type": "progene_text", "text": [ "fibronectin" ], "offsets": [ [ 62, 73 ] ], "normalized": [] }, { "id": "split_0_train_2106_entity", "type": "progene_text", "text": [ "fibronectin" ], "offsets": [ [ 91, 102 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1424
split_0_train_1424
[ { "id": "split_0_train_1424_passage", "type": "progene_text", "text": [ "The thicker fibrocellular tissue on the inner surface of the anterior or posterior capsule that was in contact with silicone IOLs was lined with collagen type IV ." ], "offsets": [ [ 0, 163 ] ] } ]
[ { "id": "split_0_train_2107_entity", "type": "progene_text", "text": [ "collagen type IV" ], "offsets": [ [ 145, 161 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1425
split_0_train_1425
[ { "id": "split_0_train_1425_passage", "type": "progene_text", "text": [ "Vitronectin and laminin were not found at the fibrocellular tissue - IOL interface in any specimen ." ], "offsets": [ [ 0, 100 ] ] } ]
[ { "id": "split_0_train_2108_entity", "type": "progene_text", "text": [ "Vitronectin" ], "offsets": [ [ 0, 11 ] ], "normalized": [] }, { "id": "split_0_train_2109_entity", "type": "progene_text", "text": [ "laminin" ], "offsets": [ [ 16, 23 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1426
split_0_train_1426
[ { "id": "split_0_train_1426_passage", "type": "progene_text", "text": [ "CONCLUSIONS :" ], "offsets": [ [ 0, 13 ] ] } ]
[]
[]
[]
[]
split_0_train_1427
split_0_train_1427
[ { "id": "split_0_train_1427_passage", "type": "progene_text", "text": [ "This study seems to confirm the sandwich theory of posterior capsule opacification in eyes with an IOL and suggests that fibronectin may be the major extracellular protein responsible for the attachment of hydrophobic soft acrylate ( AcrySof(R) ) IOLs to the capsular bag ." ], "offsets": [ [ 0, 273 ] ] } ]
[ { "id": "split_0_train_2110_entity", "type": "progene_text", "text": [ "fibronectin" ], "offsets": [ [ 121, 132 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1428
split_0_train_1428
[ { "id": "split_0_train_1428_passage", "type": "progene_text", "text": [ "This may represent a true bioactive bond between the IOL and lens epithelial cells or between the IOL and the capsular bag and may be one reason the PCO and neodymium : YAG capsulotomy rates are lower in eyes with a soft acrylate IOL ." ], "offsets": [ [ 0, 235 ] ] } ]
[]
[]
[]
[]
split_0_train_1429
split_0_train_1429
[ { "id": "split_0_train_1429_passage", "type": "progene_text", "text": [ "Nerve control of type 2A MHC isoform expression in regenerating slow skeletal muscle ." ], "offsets": [ [ 0, 86 ] ] } ]
[ { "id": "split_0_train_2111_entity", "type": "progene_text", "text": [ "type 2A MHC" ], "offsets": [ [ 17, 28 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1430
split_0_train_1430
[ { "id": "split_0_train_1430_passage", "type": "progene_text", "text": [ "Bupivacaine - induced regeneration was studied in rat soleus muscle under several conditions , with the focus on type 2A and type 1 myosin heavy chain ( MHC ) isoform expression ." ], "offsets": [ [ 0, 179 ] ] } ]
[ { "id": "split_0_train_2112_entity", "type": "progene_text", "text": [ "type 2A and type 1 myosin heavy chain" ], "offsets": [ [ 113, 150 ] ], "normalized": [] }, { "id": "split_0_train_2113_entity", "type": "progene_text", "text": [ "MHC" ], "offsets": [ [ 153, 156 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1431
split_0_train_1431
[ { "id": "split_0_train_1431_passage", "type": "progene_text", "text": [ "In denervated muscles , type 1 was absent , whereas type 2A was widely expressed , a pattern of regeneration which appeared to be independent of fibrillation activity of the muscle ." ], "offsets": [ [ 0, 182 ] ] } ]
[ { "id": "split_0_train_2114_entity", "type": "progene_text", "text": [ "2A" ], "offsets": [ [ 57, 59 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1432
split_0_train_1432
[ { "id": "split_0_train_1432_passage", "type": "progene_text", "text": [ "Both type 1 and type 2A isoforms were absent in muscles regenerated during tetrodotoxin ( TTX ) block of impulse conduction in the sciatic nerve , but type 2A was still present when the TTX block was associated with the vinblastine block of axoplasmic flow ; vinblastine block alone caused the coexpression of type 1 and type 2A isoforms in the majority of fibers ." ], "offsets": [ [ 0, 365 ] ] } ]
[ { "id": "split_0_train_2115_entity", "type": "progene_text", "text": [ "2A" ], "offsets": [ [ 21, 23 ] ], "normalized": [] }, { "id": "split_0_train_2116_entity", "type": "progene_text", "text": [ "2A" ], "offsets": [ [ 156, 158 ] ], "normalized": [] }, { "id": "split_0_train_2117_entity", "type": "progene_text", "text": [ "2A" ], "offsets": [ [ 326, 328 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1433
split_0_train_1433
[ { "id": "split_0_train_1433_passage", "type": "progene_text", "text": [ "These results suggest that axoplasmic flow carries some chemical factor that inhibits 2A MHC isoform expression ." ], "offsets": [ [ 0, 113 ] ] } ]
[ { "id": "split_0_train_2118_entity", "type": "progene_text", "text": [ "2A MHC" ], "offsets": [ [ 86, 92 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1434
split_0_train_1434
[ { "id": "split_0_train_1434_passage", "type": "progene_text", "text": [ "The results are also of clinical interest , contributing to the understanding of factors controlling muscle differentiation and adaptation ." ], "offsets": [ [ 0, 140 ] ] } ]
[]
[]
[]
[]
split_0_train_1435
split_0_train_1435
[ { "id": "split_0_train_1435_passage", "type": "progene_text", "text": [ "Antigen - specific mediated suppression of beta cell autoimmunity by plasmid DNA vaccination ." ], "offsets": [ [ 0, 94 ] ] } ]
[]
[]
[]
[]
split_0_train_1436
split_0_train_1436
[ { "id": "split_0_train_1436_passage", "type": "progene_text", "text": [ "In this study , we have investigated the use of plasmid DNA ( pDNA ) vaccination to elicit Th2 effector cell function in an Ag - specific manner and in turn prevent insulin - dependent diabetes mellitus ( IDDM ) in nonobese diabetic ( NOD ) mice ." ], "offsets": [ [ 0, 247 ] ] } ]
[ { "id": "split_0_train_2119_entity", "type": "progene_text", "text": [ "insulin" ], "offsets": [ [ 165, 172 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1437
split_0_train_1437
[ { "id": "split_0_train_1437_passage", "type": "progene_text", "text": [ "pDNA recombinants were engineered encoding a secreted fusion protein consisting of a fragment of glutamic acid decarboxylase 65 ( GAD65 ) linked to IgGFc , and IL-4 ." ], "offsets": [ [ 0, 166 ] ] } ]
[ { "id": "split_0_train_2120_entity", "type": "progene_text", "text": [ "glutamic acid decarboxylase 65" ], "offsets": [ [ 97, 127 ] ], "normalized": [] }, { "id": "split_0_train_2121_entity", "type": "progene_text", "text": [ "GAD65" ], "offsets": [ [ 130, 135 ] ], "normalized": [] }, { "id": "split_0_train_2122_entity", "type": "progene_text", "text": [ "IgGFc" ], "offsets": [ [ 148, 153 ] ], "normalized": [] }, { "id": "split_0_train_2123_entity", "type": "progene_text", "text": [ "IL-4" ], "offsets": [ [ 160, 164 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1438
split_0_train_1438
[ { "id": "split_0_train_1438_passage", "type": "progene_text", "text": [ "Intramuscular injection of pDNA encoding GAD65 - IgGFc and IL-4 effectively prevented diabetes in NOD mice treated at early or late preclinical stages of IDDM ." ], "offsets": [ [ 0, 160 ] ] } ]
[ { "id": "split_0_train_2124_entity", "type": "progene_text", "text": [ "GAD65" ], "offsets": [ [ 41, 46 ] ], "normalized": [] }, { "id": "split_0_train_2125_entity", "type": "progene_text", "text": [ "IgGFc" ], "offsets": [ [ 49, 54 ] ], "normalized": [] }, { "id": "split_0_train_2126_entity", "type": "progene_text", "text": [ "IL-4" ], "offsets": [ [ 59, 63 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1439
split_0_train_1439
[ { "id": "split_0_train_1439_passage", "type": "progene_text", "text": [ "This protection was GAD65 - specific since NOD mice immunized with pDNA encoding hen egg lysozyme - IgGFc and IL-4 continued to develop diabetes ." ], "offsets": [ [ 0, 146 ] ] } ]
[ { "id": "split_0_train_2127_entity", "type": "progene_text", "text": [ "GAD65" ], "offsets": [ [ 20, 25 ] ], "normalized": [] }, { "id": "split_0_train_2128_entity", "type": "progene_text", "text": [ "lysozyme" ], "offsets": [ [ 89, 97 ] ], "normalized": [] }, { "id": "split_0_train_2129_entity", "type": "progene_text", "text": [ "IgGFc" ], "offsets": [ [ 100, 105 ] ], "normalized": [] }, { "id": "split_0_train_2130_entity", "type": "progene_text", "text": [ "IL-4" ], "offsets": [ [ 110, 114 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1440
split_0_train_1440
[ { "id": "split_0_train_1440_passage", "type": "progene_text", "text": [ "Furthermore , disease prevention correlated with suppression of insulitis and induction of GAD65 - specific regulatory Th2 cells ." ], "offsets": [ [ 0, 130 ] ] } ]
[ { "id": "split_0_train_2131_entity", "type": "progene_text", "text": [ "GAD65" ], "offsets": [ [ 91, 96 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1441
split_0_train_1441
[ { "id": "split_0_train_1441_passage", "type": "progene_text", "text": [ "Importantly , GAD65 - specific immune deviation was dependent on pDNA - encoded IL-4 ." ], "offsets": [ [ 0, 86 ] ] } ]
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[]
[]
[]
split_0_train_1442
split_0_train_1442
[ { "id": "split_0_train_1442_passage", "type": "progene_text", "text": [ "In fact , GAD65 - specific Th1 cell reactivity was significantly enhanced in animals immunized with pDNA encoding only GAD65 - IgGFc ." ], "offsets": [ [ 0, 134 ] ] } ]
[ { "id": "split_0_train_2134_entity", "type": "progene_text", "text": [ "GAD65" ], "offsets": [ [ 10, 15 ] ], "normalized": [] }, { "id": "split_0_train_2135_entity", "type": "progene_text", "text": [ "GAD65" ], "offsets": [ [ 119, 124 ] ], "normalized": [] }, { "id": "split_0_train_2136_entity", "type": "progene_text", "text": [ "IgGFc" ], "offsets": [ [ 127, 132 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1443
split_0_train_1443
[ { "id": "split_0_train_1443_passage", "type": "progene_text", "text": [ "Finally , NOD . IL4 ( null ) mice treated with pDNA encoding GAD65 - IgGFc and IL-4 continued to develop diabetes , indicating that endogenous IL-4 was also required for disease prevention ." ], "offsets": [ [ 0, 190 ] ] } ]
[ { "id": "split_0_train_2137_entity", "type": "progene_text", "text": [ "IL4" ], "offsets": [ [ 16, 19 ] ], "normalized": [] }, { "id": "split_0_train_2138_entity", "type": "progene_text", "text": [ "GAD65" ], "offsets": [ [ 61, 66 ] ], "normalized": [] }, { "id": "split_0_train_2139_entity", "type": "progene_text", "text": [ "IgGFc" ], "offsets": [ [ 69, 74 ] ], "normalized": [] }, { "id": "split_0_train_2140_entity", "type": "progene_text", "text": [ "IL-4" ], "offsets": [ [ 79, 83 ] ], "normalized": [] }, { "id": "split_0_train_2141_entity", "type": "progene_text", "text": [ "IL-4" ], "offsets": [ [ 143, 147 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1444
split_0_train_1444
[ { "id": "split_0_train_1444_passage", "type": "progene_text", "text": [ "These results demonstrate that pDNA vaccination is an effective strategy to elicit beta cell - specific Th2 regulatory cell function for the purpose of preventing IDDM even at a late stage of disease development ." ], "offsets": [ [ 0, 213 ] ] } ]
[]
[]
[]
[]
split_0_train_1445
split_0_train_1445
[ { "id": "split_0_train_1445_passage", "type": "progene_text", "text": [ "Interleukin-6 and transforming growth factor - beta 1 control expression of cathepsins B and L in human lung epithelial cells ." ], "offsets": [ [ 0, 127 ] ] } ]
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[]
[]
[]
split_0_train_1446
split_0_train_1446
[ { "id": "split_0_train_1446_passage", "type": "progene_text", "text": [ "Cathepsins B and L are commonly expressed cysteine proteinases that play a major role in lysosomal bulk proteolysis , protein processing , matrix degradation , and tissue remodeling ." ], "offsets": [ [ 0, 183 ] ] } ]
[ { "id": "split_0_train_2145_entity", "type": "progene_text", "text": [ "Cathepsins B and L" ], "offsets": [ [ 0, 18 ] ], "normalized": [] }, { "id": "split_0_train_2146_entity", "type": "progene_text", "text": [ "cysteine proteinases" ], "offsets": [ [ 42, 62 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1447
split_0_train_1447
[ { "id": "split_0_train_1447_passage", "type": "progene_text", "text": [ "Cathepsins are also implicated in tumor progression and metastasis , tissue injury , and inflammation ." ], "offsets": [ [ 0, 103 ] ] } ]
[ { "id": "split_0_train_2147_entity", "type": "progene_text", "text": [ "Cathepsins" ], "offsets": [ [ 0, 10 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1448
split_0_train_1448
[ { "id": "split_0_train_1448_passage", "type": "progene_text", "text": [ "Cells at sites of inflammation often show upregulation and secretion of cathepsins ." ], "offsets": [ [ 0, 84 ] ] } ]
[ { "id": "split_0_train_2148_entity", "type": "progene_text", "text": [ "cathepsins" ], "offsets": [ [ 72, 82 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1449
split_0_train_1449
[ { "id": "split_0_train_1449_passage", "type": "progene_text", "text": [ "The regulation of cathepsin expression by inflammatory mediators is not well understood ." ], "offsets": [ [ 0, 89 ] ] } ]
[ { "id": "split_0_train_2149_entity", "type": "progene_text", "text": [ "cathepsin" ], "offsets": [ [ 18, 27 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1450
split_0_train_1450
[ { "id": "split_0_train_1450_passage", "type": "progene_text", "text": [ "The aims of this study were to investigate the effect of the cytokines interleukin-1 beta ( IL-1 beta ) , IL-6 , IL-10 , transforming growth factor - beta 1 ( TGF-beta 1 ) , and hepatocyte growth factor ( HGF ) on expression of cathepsin B and cathepsin L mRNA ( quantitative RT - PCR ) , on protein expression ( ELISA , Western blot ) , and also on enzymatic activity of cathepsins B and L ." ], "offsets": [ [ 0, 392 ] ] } ]
[ { "id": "split_0_train_2150_entity", "type": "progene_text", "text": [ "cytokines" ], "offsets": [ [ 61, 70 ] ], "normalized": [] }, { "id": "split_0_train_2151_entity", "type": "progene_text", "text": [ "interleukin-1 beta" ], "offsets": [ [ 71, 89 ] ], "normalized": [] }, { "id": "split_0_train_2152_entity", "type": "progene_text", "text": [ "IL-1 beta" ], "offsets": [ [ 92, 101 ] ], "normalized": [] }, { "id": "split_0_train_2153_entity", "type": "progene_text", "text": [ "IL-6" ], "offsets": [ [ 106, 110 ] ], "normalized": [] }, { "id": "split_0_train_2154_entity", "type": "progene_text", "text": [ "IL-10" ], "offsets": [ [ 113, 118 ] ], "normalized": [] }, { "id": "split_0_train_2155_entity", "type": "progene_text", "text": [ "transforming growth factor - beta 1" ], "offsets": [ [ 121, 156 ] ], "normalized": [] }, { "id": "split_0_train_2156_entity", "type": "progene_text", "text": [ "TGF-beta 1" ], "offsets": [ [ 159, 169 ] ], "normalized": [] }, { "id": "split_0_train_2157_entity", "type": "progene_text", "text": [ "hepatocyte growth factor" ], "offsets": [ [ 178, 202 ] ], "normalized": [] }, { "id": "split_0_train_2158_entity", "type": "progene_text", "text": [ "HGF" ], "offsets": [ [ 205, 208 ] ], "normalized": [] }, { "id": "split_0_train_2159_entity", "type": "progene_text", "text": [ "cathepsin B" ], "offsets": [ [ 228, 239 ] ], "normalized": [] }, { "id": "split_0_train_2160_entity", "type": "progene_text", "text": [ "cathepsin L" ], "offsets": [ [ 244, 255 ] ], "normalized": [] }, { "id": "split_0_train_2161_entity", "type": "progene_text", "text": [ "cathepsins B and L" ], "offsets": [ [ 372, 390 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1451
split_0_train_1451
[ { "id": "split_0_train_1451_passage", "type": "progene_text", "text": [ "Investigations were performed using the human lung epithelial cell line A-549 ." ], "offsets": [ [ 0, 79 ] ] } ]
[]
[]
[]
[]
split_0_train_1452
split_0_train_1452
[ { "id": "split_0_train_1452_passage", "type": "progene_text", "text": [ "IL-6 was found to induce a concentration - dependent increase in mRNA expression , protein concentration , and enzymatic activity of cathepsin L ." ], "offsets": [ [ 0, 146 ] ] } ]
[ { "id": "split_0_train_2162_entity", "type": "progene_text", "text": [ "IL-6" ], "offsets": [ [ 0, 4 ] ], "normalized": [] }, { "id": "split_0_train_2163_entity", "type": "progene_text", "text": [ "cathepsin L" ], "offsets": [ [ 133, 144 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1453
split_0_train_1453
[ { "id": "split_0_train_1453_passage", "type": "progene_text", "text": [ "Cathepsin B mRNA and protein expression were not affected by IL-6 ." ], "offsets": [ [ 0, 67 ] ] } ]
[ { "id": "split_0_train_2164_entity", "type": "progene_text", "text": [ "Cathepsin B" ], "offsets": [ [ 0, 11 ] ], "normalized": [] }, { "id": "split_0_train_2165_entity", "type": "progene_text", "text": [ "IL-6" ], "offsets": [ [ 61, 65 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1454
split_0_train_1454
[ { "id": "split_0_train_1454_passage", "type": "progene_text", "text": [ "In contrast , TGF-beta 1 decreased the amount of cathepsin L mRNA and cathepsin B mRNA ." ], "offsets": [ [ 0, 88 ] ] } ]
[ { "id": "split_0_train_2166_entity", "type": "progene_text", "text": [ "TGF-beta 1" ], "offsets": [ [ 14, 24 ] ], "normalized": [] }, { "id": "split_0_train_2167_entity", "type": "progene_text", "text": [ "cathepsin L" ], "offsets": [ [ 49, 60 ] ], "normalized": [] }, { "id": "split_0_train_2168_entity", "type": "progene_text", "text": [ "cathepsin B" ], "offsets": [ [ 70, 81 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1455
split_0_train_1455
[ { "id": "split_0_train_1455_passage", "type": "progene_text", "text": [ "At protein level , it was shown that TGF-beta 1 clearly reduced the concentration of cathepsin L but not cathepsin B ." ], "offsets": [ [ 0, 118 ] ] } ]
[ { "id": "split_0_train_2169_entity", "type": "progene_text", "text": [ "TGF-beta 1" ], "offsets": [ [ 37, 47 ] ], "normalized": [] }, { "id": "split_0_train_2170_entity", "type": "progene_text", "text": [ "cathepsin L" ], "offsets": [ [ 85, 96 ] ], "normalized": [] }, { "id": "split_0_train_2171_entity", "type": "progene_text", "text": [ "cathepsin B" ], "offsets": [ [ 105, 116 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1456
split_0_train_1456
[ { "id": "split_0_train_1456_passage", "type": "progene_text", "text": [ "The cytokines IL-1 beta , IL-10 , and HGF were found to exert no effect on cathepsin B and L expression ." ], "offsets": [ [ 0, 105 ] ] } ]
[ { "id": "split_0_train_2172_entity", "type": "progene_text", "text": [ "cytokines" ], "offsets": [ [ 4, 13 ] ], "normalized": [] }, { "id": "split_0_train_2173_entity", "type": "progene_text", "text": [ "IL-1 beta" ], "offsets": [ [ 14, 23 ] ], "normalized": [] }, { "id": "split_0_train_2174_entity", "type": "progene_text", "text": [ "IL-10" ], "offsets": [ [ 26, 31 ] ], "normalized": [] }, { "id": "split_0_train_2175_entity", "type": "progene_text", "text": [ "HGF" ], "offsets": [ [ 38, 41 ] ], "normalized": [] }, { "id": "split_0_train_2176_entity", "type": "progene_text", "text": [ "cathepsin B and L" ], "offsets": [ [ 75, 92 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1457
split_0_train_1457
[ { "id": "split_0_train_1457_passage", "type": "progene_text", "text": [ "In conclusion , these results are the first to show that IL-6 and TGF-beta 1 have opposite effects on the regulation of expression of cathepsins B and L in A-549 human lung epithelial cells ." ], "offsets": [ [ 0, 191 ] ] } ]
[ { "id": "split_0_train_2177_entity", "type": "progene_text", "text": [ "IL-6" ], "offsets": [ [ 57, 61 ] ], "normalized": [] }, { "id": "split_0_train_2178_entity", "type": "progene_text", "text": [ "TGF-beta 1" ], "offsets": [ [ 66, 76 ] ], "normalized": [] }, { "id": "split_0_train_2179_entity", "type": "progene_text", "text": [ "cathepsins B and L" ], "offsets": [ [ 134, 152 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1458
split_0_train_1458
[ { "id": "split_0_train_1458_passage", "type": "progene_text", "text": [ "The proinflammatory cytokine IL-6 induced an upregulation of cathepsin L , whereas TGF-beta 1 suppressed cathepsin B and L expression ." ], "offsets": [ [ 0, 135 ] ] } ]
[ { "id": "split_0_train_2180_entity", "type": "progene_text", "text": [ "cytokine" ], "offsets": [ [ 20, 28 ] ], "normalized": [] }, { "id": "split_0_train_2181_entity", "type": "progene_text", "text": [ "IL-6" ], "offsets": [ [ 29, 33 ] ], "normalized": [] }, { "id": "split_0_train_2182_entity", "type": "progene_text", "text": [ "cathepsin L" ], "offsets": [ [ 61, 72 ] ], "normalized": [] }, { "id": "split_0_train_2183_entity", "type": "progene_text", "text": [ "TGF-beta 1" ], "offsets": [ [ 83, 93 ] ], "normalized": [] }, { "id": "split_0_train_2184_entity", "type": "progene_text", "text": [ "cathepsin B and L" ], "offsets": [ [ 105, 122 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1459
split_0_train_1459
[ { "id": "split_0_train_1459_passage", "type": "progene_text", "text": [ "Further studies are needed to clarify the mechanism that affects cathepsin B and L expression ." ], "offsets": [ [ 0, 95 ] ] } ]
[ { "id": "split_0_train_2185_entity", "type": "progene_text", "text": [ "cathepsin B and L" ], "offsets": [ [ 65, 82 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1460
split_0_train_1460
[ { "id": "split_0_train_1460_passage", "type": "progene_text", "text": [ "Ku autoantigen ( DNA helicase ) is required for interleukins - 13 / - 4 - induction of 15-lipoxygenase-1 gene expression in human epithelial cells ." ], "offsets": [ [ 0, 148 ] ] } ]
[ { "id": "split_0_train_2186_entity", "type": "progene_text", "text": [ "Ku autoantigen" ], "offsets": [ [ 0, 14 ] ], "normalized": [] }, { "id": "split_0_train_2187_entity", "type": "progene_text", "text": [ "DNA helicase" ], "offsets": [ [ 17, 29 ] ], "normalized": [] }, { "id": "split_0_train_2188_entity", "type": "progene_text", "text": [ "interleukins - 13 / - 4" ], "offsets": [ [ 48, 71 ] ], "normalized": [] }, { "id": "split_0_train_2189_entity", "type": "progene_text", "text": [ "15-lipoxygenase-1" ], "offsets": [ [ 87, 104 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1461
split_0_train_1461
[ { "id": "split_0_train_1461_passage", "type": "progene_text", "text": [ "As reported previously in human monocytes , a human lung epithelial cell line , A549 , showed de novo induction of 15-Lipoxygenase-1 ( 15-LO-1 ) in response to interleukins - 13 ( IL-13 ) and - 4 ( IL-4 ) ." ], "offsets": [ [ 0, 206 ] ] } ]
[ { "id": "split_0_train_2190_entity", "type": "progene_text", "text": [ "15-Lipoxygenase-1" ], "offsets": [ [ 115, 132 ] ], "normalized": [] }, { "id": "split_0_train_2191_entity", "type": "progene_text", "text": [ "15-LO-1" ], "offsets": [ [ 135, 142 ] ], "normalized": [] }, { "id": "split_0_train_2192_entity", "type": "progene_text", "text": [ "interleukins - 13 ( IL-13 ) and - 4" ], "offsets": [ [ 160, 195 ] ], "normalized": [] }, { "id": "split_0_train_2193_entity", "type": "progene_text", "text": [ "IL-4" ], "offsets": [ [ 198, 202 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1462
split_0_train_1462
[ { "id": "split_0_train_1462_passage", "type": "progene_text", "text": [ "In this cell line , 15-LO-1 expression , by RT - PCR and western blotting , was observed following 6 and 24 h of exposure to human IL-13 ( ED50 5 ng / ml ) and IL-4 ( ED50 0.2 ng / ml ) ." ], "offsets": [ [ 0, 187 ] ] } ]
[ { "id": "split_0_train_2194_entity", "type": "progene_text", "text": [ "15-LO-1" ], "offsets": [ [ 20, 27 ] ], "normalized": [] }, { "id": "split_0_train_2195_entity", "type": "progene_text", "text": [ "IL-13" ], "offsets": [ [ 131, 136 ] ], "normalized": [] }, { "id": "split_0_train_2196_entity", "type": "progene_text", "text": [ "IL-4" ], "offsets": [ [ 160, 164 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1463
split_0_train_1463
[ { "id": "split_0_train_1463_passage", "type": "progene_text", "text": [ "We have previously shown that no cis - acting regulatory elements exist within the 15-LO-1 promoter region ." ], "offsets": [ [ 0, 108 ] ] } ]
[ { "id": "split_0_train_2197_entity", "type": "progene_text", "text": [ "15-LO-1" ], "offsets": [ [ 83, 90 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1464
split_0_train_1464
[ { "id": "split_0_train_1464_passage", "type": "progene_text", "text": [ "To define IL-13 and IL-4 responsive trans - acting elements , we identified a region ( DP2 : - 353 to - 304 bp site ) within the 15-LO-1 promoter ( by footprinting experiments ) to which IL-13 - responsive elements ( or factors ) bind specifically ( Kelavkar et al , 1998 , Mol Biol Rep 25 , 173 - 182 ) ." ], "offsets": [ [ 0, 305 ] ] } ]
[ { "id": "split_0_train_2198_entity", "type": "progene_text", "text": [ "IL-13" ], "offsets": [ [ 10, 15 ] ], "normalized": [] }, { "id": "split_0_train_2199_entity", "type": "progene_text", "text": [ "IL-4" ], "offsets": [ [ 20, 24 ] ], "normalized": [] }, { "id": "split_0_train_2200_entity", "type": "progene_text", "text": [ "15-LO-1" ], "offsets": [ [ 129, 136 ] ], "normalized": [] }, { "id": "split_0_train_2201_entity", "type": "progene_text", "text": [ "IL-13" ], "offsets": [ [ 187, 192 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1465
split_0_train_1465
[ { "id": "split_0_train_1465_passage", "type": "progene_text", "text": [ "To further delineate this region , we constructed ( by site - directed mutagenesis ) several deletion mutants in the ' LOPB5 ' region containing the 29 bp within the - 353 to - 304 bp of the DP2 core element ." ], "offsets": [ [ 0, 209 ] ] } ]
[]
[]
[]
[]
split_0_train_1466
split_0_train_1466
[ { "id": "split_0_train_1466_passage", "type": "progene_text", "text": [ "These were : DP3 ( site totally deleted ) , DP4 ( 5 bp deleted at the center of the site ) , DP5 ( 8 bp at the 5'-end of the site ) and DP6 ( 13 bp at the 3' - end of the site ) ." ], "offsets": [ [ 0, 179 ] ] } ]
[]
[]
[]
[]
split_0_train_1467
split_0_train_1467
[ { "id": "split_0_train_1467_passage", "type": "progene_text", "text": [ "Cotransfection of these deletion constructs ( driving luciferase reporter genes ) was associated with 90 % ( DP4 , DP5 and DP6 ) or 100 % ( DP3 ) abrogation of promoter activity at 24 h ." ], "offsets": [ [ 0, 187 ] ] } ]
[ { "id": "split_0_train_2202_entity", "type": "progene_text", "text": [ "luciferase" ], "offsets": [ [ 54, 64 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1468
split_0_train_1468
[ { "id": "split_0_train_1468_passage", "type": "progene_text", "text": [ "Purification of nuclear protein extracts from IL-13 and IL-4 - stimulated A549 cells , using a DP2 core containing affinity column , identified a 150 kDa protein under non - denaturing conditions , and two , 70 and 85 kDa proteins under denaturing conditions ." ], "offsets": [ [ 0, 260 ] ] } ]
[ { "id": "split_0_train_2203_entity", "type": "progene_text", "text": [ "IL-13" ], "offsets": [ [ 46, 51 ] ], "normalized": [] }, { "id": "split_0_train_2204_entity", "type": "progene_text", "text": [ "IL-4" ], "offsets": [ [ 56, 60 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1469
split_0_train_1469
[ { "id": "split_0_train_1469_passage", "type": "progene_text", "text": [ "These were not detectable by Coomassie blue staining in control nuclear protein extracts ." ], "offsets": [ [ 0, 90 ] ] } ]
[]
[]
[]
[]
split_0_train_1470
split_0_train_1470
[ { "id": "split_0_train_1470_passage", "type": "progene_text", "text": [ "Matrix assisted laser desorption ionization mass spectrometry ( MALDI - MS ) of the tryptic digests of these proteins , identified one as the 86 kDA Lupus KU autoantigen protein P86 and the second as the 70 kDa Lupus KU autoantigen protein P70 ." ], "offsets": [ [ 0, 245 ] ] } ]
[ { "id": "split_0_train_2205_entity", "type": "progene_text", "text": [ "86 kDA Lupus KU autoantigen protein P86" ], "offsets": [ [ 142, 181 ] ], "normalized": [] }, { "id": "split_0_train_2206_entity", "type": "progene_text", "text": [ "70 kDa Lupus KU autoantigen protein P70" ], "offsets": [ [ 204, 243 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1471
split_0_train_1471
[ { "id": "split_0_train_1471_passage", "type": "progene_text", "text": [ "Gel shift and supershift experiments using monoclonal antibodies toward Ku antigen and its individual subunits , and utilizing DP2 and other mutant oligonucleotides with purified nuclear protein extracts from control and cytokine - treated A549 cells , confirmed our findings ." ], "offsets": [ [ 0, 277 ] ] } ]
[ { "id": "split_0_train_2207_entity", "type": "progene_text", "text": [ "Ku antigen" ], "offsets": [ [ 72, 82 ] ], "normalized": [] }, { "id": "split_0_train_2208_entity", "type": "progene_text", "text": [ "cytokine" ], "offsets": [ [ 221, 229 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1472
split_0_train_1472
[ { "id": "split_0_train_1472_passage", "type": "progene_text", "text": [ "Furthermore , electroporation of neutralizing anti - Ku70 , Ku 80 and Ku70 / 80 antibodies into A549 cells totally suppressed IL-13 and IL-4 - stimulated 15-LO-1 induction in these cells ." ], "offsets": [ [ 0, 188 ] ] } ]
[ { "id": "split_0_train_2209_entity", "type": "progene_text", "text": [ "Ku70" ], "offsets": [ [ 53, 57 ] ], "normalized": [] }, { "id": "split_0_train_2210_entity", "type": "progene_text", "text": [ "Ku 80" ], "offsets": [ [ 60, 65 ] ], "normalized": [] }, { "id": "split_0_train_2211_entity", "type": "progene_text", "text": [ "Ku70 / 80" ], "offsets": [ [ 70, 79 ] ], "normalized": [] }, { "id": "split_0_train_2212_entity", "type": "progene_text", "text": [ "IL-13" ], "offsets": [ [ 126, 131 ] ], "normalized": [] }, { "id": "split_0_train_2213_entity", "type": "progene_text", "text": [ "IL-4" ], "offsets": [ [ 136, 140 ] ], "normalized": [] }, { "id": "split_0_train_2214_entity", "type": "progene_text", "text": [ "15-LO-1" ], "offsets": [ [ 154, 161 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1473
split_0_train_1473
[ { "id": "split_0_train_1473_passage", "type": "progene_text", "text": [ "Further , immunoprecipitation experiments data suggests that IL-4 and IL-13 activate Ku antigens and 15-LO-1 expression through distinct signaling events ." ], "offsets": [ [ 0, 155 ] ] } ]
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[]
[]
[]
split_0_train_1474
split_0_train_1474
[ { "id": "split_0_train_1474_passage", "type": "progene_text", "text": [ "In summary , in A549 cells , Ku antigen is induced in response to the cytokines , IL-13 and - 4 , and a 29 bp region within the - 353 to - 304 bp region of the 15-LO-1 promoter is required for its binding and subsequent induction of 15-LO-1 gene expression ." ], "offsets": [ [ 0, 258 ] ] } ]
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[]
[]
[]
split_0_train_1475
split_0_train_1475
[ { "id": "split_0_train_1475_passage", "type": "progene_text", "text": [ "The findings may provide an important link between the established dysregulated function of Ku antigen in auto - immune diseases , such as systemic lupus erythematosus and thyroiditis , and the increasingly recognized ' anti - inflammatory ' role of 15-LO-1 ." ], "offsets": [ [ 0, 259 ] ] } ]
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[]
[]
[]
split_0_train_1476
split_0_train_1476
[ { "id": "split_0_train_1476_passage", "type": "progene_text", "text": [ "Growth hormone receptor interaction with Jak proteins differs between tissues ." ], "offsets": [ [ 0, 79 ] ] } ]
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[]
[]
[]
split_0_train_1477
split_0_train_1477
[ { "id": "split_0_train_1477_passage", "type": "progene_text", "text": [ "Janus kinases ( Jak ) play an important role in the initial steps of cytokine receptor signaling ." ], "offsets": [ [ 0, 98 ] ] } ]
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[]
[]
[]
split_0_train_1478
split_0_train_1478
[ { "id": "split_0_train_1478_passage", "type": "progene_text", "text": [ "The specificity of the four members of the Jak family ( Jak1 , Jak2 , Jak3 , and Tyk2 ) for different cytokine receptors is not fully understood ." ], "offsets": [ [ 0, 146 ] ] } ]
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[]
[]
[]
split_0_train_1479
split_0_train_1479
[ { "id": "split_0_train_1479_passage", "type": "progene_text", "text": [ "Recent studies have indicated that a specific cytokine receptor can activate several Jak and that this may differ between tissues ." ], "offsets": [ [ 0, 131 ] ] } ]
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[]
[]
[]
split_0_train_1480
split_0_train_1480
[ { "id": "split_0_train_1480_passage", "type": "progene_text", "text": [ "The growth hormone receptor ( GHR ) is believed to interact predominantly with Jak2 , but studies on cell lines have shown that it may also induce phosphorylation of Jak1 and Jak3 ." ], "offsets": [ [ 0, 181 ] ] } ]
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[]
[]
[]
split_0_train_1481
split_0_train_1481
[ { "id": "split_0_train_1481_passage", "type": "progene_text", "text": [ "Little is known about the interaction between the GHR and Jak in tissues ." ], "offsets": [ [ 0, 74 ] ] } ]
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[]
[]
[]
split_0_train_1482
split_0_train_1482
[ { "id": "split_0_train_1482_passage", "type": "progene_text", "text": [ "Our aim , therefore , was to elucidate which Jak interact with the GHR in two target tissues for GH , liver and adipose tissue ." ], "offsets": [ [ 0, 128 ] ] } ]
[ { "id": "split_0_train_2245_entity", "type": "progene_text", "text": [ "Jak" ], "offsets": [ [ 45, 48 ] ], "normalized": [] }, { "id": "split_0_train_2246_entity", "type": "progene_text", "text": [ "GHR" ], "offsets": [ [ 67, 70 ] ], "normalized": [] }, { "id": "split_0_train_2247_entity", "type": "progene_text", "text": [ "GH" ], "offsets": [ [ 97, 99 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1483
split_0_train_1483
[ { "id": "split_0_train_1483_passage", "type": "progene_text", "text": [ "Western blot analysis showed that all four members of the Jak family are present in both rat liver and adipose tissue ." ], "offsets": [ [ 0, 119 ] ] } ]
[ { "id": "split_0_train_2248_entity", "type": "progene_text", "text": [ "Jak family" ], "offsets": [ [ 58, 68 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1484
split_0_train_1484
[ { "id": "split_0_train_1484_passage", "type": "progene_text", "text": [ "However , coprecipitation using an anti - GHR antibody revealed that only Jak1 and Jak2 were associated with the GHR in these tissues ." ], "offsets": [ [ 0, 135 ] ] } ]
[ { "id": "split_0_train_2249_entity", "type": "progene_text", "text": [ "GHR" ], "offsets": [ [ 42, 45 ] ], "normalized": [] }, { "id": "split_0_train_2250_entity", "type": "progene_text", "text": [ "Jak1" ], "offsets": [ [ 74, 78 ] ], "normalized": [] }, { "id": "split_0_train_2251_entity", "type": "progene_text", "text": [ "Jak2" ], "offsets": [ [ 83, 87 ] ], "normalized": [] }, { "id": "split_0_train_2252_entity", "type": "progene_text", "text": [ "GHR" ], "offsets": [ [ 113, 116 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1485
split_0_train_1485
[ { "id": "split_0_train_1485_passage", "type": "progene_text", "text": [ "The relative amount of Jak1 and Jak2 that coprecipitated with the GHR differed markedly between tissues ." ], "offsets": [ [ 0, 105 ] ] } ]
[ { "id": "split_0_train_2253_entity", "type": "progene_text", "text": [ "Jak1" ], "offsets": [ [ 23, 27 ] ], "normalized": [] }, { "id": "split_0_train_2254_entity", "type": "progene_text", "text": [ "Jak2" ], "offsets": [ [ 32, 36 ] ], "normalized": [] }, { "id": "split_0_train_2255_entity", "type": "progene_text", "text": [ "GHR" ], "offsets": [ [ 66, 69 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1486
split_0_train_1486
[ { "id": "split_0_train_1486_passage", "type": "progene_text", "text": [ "In the liver , Jak2 dominated , and only a small amount of Jak1 was detected ." ], "offsets": [ [ 0, 78 ] ] } ]
[ { "id": "split_0_train_2256_entity", "type": "progene_text", "text": [ "Jak2" ], "offsets": [ [ 15, 19 ] ], "normalized": [] }, { "id": "split_0_train_2257_entity", "type": "progene_text", "text": [ "Jak1" ], "offsets": [ [ 59, 63 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1487
split_0_train_1487
[ { "id": "split_0_train_1487_passage", "type": "progene_text", "text": [ "In adipose tissue , at least one third of the coprecipitated Jak was Jak1 ." ], "offsets": [ [ 0, 75 ] ] } ]
[ { "id": "split_0_train_2258_entity", "type": "progene_text", "text": [ "Jak" ], "offsets": [ [ 61, 64 ] ], "normalized": [] }, { "id": "split_0_train_2259_entity", "type": "progene_text", "text": [ "Jak1" ], "offsets": [ [ 69, 73 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1488
split_0_train_1488
[ { "id": "split_0_train_1488_passage", "type": "progene_text", "text": [ "This is the first study to show that both Jak1 and Jak2 are associated with the GHR in rat tissues ." ], "offsets": [ [ 0, 100 ] ] } ]
[ { "id": "split_0_train_2260_entity", "type": "progene_text", "text": [ "Jak1" ], "offsets": [ [ 42, 46 ] ], "normalized": [] }, { "id": "split_0_train_2261_entity", "type": "progene_text", "text": [ "Jak2" ], "offsets": [ [ 51, 55 ] ], "normalized": [] }, { "id": "split_0_train_2262_entity", "type": "progene_text", "text": [ "GHR" ], "offsets": [ [ 80, 83 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1489
split_0_train_1489
[ { "id": "split_0_train_1489_passage", "type": "progene_text", "text": [ "The difference in the ratio between GHR - associated Jak1 and Jak2 in liver and adipose tissue may indicate that GHR signaling in different tissues could differ in terms of Jak specificity ." ], "offsets": [ [ 0, 190 ] ] } ]
[ { "id": "split_0_train_2263_entity", "type": "progene_text", "text": [ "GHR" ], "offsets": [ [ 36, 39 ] ], "normalized": [] }, { "id": "split_0_train_2264_entity", "type": "progene_text", "text": [ "Jak1" ], "offsets": [ [ 53, 57 ] ], "normalized": [] }, { "id": "split_0_train_2265_entity", "type": "progene_text", "text": [ "Jak2" ], "offsets": [ [ 62, 66 ] ], "normalized": [] }, { "id": "split_0_train_2266_entity", "type": "progene_text", "text": [ "GHR" ], "offsets": [ [ 113, 116 ] ], "normalized": [] }, { "id": "split_0_train_2267_entity", "type": "progene_text", "text": [ "Jak" ], "offsets": [ [ 173, 176 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1490
split_0_train_1490
[ { "id": "split_0_train_1490_passage", "type": "progene_text", "text": [ "Mitochondrial translation of Saccharomyces cerevisiae COX2 mRNA is controlled by the nucleotide sequence specifying the pre - Cox2p leader peptide ." ], "offsets": [ [ 0, 148 ] ] } ]
[ { "id": "split_0_train_2268_entity", "type": "progene_text", "text": [ "COX2" ], "offsets": [ [ 54, 58 ] ], "normalized": [] }, { "id": "split_0_train_2269_entity", "type": "progene_text", "text": [ "Cox2p" ], "offsets": [ [ 126, 131 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1491
split_0_train_1491
[ { "id": "split_0_train_1491_passage", "type": "progene_text", "text": [ "The mitochondrial gene encoding yeast cytochrome oxidase subunit II ( Cox2p ) specifies a precursor protein with a 15 - amino - acid leader peptide ." ], "offsets": [ [ 0, 149 ] ] } ]
[ { "id": "split_0_train_2270_entity", "type": "progene_text", "text": [ "cytochrome oxidase subunit II" ], "offsets": [ [ 38, 67 ] ], "normalized": [] }, { "id": "split_0_train_2271_entity", "type": "progene_text", "text": [ "Cox2p" ], "offsets": [ [ 70, 75 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1492
split_0_train_1492
[ { "id": "split_0_train_1492_passage", "type": "progene_text", "text": [ "Deletion of the entire leader peptide coding region is known to block Cox2p accumulation posttranscriptionally ." ], "offsets": [ [ 0, 112 ] ] } ]
[ { "id": "split_0_train_2272_entity", "type": "progene_text", "text": [ "Cox2p" ], "offsets": [ [ 70, 75 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1493
split_0_train_1493
[ { "id": "split_0_train_1493_passage", "type": "progene_text", "text": [ "Here , we examined in vivo the role of the pre - Cox2p leader peptide and the mRNA sequence that encodes it in the expression of a mitochondrial reporter gene , ARG8m , fused to the 91st codon of COX2 ." ], "offsets": [ [ 0, 202 ] ] } ]
[ { "id": "split_0_train_2273_entity", "type": "progene_text", "text": [ "Cox2p" ], "offsets": [ [ 49, 54 ] ], "normalized": [] }, { "id": "split_0_train_2274_entity", "type": "progene_text", "text": [ "ARG8m" ], "offsets": [ [ 161, 166 ] ], "normalized": [] }, { "id": "split_0_train_2275_entity", "type": "progene_text", "text": [ "COX2" ], "offsets": [ [ 196, 200 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1494
split_0_train_1494
[ { "id": "split_0_train_1494_passage", "type": "progene_text", "text": [ "We found within the coding sequence antagonistic elements that control translation : the positive element includes sequences in the first 14 codons specifying the leader peptide , while the negative element appears to be within codons 15 to 91 ." ], "offsets": [ [ 0, 245 ] ] } ]
[]
[]
[]
[]
split_0_train_1495
split_0_train_1495
[ { "id": "split_0_train_1495_passage", "type": "progene_text", "text": [ "Partial deletions , point mutations , and local frameshifts within the leader peptide coding region were placed in both the cox2 : : ARG8m reporter and in COX2 itself ." ], "offsets": [ [ 0, 168 ] ] } ]
[ { "id": "split_0_train_2276_entity", "type": "progene_text", "text": [ "cox2" ], "offsets": [ [ 124, 128 ] ], "normalized": [] }, { "id": "split_0_train_2277_entity", "type": "progene_text", "text": [ "ARG8m" ], "offsets": [ [ 133, 138 ] ], "normalized": [] }, { "id": "split_0_train_2278_entity", "type": "progene_text", "text": [ "COX2" ], "offsets": [ [ 155, 159 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1496
split_0_train_1496
[ { "id": "split_0_train_1496_passage", "type": "progene_text", "text": [ "Surprisingly , the mRNA sequence of the first six codons specifying the leader peptide plays an important role in positively controlling translation , while the amino acid sequence of the leader peptide itself is relatively unconstrained ." ], "offsets": [ [ 0, 239 ] ] } ]
[]
[]
[]
[]
split_0_train_1497
split_0_train_1497
[ { "id": "split_0_train_1497_passage", "type": "progene_text", "text": [ "Two mutations that partially block translation can be suppressed by nearby sequence substitutions that weaken a predicted stem structure and by overproduction of either the COX2 mRNA - specific translational activator Pet111p or the large - subunit mitochondrial ribosomal protein MrpL36p ." ], "offsets": [ [ 0, 290 ] ] } ]
[ { "id": "split_0_train_2279_entity", "type": "progene_text", "text": [ "COX2" ], "offsets": [ [ 173, 177 ] ], "normalized": [] }, { "id": "split_0_train_2280_entity", "type": "progene_text", "text": [ "Pet111p" ], "offsets": [ [ 218, 225 ] ], "normalized": [] }, { "id": "split_0_train_2281_entity", "type": "progene_text", "text": [ "MrpL36p" ], "offsets": [ [ 281, 288 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1498
split_0_train_1498
[ { "id": "split_0_train_1498_passage", "type": "progene_text", "text": [ "We propose that regulatory elements embedded in the translated COX2 mRNA sequence could play a role , together with trans - acting factors , in coupling regulated synthesis of nascent pre - Cox2p to its insertion in the mitochondrial inner membrane ." ], "offsets": [ [ 0, 250 ] ] } ]
[ { "id": "split_0_train_2282_entity", "type": "progene_text", "text": [ "COX2" ], "offsets": [ [ 63, 67 ] ], "normalized": [] }, { "id": "split_0_train_2283_entity", "type": "progene_text", "text": [ "Cox2p" ], "offsets": [ [ 190, 195 ] ], "normalized": [] } ]
[]
[]
[]
split_0_train_1499
split_0_train_1499
[ { "id": "split_0_train_1499_passage", "type": "progene_text", "text": [ "Involvement of a triton - insoluble floating fraction in Dictyostelium cell - cell adhesion ." ], "offsets": [ [ 0, 93 ] ] } ]
[]
[]
[]
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